|
Name |
Accession |
Description |
Interval |
E-value |
| GLE1 |
pfam07817 |
GLE1-like protein; The members of this family are sequences that are similar to the human ... |
413-661 |
4.33e-106 |
|
GLE1-like protein; The members of this family are sequences that are similar to the human protein GLE1. This protein is localized at the nuclear pore complexes and functions in poly(A)+ RNA export to the cytoplasm.
Pssm-ID: 462280 Cd Length: 234 Bit Score: 322.61 E-value: 4.33e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 413 SKDSQAKKIKMDLQKAATIPVSQISTIAdcrslvfmagSKLKEIFDKIHSLL-SGKPVQSGgrsvsvtLNPQGLDFVQYK 491
Cdd:pfam07817 1 KQDPELKKYRFQLKRAINPKVGQLSNSS----------EQLTDITNELNELLdSGKPVPVG-------HPQLAYIWILNF 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 492 LAEKFVKQGEEEVASHHEAAFPIAVVASGIWELHPRVGDLILAHLHKKCPYSVPFYPTFKEGMALEDYQRMLGYQV-KDS 570
Cdd:pfam07817 64 LAKAIVSQAETEVSVKPEAAFPLARVAVGLWSRHPELGDLLLARFVKKCPYLVPFYPPKTCGQDTEEYRKRLGYKRsDDG 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 571 KVEQQDNFLKRMSGMIRLYAAIIQLRWPYGNRQEIHPHGLNHGWRWLAQILNMEPLSDVTATLLFDFLEVCGNALMKQYQ 650
Cdd:pfam07817 144 KWETEDKYLERMSGIIRLYAAITQTPLPKSSKQNPHPHGLPIGWRWLARILNTEPLSNTTATLLGAFLEVAGNRLLQAYG 223
|
250
....*....|.
gi 2462624218 651 VQFWKMLILIK 661
Cdd:pfam07817 224 KQFIKLLQLIQ 234
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
153-365 |
8.03e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.26 E-value: 8.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 153 WQEEQERKVQALSEMASEQLKRFDEWKELKQhKEFQDLREVMEKSSREALGHQEKLKAEHRHRAKILNLKLREAEQQRVK 232
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELE-AELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 233 QAEQERLRKEEGQIRLRALyALQEEMLQLSQQLDASEQHKALLKVDLAAFQTRGNQLCSLISGIIRASSEssypTAESQA 312
Cdd:COG1196 315 EERLEELEEELAELEEELE-ELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEE----LAEELL 389
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2462624218 313 EAERALREMRDLLMNLGQEITRACEDKRRQDEEEAQVKLQEAQMQQGPEAHKE 365
Cdd:COG1196 390 EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEE 442
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
143-365 |
4.42e-08 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 56.11 E-value: 4.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 143 RMKGTEGLRLWQEEQERKVQALSEMASEQLKRFDEWKELKQHKEFQDLREVMEkssrealghqeklkaehrhrakilnlk 222
Cdd:pfam15709 354 RREQEEQRRLQQEQLERAEKMREELELEQQRRFEEIRLRKQRLEEERQRQEEE--------------------------- 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 223 lrEAEQQRVKQAEQERLRKEEGQIRlRALYALQEEMLQ-LSQQLDASEQHKALLKVDLAAFQTRGNQLcslisgiirASS 301
Cdd:pfam15709 407 --ERKQRLQLQAAQERARQQQEEFR-RKLQELQRKKQQeEAERAEAEKQRQKELEMQLAEEQKRLMEM---------AEE 474
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462624218 302 ESSYPTAESQAEAERALREMrdllmnlgqeitracEDKRRQDEEEAQVKLQEAqMQQGPEAHKE 365
Cdd:pfam15709 475 ERLEYQRQKQEAEEKARLEA---------------EERRQKEEEAARLALEEA-MKQAQEQARQ 522
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
156-358 |
1.36e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.94 E-value: 1.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 156 EQERKVQALSEmaseQLKRFDEWKELKQHKEFQDLREVMEKSSREALGHQEKLKAEHRH--------RAKILNLKLREAE 227
Cdd:COG1196 210 EKAERYRELKE----ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAEleaeleelRLELEELELELEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 228 QQRVKQAEQERLRKEEGQIRLRA--LYALQEEMLQLSQQLDASEQHKALLKVDLAAFQTRGNQLCSLISGIIRASSESsy 305
