|
Name |
Accession |
Description |
Interval |
E-value |
| TIR |
smart00255 |
Toll - interleukin 1 - resistance; |
619-761 |
3.70e-33 |
|
Toll - interleukin 1 - resistance;
:
Pssm-ID: 214587 [Multi-domain] Cd Length: 140 Bit Score: 124.36 E-value: 3.70e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 619 RFHAFISYSEHDslWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVFSPNFVQNEWCHYEFYF 698
Cdd:smart00255 1 EYDVFISYSGKE--DVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVA 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462599095 699 AHHNLFHENSDHIILILLEPIPFYcIPTRYHKLKALLeKKAYLEWPKDRRKcgLFWANLRAAI 761
Cdd:smart00255 79 ALENALEEGGLRVIPIFYEVIPSD-VRKQPGKFRKVF-KKNYLKWPEDEKE--QFWKKALYAV 137
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
334-510 |
2.43e-14 |
|
Leucine-rich repeat (LRR) protein [Transcription];
:
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 75.74 E-value: 2.43e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 334 TKFQYLNFANNILTDeLFKRTLQLPHLKTLILNGNKLETLSlvSCFANNTPLEHLDLSQNLLQHKNDENCSWPEtVVNMN 413
Cdd:COG4886 113 TNLESLDLSGNQLTD-LPEELANLTNLKELDLSNNQLTDLP--EPLGNLTNLKSLDLSNNQLTDLPEELGNLTN-LKELD 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 414 LSYNKLSDsvfrcLPKSI------QILDLNNNQIQTVPKETIHLMALRELNIAFNFLTDLPGCSHFSRLSVLNIEMNFIl 487
Cdd:COG4886 189 LSNNQITD-----LPEPLgnltnlEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLTDLPELGNLTNLEELDLSNNQL- 262
|
170 180
....*....|....*....|...
gi 2462599095 488 sPSLDFVQSCQEVKTLNAGRNPF 510
Cdd:COG4886 263 -TDLPPLANLTNLKTLDLSNNQL 284
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
58-115 |
3.44e-10 |
|
Leucine rich repeat;
:
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 56.38 E-value: 3.44e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462599095 58 SKLRVLILCHNRIQQLDLKTFEFNKELRYLDLSNNRLKSV---TWYLLAGLRYLDLSFNDF 115
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLspgAFSGLPSLRYLDLSGNRL 61
|
|
| LRR super family |
cl34836 |
Leucine-rich repeat (LRR) protein [Transcription]; |
19-253 |
7.41e-09 |
|
Leucine-rich repeat (LRR) protein [Transcription];
The actual alignment was detected with superfamily member COG4886:
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 58.79 E-value: 7.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 19 NCSNMSLRKVPADLTPAT--TTLDLSYNLLFQLqSSDFHSVSKLRVLILCHNRIQQLDlKTFEFNKELRYLDLSNNRLKS 96
Cdd:COG4886 165 DLSNNQLTDLPEELGNLTnlKELDLSNNQITDL-PEPLGNLTNLEELDLSGNQLTDLP-EPLANLTNLETLDLSNNQLTD 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 97 VTW-YLLAGLRYLDLSFNDFDTMPiceEAGNMSHLEILGLSGAKIQKSDFQKISHLHLNTVFLGFRTLPHYEE----GSL 171
Cdd:COG4886 243 LPElGNLTNLEELDLSNNQLTDLP---PLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLEllilLLL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 172 PILNTTKLHIVLPMDTNFWVLLRDGIKTSKILEMTNIDGKSQFVSYEMQRNLSLEHAKTSVLLLNKVDLLWDDLFLILQF 251
Cdd:COG4886 320 LTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTTAG 399
|
..
