|
Name |
Accession |
Description |
Interval |
E-value |
| CEP63 |
pfam17045 |
Centrosomal protein of 63 kDa; CEP63 is a family of eukaryotic proteins involved in centriole ... |
27-289 |
6.50e-101 |
|
Centrosomal protein of 63 kDa; CEP63 is a family of eukaryotic proteins involved in centriole activity.
Pssm-ID: 465338 [Multi-domain] Cd Length: 264 Bit Score: 310.21 E-value: 6.50e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 27 LTSCEAELQELMKQIDIMVAHKKSEWEGRTHALETCLKIREQELKSLRSQLDVTHKEVGMLHQQVEEHEKIKQEMTMEYK 106
Cdd:pfam17045 1 LSSCEAELQELMKQIDIMVAHKKSEWEGQTRALETRLDIREEELLSARNTLERKHKEIGLLRQQLEELEKGKQELVAKYE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 107 QELKKLHEELCILKRSYEKLQKKQMREFRGNTKNHREDRSEIERLTAKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKAL 186
Cdd:pfam17045 81 QQLQKLQEELSKLKRSYEKLQRKQLKEAREEAKSREEDRSELSRLNGKLEEFRQKSLEWEQQRLQYQQQVASLEAQRKAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 187 AEQSEIIQA-----QLVNRKQKLEsvelSSQSEIQHLSSKLERANDTICANELEIERLTMRVNDLVGTSMTVLQEQQQKE 261
Cdd:pfam17045 161 AEQSSLIQSaayqvQLEGRKQCLE----ASQSEIQRLRSKLERAQDSLCAQELELERLRMRVSELGDSNRKLLEEQQRLL 236
|
250 260
....*....|....*....|....*...
gi 2462592816 262 EKLRESEKLLEALQEEKRELKAALQSQE 289
Cdd:pfam17045 237 EELRMSQRQLQVLQNELMELKATLQSQD 264
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
66-410 |
3.16e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.55 E-value: 3.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 66 REQELKSLRSQLDVTHKEVGMLHQQVEEHEKIKQEMTMEYKQELKKLHE---ELCILKRSYEKLQKKQMREFRGNTKNHR 142
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEElsrQISALRKDLARLEAEVEQLEERIAQLSK 754
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 143 ED---RSEIERLTAKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLVNRK---QKLESVELSSQSEIQ 216
Cdd:TIGR02168 755 ELtelEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNeeaANLRERLESLERRIA 834
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 217 HLSSKLERANDTICANELEIERLTMRVNDLvGTSMTVLQEQQQKEEKLRES-EKLLEALQEEKRELKAALQSQENLIHEA 295
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAEIEEL-EELIEELESELEALLNERASlEEALALLRSELEELSEELRELESKRSEL 913
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 296 RIQKEKLQEKVKATNTQhaVEAIRPREESLAEkKYTSQGQGDLDSVLSQLNFTHTSEDLLQAEVTCLEGSLESVSAtckq 375
Cdd:TIGR02168 914 RRELEELREKLAQLELR--LEGLEVRIDNLQE-RLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGP---- 986
|
330 340 350
....*....|....*....|....*....|....*
gi 2462592816 376 LSQELMEKYEELKRMEAHNNEYKAEIKKLKEQILQ 410
Cdd:TIGR02168 987 VNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEE 1021
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
32-376 |
9.81e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 72.02 E-value: 9.81e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 32 AELQELMKQIDIMVAHKKSEWEG----RTHAL---ETCLKIREQELKSLRSQLDVTHKEVGMLHQQVEEHEKIKQEMTME 104
Cdd:TIGR02169 180 EEVEENIERLDLIIDEKRQQLERlrreREKAEryqALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 105 YKQELKKLHEELCILKRSYEKLQKKQMREFRGNTKNHREDRSEIERLTAKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRK 184
Cdd:TIGR02169 260 ISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIE 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 185 ALAEQSEIIQ---AQLVNRKQKLESVELSSQSEIQHLSSKLERANDTICANELEIERLTMRVNDLVGTSMTVLQEQQQKE 261