Cdd:COG1196 286 AQAEEYELLAELARLEQDIARLEerRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEA-- 363
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2462624218 306 ptAESQAEAERALREMRDLLMNLGQEITRACEDKRRQDEEEAQVKLQEAQMQQ 358
Cdd:COG1196 364 --EEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLE 414
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
154-355 |
1.69e-05 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 48.28 E-value: 1.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 154 QEEQERKVQALSEMASEQLKRFD---EWKELKQHKEFQDLREVMEKSSREALGHQEKLKAEHRHRAKILNLKlREAEQQR 230
Cdd:NF041483 559 REETERAIAARQAEAAEELTRLHteaEERLTAAEEALADARAEAERIRREAAEETERLRTEAAERIRTLQAQ-AEQEAER 637
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 231 VK-----QAEQERLRKEEGQIRLRALYALQEEMLQLSQQLDASEqhkalLKVDLAAFQTRgnqlcslisgiirASSESSY 305
Cdd:NF041483 638 LRteaaaDASAARAEGENVAVRLRSEAAAEAERLKSEAQESADR-----VRAEAAAAAER-------------VGTEAAE 699
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2462624218 306 PTAESQAEAERALREMRDLLMNLGQEITRACEDKRRQDEE---EAQVKLQEAQ 355
Cdd:NF041483 700 ALAAAQEEAARRRREAEETLGSARAEADQERERAREQSEEllaSARKRVEEAQ 752
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
110-277 |
2.52e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.81 E-value: 2.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 110 KGKDESQHTESMVLQSSRGIKVEGcVRMYELvHRMKGTEGLRLWQEEQERKVQALsEMASEQLKRFDEWKELKQHKEFQD 189
Cdd:pfam17380 427 AEQEEARQREVRRLEEERAREMER-VRLEEQ-ERQQQVERLRQQEEERKRKKLEL-EKEKRDRKRAEEQRRKILEKELEE 503
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 190 LREVM--EKSSREALghqEKlKAEHRHRAKILNLKLREAEQQRVKQAEQERLRKEEGQIRL----RALYALQEEMLQLSQ 263
Cdd:pfam17380 504 RKQAMieEERKRKLL---EK-EMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKateeRSRLEAMEREREMMR 579
|
170
....*....|....
gi 2462624218 264 QLDASEQHKALLKV 277
Cdd:pfam17380 580 QIVESEKARAEYEA 593
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
224-358 |
4.79e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.85 E-value: 4.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 224 REAEQQRVKQAEQERLRKEEGQIRLRALYALQEEMLQLSQQLDASEQHKALLKVDLAAFQTRGNQLcslisgiirasses 303
Cdd:COG1196 207 RQAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEEL-------------- 272
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 2462624218 304 syptAESQAEAERALREMRDLLMNLGQEITRACEDKRRQDEEEAQVKLQEAQMQQ 358
Cdd:COG1196 273 ----RLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEE 323
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
145-380 |
6.13e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.67 E-value: 6.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 145 KGTEGLRLWQEEQERKVQAL------SEMASEQLKRfdewKELKQHKEFQDLREVMEKSSREAlgHQEKLKAEHRHRAKi 218
Cdd:PTZ00121 1633 KKVEQLKKKEAEEKKKAEELkkaeeeNKIKAAEEAK----KAEEDKKKAEEAKKAEEDEKKAA--EALKKEAEEAKKAE- 1705
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 219 lnlKLREAEQQRVKQAEQERLRKEEGQIRLRALYALQEEMLQLSQQLDASEQHKALLKVDLAAFQTRGNQLCSLISGIIR 298
Cdd:PTZ00121 1706 ---ELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIE 1782
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 299 asSESSYPTAESQAEAERALREMRDLLMNL---GQEITRACEDKRRQDEEEAQVKLQEAQMQQGP----EAHKEPPAPSQ 371
Cdd:PTZ00121 1783 --EELDEEDEKRRMEVDKKIKDIFDNFANIiegGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEadafEKHKFNKNNEN 1860
|
....*....