gi 2462599095 252 VW 253
Cdd:COG4886 400 VL 401
|
|
| LRRCT |
smart00082 |
Leucine rich repeat C-terminal domain; |
508-560 |
2.28e-05 |
|
Leucine rich repeat C-terminal domain;
:
Pssm-ID: 214507 [Multi-domain] Cd Length: 51 Bit Score: 42.42 E-value: 2.28e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 2462599095 508 NPFRCTCELKNFIQLETYSEvmMVGWSDSYTCEYPLNLRGtRLKDVHLHELSC 560
Cdd:smart00082 1 NPFICDCELRWLLRWLQANE--HLQDPVDLRCASPSSLRG-PLLELLHSEFKC 50
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TIR |
smart00255 |
Toll - interleukin 1 - resistance; |
619-761 |
3.70e-33 |
|
Toll - interleukin 1 - resistance;
Pssm-ID: 214587 [Multi-domain] Cd Length: 140 Bit Score: 124.36 E-value: 3.70e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 619 RFHAFISYSEHDslWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVFSPNFVQNEWCHYEFYF 698
Cdd:smart00255 1 EYDVFISYSGKE--DVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVA 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462599095 699 AHHNLFHENSDHIILILLEPIPFYcIPTRYHKLKALLeKKAYLEWPKDRRKcgLFWANLRAAI 761
Cdd:smart00255 79 ALENALEEGGLRVIPIFYEVIPSD-VRKQPGKFRKVF-KKNYLKWPEDEKE--QFWKKALYAV 137
|
|
| TIR |
pfam01582 |
TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular ... |
620-754 |
9.45e-18 |
|
TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades.
Pssm-ID: 396246 [Multi-domain] Cd Length: 165 Bit Score: 81.26 E-value: 9.45e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 620 FHAFISYSEHDSL-WVKNELIPNLEKEdgSILICLYESYFDPGKSISENIVSFIEKSYKSIFVFSPNFVQNEWCHYEFYF 698
Cdd:pfam01582 1 YDVFLSFRGSDTReWFVSHLLKELKQK--GIKLFIDDRDLEPGEAIAPELLSAIEKSRRSVVVLSPNYASSGWCLDELVK 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462599095 699 AHHNLFhENSDHIILILLEPIPFYC------IPTRYHKLKALLEKKAYLEWPKDRRKCGLFW 754
Cdd:pfam01582 79 ILECAL-DLGQKVIPIFYEVDPSDVrkqtgsFGKAFKKHKKVLTEEKVLKWRGALNEVANIW 139
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
334-510 |
2.43e-14 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 75.74 E-value: 2.43e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 334 TKFQYLNFANNILTDeLFKRTLQLPHLKTLILNGNKLETLSlvSCFANNTPLEHLDLSQNLLQHKNDENCSWPEtVVNMN 413
Cdd:COG4886 113 TNLESLDLSGNQLTD-LPEELANLTNLKELDLSNNQLTDLP--EPLGNLTNLKSLDLSNNQLTDLPEELGNLTN-LKELD 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 414 LSYNKLSDsvfrcLPKSI------QILDLNNNQIQTVPKETIHLMALRELNIAFNFLTDLPGCSHFSRLSVLNIEMNFIl 487
Cdd:COG4886 189 LSNNQITD-----LPEPLgnltnlEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLTDLPELGNLTNLEELDLSNNQL- 262
|
170 180
....*....|....*....|...
gi 2462599095 488 sPSLDFVQSCQEVKTLNAGRNPF 510
Cdd:COG4886 263 -TDLPPLANLTNLKTLDLSNNQL 284
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
58-115 |
3.44e-10 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 56.38 E-value: 3.44e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462599095 58 SKLRVLILCHNRIQQLDLKTFEFNKELRYLDLSNNRLKSV---TWYLLAGLRYLDLSFNDF 115
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLspgAFSGLPSLRYLDLSGNRL 61
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
19-253 |
7.41e-09 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 58.79 E-value: 7.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 19 NCSNMSLRKVPADLTPAT--TTLDLSYNLLFQLqSSDFHSVSKLRVLILCHNRIQQLDlKTFEFNKELRYLDLSNNRLKS 96
Cdd:COG4886 165 DLSNNQLTDLPEELGNLTnlKELDLSNNQITDL-PEPLGNLTNLEELDLSGNQLTDLP-EPLANLTNLETLDLSNNQLTD 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 97 VTW-YLLAGLRYLDLSFNDFDTMPiceEAGNMSHLEILGLSGAKIQKSDFQKISHLHLNTVFLGFRTLPHYEE----GSL 171
Cdd:COG4886 243 LPElGNLTNLEELDLSNNQLTDLP---PLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLEllilLLL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 172 PILNTTKLHIVLPMDTNFWVLLRDGIKTSKILEMTNIDGKSQFVSYEMQRNLSLEHAKTSVLLLNKVDLLWDDLFLILQF 251
Cdd:COG4886 320 LTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTTAG 399
|
..