Cdd:TIGR02169 340 ELEREIEEERkrrDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLS 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 262 EKLRESEKLLEALQEEKRELKAALQSQENLIHEARIQKEKLQEKVKATNTQHaveaIRPREESLAEKKYTSQGQGDLDSV 341
Cdd:TIGR02169 420 EELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQEL----YDLKEEYDRVEKELSKLQRELAEA 495
|
330 340 350
....*....|....*....|....*....|....*
gi 2462592816 342 LSQLNFTHTSEDLLQAEVTCLEGSLESVSATCKQL 376
Cdd:TIGR02169 496 EAQARASEERVRGGRAVEEVLKASIQGVHGTVAQL 530
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
145-483 |
5.28e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.23 E-value: 5.28e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 145 RSEIERLTAKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLVNRKQKLESVElssqSEIQHLSSKLER 224
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE----AEVEQLEERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 225 ANDTICANELEIERLTMRVNDLVGTSMTVLQEQQQKEEKLRESEKLLEALQEEKRELKAALQSQENLIHEARIQKEKLQE 304
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLER 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 305 KVKATNTQhaveaIRPREESLAEkkytsqgqgdldsvlsqlnfthtsedlLQAEVTCLEGSLESVSATCKQLSQELMEKY 384
Cdd:TIGR02168 832 RIAATERR-----LEDLEEQIEE---------------------------LSEDIESLAAEIEELEELIEELESELEALL 879
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 385 EELKRMEAHNNEYKAEIKKLKEQILQGEQSYSSALEgmkmEISHLTQELHQRDITIASTKGSSSDMEKRLRAEMQKAEDK 464
Cdd:TIGR02168 880 NERASLEEALALLRSELEELSEELRELESKRSELRR----ELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEE 955
|
330
....*....|....*....
gi 2462592816 465 AVEHKEILDqLESLKLENR 483
Cdd:TIGR02168 956 AEALENKIE-DDEEEARRR 973
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
46-369 |
8.11e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 8.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 46 AHKKSEWEGRTHALETCLKIREQELKSLRSQLDVTHKEVGMLHQQVEEHEKIKQEMTMEYKQELKKLHEELCILKRSYEK 125
Cdd:TIGR02168 224 ELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQ 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 126 LQKKQMREfrgntknhREDRSEIERLTAKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLVNRKQKLE 205
Cdd:TIGR02168 304 KQILRERL--------ANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLE 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 206 SVE---LSSQSEIQHLSSKLERANDTICANELEIERLTMRVNDLVGTSMTVLQEQQQKE-----EKLRESEKLLEALQEE 277
Cdd:TIGR02168 376 ELEeqlETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAElkelqAELEELEEELEELQEE 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 278 KRELKAALQSQENLIHEARIQKEKLQEKVK-ATNTQHAVEAIRPREESLAE-----KKYTSQGQGDLDSVLSQLNFThts 351
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQALDAAERELAqLQARLDSLERLQENLEGFSEgvkalLKNQSGLSGILGVLSELISVD--- 532
|
330
....*....|....*...
gi 2462592816 352 EDLLQAEVTCLEGSLESV 369
Cdd:TIGR02168 533 EGYEAAIEAALGGRLQAV 550
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
95-413 |
9.28e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.39 E-value: 9.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 95 EKIKQEMTMEYKQELKKLHEELCILKRSYEKLQKKQMREFRGNTKNHREDRSEIERLTAKIEEFRQKSLDWEKQRLIYQQ 174