gi 2462624218 372 GPGGKQNED 380
Cdd:PTZ00121 1861 GEDGNKEAD 1869
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
136-385 |
6.80e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.47 E-value: 6.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 136 RMYELVHRMKGTEG-LRLWQEEQERKVQALSEMASEQLKRFDEWKELKQHKEFQDLREVMEKSSREALGHQEKLKAEHRH 214
Cdd:COG1196 289 EEYELLAELARLEQdIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 215 RAKILNLKLREAEQQRvKQAEQERLRKEEgqirlralyALQEEMLQLSQQLDASEQHKALLKVDLAAFQTRGNQLCSLIS 294
Cdd:COG1196 369 EAEAELAEAEEELEEL-AEELLEALRAAA---------ELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEE 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 295 GIIRASSESsyptAESQAEAERALREMRDLLMNLGQEITRAcEDKRRQDEEEAQVKLQEAQMQQgpEAHKEPPAPSQGPG 374
Cdd:COG1196 439 EEEEALEEA----AEEEAELEEEEEALLELLAELLEEAALL-EAALAELLEELAEAAARLLLLL--EAEADYEGFLEGVK 511
|
250
....*....|.
gi 2462624218 375 GKQNEDLQVKV 385
Cdd:COG1196 512 AALLLAGLRGL 522
|
|
| DUF4175 |
pfam13779 |
Domain of unknown function (DUF4175); |
222-402 |
9.91e-05 |
|
Domain of unknown function (DUF4175);
Pssm-ID: 463981 [Multi-domain] Cd Length: 833 Bit Score: 45.75 E-value: 9.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 222 KLREAEQQRVKQAEQERLRKEegqirLRAlyALQEEMLQLSQQLDASEQHKALlKVDLAAFQTRGNQLCSLISGIIRASS 301
Cdd:pfam13779 497 RLSEALERGASDEEIAKLMQE-----LRE--ALDDYMQALAEQAQQNPQDLQQ-PDDPNAQEMTQQDLQRMLDRIEELAR 568
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 302 ESSyptaesQAEAERALREMRDLLMNLGQEITRACEDKRRQDEEEAQVKLQE-AQMQQG--PEAHKEPPAPSQGPGGKQN 378
Cdd:pfam13779 569 SGR------RAEAQQMLSQLQQMLENLQAGQPQQQQQQGQSEMQQAMDELGDlLREQQQllDETFRQLQQQGGQQQGQPG 642
|
170 180
....*....|....*....|....
gi 2462624218 379 EDLQVKVQDITMQWYQQLQDASMQ 402
Cdd:pfam13779 643 QQGQQGQGQQPGQGGQQPGAQMPP 666
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
155-456 |
1.12e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.82 E-value: 1.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 155 EEQERKVQALSEMASEQLKRFDewKELKQHKEFQDLREVMEKSSREALGHQEKLKAEHRHRAKILNLKLREAEQQRVK-Q 233
Cdd:TIGR02168 711 EEELEQLRKELEELSRQISALR--KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEElE 788
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 234 AEQERLRKEEGQIRlRALYALQEEMLQLSQQLDASEQHKALLKVDLAAFQTRgnqlcslisgiIRASSESSYPTAESQAE 313
Cdd:TIGR02168 789 AQIEQLKEELKALR-EALDELRAELTLLNEEAANLRERLESLERRIAATERR-----------LEDLEEQIEELSEDIES 856
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 314 AERALREMRDLLMNLGQEITRACEDKRRQDEEEAQVKLQEAQMQqgpeahkeppapsqgpggKQNEDLQVKVQDITmQWY 393
Cdd:TIGR02168 857 LAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELS------------------EELRELESKRSELR-REL 917
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462624218 394 QQLQDASMQCVLTFEGLTNSKDSQAKKI----KMDLQKAATIPVSQISTIADCRSLVFMAGSKLKEI 456
Cdd:TIGR02168 918 EELREKLAQLELRLEGLEVRIDNLQERLseeySLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
191-329 |
1.49e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.31 E-value: 1.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 191 REVMEKSSREALGHQEKLKAEHRHRAKILNLKLREAEQQRVKQAEQERLRKEEGQIRLRALYALQEEMLQLSQQLDASEQ 270
Cdd:COG1196 642 LAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEEL 721
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 2462624218 271 HKALLKVDLAAFQTRGNQLCSLISGIIRASSESSYPTAESQAEAERALREMRDLLMNLG 329