gi 2462599095 252 VW 253
Cdd:COG4886 400 VL 401
|
|
| PRK15370 |
PRK15370 |
type III secretion system effector E3 ubiquitin transferase SlrP; |
299-468 |
2.56e-07 |
|
type III secretion system effector E3 ubiquitin transferase SlrP;
Pssm-ID: 185268 [Multi-domain] Cd Length: 754 Bit Score: 54.32 E-value: 2.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 299 YIQQDKIYLLLTKTDI----ENL-----TIS-NAQMPHMLFPNYPTKFQYLNFANNILTdELFKRtlqLPH-LKTLILNG 367
Cdd:PRK15370 196 CIPEQITTLILDNNELkslpENLqgnikTLYaNSNQLTSIPATLPDTIQEMELSINRIT-ELPER---LPSaLQSLDLFH 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 368 NKL--------ETLSLVSCFANN--TPLEHLDLSQNLLQHKNDENCSWPETVvNMNLSYNKLSDSVFRCLPKSI----QI 433
Cdd:PRK15370 272 NKIsclpenlpEELRYLSVYDNSirTLPAHLPSGITHLNVQSNSLTALPETL-PPGLKTLEAGENALTSLPASLppelQV 350
|
170 180 190
....*....|....*....|....*....|....*
gi 2462599095 434 LDLNNNQIQTVPkETIHlMALRELNIAFNFLTDLP 468
Cdd:PRK15370 351 LDVSKNQITVLP-ETLP-PTITTLDVSRNALTNLP 383
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
37-141 |
1.26e-06 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 51.47 E-value: 1.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 37 TTLDLSYNLLFQlqssdfhSVSKLRVLILCHNRIQQLDlKTFEFNKELRYLDLSNNRLKSVTWYL--LAGLRYLDLSFND 114
Cdd:COG4886 99 TELDLSGNEELS-------NLTNLESLDLSGNQLTDLP-EELANLTNLKELDLSNNQLTDLPEPLgnLTNLKSLDLSNNQ 170
|
90 100
....*....|....*....|....*..
gi 2462599095 115 FDTMPicEEAGNMSHLEILGLSGAKIQ 141
Cdd:COG4886 171 LTDLP--EELGNLTNLKELDLSNNQIT 195
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
334-441 |
5.06e-06 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 49.28 E-value: 5.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 334 TKFQYLNFANNILTDELFKRTLQ----LPHLKTLILNGNKLETL---SLVSCFANNTPLEHLDLSQNLL-----QHKNDE 401
Cdd:cd00116 165 RDLKELNLANNGIGDAGIRALAEglkaNCNLEVLDLNNNGLTDEgasALAETLASLKSLEVLNLGDNNLtdagaAALASA 244
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 2462599095 402 NCSWPETVVNMNLSYNKLSDSVFRCLP------KSIQILDLNNNQI 441
Cdd:cd00116 245 LLSPNISLLTLSLSCNDITDDGAKDLAevlaekESLLELDLRGNKF 290
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
358-441 |
7.74e-06 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 44.05 E-value: 7.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 358 PHLKTLILNGNKLETLSlVSCFANNTPLEHLDLSQNLLQHkndencswpetvvnmnlsynkLSDSVFRCLPkSIQILDLN 437
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLD-DGAFKGLSNLKVLDLSNNLLTT---------------------LSPGAFSGLP-SLRYLDLS 57
|
....