Cdd:TIGR02169 672 EPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 175 QVSSLEAQRKALAEQSEIIQAQLVNRKQKLESVELS-SQSEIQHLSSKLERANDTICANELEIERLTMRVNDLvgtsmtv 253
Cdd:TIGR02169 752 EIENVKSELKELEARIEELEEDLHKLEEALNDLEARlSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRL------- 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 254 LQEQQQKEEKLRESEKLLEALQEEKRELKAAlqsqenlIHEARIQKEKLQEKVKatNTQHAVEAIRPREESLaekkytsq 333
Cdd:TIGR02169 825 TLEKEYLEKEIQELQEQRIDLKEQIKSIEKE-------IENLNGKKEELEEELE--ELEAALRDLESRLGDL-------- 887
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 334 gQGDLDSVLSQLNFTHTSEDLLQAEVTCLEGSLESVSATCKQLSQELMEkYEELKRMEAHNNEYKAEIKKLKEQILQGEQ 413
Cdd:TIGR02169 888 -KKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSE-IEDPKGEDEEIPEEELSLEDVQAELQRVEE 965
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
12-389 |
1.28e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.62 E-value: 1.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 12 GGFVRRntkSRAWGFLTSCEAELQELmkqidimvAHKKSEWEGRTHALETCLKIREQELKSLRSQLDVTHKEVGMLHQQV 91
Cdd:TIGR02169 657 GGSRAP---RGGILFSRSEPAELQRL--------RERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEI 725
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 92 E----EHEKIKQEMTmEYKQELKKLHEELCILKRSYEKLqkkqmrefrgntknhredRSEIERLTAKIEEFRQKSLDWEk 167
Cdd:TIGR02169 726 EqleqEEEKLKERLE-ELEEDLSSLEQEIENVKSELKEL------------------EARIEELEEDLHKLEEALNDLE- 785
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 168 qRLIYQQQVSSLEAQRKALAEQSEIIQAQLVNRKQKLESVELSSQ---SEIQHLSSKLERANDTICANELEIERLTMRVN 244
Cdd:TIGR02169 786 -ARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEyleKEIQELQEQRIDLKEQIKSIEKEIENLNGKKE 864
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 245 DLvgtsmtvLQEQQQKEEKLRESEKLLEALQEEKRELKAALQSQENLIHEARIQKEKLQEKVKATNTQHAV--EAIRPRE 322
Cdd:TIGR02169 865 EL-------EEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEAleEELSEIE 937
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 323 ESLAEKKYTSQGQGDLDSV-------------LSQLNFTHTSE-DLLQAEVTCLEGSLESVSATCKQLsQELMEKYEELK 388
Cdd:TIGR02169 938 DPKGEDEEIPEEELSLEDVqaelqrveeeiraLEPVNMLAIQEyEEVLKRLDELKEKRAKLEEERKAI-LERIEEYEKKK 1016
|
.
gi 2462592816 389 R 389
Cdd:TIGR02169 1017 R 1017
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
67-371 |
1.19e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 1.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 67 EQELKSLRSQLDVTHKevgmlHQQVEEHEKIKQemTMEYKQELKKLHEELCILKRSYEKLQKK---QMREFRGNTKNHRE 143
Cdd:COG1196 199 ERQLEPLERQAEKAER-----YRELKEELKELE--AELLLLKLRELEAELEELEAELEELEAEleeLEAELAELEAELEE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 144 DRSEIERLTAKIEEFRQKSL-------DWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLVNRKQKLESVELSSQS--- 213
Cdd:COG1196 272 LRLELEELELELEEAQAEEYellaelaRLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEaee 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 214 ---EIQHLSSKLERANDTICANELEIERLTMRVNDLVGTSMTVLQEQQQKEEKLRESEKLLEALQEEKRELKAALQSQEN 290
Cdd:COG1196 352 eleEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALA 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 291 LIHEARIQKEKLQEKVKATNTQHAVEAIRPREESLAEKKYTSQGQGDLDSVLSQLNFTHTSEDLLQAEVTCLEGSLESVS 370
Cdd:COG1196 432 ELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVK 511
|
.