Cdd:COG1196 722 EEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALG 780
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
154-427 |
1.64e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.13 E-value: 1.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 154 QEEQERKVQALSEmaSEQLKRFDEWKELKQHKEFQDLREVMEKSSREALGHQEKL-------KAEHRHRA---KILNLK- 222
Cdd:PTZ00121 1505 AAEAKKKADEAKK--AEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELkkaeekkKAEEAKKAeedKNMALRk 1582
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 223 ---LREAEQQRV----------KQAEQERLRKEEgQIRLRA---------------LYALQEEMLQLSQQLDASEQHKAL 274
Cdd:PTZ00121 1583 aeeAKKAEEARIeevmklyeeeKKMKAEEAKKAE-EAKIKAeelkkaeeekkkveqLKKKEAEEKKKAEELKKAEEENKI 1661
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 275 LKVDLAAFQTRGNQLCSLisgiIRASSESSYPTAESQAEAERALREMRDLLMNLGQEITRAceDKRRQDEEEAQVKLQEA 354
Cdd:PTZ00121 1662 KAAEEAKKAEEDKKKAEE----AKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKA--EELKKAEEENKIKAEEA 1735
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462624218 355 QMQQGPEAHKEPPApsqgpggKQNEDLQVKVQDITMQWYQQLQDASMQCVLTFEGLTNSKDsqaKKIKMDLQK 427
Cdd:PTZ00121 1736 KKEAEEDKKKAEEA-------KKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEED---EKRRMEVDK 1798
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
175-416 |
2.53e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.67 E-value: 2.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 175 FDEWKElkqhKEFQDLREVMEKSSREALGHQEKLKAEHRHRakilnlklREAEQQRVKQAEQERLRKEEGQIRLRALYAL 254
Cdd:TIGR02169 168 FDRKKE----KALEELEEVEENIERLDLIIDEKRQQLERLR--------REREKAERYQALLKEKREYEGYELLKEKEAL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 255 QEEMLQLSQQLDASEQHKALLKVDLAAFQTRGNQLCSLISGI---IRASSESSYPT-----AESQAEAERA-------LR 319
Cdd:TIGR02169 236 ERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELnkkIKDLGEEEQLRvkekiGELEAEIASLersiaekER 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 320 EMRDL---LMNLGQEITRACEDKRRQDEEEAQVKLQEAQMQQGPEAHKEppapsqgpggkQNEDLQVKVQDITMQwYQQL 396
Cdd:TIGR02169 316 ELEDAeerLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKE-----------ELEDLRAELEEVDKE-FAET 383
|
250 260
....*....|....*....|
gi 2462624218 397 QDASMQCVLTFEGLTNSKDS 416
Cdd:TIGR02169 384 RDELKDYREKLEKLKREINE 403
|
|
| Caldesmon |
pfam02029 |
Caldesmon; |
109-249 |
2.88e-04 |
|
Caldesmon;
Pssm-ID: 460421 [Multi-domain] Cd Length: 495 Bit Score: 44.09 E-value: 2.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 109 TKGKDESQHTESMVLQSSRGIKVEGCVRMYELVHRMKGTEGLRLWQEEQERKVQALSEMASEQLKRFDEWKELKQHKEFQ 188
Cdd:pfam02029 184 IKKEKKVKYESKVFLDQKRGHPEVKSQNGEEEVTKLKVTTKRRQGGLSQSQEREEEAEVFLEAEQKLEELRRRRQEKESE 263
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462624218 189 DLrEVMEKSSREALGHQEKLKAEHRHRAKIlnlklREAEQQRVKQAEQER-LRKEEGQIRLR 249
Cdd:pfam02029 264 EF-EKLRQKQQEAELELEELKKKREERRKL-----LEEEEQRRKQEEAERkLREEEEKRRMK 319
|
|
| DUF4659 |
pfam15558 |
Domain of unknown function (DUF4659); This family of proteins is found in eukaryotes. Proteins ... |
148-358 |
6.11e-04 |
|
Domain of unknown function (DUF4659); This family of proteins is found in eukaryotes. Proteins in this family are typically between 427 and 674 amino acids in length. There are two completely conserved residues (D and I) that may be functionally important.
