|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
131-793 |
9.15e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 89.73 E-value: 9.15e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 131 KRLQVTNPDLTQVVSLVVEREKQ----------------KSEAKDRKVLEIL----QVKDAKIQEFEQRESVLKQEINDL 190
Cdd:TIGR02168 179 RKLERTRENLDRLEDILNELERQlkslerqaekaerykeLKAELRELELALLvlrlEELREELEELQEELKEAEEELEEL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 191 VKRKIAVDEENAFLRKEFSDLEKKFKDKSQEIKDTKECVQNKEEQNRLV---IKNLEEENKKLSTRCTDLLNDLEKLRKQ 267
Cdd:TIGR02168 259 TAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILrerLANLERQLEELEAQLEELESKLDELAEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 268 EAHLRKEKYSTDAKIKTFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDITLVRKELQ----ELQNLYKQNST 343
Cdd:TIGR02168 339 LAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIErleaRLERLEDRRER 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 344 HTAQQAELIQQLQVLNMDTQKV-----------LRNQEDVHTAESISYQKLYNELHICFETTKSNEAMLRQSVTNLQDQL 412
Cdd:TIGR02168 419 LQQEIEELLKKLEEAELKELQAeleeleeeleeLQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQ 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 413 LQKEQENAKLKEKLQESQGAPLPLPQ-----ESDPDYSA----------------------------------------- 446
Cdd:TIGR02168 499 ENLEGFSEGVKALLKNQSGLSGILGVlseliSVDEGYEAaieaalggrlqavvvenlnaakkaiaflkqnelgrvtflpl 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 447 --------QVPHRPSLSSLETLMVSQKSEIEY--------------------LQEKLKIANE-KLSENISANKG--FSRK 495
Cdd:TIGR02168 579 dsikgteiQGNDREILKNIEGFLGVAKDLVKFdpklrkalsyllggvlvvddLDNALELAKKlRPGYRIVTLDGdlVRPG 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 496 SIMTSAEGKHKEPPVKRSRSLspkssftdsEEL-QKLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYR 574
Cdd:TIGR02168 659 GVITGGSAKTNSSILERRREI---------EELeEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQIS 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 575 AVKEQLKQWEEgsgmTEIRKIKRADPQQLRQEDSDAVWNELAYFKRENQELMI----QKMNLEEELDELKVHISIDKAAI 650
Cdd:TIGR02168 730 ALRKDLARLEA----EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAeaeaEIEELEAQIEQLKEELKALREAL 805
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 651 QELNRCVAERREEQLFRSGEDDEVKRSTPEKngKEMLEQTLQKVIELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLK 730
Cdd:TIGR02168 806 DELRAELTLLNEEAANLRERLESLERRIAAT--ERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERA 883
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462625069 731 QQQEDTETREKELEQIIKGSKDVEKENTELQVKISELETEVTSLRRQVAEANALRNENEELIN 793
Cdd:TIGR02168 884 SLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS 946
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
142-791 |
1.46e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 75.87 E-value: 1.46e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 142 QVVSLVVEREKQKSEAKD-RKVLEILQVKDAKIQEfeqRESVLKQEINDLVKRKIAVDEENAFLRKEFSDLEKKfkdksq 220
Cdd:TIGR02169 323 RLAKLEAEIDKLLAEIEElEREIEEERKRRDKLTE---EYAELKEELEDLRAELEEVDKEFAETRDELKDYREK------ 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 221 eikdtKECVQNKEEQNRLVIKNLEEENKKLSTRCTDLLNDLEKLRKQEAHLRKEKYSTDAKIKTFEDNLIEARKEVEVSQ 300
Cdd:TIGR02169 394 -----LEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYE 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 301 SKYNALSLQLSNKQTELIQKdmditlvRKELQELQnlykqnsthtaQQAELIQQLQVLNMDTQKVLR-NQEDVH--TAES 377
Cdd:TIGR02169 469 QELYDLKEEYDRVEKELSKL-------QRELAEAE-----------AQARASEERVRGGRAVEEVLKaSIQGVHgtVAQL 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 378 ISYQKLYnelHICFETTKSNEamlrqsvtnLQDQLLQKEQENAKLKEKLQESQGAP---LPLPQESDPDYSAQVPHRPSL 454
Cdd:TIGR02169 531 GSVGERY---ATAIEVAAGNR---------LNNVVVEDDAVAKEAIELLKRRKAGRatfLPLNKMRDERRDLSILSEDGV 598
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 455 SSLETLMVSQKSEIEYLQeKLKIANEKLSENISANKGFSRKSIMTSAEGKHKEPP---VKRSRSLSPKSSFT--DSEELQ 529
Cdd:TIGR02169 599 IGFAVDLVEFDPKYEPAF-KYVFGDTLVVEDIEAARRLMGKYRMVTLEGELFEKSgamTGGSRAPRGGILFSrsEPAELQ 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 530 KLRKAERKIENLEKALQ--LKSQEN------DELRDAHEKRKE---RLQMLQTNYRAVKEQLKQWEEgsgmtEIRKIKRA 598
Cdd:TIGR02169 678 RLRERLEGLKRELSSLQseLRRIENrldelsQELSDASRKIGEiekEIEQLEQEEEKLKERLEELEE-----DLSSLEQE 752
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 599 dpqqlrqedSDAVWNELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAI--QELNRCVAERREEQLFRSGEDDEVKR 676
Cdd:TIGR02169 753 ---------IENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEiqAELSKLEEEVSRIEARLREIEQKLNR 823
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 677 STPEKNGKEMLEQTLQ-KVIELENRLKSFEKRsrkLKEGNKKLMKendfLKSLLKQQQEDTETREKELEQIIKGSKDVEK 755
Cdd:TIGR02169 824 LTLEKEYLEKEIQELQeQRIDLKEQIKSIEKE---IENLNGKKEE----LEEELEELEAALRDLESRLGDLKKERDELEA 896
|
650 660 670
....*....|....*....|....*....|....*..