gi 2462592816 371 A 371
Cdd:COG1196 512 A 512
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
87-526 |
1.70e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 58.13 E-value: 1.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 87 LHQQVEEHE-KIKQEMTMEYKQELKKLHEELcilkRSYEKlQKKQMREFRGNTK----NHREDRSEIERLTAKIEEFRQK 161
Cdd:PRK02224 192 LKAQIEEKEeKDLHERLNGLESELAELDEEI----ERYEE-QREQARETRDEADevleEHEERREELETLEAEIEDLRET 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 162 SLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQ----------LVNRKQKLESVELSSQSEIQHLSSKLERANDTICA 231
Cdd:PRK02224 267 IAETEREREELAEEVRDLRERLEELEEERDDLLAEaglddadaeaVEARREELEDRDEELRDRLEECRVAAQAHNEEAES 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 232 NELEIERLTMRVNDLVGTSMTVLQEQQQKEEKLRESEKLLEALQEEKRELKAA-------LQSQENLIHEARIQKEKLQE 304
Cdd:PRK02224 347 LREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERfgdapvdLGNAEDFLEELREERDELRE 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 305 KVKATNT--QHAVEAIRPREESLAEKKYTSQGQGdldsvlsqlnfthtsedllqaevtcLEGSlESVSAtckqlsqeLME 382
Cdd:PRK02224 427 REAELEAtlRTARERVEEAEALLEAGKCPECGQP-------------------------VEGS-PHVET--------IEE 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 383 KYEELKRMEAHNNEYKAEIKKLKEQILQGEQSYSSA--LEGMKMEISHLTQELHQRDITIASTKGSSSDMEKR---LRAE 457
Cdd:PRK02224 473 DRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEdrIERLEERREDLEELIAERRETIEEKRERAEELRERaaeLEAE 552
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 458 MQKAEDKAVE-HKEILDQLESLKLENRHLSEMVMKLElglHEAKEISLADLQENYIEALNKLVSENQQLQ 526
Cdd:PRK02224 553 AEEKREAAAEaEEEAEEAREEVAELNSKLAELKERIE---SLERIRTLLAAIADAEDEIERLREKREALA 619
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
237-537 |
3.97e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.87 E-value: 3.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 237 ERLTmRVNDL---VGTSMTVLQEQQQKEEKLREseklleaLQEEKRELKAALQSQEnlIHEARIQKEKLQEKVKATNTQH 313
Cdd:COG1196 186 ENLE-RLEDIlgeLERQLEPLERQAEKAERYRE-------LKEELKELEAELLLLK--LRELEAELEELEAELEELEAEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 314 AVEAirpREESLAEKKYTSQGQgDLDSVLSQLNFTHTSEDLLQAEVTCLEGSLESVSATCKQLSQELMEKYEELKRMEAH 393
Cdd:COG1196 256 EELE---AELAELEAELEELRL-ELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEE 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 394 NNEYKAEIKKLKEQILQGEQsyssALEGMKMEISHLTQELHQRDITIASTKGSSSDMEKRLRAEMQKAEDKAVEHKEILD 473
Cdd:COG1196 332 LEELEEELEELEEELEEAEE----ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEE 407
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462592816 474 QLESLKLENRHLSEMVMKLELGL--HEAKEISLADLQENYIEALNKLVSENQQLQKDLMNTKSQLE 537
Cdd:COG1196 408 AEEALLERLERLEEELEELEEALaeLEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA 473
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
168-491 |
1.31e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 55.23 E-value: 1.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 168 QRLIYQQQVSSLEAQRKALAEQSEIIQAQLvNRKQKLESVELSSQSEIQHLSSKLERANDTICANELEIERLTMRVNDL- 246
Cdd:pfam12128 588 KRIDVPEWAASEEELRERLDKAEEALQSAR-EKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEk 666
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 247 VGTSMTVLQEQQQKEEKLRESEKLLEALqeeKRELKAALQSQENLIHEARIQK-EKLQEKVKATNTQHA--VEAIRPREE 323
Cdd:pfam12128 667 DKKNKALAERKDSANERLNSLEAQLKQL---DKKHQAWLEEQKEQKREARTEKqAYWQVVEGALDAQLAllKAAIAARRS 743
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 324 SLaeKKYTSQGQGDLDSVLSQLNFTHTSEDLLQAEVTCLEGSLESvsatCKQLSQELMEKYEELK-RMEAHNNEYKAEIK 402
Cdd:pfam12128 744 GA--KAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIER----IAVRRQEVLRYFDWYQeTWLQRRPRLATQLS 817
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 403 KLKEQILQGEQSYSSALEGMKMEISHLTQELHQRDITIASTKGSSSDMEKRLR-----AEMQKAEDKAVEHKEILDQLES 477
Cdd:pfam12128 818 NIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSklatlKEDANSEQAQGSIGERLAQLED 897
|
330
....*....|....