Pssm-ID: 464768 [Multi-domain] Cd Length: 374 Bit Score: 42.72 E-value: 6.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 148 EGLRLWQEEQErkvQALSEMASEQLKRFDEWK--ELKQHKEFQDLREVMEKSSREALgHQEKLKAEHRHRAKILNLKLRE 225
Cdd:pfam15558 58 QSQEQWQAEKE---QRKARLGREERRRADRREkqVIEKESRWREQAEDQENQRQEKL-ERARQEAEQRKQCQEQRLKEKE 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 226 AEQQRVK-QAEQERLRKEEGQIRLRALYALQEEmlQLSQQLDASEQHKALLKVDLAAFQTRGNQLcslisgIIRASSESS 304
Cdd:pfam15558 134 EELQALReQNSLQLQERLEEACHKRQLKEREEQ--KKVQENNLSELLNHQARKVLVDCQAKAEEL------LRRLSLEQS 205
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462624218 305 YPTAES--QAEAERALREMRDLLMNLGQEITRACEDKRRQDEE-----EAQVKLQEAQMQQ 358
Cdd:pfam15558 206 LQRSQEnyEQLVEERHRELREKAQKEEEQFQRAKWRAEEKEEErqehkEALAELADRKIQQ 266
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
209-365 |
8.20e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 8.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 209 KAEHRHRAKILNLKLREAEQQrVKQAEQ--ERLRKEEGqirlraLYALQEEMLQLSQQLDASEQHKALLKVDLAAFQTRG 286
Cdd:COG3206 170 REEARKALEFLEEQLPELRKE-LEEAEAalEEFRQKNG------LVDLSEEAKLLLQQLSELESQLAEARAELAEAEARL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 287 NQLCSLISGIIRASSE-------SSYPTAESQAEAERA----------------LREMRDLLMNLGQEITRACED----- 338
Cdd:COG3206 243 AALRAQLGSGPDALPEllqspviQQLRAQLAELEAELAelsarytpnhpdvialRAQIAALRAQLQQEAQRILASleael 322
|
170 180 190
....*....|....*....|....*....|
gi 2462624218 339 ---KRRQDEEEAQVKLQEAQMQQGPEAHKE 365
Cdd:COG3206 323 ealQAREASLQAQLAQLEARLAELPELEAE 352
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
154-376 |
1.16e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 154 QEEQERKVQALSEMASEQLKRFDEWKelKQHKEFQDLREVMEKssreALGHQEKLKAEHRHRAKILNLKLREAEQQRVKQ 233
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALK--KEEKALLKQLAALER----RIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 234 AEQERLRKEEGQIRLRALYAL-----------QEEMLQLSQQLDASEQHKALLKVDLAAFQTRGNQLCSLISGIIRASSE 302
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLgrqpplalllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462624218 303 SSYPTAE---SQAEAERALREMRDLLMNLGQEIT--RACEDKRRQDEEEAQVKLQEAQMQQGPEAHKEPPAPSQGPGGK 376
Cdd:COG4942 176 LEALLAEleeERAALEALKAERQKLLARLEKELAelAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGK 254
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
151-371 |
1.28e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.03 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 151 RLWQEEQERKVQalsemasEQLKRFDEWKELKQHKEFQDLREVMEKSSREalghQEKLKAEHRHRAKILNLKLREAEQQR 230
Cdd:pfam17380 405 KILEEERQRKIQ-------QQKVEMEQIRAEQEEARQREVRRLEEERARE----MERVRLEEQERQQQVERLRQQEEERK 473
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 231 VKQAEQERLRKEEGQIRLRALYALQEEMLQLSQQLDASEQHKALLKVDLAAFQTrgnqlcslisgiiRASSESSYPTAES 310
Cdd:pfam17380 474 RKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQK-------------AIYEEERRREAEE 540