gi 2462625069 756 ENTELQVKISELETEVTSLRRQVAEANA-LRNENEEL 791
Cdd:TIGR02169 897 QLRELERKIEELEAQIEKKRKRLSELKAkLEALEEEL 933
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
154-748 |
2.85e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.51 E-value: 2.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 154 KSEAKDRKVLEIL---QVKDAKIQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEFSDLEKKFKDKSQEIKDTKECVQ 230
Cdd:COG1196 219 KEELKELEAELLLlklRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELA 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 231 NKEEQNRLV---IKNLEEENKKLSTRCTDLLNDLEKLRKQEAHLRKEKYSTDAKIKTFEDNLIEARKEVEVSQSKYNALS 307
Cdd:COG1196 299 RLEQDIARLeerRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 308 LQLSNKQTELIQKDMDITLVRKELQELQnlyKQNSTHTAQQAELIQQLQVLNMDTQKVLRNQEDVHTAESISYQKLynel 387
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLEELE---EAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE---- 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 388 hicfETTKSNEAMLRQSVTNLQDQLLQKEQENAKLKEKLQE--SQGAPLPLPQESDPDYSAQVPhRPSLSSLETLMVSQK 465
Cdd:COG1196 452 ----AELEEEEEALLELLAELLEEAALLEAALAELLEELAEaaARLLLLLEAEADYEGFLEGVK-AALLLAGLRGLAGAV 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 466 SEIEYLQEKLKIANEKLSENISANKGFSRKSIMTSAEGKHKEPPVKR-----SRSLSPKSSFTDSEELQKLRKAERKIEN 540
Cdd:COG1196 527 AVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRatflpLDKIRARAALAAALARGAIGAAVDLVAS 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 541 LEKALQLKSQ-------ENDELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEGSGMTEIRKIKRADPQQLRQEDSDAVWN 613
Cdd:COG1196 607 DLREADARYYvlgdtllGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAE 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 614 ELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNRCVAERREEQLFRSGEDDEVKRSTPEKNGKEMLEQTlqk 693
Cdd:COG1196 687 RLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE--- 763
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462625069 694 viELENRLKSFEKRSRKLKEGN-------KKLMKENDFLKSllkqQQEDTETREKELEQIIK 748
Cdd:COG1196 764 --ELERELERLEREIEALGPVNllaieeyEELEERYDFLSE----QREDLEEARETLEEAIE 819
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
241-808 |
3.72e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.69 E-value: 3.72e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 241 KNLEEENKKLsTRCTDLLNDLEK-----------------LRKQEAHLRKEKYSTDakIKTFEDNLIEARKEVEVSQSKY 303
Cdd:TIGR02168 179 RKLERTRENL-DRLEDILNELERqlkslerqaekaerykeLKAELRELELALLVLR--LEELREELEELQEELKEAEEEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 304 NALSLQLSNKQTELIQKDMDITLVRKELQELQNLYKQnstHTAQQAELIQQLQVLNMDTQKVLRNQEDVHTAESISYQKL 383
Cdd:TIGR02168 256 EELTAELQELEEKLEELRLEVSELEEEIEELQKELYA---LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 384 ynelhicfETTKSNEAMLRQSVTNLQDQLLQKEQENAKLKEKLQESQGAPLPLPQESDPDYSAQVPHRPSLSSLETLMVS 463
Cdd:TIGR02168 333 --------DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIER 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 464 QKSEIEYLQEKLKIANEKLSENISANKGFSRKSIMTSAEGKHKEPPVKRSRslspkssftDSEELQKLRKAERKIENLEK 543
Cdd:TIGR02168 405 LEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEE---------LERLEEALEELREELEEAEQ 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 544 ALQLKSQENDELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEGSGM---------------TEIRKIKRADPQQLRQEDS 608
Cdd:TIGR02168 476 ALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGIlgvlselisvdegyeAAIEAALGGRLQAVVVENL 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 609 DAVWNELAYFKRENQ------------------ELMIQKMNLEEELDELKVHISIDKAA----------------IQELN 654
Cdd:TIGR02168 556 NAAKKAIAFLKQNELgrvtflpldsikgteiqgNDREILKNIEGFLGVAKDLVKFDPKLrkalsyllggvlvvddLDNAL 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 655 RCVAERREEQLF-------------RSGEDDEVKRSTPE-----KNGKEMLEQTLQKVIELENRLKSFEKRSRKLKEGNK 716
Cdd:TIGR02168 636 ELAKKLRPGYRIvtldgdlvrpggvITGGSAKTNSSILErrreiEELEEKIEELEEKIAELEKALAELRKELEELEEELE 715
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 717 KLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTELQVKISELETEVTSLRRQVAEANALRNENEELINPME 796
Cdd:TIGR02168 716 QLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795
|
650
....*....|..
gi 2462625069 797 KSHQSADRAKSE 808
Cdd:TIGR02168 796 EELKALREALDE 807
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
525-783 |
3.80e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.16 E-value: 3.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 525 SEELQKLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEGSGMT----------EIRK 594
Cdd:TIGR02169 226 YELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRvkekigeleaEIAS 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 595 IKRA-DPQQLRQEDSDA-----------VWNELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNRCVAERRE 662
Cdd:TIGR02169 306 LERSiAEKERELEDAEErlakleaeidkLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRD 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 663 EQLFRSGEDDEVKRSTPEKNGK-----EMLEQTLQKVIELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTE 737
Cdd:TIGR02169 386 ELKDYREKLEKLKREINELKREldrlqEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLS 465
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 2462625069 738 TREKELEQIIKGSKDVEKENTELQVKISELETEVTSLRRQVAEANA 783
Cdd:TIGR02169 466 KYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRA 511
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
151-802 |
2.03e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.92 E-value: 2.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 151 EKQKSEAKDRKVLEILQVKDAKIQEFEQRESvlKQEINDLVKRKIAVDEENAFLRKEfSDLEKKFKDKSQEIKDTKECVQ 230
Cdd:PTZ00121 1215 EEARKAEDAKKAEAVKKAEEAKKDAEEAKKA--EEERNNEEIRKFEEARMAHFARRQ-AAIKAEEARKADELKKAEEKKK 1291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 231 NKEEQNRLVIKNLEEENKKL--STRCTDLLNDLEKLRKQEAHLRKEKYSTDAKIKTFEDNLIEARKEVEVSQSKYNAlsl 308
Cdd:PTZ00121 1292 ADEAKKAEEKKKADEAKKKAeeAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEA--- 1368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 309 qlSNKQTELIQKDMDITLVRKELQELQNLYKQNSTHTAQQAELIQQLQVLNMDTQKVLRNQEDVHTAESISYQKLynelh 388
Cdd:PTZ00121 1369 --AEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAE----- 1441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 389 icfETTKSNEAMLRQSVTNLQDQLLQKEQENAKLKEKLQESQgaplplpqesdpdysaqvphrpslssletlmvsQKSEI 468
Cdd:PTZ00121 1442 ---EAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAE---------------------------------EAKKA 1485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 469 EYLQEKLKIANEKLSENISANKGFSRKSIMTSAEGKHKEPPVKRSRSLSPKSSFTDSEELQK---LRKAE--RKIENLEK 543
Cdd:PTZ00121 1486 DEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKadeLKKAEelKKAEEKKK 1565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 544 ALQLKSQEND---------ELRDAHEKRKERLQMLQTNYRAVK-EQLKQWEEgsgmteirkiKRADPQQLRQEDSDAVWN 613
Cdd:PTZ00121 1566 AEEAKKAEEDknmalrkaeEAKKAEEARIEEVMKLYEEEKKMKaEEAKKAEE----------AKIKAEELKKAEEEKKKV 1635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 614 ELAYFKRENQELMIQKMNLEEELD-----ELKVHISIDKAAIQELNRCVAERR--EEQLFRSGED----DEVKRSTPE-- 680
Cdd:PTZ00121 1636 EQLKKKEAEEKKKAEELKKAEEENkikaaEEAKKAEEDKKKAEEAKKAEEDEKkaAEALKKEAEEakkaEELKKKEAEek 1715
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 681 KNGKEMLEQTLQKVIELENRLKSFEKRSRKLKEGnKKLMKENDFLKSLLKQQQEDTETREKELEQIIKgsKDVEKENTEL 760
Cdd:PTZ00121 1716 KKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEA-KKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIE--EELDEEDEKR 1792
|
650 660 670 680
....*....|....*....|....*....|....*....|..