gi 2462599095 438 NNQI 441
Cdd:pfam13855 58 GNRL 61
|
|
| LRRCT |
smart00082 |
Leucine rich repeat C-terminal domain; |
508-560 |
2.28e-05 |
|
Leucine rich repeat C-terminal domain;
Pssm-ID: 214507 [Multi-domain] Cd Length: 51 Bit Score: 42.42 E-value: 2.28e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 2462599095 508 NPFRCTCELKNFIQLETYSEvmMVGWSDSYTCEYPLNLRGtRLKDVHLHELSC 560
Cdd:smart00082 1 NPFICDCELRWLLRWLQANE--HLQDPVDLRCASPSSLRG-PLLELLHSEFKC 50
|
|
| PRK15370 |
PRK15370 |
type III secretion system effector E3 ubiquitin transferase SlrP; |
10-119 |
9.45e-05 |
|
type III secretion system effector E3 ubiquitin transferase SlrP;
Pssm-ID: 185268 [Multi-domain] Cd Length: 754 Bit Score: 45.84 E-value: 9.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 10 LPEE-----RELMTNCSNMSlrKVPADLTPATTTLDLSYNLLFQLQSsdfHSVSKLRVLILCHNRIQQLDLKTFEfnkEL 84
Cdd:PRK15370 214 LPENlqgniKTLYANSNQLT--SIPATLPDTIQEMELSINRITELPE---RLPSALQSLDLFHNKISCLPENLPE---EL 285
|
90 100 110
....*....|....*....|....*....|....*
gi 2462599095 85 RYLDLSNNRLKSVTWYLLAGLRYLDLSFNDFDTMP 119
Cdd:PRK15370 286 RYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALP 320
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
37-137 |
1.24e-04 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 44.01 E-value: 1.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 37 TTLDLSYNLLFQLQssDFHSVSKLRVLILCHNRI-------------------QQLDLK-TFEFN--------KELRYLD 88
Cdd:cd21340 49 THLYLQNNQIEKIE--NLENLVNLKKLYLGGNRIsvveglenltnleelhienQRLPPGeKLTFDprslaalsNSLRVLN 126
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 2462599095 89 LSNNRLKSVTW-YLLAGLRYLDLSFNDFDTM-PICEEAGNMSHLEILGLSG 137
Cdd:cd21340 127 ISGNNIDSLEPlAPLRNLEQLDASNNQISDLeELLDLLSSWPSLRELDLTG 177
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
19-441 |
9.80e-03 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 39.45 E-value: 9.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 19 NCSNMSLR-KVPADLTPATTTLDLSYNLLFQLQSSDFHSVSKLRVLILCHN-----------RIQQLDLKTFEFNKELRY 86
Cdd:PLN00113 124 NLSNNNFTgSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNvlvgkipnsltNLTSLEFLTLASNQLVGQ 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 87 LDLSNNRLKSVTW-YL---------------LAGLRYLDLSFNDFdTMPICEEAGNMSHLEILGLSGAK----IQKSDF- 145
Cdd:PLN00113 204 IPRELGQMKSLKWiYLgynnlsgeipyeiggLTSLNHLDLVYNNL-TGPIPSSLGNLKNLQYLFLYQNKlsgpIPPSIFs 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 146 -QKISHLHLNTVFLgfrtlphyeEGSLP--ILNTTKLHIVLPMDTNFWVLLRDGIKTSKILEMTNIdgKSQFVSYEMQRN 222
Cdd:PLN00113 283 lQKLISLDLSDNSL---------SGEIPelVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL--WSNKFSGEIPKN 351
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 223 LSlEHAKTSVLLLNKVDL-------LWD--DLFLILQFVWH------------TSVEHFQIRNVTFGGKA---------- 271
Cdd:PLN00113 352 LG-KHNNLTVLDLSTNNLtgeipegLCSsgNLFKLILFSNSlegeipkslgacRSLRRVRLQDNSFSGELpseftklplv 430
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 272 -YLDHNSFDYSNTImRTIKLEHVHFRVFYIQQDKIYLLLTKT----DIENLTISNAQMPHML---FPNYPTKFQyLNFAN 343
Cdd:PLN00113 431 yFLDISNNNLQGRI-NSRKWDMPSLQMLSLARNKFFGGLPDSfgskRLENLDLSRNQFSGAVprkLGSLSELMQ-LKLSE 508
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 344 NILTDELFKRTLQLPHLKTLILNGNKLeTLSLVSCFANNTPLEHLDLSQNLLQHKNDENCSWPETVVNMNLSYNKLSDSv 423
Cdd:PLN00113 509 NKLSGEIPDELSSCKKLVSLDLSHNQL-SGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGS- 586
|
490
....*....|....*...
gi 2462599095 424 frcLPKSIQILDLNNNQI 441
Cdd:PLN00113 587 ---LPSTGAFLAINASAV 601
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TIR |
smart00255 |
Toll - interleukin 1 - resistance; |
619-761 |
3.70e-33 |
|
Toll - interleukin 1 - resistance;
Pssm-ID: 214587 [Multi-domain] Cd Length: 140 Bit Score: 124.36 E-value: 3.70e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 619 RFHAFISYSEHDslWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVFSPNFVQNEWCHYEFYF 698
Cdd:smart00255 1 EYDVFISYSGKE--DVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVA 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462599095 699 AHHNLFHENSDHIILILLEPIPFYcIPTRYHKLKALLeKKAYLEWPKDRRKcgLFWANLRAAI 761
Cdd:smart00255 79 ALENALEEGGLRVIPIFYEVIPSD-VRKQPGKFRKVF-KKNYLKWPEDEKE--QFWKKALYAV 137
|
|
| TIR |
pfam01582 |
TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular ... |
620-754 |
9.45e-18 |
|
TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades.