gi 2462592816 478 LKLENRHLSEMVMK 491
Cdd:pfam12128 898 LKLKRDYLSESVKK 911
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
48-521 |
1.44e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.07 E-value: 1.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 48 KKSEWEGRTHALETCLKIREQELKSLRSQLDVTHKEVGMLHQQVEEHEKIKQEMT------MEYKQELKKLHEELCILKR 121
Cdd:PRK03918 187 RTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEelekelESLEGSKRKLEEKIRELEE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 122 SYEKLQK--KQMREFRGNTKNHREDRSEIERLTAKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEiiqaqlvn 199
Cdd:PRK03918 267 RIEELKKeiEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEE-------- 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 200 RKQKLESVELSSQSEIQHLSSKlERANDTICANELEIERLTMRVNDLvgtsmtvlqEQQQKEEKLRESEKLLEALQEEKR 279
Cdd:PRK03918 339 RLEELKKKLKELEKRLEELEER-HELYEEAKAKKEELERLKKRLTGL---------TPEKLEKELEELEKAKEEIEEEIS 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 280 ELKAALQSQENLIHEARIQKEKLQEK------VKATNTQHAVEAIRPR-----EESLAEKKYTSQGQGDLDSVLSQLNFT 348
Cdd:PRK03918 409 KITARIGELKKEIKELKKAIEELKKAkgkcpvCGRELTEEHRKELLEEytaelKRIEKELKEIEEKERKLRKELRELEKV 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 349 HTSEDLLQAEVTCLEGSLESVSATCKQLSQELMEKYEELKRMEAHNNEYKAEIKKLKEQiLQGEQSYSSALEGMKMEISH 428
Cdd:PRK03918 489 LKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKE-LEKLEELKKKLAELEKKLDE 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 429 LTQELHQRdITIASTKGSSS--DMEKRLRaEMQKAEDKAVE----HKEILDQLESLKLENRHLSEMVMKLELGLHEAKEI 502
Cdd:PRK03918 568 LEEELAEL-LKELEELGFESveELEERLK-ELEPFYNEYLElkdaEKELEREEKELKKLEEELDKAFEELAETEKRLEEL 645
|
490
....*....|....*....
gi 2462592816 503 sladlqENYIEALNKLVSE 521
Cdd:PRK03918 646 ------RKELEELEKKYSE 658
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
51-549 |
2.28e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 54.35 E-value: 2.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 51 EWEGRTHaLETCLKIREQELKSLRSQLDVTH----KEVGMLHQQVEEHEKIKQEMTME-----------------YKQEL 109
Cdd:pfam15921 69 AYPGKEH-IERVLEEYSHQVKDLQRRLNESNelheKQKFYLRQSVIDLQTKLQEMQMErdamadirrresqsqedLRNQL 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 110 KKLHEEL---CILKRSYEKLQKKQMREFRGNTKNHREDRSEIERLTAKIEEFRQKSLDWEKQ--RLIYQQQVSSLEAQRK 184
Cdd:pfam15921 148 QNTVHELeaaKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSmsTMHFRSLGSAISKILR 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 185 ALAEQSEIIQAQLVNRKQKLESVELSSQSEIQHL-SSKLERANDTICANELEIERLTMRVN------DLVGTSMTVLQEQ 257
Cdd:pfam15921 228 ELDTEISYLKGRIFPVEDQLEALKSESQNKIELLlQQHQDRIEQLISEHEVEITGLTEKASsarsqaNSIQSQLEIIQEQ 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 258 --QQKEEKLRESEKLLEALQEEKRELKAALQSQENLIheariqkEKLQEKVKATNTQHAveairpreESLAEKKYTSQGQ 335
Cdd:pfam15921 308 arNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKI-------EELEKQLVLANSELT--------EARTERDQFSQES 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 336 GDLDSVLSQL-NFTHTSEDLLQAEVTC---LEGSLESVSATCKQLSQELMEKYEELKRMEAHNNEYKAEIKKLKEQILQG 411
Cdd:pfam15921 373 GNLDDQLQKLlADLHKREKELSLEKEQnkrLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAA 452
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 412 EQ----------SYSSALEGMKMEISHLTQELHQRDITIASTKGSSSDMEKRLRAEMQKAEDKAVEHKEI-------LDQ 474
Cdd:pfam15921 453 IQgkneslekvsSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLrsrvdlkLQE 532
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462592816 475 LESLKLENRHLSEMVMKLE-LGLHEAKEISLADLQENYIEALNKLVSENQQLQKDLMNTKSQLEistqmcKKQNDR 549
Cdd:pfam15921 533 LQHLKNEGDHLRNVQTECEaLKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLE------KEINDR 602
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
119-537 |
3.86e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 53.62 E-value: 3.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 119 LKRSYEKLQKKQMREFRGNTKNHREDRSEIERLTAKIEEFRQKsldwEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLV 198
Cdd:COG4717 51 LEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAEL----QEELEELEEELEELEAELEELREELEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 199 NRKQKLESVELssQSEIQHLSSKLERAndticanELEIERLTMRVNDLVGTSMTVLQEQQQKEEKLR----ESEKLLEAL 274