gi 2462625069 761 QVKISELETEVTSLRRQVAEANalrNENEELINPMEKSHQSA 802
Cdd:PTZ00121 1793 RMEVDKKIKDIFDNFANIIEGG---KEGNLVINDSKEMEDSA 1831
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
526-808 |
3.06e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.94 E-value: 3.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 526 EELQKLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEgsgmteirkikradpqqlrq 605
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQ-------------------- 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 606 edsdavwnELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNRCVAERREEQlfrsgeddevkrstpeKNGKE 685
Cdd:COG1196 303 --------DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEEL----------------EEAEA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 686 MLEQTLQKVIELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTELQVKIS 765
Cdd:COG1196 359 ELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEE 438
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 2462625069 766 ELETEVTSLRRQVAEANALRNENEELINPMEKSHQSADRAKSE 808
Cdd:COG1196 439 EEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAE 481
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
131-780 |
4.07e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 54.59 E-value: 4.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 131 KRLQVTNPDLTQVVSLVVEREKQ-KSEAKDRKVLEILQVKDAKIQEFEQRESVLKQeiNDLVKRKIAVDEENAFLRKEFS 209
Cdd:pfam02463 176 KKLIEETENLAELIIDLEELKLQeLKLKEQAKKALEYYQLKEKLELEEEYLLYLDY--LKLNEERIDLLQELLRDEQEEI 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 210 DLEKKFKDKSQEIKDTKECVQNKEEQnrlVIKNLEEENKKLSTRCTDLLNDLEKLRKQEAHLRKEKYSTDAKIKTFEDNL 289
Cdd:pfam02463 254 ESSKQEIEKEEEKLAQVLKENKEEEK---EKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKEL 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 290 IEARKEVE-----------VSQSKYNALSLQLSNKQTELIQKDMDITLVRKELQELQNLYKQNSTHTAQQAELIQQLQVL 358
Cdd:pfam02463 331 KKEKEEIEelekelkeleiKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLL 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 359 N------MDTQKVLRNQEDVHTAESisyQKLYNELHICFETTKSNEAMLRQSVTNLQDQLLQKEQENAKLKEKLQESQGA 432
Cdd:pfam02463 411 LelarqlEDLLKEEKKEELEILEEE---EESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLE 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 433 PLPLPQESDPDYSAQVPHRPSLSSLETLMVSQKS----EIEYLQEKLKIANEKLSENISANKGFSRKSIMTSAEGKHKEP 508
Cdd:pfam02463 488 LLLSRQKLEERSQKESKARSGLKVLLALIKDGVGgriiSAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLV 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 509 PVKRSRSLSPKSSFTDSEELQKLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEGSG 588
Cdd:pfam02463 568 RALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESG 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 589 MTEIRKIKRADPQQLRQEDSDAVWNELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNRCVAERRE-EQLFR 667
Cdd:pfam02463 648 LRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEElLADRV 727
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 668 SGEDDEVKRSTPEKNGKEMLEQTLQKVIELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQII 747
Cdd:pfam02463 728 QEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALE 807
|
650 660 670
....*....|....*....|....*....|...
gi 2462625069 748 KGSKDVEKENTELQVKISELETEVTSLRRQVAE 780
Cdd:pfam02463 808 EELKEEAELLEEEQLLIEQEEKIKEEELEELAL 840
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
103-663 |
7.70e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.79 E-value: 7.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 103 QLLEEELSSLKEELALCQADKEfvwslwkRLQVTNPDLTQVVSLVVEREkQKSEAKDRKVLEILQVKDAKIQEFEQRESV 182
Cdd:COG1196 249 EELEAELEELEAELAELEAELE-------ELRLELEELELELEEAQAEE-YELLAELARLEQDIARLEERRRELEERLEE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 183 LKQEINDLVKRKIAVDEENAFLRKEFSDLEKKFKDKSQEIKDTKECVQNKEEQNRLVIKNLEEENKKLST---RCTDLLN 259
Cdd:COG1196 321 LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEalrAAAELAA 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 260 DLEKLRKQEAHLRKEKYSTDAKIKTFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDITLVRKELQELQNLYK 339
Cdd:COG1196 401 QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 340 QNSTHTAQQAELIQQLQvlNMDTQKVLRNQEDVHTAESISYQKLYNELHICFETTKSNEAMLRQSVT-NLQDQLLQKEQE 418
Cdd:COG1196 481 ELLEELAEAAARLLLLL--EAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAaALQNIVVEDDEV 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 419 NAKLKEKLQESQ-GAPLPLPQESDPDYSAQVPHRPSLSSLETLMVSQKSEIEYLQEKLKIANEKLSENISANKGFSRKSI 497
Cdd:COG1196 559 AAAAIEYLKAAKaGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRR 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 498 MTSAEGKHKEPPVKRSRSLSPKSSFTDSEELQKLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRAVK 577
Cdd:COG1196 639 AVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLE 718
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 578 EQLKQWEEGSGMTEIRKIKRADPQQLRQEDSDAVWNELA-YFKRENQELMIQKmnLEEELDELKvhiSIDKAAIQELNRc 656
Cdd:COG1196 719 EELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPePPDLEELERELER--LEREIEALG---PVNLLAIEEYEE- 792
|
....*..
gi 2462625069 657 VAERREE 663
Cdd:COG1196 793 LEERYDF 799
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
170-741 |
2.45e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.99 E-value: 2.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 170 DAKIQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEFSDLEKkfkdksqeikdTKECVQNKEEQNRLV---IKNLEEE 246
Cdd:PRK03918 192 EELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE-----------LKEEIEELEKELESLegsKRKLEEK 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 247 NKKLSTRCTDLLNDLEKLRKQEAHLR--KEKYSTDAKIKTFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDI 324
Cdd:PRK03918 261 IRELEERIEELKKEIEELEEKVKELKelKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERL 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 325 TLVRKELQELQNLYkqnsthtaqqAELIQQLQVLNMDTQKVLRNQEDVHTAESISYQKLYNELhicfETTKSNEAMLRQS 404
Cdd:PRK03918 341 EELKKKLKELEKRL----------EELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKEL----EELEKAKEEIEEE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 405 VTNLQDQLLQKEQENAKLKEKLQESQGAPLPLPqesdpdysaqVPHRP-SLSSLETLMVSQKSEIEYLQEKLKIANEKLS 483
Cdd:PRK03918 407 ISKITARIGELKKEIKELKKAIEELKKAKGKCP----------VCGRElTEEHRKELLEEYTAELKRIEKELKEIEEKER 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 484 EnISANKGFSRKSIMTSAEGKHKEPPVKRSRSLSPKSSFTDSEELQKLRKAERKIEnlEKALQLKSQENDELRDAhekrk 563
Cdd:PRK03918 477 K-LRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLK--EKLIKLKGEIKSLKKEL----- 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 564 ERLQMLQTNYRAVKEQLKQWEE--GSGMTEIRKIKRADPQQLRQEDSdavwnELAYFKRENQELMIQKMNLEEELDELKV 641
Cdd:PRK03918 549 EKLEELKKKLAELEKKLDELEEelAELLKELEELGFESVEELEERLK-----ELEPFYNEYLELKDAEKELEREEKELKK 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 642 HISIDKAAIQELNRCVAERRE-----EQLFRSGEDDEVKRSTPEKNGKEM-LEQTLQKVIELENRLKSFEKRSRKLKEGN 715
Cdd:PRK03918 624 LEEELDKAFEELAETEKRLEElrkelEELEKKYSEEEYEELREEYLELSReLAGLRAELEELEKRREEIKKTLEKLKEEL 703
|
570 580
....*....|....*....|....*.