Pssm-ID: 396246 [Multi-domain] Cd Length: 165 Bit Score: 81.26 E-value: 9.45e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 620 FHAFISYSEHDSL-WVKNELIPNLEKEdgSILICLYESYFDPGKSISENIVSFIEKSYKSIFVFSPNFVQNEWCHYEFYF 698
Cdd:pfam01582 1 YDVFLSFRGSDTReWFVSHLLKELKQK--GIKLFIDDRDLEPGEAIAPELLSAIEKSRRSVVVLSPNYASSGWCLDELVK 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462599095 699 AHHNLFhENSDHIILILLEPIPFYC------IPTRYHKLKALLEKKAYLEWPKDRRKCGLFW 754
Cdd:pfam01582 79 ILECAL-DLGQKVIPIFYEVDPSDVrkqtgsFGKAFKKHKKVLTEEKVLKWRGALNEVANIW 139
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
334-510 |
2.43e-14 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 75.74 E-value: 2.43e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 334 TKFQYLNFANNILTDeLFKRTLQLPHLKTLILNGNKLETLSlvSCFANNTPLEHLDLSQNLLQHKNDENCSWPEtVVNMN 413
Cdd:COG4886 113 TNLESLDLSGNQLTD-LPEELANLTNLKELDLSNNQLTDLP--EPLGNLTNLKSLDLSNNQLTDLPEELGNLTN-LKELD 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 414 LSYNKLSDsvfrcLPKSI------QILDLNNNQIQTVPKETIHLMALRELNIAFNFLTDLPGCSHFSRLSVLNIEMNFIl 487
Cdd:COG4886 189 LSNNQITD-----LPEPLgnltnlEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLTDLPELGNLTNLEELDLSNNQL- 262
|
170 180
....*....|....*....|...
gi 2462599095 488 sPSLDFVQSCQEVKTLNAGRNPF 510
Cdd:COG4886 263 -TDLPPLANLTNLKTLDLSNNQL 284
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
312-527 |
3.27e-13 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 72.27 E-value: 3.27e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 312 TDIENLTISNAQ---MPHMLFPNypTKFQYLNFANNILTDeLFKRTLQLPHLKTLILNGNKLETLSLVscFANNTPLEHL 388
Cdd:COG4886 113 TNLESLDLSGNQltdLPEELANL--TNLKELDLSNNQLTD-LPEPLGNLTNLKSLDLSNNQLTDLPEE--LGNLTNLKEL 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 389 DLSQNLLQhkndencSWPETVVNM------NLSYNKLSDsvfrcLPKSI------QILDLNNNQIQTVPkETIHLMALRE 456
Cdd:COG4886 188 DLSNNQIT-------DLPEPLGNLtnleelDLSGNQLTD-----LPEPLanltnlETLDLSNNQLTDLP-ELGNLTNLEE 254
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462599095 457 LNIAFNFLTDLPGCSHFSRLSVLNIEMNFILSPSLDFVQSCQEVKTLNAGRNPFRCTCELKNFIQLETYSE 527
Cdd:COG4886 255 LDLSNNQLTDLPPLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLL 325
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
58-115 |
3.44e-10 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 56.38 E-value: 3.44e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462599095 58 SKLRVLILCHNRIQQLDLKTFEFNKELRYLDLSNNRLKSV---TWYLLAGLRYLDLSFNDF 115
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLspgAFSGLPSLRYLDLSGNRL 61
|
|
| TIR_2 |
pfam13676 |
TIR domain; This is a family of Toll-like receptors. |
623-718 |
1.47e-09 |
|
TIR domain; This is a family of Toll-like receptors.