Cdd:COG4717 127 LLPLYQELEAL--EAELAELPERLEEL-------EERLEELRELEEELEELEAELAELQEELEELLEqlslATEEELQDL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 275 QEEKRELKAALQSQENLIHEARIQKEKLQEKVKATNTQHAVEAIrprEESLAEKKYTSQGQGDLDSVLSQLNFTHTSEDL 354
Cdd:COG4717 198 AEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAAL---EERLKEARLLLLIAAALLALLGLGGSLLSLILT 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 355 LQAEVTCLEGSLESVSATCKQLSQELMEKYEELKRMEAHNNEYKAEIKKLKEQI-LQGEQSYSSALEGMKmEISHLTQEL 433
Cdd:COG4717 275 IAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALgLPPDLSPEELLELLD-RIEELQELL 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 434 HQRDITIASTKGSSSDMEKRLRAEMQKAEDKA--VEHKEILDQLESLKLENRHLSEMVMKLELGLHEAKEISLADLQENY 511
Cdd:COG4717 354 REAEELEEELQLEELEQEIAALLAEAGVEDEEelRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEE 433
|
410 420 430
....*....|....*....|....*....|
gi 2462592816 512 IEALNKLVSENQ----QLQKDLMNTKSQLE 537
Cdd:COG4717 434 LEELEEELEELEeeleELREELAELEAELE 463
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
32-446 |
7.85e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.81 E-value: 7.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 32 AELQELMKQIDIMVAHKKSEWEGRTHALETCLKIREQELKSLRSQLDVTHKEVGMLHQQVEEhekikqemtmeYKQELKK 111
Cdd:pfam15921 320 SDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQK-----------LLADLHK 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 112 LHEELCILKRSYEKLQKKQMrefrGNT------KNHREDRS-EIERLTAKIEEFRQKSLDWEKQRLIYQQ-------QVS 177
Cdd:pfam15921 389 REKELSLEKEQNKRLWDRDT----GNSitidhlRRELDDRNmEVQRLEALLKAMKSECQGQMERQMAAIQgknesleKVS 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 178 SLEAQRKALAEQSEIIQAQLVNRKQKLESvelsSQSEIQHLSSKLERANDTICANELEIERLTMRVNdlvgtsmTVLQEQ 257
Cdd:pfam15921 465 SLTAQLESTKEMLRKVVEELTAKKMTLES----SERTVSDLTASLQEKERAIEATNAEITKLRSRVD-------LKLQEL 533
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 258 QQkeekLRESEKLLEALQEEKRELKAALQSQENLIHEARIQKEKLQEKVKatntQHAveaiRPREESLAEKKYTSQGQGD 337
Cdd:pfam15921 534 QH----LKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVG----QHG----RTAGAMQVEKAQLEKEIND 601
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 338 LDSVLSQLNFTHTSEDL----LQAEVTCLEgsLESVS---------ATCKQLSQELMEKYEELKRMEAHNNEYKAEIKKL 404
Cdd:pfam15921 602 RRLELQEFKILKDKKDAkireLEARVSDLE--LEKVKlvnagserlRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVL 679
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 2462592816 405 KEQILQGEQSYSSALEGMKMEISHLTQELHQRDITIASTKGS 446
Cdd:pfam15921 680 KRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGS 721
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
173-401 |
8.14e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.61 E-value: 8.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 173 QQQVSSLEAQRKALAEQSEIIQAQLVNRKQKLESVElssqsEIQHLSSKLERANDTicanELEIERLTMRvndlvgtsmt 252
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQ-----ERREALQRLAEYSWD----EIDVASAERE---------- 669
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 253 vLQEQQQKEEKLRESEKLLEALQEEKRELKAALQSQENLIHEARIQKEKLQEKVKATNTQhaVEAIRPREESlAEKKYTS 332
Cdd:COG4913 670 -IAELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEE--LDELQDRLEA-AEDLARL 745
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462592816 333 QGQGDLDSVLSQLNFTHTSEDLLQAevtcLEGSLESVSATCKQLSQELMEKyeelkrMEAHNNEYKAEI 401
Cdd:COG4913 746 ELRALLEERFAAALGDAVERELREN----LEERIDALRARLNRAEEELERA------MRAFNREWPAET 804
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
104-332 |
9.26e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.69 E-value: 9.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 104 EYKQELKKLHEELCILKRSYEKLQKKQmrefrgntknhREDRSEIERLTAKIEEFRQKSLDWEKQRLIYQQQVSSLEAQR 183
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEE-----------KALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 184 KALAEQSEIIQAQLVNRKQKLESVE-------LSSQSEIQHLSSKLERANDTICANELEIERLTMRVNDLVgtsmtvlQE 256
Cdd:COG4942 93 AELRAELEAQKEELAELLRALYRLGrqpplalLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELA-------AL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 257 QQQKEEKLRESEKLLEALQEEKRELKAALQSQENLIHEARIQKEKLQEKVK-----ATNTQHAVEAIRPREESLAEKKYT 331
Cdd:COG4942 166 RAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAelqqeAEELEALIARLEAEAAAAAERTPA 245
|
.