gi 2462625069 716 KKLMKENDFLKSLLKQQQEDTETREK 741
Cdd:PRK03918 704 EEREKAKKELEKLEKALERVEELREK 729
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
212-799 |
1.63e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.25 E-value: 1.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 212 EKKFKDKSQEIKDTKECVQNKEEQnrlvIKNLEEENKKLSTRCTDLLNDLEKLRKQEAHLRKEKYSTDAKIKTFEDNLIE 291
Cdd:TIGR04523 32 DTEEKQLEKKLKTIKNELKNKEKE----LKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSK 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 292 ARKEVEVSQSKYNALSLQLSNKQTELIQKDMDITLVRKEL----QELQNLYKQNSTHTAQQAELIQQLQVLNMDTQKVLR 367
Cdd:TIGR04523 108 INSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIkkkeKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQK 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 368 NQEDVHTAESISYQKL-----YNELHICFETTKSNeamLRQSVTNLQDQLLQKEQENAKLKEKLQESQGAPLPLPQESDP 442
Cdd:TIGR04523 188 NIDKIKNKLLKLELLLsnlkkKIQKNKSLESQISE---LKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNK 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 443 DYSAQVPHRPSLSSLETLMVSQKSEIEYLQEKLKIANEKLSENISANkgfsRKSIMTSAEGKHKEPPVKRSRSLspkssf 522
Cdd:TIGR04523 265 IKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKE----LKSELKNQEKKLEEIQNQISQNN------ 334
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 523 tdseelQKLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEGSGMTEIRKIKRADPQQ 602
Cdd:TIGR04523 335 ------KIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQ 408
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 603 LRQEDSDAVWNELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNRCVAERREEQLFRSGEDDEVKRSTPE-- 680
Cdd:TIGR04523 409 QKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQkq 488
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 681 ---KNGKEMLEQTLQKVIELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETRE----------------K 741
Cdd:TIGR04523 489 kelKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDfelkkenlekeideknK 568
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 2462625069 742 ELEQIIKGSKDVEKENTELQVKISELETEVTSLRRQVAEANALRNENEELINPMEKSH 799
Cdd:TIGR04523 569 EIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKEN 626
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
204-835 |
2.52e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 2.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 204 LRKEFSDLEKKFKDKSQEIKDTKECVQNKEEQNRLVIKNLEEENKKL-STRCTDLLNDLEKLRKQEAHLRKE--KYSTDA 280
Cdd:PTZ00121 1072 LKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEeAKKKAEDARKAEEARKAEDARKAEeaRKAEDA 1151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 281 KIKTFEDNLIEARKeVEVSQSKYNALSLQLSNKQTEL-----IQKDMDITLVrKELQELQNLYKQNSTHTAQQAELIQQL 355
Cdd:PTZ00121 1152 KRVEIARKAEDARK-AEEARKAEDAKKAEAARKAEEVrkaeeLRKAEDARKA-EAARKAEEERKAEEARKAEDAKKAEAV 1229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 356 QvlnmDTQKVLRNQEDVHTAESISYqklyNELHICFETTKSNEAMLRQSVTNLQDQLLQKEQENAKLKEKLQESQGAPLP 435
Cdd:PTZ00121 1230 K----KAEEAKKDAEEAKKAEEERN----NEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEK 1301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 436 LPQESDPDYSaqvphrpslssletlmvSQKSEIEYLQEKLKIANEKLSENISANKGFSRKSIMTSAEGKHKEPPVKRSRS 515
Cdd:PTZ00121 1302 KKADEAKKKA-----------------EEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE 1364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 516 LSPKSSFTDSEELQKLRKAERKIENLEKALQLKSQENDELRDAHE-KRKERLQMLQTNYRAVKEQLKQWEEGSGMTEirK 594
Cdd:PTZ00121 1365 KAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADElKKAAAAKKKADEAKKKAEEKKKADEAKKKAE--E 1442
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 595 IKRADPQQLRQEDSDAVWN--ELAYFKRENQELMiQKMNLEEELDELKVHISIDKAAIQELNRCVAERREEQLFRSGED- 671
Cdd:PTZ00121 1443 AKKADEAKKKAEEAKKAEEakKKAEEAKKADEAK-KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEa 1521
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 672 ---DEVKRSTPEKNGKEMLEQTLQKVIELENRLKSFEKRSRKLKEGNKKlmKENDFLKSLLKQQQEDTETREKELEQIIK 748
Cdd:PTZ00121 1522 kkaDEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAK--KAEEDKNMALRKAEEAKKAEEARIEEVMK 1599
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 749 GSKDVEKENTELQVKISELETEVTSLRRqvaeANALRNENEELINPMEKSHQSADRAKSEMATMKVRSGRYDCKTTMTKV 828
Cdd:PTZ00121 1600 LYEEEKKMKAEEAKKAEEAKIKAEELKK----AEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKK 1675
|
....*..
gi 2462625069 829 KFKAAKK 835
Cdd:PTZ00121 1676 KAEEAKK 1682
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
592-823 |
3.55e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.14 E-value: 3.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 592 IRKIKRADPQQLRQEDSDAVWNELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNRCVAERREEQLFRSGED 671
Cdd:PRK03918 151 VRQILGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEV 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 672 DEVKRSTPEKNGKEMLEQTLQKVIE-LENRLKSFEKRSRKLKEGNKKLMKENDFLKSLlKQQQEDTETREKELEQIIKGS 750
Cdd:PRK03918 231 KELEELKEEIEELEKELESLEGSKRkLEEKIRELEERIEELKKEIEELEEKVKELKEL-KEKAEEYIKLSEFYEEYLDEL 309
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462625069 751 KDVEKENTELQVKISELETEVTSLRRQVAEANALRNENEEL---INPMEKSHQSADRAKSEMATMKVRSGRYDCKT 823
Cdd:PRK03918 310 REIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELekrLEELEERHELYEEAKAKKEELERLKKRLTGLT 385
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
983-1272 |
3.72e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 48.28 E-value: 3.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 983 LRERIISLQQQNSVLQNAKKTAELSVKEYKEVNEKLLHQQQVSDQRFQTSRQTIKKLNLDLaglrKEKEDLLK--KLESS 1060
Cdd:pfam10174 420 LKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQREREDRERLEELESLKKENKDL----KEKVSALQpeLTEKE 495
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 1061 SEITSLAEensqvtfpriQVTSLSPS-RSMDLEMKQLQYKLKNATNELTKQSSNVKTLKfELLAKEEHIKEMHEKISRME 1139
Cdd:pfam10174 496 SSLIDLKE----------HASSLASSgLKKDSKLKSLEIAVEQKKEECSKLENQLKKAH-NAEEAVRTNPEINDRIRLLE 564
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 1140 RDITMKR-----------HLIEDLKFRQKVNLESNKSFSEMLQNLDKKVKTLTEECSNKKvSIDSLKQRLNVAVKEKSQY 1208
Cdd:pfam10174 565 QEVARYKeesgkaqaeveRLLGILREVENEKNDKDKKIAELESLTLRQMKEQNKKVANIK-HGQQEMKKKGAQLLEEARR 643
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462625069 1209 EQMYQKSK----------EELEKKDLKLTLLVSRISETESAMAEIETAASKQLQELALQSEQVLEGAQKTLLLA 1272
Cdd:pfam10174 644 REDNLADNsqqlqleelmGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLRAERRKQLEEILEMKQEALLAA 717
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
178-793 |
4.60e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.71 E-value: 4.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 178 QRESVLKQEINDLVKRKIAVDEENAFLRKEFSDLEKKFKDKSQEIKDTKECVQNKEEQNRLVIKNLEEENKKLSTRCTDL 257
Cdd:TIGR04523 117 EQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKL 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 258 LNDLEKLRKQEAHLRKEKySTDAKIKTFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDITLVRKELQELQNL 337
Cdd:TIGR04523 197 LKLELLLSNLKKKIQKNK-SLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKE 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 338 YKQNSTHTAQQAELIQQL--QVLNMDTQKVLRNQEDVHTaESISYQKLYNELHICFETTKSNEAMLRQSVTNLQDQLLQK 415
Cdd:TIGR04523 276 LEQNNKKIKELEKQLNQLksEISDLNNQKEQDWNKELKS-ELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNS 354
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 416 EQENAKLKEKLQESQGAPLPLPQESDpdysaqvphrpslssletlmvSQKSEIEYLQEKLKIANEKLSENISANKGFSRK 495
Cdd:TIGR04523 355 ESENSEKQRELEEKQNEIEKLKKENQ---------------------SYKQEIKNLESQINDLESKIQNQEKLNQQKDEQ 413
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 496 SIMTSAEGKHKEPPVKRSRslspkssftdseelQKLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRA 575
Cdd:TIGR04523 414 IKKLQQEKELLEKEIERLK--------------ETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINK 479
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 576 VKEQLKQWEEgsgmteirkikradpqqlrqedsdavwnELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNR 655
Cdd:TIGR04523 480 IKQNLEQKQK----------------------------ELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLES 531
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 656 CVAERREEQLFRSGEDDEVKRSTPEKNGKEMLEQTLQKVIELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQED 735
Cdd:TIGR04523 532 EKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKK 611
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 2462625069 736 TETREKELEQIIKGSKDVEKENTELQVKISELETEVTSLRRQVAEANALRNENEELIN 793
Cdd:TIGR04523 612 ISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIK 669
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
259-428 |
6.19e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 6.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 259 NDLEKLRKQEAHLRKEKYSTDAKIKTFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDITLVRKELQELQNLY 338
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 339 kqnsthtaqqAELIQQLQVL-NMDTQKVLRNQEDVHTAESIS--YQKLYNELHICFETTKSNEAMLRQSVTNLQDQLLQK 415
Cdd:COG4942 107 ----------AELLRALYRLgRQPPLALLLSPEDFLDAVRRLqyLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170
....*....|...