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462624218 311 QAEAERALREMRdllmNLGQEITRACEDKRRQDEEEAQVKLQEaQMQQGPEAHKEPPAPSQ 371
Cdd:pfam17380 541 ERRKQQEMEERR----RIQEQMRKATEERSRLEAMEREREMMR-QIVESEKARAEYEATTP 596
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
156-281 |
1.63e-03 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 41.33 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 156 EQERKVQAlsEMASEQLKRfdewkelKQHKEFQDLREVMEKssREALGHQEKLKAEHRHRAKilnLKLREAEQQRVKQAE 235
Cdd:PRK09510 78 EEQRKKKE--QQQAEELQQ-------KQAAEQERLKQLEKE--RLAAQEQKKQAEEAAKQAA---LKQKQAEEAAAKAAA 143
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 2462624218 236 QERLRKEEGQIRLRALYALQEEMLQLSQQLDASEQHKALLKVDLAA 281
Cdd:PRK09510 144 AAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEA 189
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
205-358 |
2.34e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 2.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 205 QEKLKAEHRHRAKILNLKLREAEQQRVKQAE---QERLRKEEGQIRLRALY----ALQEEMLQLSQQLDASEQHKALLKV 277
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELeelREELEKLEKLLQLLPLYqeleALEAELAELPERLEELEERLEELRE 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 278 DLAAFQTRGNQLCSLISGIIRASSESSYPTAESQAEAERALREMRDLLMNLGQEITRACE--DKRRQDEEEAQVKLQEAQ 355
Cdd:COG4717 161 LEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEelEELEEELEQLENELEAAA 240
|
...
gi 2462624218 356 MQQ 358
Cdd:COG4717 241 LEE 243
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
156-358 |
2.54e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.48 E-value: 2.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 156 EQERKVQALSEMASEQLKRfdewkeLKQhKEFQdLREVMEKssREALGHQEklkAEHRHRAkilNLKLREAEQQRVKQAE 235
Cdd:COG3096 934 EQFEQLQADYLQAKEQQRR------LKQ-QIFA-LSEVVQR--RPHFSYED---AVGLLGE---NSDLNEKLRARLEQAE 997
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 236 QERLRKEEgqiRLRALYALQEEMLQLSQQLDASEQHKALLkvdLAAFQTRGNQLcslisGIirassessypTAESQAEaE 315
Cdd:COG3096 998 EARREARE---QLRQAQAQYSQYNQVLASLKSSRDAKQQT---LQELEQELEEL-----GV----------QADAEAE-E 1055
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2462624218 316 RALREMRDLLMNLGQeiTRAcedkrRQDEEEAQVKLQEAQMQQ 358
Cdd:COG3096 1056 RARIRRDELHEELSQ--NRS-----RRSQLEKQLTRCEAEMDS 1091
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
148-325 |
3.62e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.71 E-value: 3.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 148 EGLRLWQEEQERKVQALSE----------MASEQLKRFDEWKELKQHKEFQDLREVMEKSSREALGHQEKLKAeHRHRAK 217
Cdd:PRK04863 438 DNAEDWLEEFQAKEQEATEellsleqklsVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRH-LAEQLQ 516
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 218 ILNLKLREAEQQRVKQAEQERLRKEEGQiRLRALYALQEEMLQLSQQLDAS------------------EQHKALLKVDL 279
Cdd:PRK04863 517 QLRMRLSELEQRLRQQQRAERLLAEFCK-RLGKNLDDEDELEQLQEELEARleslsesvsearerrmalRQQLEQLQARI 595
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462624218 280 A----------AFQTRGNQLCSlISGIIRASSESSYPTAESQAEAERALREMRDLL 325