gi 2462592816 332 S 332
Cdd:COG4942 246 A 246
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
145-305 |
1.53e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 51.56 E-value: 1.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 145 RSEIERLTAKIEEFRQKS--LDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLVNRKQKLESV-----ELSSQSEIQH 217
Cdd:COG3206 188 RKELEEAEAALEEFRQKNglVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGpdalpELLQSPVIQQ 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 218 LSSKLERAndticanELEIERLTMRVNDLvGTSMTVLQEQQQ--KEEKLRESEKLLEALQEEKRELKAALQSQENLIHEA 295
Cdd:COG3206 268 LRAQLAEL-------EAELAELSARYTPN-HPDVIALRAQIAalRAQLQQEAQRILASLEAELEALQAREASLQAQLAQL 339
|
170
....*....|
gi 2462592816 296 RIQKEKLQEK 305
Cdd:COG3206 340 EARLAELPEL 349
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
255-542 |
3.54e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.71 E-value: 3.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 255 QEQQQKEEKLRESEKLLEALQEEKRELKAALQSQENLIHEARIQKEKLQEKVKATNTQhaVEAIRPREESLAEKKytsqg 334
Cdd:COG1196 239 AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE--LARLEQDIARLEERR----- 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 335 qgdldsvlsqlnfthtsEDLLQAEVTcLEGSLESVSATCKQLSQELMEKYEELKRMEAHNNEYKAEIKKLKEQILQGEQS 414
Cdd:COG1196 312 -----------------RELEERLEE-LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 415 YSSALEgmkmEISHLTQELHQRDITIASTKGSSSDMEKRLRAEMQKAEDKAVEHKEILDQLESL--KLENRHLSEMVMKL 492
Cdd:COG1196 374 LAEAEE----ELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELeeEEEEEEEALEEAAE 449
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 2462592816 493 ELGLHEAKEISLADLQENYIEALNKLVSENQQLQKDLMNTKSQLEISTQM 542
Cdd:COG1196 450 EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEA 499
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
142-317 |
3.80e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 3.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 142 REDRSEIERLTAKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLVNRKQKLESVelssQSEIQHLSSK 221
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL----EKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 222 LERANDTI---------------------CANELEIERLTMRVNDLVGTSMTVLQEQQQKEEKLRESEKLLEALQEEKRE 280
Cdd:COG4942 99 LEAQKEELaellralyrlgrqpplalllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190
....*....|....*....|....*....|....*..
