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Conserved domains on  [gi|2462625454|ref|XP_054219301|]
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potassium channel subfamily T member 1 isoform X6 [Homo sapiens]

Protein Classification

potassium channel family protein( domain architecture ID 13585923)

potassium channel family protein spans the cell membrane to form a conduction pathway or pore, through which selective ions such as potassium, sodium, and calcium translocate across cell membranes

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
BK_channel_a pfam03493
Calcium-activated BK potassium channel alpha subunit;
334-428 3.72e-41

Calcium-activated BK potassium channel alpha subunit;


:

Pssm-ID: 460947  Cd Length: 90  Bit Score: 145.77  E-value: 3.72e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625454  334 DHVVCEEECKYAMLALNCICPATSTLITLLVHTSRGQEGQESPEQWQRMYGRCSGNEVYHIRMGDskffrEYEGKSFTYA 413
Cdd:pfam03493    1 DHVICIEELKLGLLAQSCLCPGLSTLITNLLHTRSGEEGQKSSEQWQKEYLRGSGNEIYTIKLSD-----AFVGKTFTEA 75
                           90
                   ....*....|....*
gi 2462625454  414 AFHAHKKYGVCLIGL 428
Cdd:pfam03493   76 ARLAYKKLGVILIGI 90
Ion_trans_2 pfam07885
Ion channel; This family includes the two membrane helix type ion channels found in bacteria.
104-180 2.52e-09

Ion channel; This family includes the two membrane helix type ion channels found in bacteria.


:

Pssm-ID: 462301 [Multi-domain]  Cd Length: 78  Bit Score: 54.58  E-value: 2.52e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462625454  104 TLLCLVFTGGcrtcGIQHLERAGENLSLLTSFYFCIVTFSTVGYGDVTPKIWPSQLLVVIMICVALVVLPLQFEELV 180
Cdd:pfam07885    1 IVLLLVLIFG----TVYYLLEEGWEWSFLDALYFSFVTLTTVGYGDIVPLTDAGRLFTIFYILIGIPLFAIFLAVLG 73
Ion_trans super family cl37996
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ...
3-172 1.97e-04

Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.


The actual alignment was detected with superfamily member pfam00520:

Pssm-ID: 459842 [Multi-domain]  Cd Length: 238  Bit Score: 44.18  E-value: 1.97e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625454    3 LWAIQVIVAIISFLEtMLLIYLSYkGNIWEQIFRVSFVLEMINTLPFIITIFWPPLRNLFIPVFLNCW-------LAKHA 75
Cdd:pfam00520   35 LEILDYVFTGIFTLE-MLLKIIAA-GFKKRYFRSPWNILDFVVVLPSLISLVLSSVGSLSGLRVLRLLrllrllrLIRRL 112
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625454   76 --LENMINdfhrAILRTQSAMFNQVLILFCTLLC-----LVFTGGCRTCGIQHLERAGENLSLLTSFYFCIVTFSTVGYG 148
Cdd:pfam00520  113 egLRTLVN----SLIRSLKSLGNLLLLLLLFLFIfaiigYQLFGGKLKTWENPDNGRTNFDNFPNAFLWLFQTMTTEGWG 188
                          170       180       190
                   ....*....|....*....|....*....|.
gi 2462625454  149 DVTPKI-------WPSQLLVVIMICVALVVL 172
Cdd:pfam00520  189 DIMYDTidgkgefWAYIYFVSFIILGGFLLL 219
 
Name Accession Description Interval E-value
BK_channel_a pfam03493
Calcium-activated BK potassium channel alpha subunit;
334-428 3.72e-41

Calcium-activated BK potassium channel alpha subunit;


Pssm-ID: 460947  Cd Length: 90  Bit Score: 145.77  E-value: 3.72e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625454  334 DHVVCEEECKYAMLALNCICPATSTLITLLVHTSRGQEGQESPEQWQRMYGRCSGNEVYHIRMGDskffrEYEGKSFTYA 413
Cdd:pfam03493    1 DHVICIEELKLGLLAQSCLCPGLSTLITNLLHTRSGEEGQKSSEQWQKEYLRGSGNEIYTIKLSD-----AFVGKTFTEA 75
                           90
                   ....*....|....*
gi 2462625454  414 AFHAHKKYGVCLIGL 428
Cdd:pfam03493   76 ARLAYKKLGVILIGI 90
Ion_trans_2 pfam07885
Ion channel; This family includes the two membrane helix type ion channels found in bacteria.
104-180 2.52e-09

Ion channel; This family includes the two membrane helix type ion channels found in bacteria.


Pssm-ID: 462301 [Multi-domain]  Cd Length: 78  Bit Score: 54.58  E-value: 2.52e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462625454  104 TLLCLVFTGGcrtcGIQHLERAGENLSLLTSFYFCIVTFSTVGYGDVTPKIWPSQLLVVIMICVALVVLPLQFEELV 180
Cdd:pfam07885    1 IVLLLVLIFG----TVYYLLEEGWEWSFLDALYFSFVTLTTVGYGDIVPLTDAGRLFTIFYILIGIPLFAIFLAVLG 73
PRK10537 PRK10537
voltage-gated potassium channel protein;
129-171 8.30e-06

voltage-gated potassium channel protein;


Pssm-ID: 236711 [Multi-domain]  Cd Length: 393  Bit Score: 49.63  E-value: 8.30e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 2462625454  129 LSLLTSFYFCIVTFSTVGYGDVTPKIWPSQLLVVIMICVALVV 171
Cdd:PRK10537   167 ESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITV 209
Ion_trans pfam00520
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ...
3-172 1.97e-04

Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.