Cdd:PRK04863 596 QrlaarapawlAAQDALARLRE-QSGEEFEDSQDVTEYMQQLLERERELTVERDEL 650
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
135-387 |
3.81e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.89 E-value: 3.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 135 VRMYELVHRMKGTEGLRLWQEEQERKVQALSEMASEQLKRFDEWKELKQHKEFQDLREVMEKSSREALGHQEKLKAEHRH 214
Cdd:PTZ00121 1217 ARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAK 1296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 215 RA----KILNLKlREAEQQRvkQAEQERLRKEEGQIRLRALYALQEEmlqlSQQLDASEQHKALLKVDLAAFQTRGNQLC 290
Cdd:PTZ00121 1297 KAeekkKADEAK-KKAEEAK--KADEAKKKAEEAKKKADAAKKKAEE----AKKAAEAAKAEAEAAADEAEAAEEKAEAA 1369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 291 SLISGIIRASSESSYPTAESQAEAERALREMRDlLMNLGQEITRACEDKRRQDE---EEAQVKLQEAQMQQGPEAHKEPP 367
Cdd:PTZ00121 1370 EKKKEEAKKKADAAKKKAEEKKKADEAKKKAEE-DKKKADELKKAAAAKKKADEakkKAEEKKKADEAKKKAEEAKKADE 1448
|
250 260
....*....|....*....|
gi 2462624218 368 APSQGPGGKQNEDLQVKVQD 387
Cdd:PTZ00121 1449 AKKKAEEAKKAEEAKKKAEE 1468
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
185-346 |
4.49e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 4.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 185 KEFQDLREVMEKSSREALGHQEKLKAEHRHRAKILNLKLREAEQQRVKQAEQERLRKEE-------GQIRLRALY----A 253
Cdd:COG4913 617 AELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAelerldaSSDDLAALEeqleE 696
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 254 LQEEMLQLSQQLDASEQHKALLKVDLAAFQTRGNQLCSLISGIIRASSESSYPTAESQAEAERALREMRDLLMNLGQEIT 333
Cdd:COG4913 697 LEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERID 776
|
170
....*....|...
gi 2462624218 334 RAcEDKRRQDEEE 346
Cdd:COG4913 777 AL-RARLNRAEEE 788
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
154-365 |
5.44e-03 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 39.52 E-value: 5.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 154 QEEQERKVQALSEMASEQLKRFDEWKELKQHKEFQDLREVME----KSSREALGHQEKLKAEHRhRAKILNLKLREAEQQ 229
Cdd:pfam13868 118 AEEKLEKQRQLREEIDEFNEEQAEWKELEKEEEREEDERILEylkeKAEREEEREAEREEIEEE-KEREIARLRAQQEKA 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 230 RVKQAEQERLRKE------EGQIRLRALYALQEEMLQLSQQLDASEQHKALLKVDLAAFQTRGNQLCSLisgIIRASSEs 303
Cdd:pfam13868 197 QDEKAERDELRAKlyqeeqERKERQKEREEAEKKARQRQELQQAREEQIELKERRLAEEAEREEEEFER---MLRKQAE- 272
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462624218 304 syptAESQAEAERALREMRDLlmNLGQEITRACEDKRRQDEEEAQVKLQEAQMQQGPEAHKE 365
Cdd:pfam13868 273 ----DEEIEQEEAEKRRMKRL--EHRRELEKQIEEREEQRAAEREEELEEGERLREEEAERR 328
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
175-358 |
5.46e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 5.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 175 FDEWKELKQHkeFQDLREVmekssrealgHQEKLKAehRHRAKILnLKLREAEQQRvkQAEQERLRKEEGQIRLRALYAL 254