gi 2462625069 416 EQENAKLKEKLQE 428
Cdd:COG4942 177 EALLAELEEERAA 189
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
156-808 |
1.16e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.60 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 156 EAKDRKVLEILQVKDakiqeFEQRESVLKQEINDLVKRKIAVDEenaFLRKEfSDLEKKFKDKSQEIKDTKECVQNKEEQ 235
Cdd:PRK03918 145 ESREKVVRQILGLDD-----YENAYKNLGEVIKEIKRRIERLEK---FIKRT-ENIEELIKEKEKELEEVLREINEISSE 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 236 NRLVIKNLEEENKKLStRCTDLLNDLEKLRKQEAHLRKEKYSTDAKIKTFEDNLIEARKEVEVSQSKYNAL-SLQLSNKQ 314
Cdd:PRK03918 216 LPELREELEKLEKEVK-ELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELkELKEKAEE 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 315 TELIQKDMDitlvrKELQELQNLYKQNSTHTAQQAELIQQLQVLNMDTQKVlrnqedvhtaesisyqklyNELHICFETT 394
Cdd:PRK03918 295 YIKLSEFYE-----EYLDELREIEKRLSRLEEEINGIEERIKELEEKEERL-------------------EELKKKLKEL 350
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 395 KSNEAMLRQSVTNLQDqLLQKEQENAKLKEKLQESqgaplplpqesdpdysaqvphrpSLSSLETLMVSQKSEIEYLQEK 474
Cdd:PRK03918 351 EKRLEELEERHELYEE-AKAKKEELERLKKRLTGL-----------------------TPEKLEKELEELEKAKEEIEEE 406
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 475 LKIANEKLSEnISANKGFSRKSIMTSAEGKHKEPPVKRSrslspkssFTDSEELQKLRKAERKIENLEKALQLKSQENDE 554
Cdd:PRK03918 407 ISKITARIGE-LKKEIKELKKAIEELKKAKGKCPVCGRE--------LTEEHRKELLEEYTAELKRIEKELKEIEEKERK 477
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 555 LRdaheKRKERLQMLQTN------YRAVKEQLKQWEEGSGMTEIRKIKRAdpqqlrqedsdavWNELAYFKRENQELMIQ 628
Cdd:PRK03918 478 LR----KELRELEKVLKKeselikLKELAEQLKELEEKLKKYNLEELEKK-------------AEEYEKLKEKLIKLKGE 540
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 629 KMNLEEELDELKVHISiDKAAIQELNRCVAERREEQL-------FRSGEDDEVKRSTPEKNGKEMLEqTLQKVIELENRL 701
Cdd:PRK03918 541 IKSLKKELEKLEELKK-KLAELEKKLDELEEELAELLkeleelgFESVEELEERLKELEPFYNEYLE-LKDAEKELEREE 618
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 702 KSFEKRSRKLKEGNKKLMKENDFLKSLlkqqqedtetrEKELEQiiKGSKDVEKENTELQVKISELETEVTSLRRQVAEA 781
Cdd:PRK03918 619 KELKKLEEELDKAFEELAETEKRLEEL-----------RKELEE--LEKKYSEEEYEELREEYLELSRELAGLRAELEEL 685
|
650 660
....*....|....*....|....*..
gi 2462625069 782 NALRNENEELINPMEKSHQSADRAKSE 808
Cdd:PRK03918 686 EKRREEIKKTLEKLKEELEEREKAKKE 712
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
129-356 |
2.20e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.82 E-value: 2.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 129 LWKRLQVTNPDLTQVVSLVVEREKQKSEAKDRKVLEILQVkDAKIQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEF 208
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEL-EAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL 826
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 209 SDLEKKFKDKSQEIKDTKECVQNKEEQ---NRLVIKNLEEENKKLSTRCTDLLNDLEKLRKQEAHLRKEKYSTDAKIKTF 285
Cdd:TIGR02168 827 ESLERRIAATERRLEDLEEQIEELSEDiesLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELREL 906
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462625069 286 EDNLIEARKEVEVSQSKYNALSLQLSN-KQTELIQKDMDITLVRKELQELQNLYKQNSTHTAQQAELIQQLQ 356
Cdd:TIGR02168 907 ESKRSELRRELEELREKLAQLELRLEGlEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLE 978
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
526-664 |
2.48e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 2.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 526 EELQKLRKAERKIENLEKALQLKSQENDELRDAHEKR---------KERLQMLQTNYRAVKEQLKQWEEGsgMTEIRKIK 596
Cdd:COG4717 92 ELQEELEELEEELEELEAELEELREELEKLEKLLQLLplyqelealEAELAELPERLEELEERLEELREL--EEELEELE 169
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462625069 597 ------RADPQQLRQEDSDAVWNELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNRCVAERREEQ 664
Cdd:COG4717 170 aelaelQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEE 243
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
229-430 |
2.74e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.39 E-value: 2.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 229 VQNKEEQNRLVIKNLEEENKKLSTRCTDLLNDLEKLRKQE--AHLRKEKYSTDAKIKTFEDNLIEARKEVEVSQSKYNAL 306
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNglVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAAL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 307 SLQLSNKQTEL--IQKDMDITLVRKELQELQnlykqnsthtAQQAELIQQLQVLNMDTQKVLRNQEDVHTAESISYQKLY 384
Cdd:COG3206 246 RAQLGSGPDALpeLLQSPVIQQLRAQLAELE----------AELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRIL 315
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2462625069 385 NELHICFETTKSNEAMLRQSVTNLQDQLL---QKEQENAKLKEKLQESQ 430
Cdd:COG3206 316 ASLEAELEALQAREASLQAQLAQLEARLAelpELEAELRRLEREVEVAR 364
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
529-829 |
3.74e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.05 E-value: 3.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 529 QKLRKAERKIENLEKALqlksqenDELRDAHEKRKERLQMLQ------TNYRAVKEQLKQWEEGSGMTEIRKIKRadpqq 602
Cdd:TIGR02168 172 ERRKETERKLERTRENL-------DRLEDILNELERQLKSLErqaekaERYKELKAELRELELALLVLRLEELRE----- 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 603 lrqedsdavwnELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNRCVAERREEqlfrsgeddevkrstpekn 682
Cdd:TIGR02168 240 -----------ELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKE------------------- 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 683 gkemLEQTLQKVIELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTELQV 762
Cdd:TIGR02168 290 ----LYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEA 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 763 KISELET--------------EVTSLRRQVAEANALRNENEELINPMEKSHQSADRAKSEMATMKVRSGRYDCKTTMTKV 828
Cdd:TIGR02168 366 ELEELESrleeleeqletlrsKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEEL 445
|
.
gi 2462625069 829 K 829
Cdd:TIGR02168 446 E 446
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
173-359 |
6.36e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.24 E-value: 6.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 173 IQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEFSDLEKKFKDKSQEIKDTKECVQNKEEQnrlvIKNLEEENKKLST 252
Cdd:TIGR04523 351 LTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQ----IKKLQQEKELLEK 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 253 RCTDLLNDLEKLRKQEAHLRKEKYSTDAKIKTFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDITLVRKELQ 332
Cdd:TIGR04523 427 EIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKK 506
|
170 180
....*....|....*....|....*..
gi 2462625069 333 ELQNlykQNSTHTAQQAELIQQLQVLN 359
Cdd:TIGR04523 507 ELEE---KVKDLTKKISSLKEKIEKLE 530
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
157-335 |
9.88e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.22 E-value: 9.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 157 AKDRKVLEILQVKDAKIQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEFSDLEKKFKDKSQEIKDTKECVQNKEEQN 236
Cdd:COG1579 3 PEDLRALLDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 237 RLVIKNleeenkklstrctdllNDLEKLRKQEAHLRKEKYSTDAKIKTFEDNLIEARKEVEVSQSKYNALSLQLSNKQTE 316
Cdd:COG1579 83 GNVRNN----------------KEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAE 146
|
170
....*....|....*....