Pssm-ID: 463954 [Multi-domain] Cd Length: 118 Bit Score: 56.17 E-value: 1.47e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 623 FISYSEHDSLWVKnELIPNLEKEDgsiliclYESYFD-----PGKSISENIVSFIEKSYKSIFVFSPNFVQNEWCHYEFY 697
Cdd:pfam13676 2 FISYAGEDRAWAE-WLADALEAAG-------YRVWLDrwdirPGDDWVEEIEEAIENSDRVLVVLSPNYLESPWCRAEWE 73
|
90 100
....*....|....*....|.
gi 2462599095 698 FAHHnlFHENSDHIILILLEP 718
Cdd:pfam13676 74 AALA--DPEGRKRLIPVRLEC 92
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
19-253 |
7.41e-09 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 58.79 E-value: 7.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 19 NCSNMSLRKVPADLTPAT--TTLDLSYNLLFQLqSSDFHSVSKLRVLILCHNRIQQLDlKTFEFNKELRYLDLSNNRLKS 96
Cdd:COG4886 165 DLSNNQLTDLPEELGNLTnlKELDLSNNQITDL-PEPLGNLTNLEELDLSGNQLTDLP-EPLANLTNLETLDLSNNQLTD 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 97 VTW-YLLAGLRYLDLSFNDFDTMPiceEAGNMSHLEILGLSGAKIQKSDFQKISHLHLNTVFLGFRTLPHYEE----GSL 171
Cdd:COG4886 243 LPElGNLTNLEELDLSNNQLTDLP---PLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLEllilLLL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 172 PILNTTKLHIVLPMDTNFWVLLRDGIKTSKILEMTNIDGKSQFVSYEMQRNLSLEHAKTSVLLLNKVDLLWDDLFLILQF 251
Cdd:COG4886 320 LTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTTAG 399
|
..
gi 2462599095 252 VW 253
Cdd:COG4886 400 VL 401
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
37-94 |
1.17e-08 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 51.76 E-value: 1.17e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 2462599095 37 TTLDLSYNLLFQLQSSDFHSVSKLRVLILCHNRIQQLDLKTFEFNKELRYLDLSNNRL 94
Cdd:pfam13855 4 RSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| PRK15370 |
PRK15370 |
type III secretion system effector E3 ubiquitin transferase SlrP; |
299-468 |
2.56e-07 |
|
type III secretion system effector E3 ubiquitin transferase SlrP;
Pssm-ID: 185268 [Multi-domain] Cd Length: 754 Bit Score: 54.32 E-value: 2.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 299 YIQQDKIYLLLTKTDI----ENL-----TIS-NAQMPHMLFPNYPTKFQYLNFANNILTdELFKRtlqLPH-LKTLILNG 367
Cdd:PRK15370 196 CIPEQITTLILDNNELkslpENLqgnikTLYaNSNQLTSIPATLPDTIQEMELSINRIT-ELPER---LPSaLQSLDLFH 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 368 NKL--------ETLSLVSCFANN--TPLEHLDLSQNLLQHKNDENCSWPETVvNMNLSYNKLSDSVFRCLPKSI----QI 433
Cdd:PRK15370 272 NKIsclpenlpEELRYLSVYDNSirTLPAHLPSGITHLNVQSNSLTALPETL-PPGLKTLEAGENALTSLPASLppelQV 350
|
170 180 190
....*....|....*....|....*....|....*
gi 2462599095 434 LDLNNNQIQTVPkETIHlMALRELNIAFNFLTDLP 468
Cdd:PRK15370 351 LDVSKNQITVLP-ETLP-PTITTLDVSRNALTNLP 383
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
37-141 |
1.26e-06 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 51.47 E-value: 1.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 37 TTLDLSYNLLFQlqssdfhSVSKLRVLILCHNRIQQLDlKTFEFNKELRYLDLSNNRLKSVTWYL--LAGLRYLDLSFND 114
Cdd:COG4886 99 TELDLSGNEELS-------NLTNLESLDLSGNQLTDLP-EELANLTNLKELDLSNNQLTDLPEPLgnLTNLKSLDLSNNQ 170
|
90 100
....*....|....*....|....*..