Cdd:COG4913 224 FEAADALVEH--FDDLERA----------HEALEDA--REQIELL-EPIRELAERY--AAARERLAELEYLRAALRLWFA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 255 QEEMLQLSQQLDASEQHKALLKVDLAAFQTRgnqlcslisgiirassessyptaesQAEAERALREMRDLLMNL-GQEIT 333
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEAR-------------------------LDALREELDELEAQIRGNgGDRLE 341
|
170 180
....*....|....*....|....*
gi 2462624218 334 RACEDKRRQDEEEAQVKLQEAQMQQ 358
Cdd:COG4913 342 QLEREIERLERELEERERRRARLEA 366
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
157-345 |
5.92e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 39.81 E-value: 5.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 157 QERKVQALS---EMASEQLKrfDEWKELKQHKEfqDLREVMEKSS---------REALGHQEKLkaehrhrakILNLKLR 224
Cdd:pfam10174 392 KERKINVLQkkiENLQEQLR--DKDKQLAGLKE--RVKSLQTDSSntdtalttlEEALSEKERI---------IERLKEQ 458
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 225 EAEQQRVKQAEQERLRKEEGQIRlRALYALQEEMLQLSQQLDASEQHKALLKVDLAAFQTRGNQLCSLISGIIRASS--E 302
Cdd:pfam10174 459 REREDRERLEELESLKKENKDLK-EKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSklE 537
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2462624218 303 SSYPTAESQAEAERALREMRDLLMNLGQEITRACEDKRRQDEE 345
Cdd:pfam10174 538 NQLKKAHNAEEAVRTNPEINDRIRLLEQEVARYKEESGKAQAE 580
|
|
| Caldesmon |
pfam02029 |
Caldesmon; |
148-353 |
6.81e-03 |
|
Caldesmon;
Pssm-ID: 460421 [Multi-domain] Cd Length: 495 Bit Score: 39.47 E-value: 6.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 148 EGLRLWQEEQERKVQALSEMASEQLKRFDE--------WKELKQHKEFQDLREVMEKSSREALGHQEKLKAEHRHRAKIL 219
Cdd:pfam02029 62 EAFLDRTAKREERRQKRLQEALERQKEFDPtiadekesVAERKENNEEEENSSWEKEEKRDSRLGRYKEEETEIREKEYQ 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 220 NLKLREAEQQRVKQAEQERLRKEEGQIRLRALYALQEEMLQ-LSQQLDASEQHKALL---------KVDLAAFQTRGNQL 289
Cdd:pfam02029 142 ENKWSTEVRQAEEEGEEEEDKSEEAEEVPTENFAKEEVKDEkIKKEKKVKYESKVFLdqkrghpevKSQNGEEEVTKLKV 221
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462624218 290 CSLISGIIRASSESSYPTAESQAEAERALREMRdllmNLGQEITRACEDKRRQDEEEAQVKLQE 353
Cdd:pfam02029 222 TTKRRQGGLSQSQEREEEAEVFLEAEQKLEELR----RRRQEKESEEFEKLRQKQQEAELELEE 281
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
156-356 |
7.56e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 39.49 E-value: 7.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 156 EQERKVQALSEMASEQLKRFDEWKElkQHKEFQDLREVMEKSsREALGHQeklKAEHRHRAKILNLKLREAEQQRV-KQA 234
Cdd:pfam07888 77 ELESRVAELKEELRQSREKHEELEE--KYKELSASSEELSEE-KDALLAQ---RAAHEARIRELEEDIKTLTQRVLeRET 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462624218 235 EQERLRKEEGQIrLRALYALQEEMLQLSQQLDASEQHKALLKVD-------LAAFQTRGNQLCSLISGIIRASSESSYPT 307
Cdd:pfam07888 151 ELERMKERAKKA-GAQRKEEEAERKQLQAKLQQTEEELRSLSKEfqelrnsLAQRDTQVLQLQDTITTLTQKLTTAHRKE 229
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462624218 308 AESQAEAERaLREMRDLLMN-------LGQEITRACEDKRRQDEEEAQVKLQEAQM 356
Cdd:pfam07888 230 AENEALLEE-LRSLQERLNAserkvegLGEELSSMAAQRDRTQAELHQARLQAAQL 284
|
|
| |