gi 2462625069 317 LiqkDMDITLVRKELQELQ 335
Cdd:COG1579 147 L---DEELAELEAELEELE 162
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
529-663 |
1.09e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.22 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 529 QKLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEgsgmteirKIKRADPQQLR---Q 605
Cdd:COG1579 17 SELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEA--------RIKKYEEQLGNvrnN 88
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 2462625069 606 EDSDAVWNELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNRCVAERREE 663
Cdd:COG1579 89 KEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAE 146
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
678-793 |
1.52e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.99 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 678 TPEKNGKEMLEqTLQK-----VIELENRLKSFekRSRKLKEGNKKLMKENDFLKSLLKQQQEDTET----REKELEQIIK 748
Cdd:PRK05771 13 TLKSYKDEVLE-ALHElgvvhIEDLKEELSNE--RLRKLRSLLTKLSEALDKLRSYLPKLNPLREEkkkvSVKSLEELIK 89
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 2462625069 749 GSK----DVEKENTELQVKISELETEVTSLRRQVAEANALRNENEELIN 793
Cdd:PRK05771 90 DVEeeleKIEKEIKELEEEISELENEIKELEQEIERLEPWGNFDLDLSL 138
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1021-1273 |
2.04e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 2.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 1021 QQQVSDQRFQTSRQTIKKLNLDLAGLRKEKEDLLKKLESSseitslaeensqvtfpriqvtslspsrsmDLEMKQLQYKL 1100
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL-----------------------------ERRIAALARRI 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 1101 KNATNELTKQSSNVKTLKFELLAKEEHIKEMHEKISRMERDI-TMKRHLIEDLKFRQKVNLESNKSFsEMLQNLDKKVKT 1179
Cdd:COG4942 72 RALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALyRLGRQPPLALLLSPEDFLDAVRRL-QYLKYLAPARRE 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 1180 LTEECSNKKVSIDSLKQRLNVAVKEKSQYEQMYQKSKEELEK----KDLKLTLLVSRISETESAMAEIETAAsKQLQELA 1255
Cdd:COG4942 151 QAEELRADLAELAALRAELEAERAELEALLAELEEERAALEAlkaeRQKLLARLEKELAELAAELAELQQEA-EELEALI 229
|
250
....*....|....*...
gi 2462625069 1256 LQSEQVLEGAQKTLLLAN 1273
Cdd:COG4942 230 ARLEAEAAAAAERTPAAG 247
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
530-813 |
2.13e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 2.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 530 KLRKAERKIENLEKALQLKSQENDELRDAHEK-RKERLQMLQtnYRAVKEQLKQWEegsgMTEIRKIKRADPQQLRQEDS 608
Cdd:TIGR02169 171 KKEKALEELEEVEENIERLDLIIDEKRQQLERlRREREKAER--YQALLKEKREYE----GYELLKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 609 davwnelayfkrenqelmiQKMNLEEELDELKVHISIDKAAIQELNRcVAERREEQLFRSGEDDEVKRSTPEKNGKEMLE 688
Cdd:TIGR02169 245 -------------------QLASLEEELEKLTEEISELEKRLEEIEQ-LLEELNKKIKDLGEEEQLRVKEKIGELEAEIA 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 689 QTLQKVIELENRLKSFEKRSRKLKEgnkklmkENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTELQVKISELE 768
Cdd:TIGR02169 305 SLERSIAEKERELEDAEERLAKLEA-------EIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVD 377
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 2462625069 769 TEVTSLRRQVAEA----NALRNENEELINPMEKSHQSADRAKSEMATMK 813
Cdd:TIGR02169 378 KEFAETRDELKDYreklEKLKREINELKRELDRLQEELQRLSEELADLN 426
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
605-810 |
2.34e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.23 E-value: 2.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 605 QEDSDAVWNELAYFKRENQELMIQKmnLEEELDELKVHISIDKAAIQELNrcvAERREEQLFRSGEDDEVKRStpekngK 684
Cdd:COG1196 219 KEELKELEAELLLLKLRELEAELEE--LEAELEELEAELEELEAELAELE---AELEELRLELEELELELEEA------Q 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 685 EMLEQTLQKVIELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTELQVKI 764
Cdd:COG1196 288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2462625069 765 SELETEVTSLRRQVAEANALRNENEELINPMEKSHQSADRAKSEMA 810
Cdd:COG1196 368 LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALL 413
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1036-1263 |
2.38e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.22 E-value: 2.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 1036 IKKLN-LDLAGLRKEKEDLLKKLESSS--EITSLAEEnsqvtfprIQVTSLSPSRSMDLEMKQLQYKLKNATNELTKQSS 1112
Cdd:PRK05771 3 PVRMKkVLIVTLKSYKDEVLEALHELGvvHIEDLKEE--------LSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLRE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 1113 NVKTLKFELLAK------------EEHIKEMHEKISRMERDITMKRHLIEDLKFRQKVNLE-----SNKSFSEMLQNLDK 1175
Cdd:PRK05771 75 EKKKVSVKSLEElikdveeelekiEKEIKELEEEISELENEIKELEQEIERLEPWGNFDLDlslllGFKYVSVFVGTVPE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 1176 KVKTLTEECSNKKVS--IDSLKQRLNVA-VKEKSQYEQMYQ----------------KSKEELEKKDLKLTLLVSRISET 1236
Cdd:PRK05771 155 DKLEELKLESDVENVeyISTDKGYVYVVvVVLKELSDEVEEelkklgferleleeegTPSELIREIKEELEEIEKERESL 234
|
250 260
....*....|....*....|....*..
gi 2462625069 1237 ESAMAEIetaaSKQLQELALQSEQVLE 1263
Cdd:PRK05771 235 LEELKEL----AKKYLEELLALYEYLE 257
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
502-787 |
2.89e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.95 E-value: 2.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 502 EGKHKEPPVKRSRSLSPKSSFTDSEelqklrkAERKIENLEKALQLKsQENDELRDAHEKRKERLQMLQTnyravkeqlk 581
Cdd:PRK02224 197 EEKEEKDLHERLNGLESELAELDEE-------IERYEEQREQARETR-DEADEVLEEHEERREELETLEA---------- 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 582 qweegsgmtEIRKIkradpqqlrQEDSDAVWNELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQElnrcVAERR 661
Cdd:PRK02224 259 ---------EIEDL---------RETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEA----VEARR 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 662 EEQlfrSGEDDEVKRStpekngkemLEQTLQKVIELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETR-- 739
Cdd:PRK02224 317 EEL---EDRDEELRDR---------LEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRre 384
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462625069 740 -----EKELEQIIKG--------------SKDVEKENTELQVKISELETEVTSLRRQVAEANALRNE 787
Cdd:PRK02224 385 eieelEEEIEELRERfgdapvdlgnaedfLEELREERDELREREAELEATLRTARERVEEAEALLEA 451
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
263-778 |
3.15e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.02 E-value: 3.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 263 KLRKQEAHLRKEKYSTDAKIKTFEDNLIEARKEVEVSQSKYNALSL---QLSNKQTELIQKDMDITLVRKELQELQNLYK 339
Cdd:pfam05483 82 KLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFeneKVSLKLEEEIQENKDLIKENNATRHLCNLLK 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 340 QNSTHTAQQA--------ELIQQLQVLNMDTQKVLRNQEDVHTAESISYQKLYNELHICFETTKSNEAMLRQSVTNLQDQ 411
Cdd:pfam05483 162 ETCARSAEKTkkyeyereETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQ 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 412 ----LLQKEQENAKLKEklqesqgaplplpqesdpdysaqvphrpslssLETLMVSQKSEIEYLQEKLKIANEKLSENIS 487
Cdd:pfam05483 242 vsllLIQITEKENKMKD--------------------------------LTFLLEESRDKANQLEEKTKLQDENLKELIE 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 488 ANKGFSRKSimtsaegkhKEPPVKRSRSLSPKSSFTDSEEL------QKLRKAERKIENLEKALQLKSQENDELRDAHEK 561
Cdd:pfam05483 290 KKDHLTKEL---------EDIKMSLQRSMSTQKALEEDLQIatkticQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCS 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 562 RKERLQMLQTNYRAVKEQLKQWEegsgMTEIRKIKRADPQQLRQEDSDAVWNELAYFKRENQELMIQKMNLEEELDELKv 641
Cdd:pfam05483 361 LEELLRTEQQRLEKNEDQLKIIT----MELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELK- 435
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 642 hisidkAAIQELNRCVAERREEQlfrsgEDDEVKRSTPEKNGKEMLEQTLQKVIELEN-RLKSFE--KRSRKLKEGNKKL 718
Cdd:pfam05483 436 ------GKEQELIFLLQAREKEI-----HDLEIQLTAIKTSEEHYLKEVEDLKTELEKeKLKNIEltAHCDKLLLENKEL 504
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 719 MKENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTELQVKISELETEVTSLRRQV 778
Cdd:pfam05483 505 TQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEV 564
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1092-1268 |
3.24e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.35 E-value: 3.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 1092 EMKQLQYKLKNATNELTKQSSNVKTLKFELLAKEEHIKEMHEKISRMERDITMKRHLIEDLKFRQKVN---------LES 1162
Cdd:COG3883 31 ELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSggsvsyldvLLG 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 1163 NKSFSEMLQNLD------KKVKTLTEECSNKKVSIDSLKQRLNVAVKEKSQYEQMYQKSKEELEKKDLKLTLLVSRISET 1236
Cdd:COG3883 111 SESFSDFLDRLSalskiaDADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAE 190
|
170 180 190
....*....|....*....|....*....|..