gi 2462599095 115 FDTMPicEEAGNMSHLEILGLSGAKIQ 141
Cdd:COG4886 171 LTDLP--EELGNLTNLKELDLSNNQIT 195
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
334-441 |
5.06e-06 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 49.28 E-value: 5.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 334 TKFQYLNFANNILTDELFKRTLQ----LPHLKTLILNGNKLETL---SLVSCFANNTPLEHLDLSQNLL-----QHKNDE 401
Cdd:cd00116 165 RDLKELNLANNGIGDAGIRALAEglkaNCNLEVLDLNNNGLTDEgasALAETLASLKSLEVLNLGDNNLtdagaAALASA 244
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 2462599095 402 NCSWPETVVNMNLSYNKLSDSVFRCLP------KSIQILDLNNNQI 441
Cdd:cd00116 245 LLSPNISLLTLSLSCNDITDDGAKDLAevlaekESLLELDLRGNKF 290
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
358-441 |
7.74e-06 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 44.05 E-value: 7.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 358 PHLKTLILNGNKLETLSlVSCFANNTPLEHLDLSQNLLQHkndencswpetvvnmnlsynkLSDSVFRCLPkSIQILDLN 437
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLD-DGAFKGLSNLKVLDLSNNLLTT---------------------LSPGAFSGLP-SLRYLDLS 57
|
....
gi 2462599095 438 NNQI 441
Cdd:pfam13855 58 GNRL 61
|
|
| LRRCT |
smart00082 |
Leucine rich repeat C-terminal domain; |
508-560 |
2.28e-05 |
|
Leucine rich repeat C-terminal domain;
Pssm-ID: 214507 [Multi-domain] Cd Length: 51 Bit Score: 42.42 E-value: 2.28e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 2462599095 508 NPFRCTCELKNFIQLETYSEvmMVGWSDSYTCEYPLNLRGtRLKDVHLHELSC 560
Cdd:smart00082 1 NPFICDCELRWLLRWLQANE--HLQDPVDLRCASPSSLRG-PLLELLHSEFKC 50
|
|
| PRK15370 |
PRK15370 |
type III secretion system effector E3 ubiquitin transferase SlrP; |
10-119 |
9.45e-05 |
|
type III secretion system effector E3 ubiquitin transferase SlrP;
Pssm-ID: 185268 [Multi-domain] Cd Length: 754 Bit Score: 45.84 E-value: 9.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 10 LPEE-----RELMTNCSNMSlrKVPADLTPATTTLDLSYNLLFQLQSsdfHSVSKLRVLILCHNRIQQLDLKTFEfnkEL 84
Cdd:PRK15370 214 LPENlqgniKTLYANSNQLT--SIPATLPDTIQEMELSINRITELPE---RLPSALQSLDLFHNKISCLPENLPE---EL 285
|
90 100 110
....*....|....*....|....*....|....*
gi 2462599095 85 RYLDLSNNRLKSVTWYLLAGLRYLDLSFNDFDTMP 119
Cdd:PRK15370 286 RYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALP 320
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
37-137 |
1.24e-04 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 44.01 E-value: 1.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 37 TTLDLSYNLLFQLQssDFHSVSKLRVLILCHNRI-------------------QQLDLK-TFEFN--------KELRYLD 88
Cdd:cd21340 49 THLYLQNNQIEKIE--NLENLVNLKKLYLGGNRIsvveglenltnleelhienQRLPPGeKLTFDprslaalsNSLRVLN 126
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 2462599095 89 LSNNRLKSVTW-YLLAGLRYLDLSFNDFDTM-PICEEAGNMSHLEILGLSG 137
Cdd:cd21340 127 ISGNNIDSLEPlAPLRNLEQLDASNNQISDLeELLDLLSSWPSLRELDLTG 177
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
334-487 |
1.09e-03 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 42.53 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 334 TKFQYLNF---ANNILTDELFKRTLQLPHLKTLILNGNK-------------LETLSLV---------SCFANNTPLEHL 388
Cdd:PLN00113 425 TKLPLVYFldiSNNNLQGRINSRKWDMPSLQMLSLARNKffgglpdsfgskrLENLDLSrnqfsgavpRKLGSLSELMQL 504
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 389 DLSQNLLQHKNDENCSWPETVVNMNLSYNKLSDSV---FRCLPkSIQILDLNNNQIQ-TVPKETIHLMALRELNIAFNFL 464
Cdd:PLN00113 505 KLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIpasFSEMP-VLSQLDLSQNQLSgEIPKNLGNVESLVQVNISHNHL 583
|
170 180
....*....|....*....|....