Pssm-ID: 459842 [Multi-domain]  Cd Length: 238  Bit Score: 44.18  E-value: 1.97e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625454    3 LWAIQVIVAIISFLEtMLLIYLSYkGNIWEQIFRVSFVLEMINTLPFIITIFWPPLRNLFIPVFLNCW-------LAKHA 75
Cdd:pfam00520   35 LEILDYVFTGIFTLE-MLLKIIAA-GFKKRYFRSPWNILDFVVVLPSLISLVLSSVGSLSGLRVLRLLrllrllrLIRRL 112
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625454   76 --LENMINdfhrAILRTQSAMFNQVLILFCTLLC-----LVFTGGCRTCGIQHLERAGENLSLLTSFYFCIVTFSTVGYG 148
Cdd:pfam00520  113 egLRTLVN----SLIRSLKSLGNLLLLLLLFLFIfaiigYQLFGGKLKTWENPDNGRTNFDNFPNAFLWLFQTMTTEGWG 188
                          170       180       190
                   ....*....|....*....|....*....|.
gi 2462625454  149 DVTPKI-------WPSQLLVVIMICVALVVL 172
Cdd:pfam00520  189 DIMYDTidgkgefWAYIYFVSFIILGGFLLL 219
 
Name Accession Description Interval E-value
BK_channel_a pfam03493
Calcium-activated BK potassium channel alpha subunit;
334-428 3.72e-41

Calcium-activated BK potassium channel alpha subunit;


Pssm-ID: 460947  Cd Length: 90  Bit Score: 145.77  E-value: 3.72e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625454  334 DHVVCEEECKYAMLALNCICPATSTLITLLVHTSRGQEGQESPEQWQRMYGRCSGNEVYHIRMGDskffrEYEGKSFTYA 413
Cdd:pfam03493    1 DHVICIEELKLGLLAQSCLCPGLSTLITNLLHTRSGEEGQKSSEQWQKEYLRGSGNEIYTIKLSD-----AFVGKTFTEA 75
                           90
                   ....*....|....*
gi 2462625454  414 AFHAHKKYGVCLIGL 428
Cdd:pfam03493   76 ARLAYKKLGVILIGI 90
Ion_trans_2 pfam07885
Ion channel; This family includes the two membrane helix type ion channels found in bacteria.
104-180 2.52e-09

Ion channel; This family includes the two membrane helix type ion channels found in bacteria.


Pssm-ID: 462301 [Multi-domain]  Cd Length: 78  Bit Score: 54.58  E-value: 2.52e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462625454  104 TLLCLVFTGGcrtcGIQHLERAGENLSLLTSFYFCIVTFSTVGYGDVTPKIWPSQLLVVIMICVALVVLPLQFEELV 180
Cdd:pfam07885    1 IVLLLVLIFG----TVYYLLEEGWEWSFLDALYFSFVTLTTVGYGDIVPLTDAGRLFTIFYILIGIPLFAIFLAVLG 73
PRK10537 PRK10537
voltage-gated potassium channel protein;
129-171 8.30e-06

voltage-gated potassium channel protein;


Pssm-ID: 236711 [Multi-domain]  Cd Length: 393  Bit Score: 49.63  E-value: 8.30e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 2462625454  129 LSLLTSFYFCIVTFSTVGYGDVTPKIWPSQLLVVIMICVALVV 171
Cdd:PRK10537   167 ESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITV 209
Ion_trans pfam00520
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ...
3-172 1.97e-04

Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.


Pssm-ID: 459842 [Multi-domain]  Cd Length: 238  Bit Score: 44.18  E-value: 1.97e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625454    3 LWAIQVIVAIISFLEtMLLIYLSYkGNIWEQIFRVSFVLEMINTLPFIITIFWPPLRNLFIPVFLNCW-------LAKHA 75
Cdd:pfam00520   35 LEILDYVFTGIFTLE-MLLKIIAA-GFKKRYFRSPWNILDFVVVLPSLISLVLSSVGSLSGLRVLRLLrllrllrLIRRL 112
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625454   76 --LENMINdfhrAILRTQSAMFNQVLILFCTLLC-----LVFTGGCRTCGIQHLERAGENLSLLTSFYFCIVTFSTVGYG 148
Cdd:pfam00520  113 egLRTLVN----SLIRSLKSLGNLLLLLLLFLFIfaiigYQLFGGKLKTWENPDNGRTNFDNFPNAFLWLFQTMTTEGWG 188
                          170       180       190
                   ....*....|....*....|....*....|.
gi 2462625454  149 DVTPKI-------WPSQLLVVIMICVALVVL 172
Cdd:pfam00520  189 DIMYDTidgkgefWAYIYFVSFIILGGFLLL 219
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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