gi 2462625069 1237 ESAMAEIETAASKQLQELALQSEQVLEGAQKT 1268
Cdd:COG3883 191 EAAAEAQLAELEAELAAAEAAAAAAAAAAAAA 222
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
671-797 |
3.73e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.77 E-value: 3.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 671 DDEVKRSTPEKNGKEMLEQTlqkviELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQIikgs 750
Cdd:COG2433 383 EELIEKELPEEEPEAEREKE-----HEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEA---- 453
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 2462625069 751 KDVEKENTELQVKISELETEVTSLRRQVAEanaLRNENEELINPMEK 797
Cdd:COG2433 454 RSEERREIRKDREISRLDREIERLERELEE---ERERIEELKRKLER 497
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
524-789 |
4.09e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.65 E-value: 4.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 524 DSEELQKLRKAERKIENLEKALQLKSQEN-----DELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEGSGMTEIRKIKRA 598
Cdd:pfam17380 304 EKEEKAREVERRRKLEEAEKARQAEMDRQaaiyaEQERMAMERERELERIRQEERKRELERIRQEEIAMEISRMRELERL 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 599 dpQQLRQEDSDAVWNEL-AYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNRCVAER-------------REEQ 664
Cdd:pfam17380 384 --QMERQQKNERVRQELeAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERaremervrleeqeRQQQ 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 665 LFRSGEDDEVKRSTP-----EKNGKEMLEQTLQKVIE--LENRLKSF--EKRSRKLKEgnkKLMKENDflKSLLKQQQED 735
Cdd:pfam17380 462 VERLRQQEEERKRKKlelekEKRDRKRAEEQRRKILEkeLEERKQAMieEERKRKLLE---KEMEERQ--KAIYEEERRR 536
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 2462625069 736 TETREKELEQIIKGSKDVEKE---NTELQVKISELETEvTSLRRQVAEANALRNENE 789
Cdd:pfam17380 537 EAEEERRKQQEMEERRRIQEQmrkATEERSRLEAMERE-REMMRQIVESEKARAEYE 592
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
533-813 |
4.37e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.48 E-value: 4.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 533 KAERKIENLEKA-LQLKSQ-----ENDELRDAHEKRKERLQmlqTNYRAVKEQLKQWEEGSGMTEIRKIKRADPQQLRQE 606
Cdd:PRK04863 349 KIERYQADLEELeERLEEQnevveEADEQQEENEARAEAAE---EEVDELKSQLADYQQALDVQQTRAIQYQQAVQALER 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 607 DSDavWNELAYFKRENQELMI-----QKMNLEEELDELKVHISIDKAAiqelnrcvAERREE--QLFRSGEDdEVKRSTP 679
Cdd:PRK04863 426 AKQ--LCGLPDLTADNAEDWLeefqaKEQEATEELLSLEQKLSVAQAA--------HSQFEQayQLVRKIAG-EVSRSEA 494
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 680 EKNGKEMLEQ------TLQKVIELENRLKSFEKRSRK-------LKEGNKKLMKE---NDFLKSLLKQQQEDTETREKEL 743
Cdd:PRK04863 495 WDVARELLRRlreqrhLAEQLQQLRMRLSELEQRLRQqqraerlLAEFCKRLGKNlddEDELEQLQEELEARLESLSESV 574
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 744 EQIIKGSKDVEKENTELQVKISELETE----------VTSLRRQVAEANALRNENEELINPMEKSHQSADRAKSEMATMK 813
Cdd:PRK04863 575 SEARERRMALRQQLEQLQARIQRLAARapawlaaqdaLARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARK 654
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
526-816 |
4.93e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.20 E-value: 4.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 526 EELQKLRK--AERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEGSGMT-----EIRKIKRA 598
Cdd:PRK03918 372 EELERLKKrlTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCpvcgrELTEEHRK 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 599 DPQQLRQEDSDAVWNELAYFKRENQELMIQKMNLEEELDELKVHISIDKAA--IQELNRCVAERREEQLFRSGEDDEVKR 676
Cdd:PRK03918 452 ELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAeqLKELEEKLKKYNLEELEKKAEEYEKLK 531
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 677 STPEKNGKEM--LEQTLQKVIELENRLKSFEKRSRKLKEGNKKLMKEndfLKSLLKQQQEDTETREKELEQIIK---GSK 751
Cdd:PRK03918 532 EKLIKLKGEIksLKKELEKLEELKKKLAELEKKLDELEEELAELLKE---LEELGFESVEELEERLKELEPFYNeylELK 608
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462625069 752 DVEKENTELQVKISELETEVTSLRRQVAEANALRNENEELINPMEKSHQSADRAKSEMATMKVRS 816
Cdd:PRK03918 609 DAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSR 673
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
145-663 |
5.94e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.18 E-value: 5.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 145 SLVVEREKQKSEAKDRKVLEILQVKDAKIQEFEQRESvLKQEINDLVKRKIAVDEENAFLRKE--FSDLEKK-FKDKSQE 221
Cdd:PRK02224 240 DEVLEEHEERREELETLEAEIEDLRETIAETEREREE-LAEEVRDLRERLEELEEERDDLLAEagLDDADAEaVEARREE 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 222 IKDTKECVQNKEEQNRLVIKNLEEENKKLSTRCTDLLNDLEKLRKQEAHLRKEKYSTDAKIKTFEDNLIEARKEVEVSQS 301
Cdd:PRK02224 319 LEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 302 KYNALSLQLSNKQTELiqkdmdiTLVRKELQELQNlykqnsthtaQQAELIQQLQVLNMDTQKVLRNQEDVHTAESisYQ 381
Cdd:PRK02224 399 RFGDAPVDLGNAEDFL-------EELREERDELRE----------REAELEATLRTARERVEEAEALLEAGKCPEC--GQ 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 382 KLYNELHICFETTKsneamlRQSVTNLQDQLLQKEQENAKLKEKLQEsqgaplplpqesdpdysaqvphrpslssLETLm 461
Cdd:PRK02224 460 PVEGSPHVETIEED------RERVEELEAELEDLEEEVEEVEERLER----------------------------AEDL- 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 462 VSQKSEIEYLQEKLKIANEKLSENIS---------ANKGFSRKSIMTSAEGKHKEPPVKRSRSLSPKSSFTDSEelQKLR 532
Cdd:PRK02224 505 VEAEDRIERLEERREDLEELIAERREtieekreraEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELN--SKLA 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 533 KAERKIENLEKALQLKSqENDELRDAHEKRKERLQMLQTNYRAVKEQLKQweegsgmteirkiKRADPQQLRQE-DSDAV 611
Cdd:PRK02224 583 ELKERIESLERIRTLLA-AIADAEDEIERLREKREALAELNDERRERLAE-------------KRERKRELEAEfDEARI 648
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 2462625069 612 wnELAYFKRENQELMIQKMN-----LEEELDELKVHISIDKAAIQELNRcVAERREE 663
Cdd:PRK02224 649 --EEAREDKERAEEYLEQVEekldeLREERDDLQAEIGAVENELEELEE-LRERREA 702
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
490-640 |