gi 2462599095 465 -TDLPGCSHFSRLSVLNIEMNFIL 487
Cdd:PLN00113 584 hGSLPSTGAFLAINASAVAGNIDL 607
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
337-395 |
2.14e-03 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 37.12 E-value: 2.14e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462599095 337 QYLNFANNILT---DELFKRtlqLPHLKTLILNGNKLETLSLVScFANNTPLEHLDLSQNLL 395
Cdd:pfam13855 4 RSLDLSNNRLTsldDGAFKG---LSNLKVLDLSNNLLTTLSPGA-FSGLPSLRYLDLSGNRL 61
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
334-503 |
7.38e-03 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 39.26 E-value: 7.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 334 TKFQYLNFANNILTDEL---FKRTLQLPHLKTLILNGNKLETLSL-VSCFA---NNTPLEHLDLSQNLLQHKNDEncSWP 406
Cdd:cd00116 81 CGLQELDLSDNALGPDGcgvLESLLRSSSLQELKLNNNGLGDRGLrLLAKGlkdLPPALEKLVLGRNRLEGASCE--ALA 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 407 E------TVVNMNLSYNKLSDSVFRCL------PKSIQILDLNNNQIQtvPKETI-------HLMALRELNIAFNFLTDL 467
Cdd:cd00116 159 KalranrDLKELNLANNGIGDAGIRALaeglkaNCNLEVLDLNNNGLT--DEGASalaetlaSLKSLEVLNLGDNNLTDA 236
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2462599095 468 PGC-------SHFSRLSVLNIEMNFI-LSPSLDFVQSCQEVKTL 503
Cdd:cd00116 237 GAAalasallSPNISLLTLSLSCNDItDDGAKDLAEVLAEKESL 280
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
45-121 |
9.28e-03 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 38.23 E-value: 9.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 45 LLFQLQSSDFHSVSkLRVLILCHNRIQqlDLKTFEFNKELRYLDLSNNRLKS---VTWYL--LAGLRYLDLSFNdfdtmP 119
Cdd:cd21340 108 LTFDPRSLAALSNS-LRVLNISGNNID--SLEPLAPLRNLEQLDASNNQISDleeLLDLLssWPSLRELDLTGN-----P 179
|
..
gi 2462599095 120 IC 121
Cdd:cd21340 180 VC 181
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
19-441 |
9.80e-03 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 39.45 E-value: 9.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 19 NCSNMSLR-KVPADLTPATTTLDLSYNLLFQLQSSDFHSVSKLRVLILCHN-----------RIQQLDLKTFEFNKELRY 86
Cdd:PLN00113 124 NLSNNNFTgSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNvlvgkipnsltNLTSLEFLTLASNQLVGQ 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 87 LDLSNNRLKSVTW-YL---------------LAGLRYLDLSFNDFdTMPICEEAGNMSHLEILGLSGAK----IQKSDF- 145
Cdd:PLN00113 204 IPRELGQMKSLKWiYLgynnlsgeipyeiggLTSLNHLDLVYNNL-TGPIPSSLGNLKNLQYLFLYQNKlsgpIPPSIFs 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 146 -QKISHLHLNTVFLgfrtlphyeEGSLP--ILNTTKLHIVLPMDTNFWVLLRDGIKTSKILEMTNIdgKSQFVSYEMQRN 222
Cdd:PLN00113 283 lQKLISLDLSDNSL---------SGEIPelVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL--WSNKFSGEIPKN 351
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 223 LSlEHAKTSVLLLNKVDL-------LWD--DLFLILQFVWH------------TSVEHFQIRNVTFGGKA---------- 271
Cdd:PLN00113 352 LG-KHNNLTVLDLSTNNLtgeipegLCSsgNLFKLILFSNSlegeipkslgacRSLRRVRLQDNSFSGELpseftklplv 430
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 272 -YLDHNSFDYSNTImRTIKLEHVHFRVFYIQQDKIYLLLTKT----DIENLTISNAQMPHML---FPNYPTKFQyLNFAN 343
Cdd:PLN00113 431 yFLDISNNNLQGRI-NSRKWDMPSLQMLSLARNKFFGGLPDSfgskRLENLDLSRNQFSGAVprkLGSLSELMQ-LKLSE 508
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462599095 344 NILTDELFKRTLQLPHLKTLILNGNKLeTLSLVSCFANNTPLEHLDLSQNLLQHKNDENCSWPETVVNMNLSYNKLSDSv 423
Cdd:PLN00113 509 NKLSGEIPDELSSCKKLVSLDLSHNQL-SGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGS- 586
|
490
....*....|....*...
gi 2462599095 424 frcLPKSIQILDLNNNQI 441
Cdd:PLN00113 587 ---LPSTGAFLAINASAV 601
|
|
| |