6.11e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.00 E-value: 6.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 490 KGFSRKSIMTSAEGKHKEPPVKRSRSLSPKSSFTDSEELQKLRKAERKIENLEKalqlksqENDELRDAHEKRKERLQML 569
Cdd:COG2433 374 RGLSIEEALEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEA-------EVEELEAELEEKDERIERL 446
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462625069 570 QTNYRAVKEqlkqwEEGSGMTEIRKIKRadpqqlRQEDSDAVWNELAYFKRENQElmiqkmnLEEELDELK 640
Cdd:COG2433 447 ERELSEARS-----EERREIRKDREISR------LDREIERLERELEEERERIEE-------LKRKLERLK 499
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1092-1278 |
6.25e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.08 E-value: 6.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 1092 EMKQLQYKLKNATNELTKQSSNVKTLKFELLAKEEHIKEMHE-------KISRMERDITMKRHLIEDLKFRQKVNLESNK 1164
Cdd:COG1196 247 ELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAeeyellaELARLEQDIARLEERRRELEERLEELEEELA 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 1165 SFSEMLQNLDKKVKTLTEECSNKKVSIDSLKQRLNVAVKEKSQYEQMYQKSKEELEKKDLKLTLLVSRISETESAMAEIE 1244
Cdd:COG1196 327 ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELE 406
|
170 180 190
....*....|....*....|....*....|....
gi 2462625069 1245 TAASKQLQELALQSEQVLEGAQKTLLLANEKVEE 1278
Cdd:COG1196 407 EAEEALLERLERLEEELEELEEALAELEEEEEEE 440
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
153-358 |
7.03e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 40.65 E-value: 7.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 153 QKSEAKDRKVLEILQVKDAKIQEFEQRESVLKQEINDLvkrkiavDEENAFLRKEFSDLEKKFK---DKSQEIKDTKECV 229
Cdd:pfam07888 48 QAQEAANRQREKEKERYKRDREQWERQRRELESRVAEL-------KEELRQSREKHEELEEKYKelsASSEELSEEKDAL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 230 QNKEEQNRLVIKNLEEENKKLSTRCTDLLNDLEKLR---KQEAHLRKEKYSTDAKIKTfednliearkEVEVSQSKYNAL 306
Cdd:pfam07888 121 LAQRAAHEARIRELEEDIKTLTQRVLERETELERMKeraKKAGAQRKEEEAERKQLQA----------KLQQTEEELRSL 190
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2462625069 307 SLQLSNKQTELIQKDMDITLVRKELQELQNLYKQNSTHTAQQAELIQQLQVL 358
Cdd:pfam07888 191 SKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSL 242
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1090-1270 |
8.52e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.52 E-value: 8.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 1090 DLEMKQLQYKLKNATNELTKQSSNVKTLKFELLAKEEHIKEMHEKISRMERDITMKRHLIEDLKFRQKvNLESNKsfseM 1169
Cdd:COG1579 16 DSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLG-NVRNNK----E 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 1170 LQNLDKKVKTLTEEcsnkkvsIDSLKQRLNVAVKEKSQYEQMYQKSKEELEKKDlklTLLVSRISETESAMAEIEtaasK 1249
Cdd:COG1579 91 YEALQKEIESLKRR-------ISDLEDEILELMERIEELEEELAELEAELAELE---AELEEKKAELDEELAELE----A 156
|
170 180
....*....|....*....|.
gi 2462625069 1250 QLQELALQSEQVLEGAQKTLL 1270
Cdd:COG1579 157 ELEELEAEREELAAKIPPELL 177
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
205-792 |
9.63e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.34 E-value: 9.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 205 RKEFSDLEKKFKDKSQEIKDTKECVQNKEEQNRLVIKNLEEENKKLSTRCTDLLNDLEKLR----KQEAHLRKEKYSTDA 280
Cdd:TIGR00618 186 FAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTqkreAQEEQLKKQQLLKQL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 281 KIKTFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDITLVRKELQ----ELQNLYKQNSTHTAQQAELIQQLQ 356
Cdd:TIGR00618 266 RARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQskmrSRAKLLMKRAAHVKQQSSIEEQRR 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 357 VLNMDTQKVLRNQEdvhtaesisyqklYNELHICFETTKSNEAMLRQSVTNLQDQ---LLQKEQENAKLKEKLQESQGAP 433
Cdd:TIGR00618 346 LLQTLHSQEIHIRD-------------AHEVATSIREISCQQHTLTQHIHTLQQQkttLTQKLQSLCKELDILQREQATI 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 434 LPLPQESDPD----YSAQVPHRPSLSSLETLMV-------SQKSEIEYLQE-----KLKIANEKLSENISANKGFSRKSI 497
Cdd:TIGR00618 413 DTRTSAFRDLqgqlAHAKKQQELQQRYAELCAAaitctaqCEKLEKIHLQEsaqslKEREQQLQTKEQIHLQETRKKAVV 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 498 MTSAEGKHKEPPVKRSRSLSPKSSFTDSEELQ----KLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNY 573
Cdd:TIGR00618 493 LARLLELQEEPCPLCGSCIHPNPARQDIDNPGpltrRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSF 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 574 RAVKEQLKQWEEGSGMT--EIRKIKRADPQQLRQEDSDAVWNELAYFKRE----NQELMIQKMNLEEELDELKVH----- 642
Cdd:TIGR00618 573 SILTQCDNRSKEDIPNLqnITVRLQDLTEKLSEAEDMLACEQHALLRKLQpeqdLQDVRLHLQQCSQELALKLTAlhalq 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 643 --ISIDKAAIQELNRCVAERREEQLFRSGEDDEVKRSTPEKNGKEMLEQTLQKVIELENRLKS----FEKRSRKLKEGNK 716
Cdd:TIGR00618 653 ltLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEydreFNEIENASSSLGS 732
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462625069 717 KLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTELQVKISELETEVTSLRRQVAEANALRNENEELI 792
Cdd:TIGR00618 733 DLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEI 808
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
543-790 |
9.96e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 9.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 543 KALQLKSQENDELRDAHEKRKERLQMLQTNYRAVKEQLKQWEegsgmteiRKIKRAdpqqlrQEDSDAVWNELAYFKREN 622
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALE--------RRIAAL------ARRIRALEQELAALEAEL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 623 QELMIQKMNLEEELDELKVHISIDKAAIQELNRcvaERREEQLFRSGEDDEVKRSTpekngkEMLEQTLQkviELENRLK 702
Cdd:COG4942 86 AELEKEIAELRAELEAQKEELAELLRALYRLGR---QPPLALLLSPEDFLDAVRRL------QYLKYLAP---ARREQAE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462625069 703 SFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTELQVKISELETEVTSLRRQVAEAN 782
Cdd:COG4942 154 ELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
|
....*...
gi 2462625069 783 ALRNENEE 790
Cdd:COG4942 234 AEAAAAAE 241
|
|
| |