gi 2462592816 281 LKAALQSQENLIHEARIQKEKLQEKVKATNTQHAVEA 317
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAEL 215
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
279-537 |
3.85e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 3.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 279 RELKAALQSQENLIHEARIQKEKLQEKvkATNTQHAVEAIRPREESLAEKkyTSQGQGDLDSVLSQLNFTHTSEDLLQAE 358
Cdd:TIGR02168 666 AKTNSSILERRREIEELEEKIEELEEK--IAELEKALAELRKELEELEEE--LEQLRKELEELSRQISALRKDLARLEAE 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 359 VTCLEGSLESVSATCKQLSQELMEKYEELKRMEAHNNEYKAEIKKLKEQILQgeqsYSSALEGMKMEISHLTQELHQRDI 438
Cdd:TIGR02168 742 VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQ----LKEELKALREALDELRAELTLLNE 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 439 TIASTKGSSSDMEKRLRAEMQKAEDKAVEHKEILDQLESLKLENRHLSEMVMKLELGLHEAKEI---------SLADLQE 509
Cdd:TIGR02168 818 EAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNErasleealaLLRSELE 897
|
250 260
....*....|....*....|....*...
gi 2462592816 510 NYIEALNKLVSENQQLQKDLMNTKSQLE 537
Cdd:TIGR02168 898 ELSEELRELESKRSELRRELEELREKLA 925
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
166-494 |
5.02e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.06 E-value: 5.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 166 EKQRLIYQQQVSSLEAQRKALAEQseiiqaqlvnrKQKLESVELSSQSEIQHLSSKLERANDTICANELEIERLTMRVND 245
Cdd:TIGR02168 224 ELELALLVLRLEELREELEELQEE-----------LKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 246 LVGTSMTVLQEQQQKEEKLRESEKLLEALQEEKRELKAALQSQENLIHEARIQKEKLQEKVKATNTQHaveairprEESL 325
Cdd:TIGR02168 293 LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL--------EELE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 326 AEKKYTSQGQGDLDSVLSQLNfthtsedllqAEVTCLEGSLESVSAtckqlsqelmekyeELKRMEAHNNEYKAEIKKLK 405
Cdd:TIGR02168 365 AELEELESRLEELEEQLETLR----------SKVAQLELQIASLNN--------------EIERLEARLERLEDRRERLQ 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 406 EQILQGEQSYSSA-LEGMKMEISHLTQELHQ---RDITIASTKGSSSDMEKRLRAEMQKAEDKAVEHKEILDQLESLKLE 481
Cdd:TIGR02168 421 QEIEELLKKLEEAeLKELQAELEELEEELEElqeELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQEN 500
|
330
....*....|...
gi 2462592816 482 NRHLSEMVMKLEL 494
Cdd:TIGR02168 501 LEGFSEGVKALLK 513
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
220-550 |
5.05e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.07 E-value: 5.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 220 SKLERANDTICANELEIERLTmrvndlvgtsmTVLQEQQQKEEKLR-ESEKLLE--ALQEEKRELKAALQSQENLIHEAR 296
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLD-----------LIIDEKRQQLERLRrEREKAERyqALLKEKREYEGYELLKEKEALERQ 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 297 IQKEKLQEKVKATNTQHAVEAIRPREESLAEKkytsqgQGDLDSVLSQLNFTHTSEDL-LQAEVTCLEGSLESVSATCKQ 375
Cdd:TIGR02169 239 KEAIERQLASLEEELEKLTEEISELEKRLEEI------EQLLEELNKKIKDLGEEEQLrVKEKIGELEAEIASLERSIAE 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 376 LSQELMEKYEELKRMEAHNNEYKAEIKKLKEQI--LQGEQ-SYSSALEGMKMEISHLTQELHQRDITIASTKGSSSDMEK 452
Cdd:TIGR02169 313 KERELEDAEERLAKLEAEIDKLLAEIEELEREIeeERKRRdKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 453 RLraemqkaEDKAVEHKEILDQLESLKLENRHLSEMV--MKLELGLHEAKEISLADLQENYIEALNKLVSENQQLQKDLM 530
Cdd:TIGR02169 393 KL-------EKLKREINELKRELDRLQEELQRLSEELadLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLS 465
|
330 340
....*....|....*....|
gi 2462592816 531 NTKSQLEISTQMCKKQNDRI 550
Cdd:TIGR02169 466 KYEQELYDLKEEYDRVEKEL 485
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
63-407 |
1.41e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.52 E-value: 1.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 63 LKIREQELKSLRSQLDVTHKEVGMLHQQVEEHEKIKQEMTMEYKQELKKLHEELcilkrsyEKLQKKQMREFRGNTKNHR 142
Cdd:PRK03918 343 LKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEEL-------EKAKEEIEEEISKITARIG 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 143 EDRSEIERLTAKIEEFRQKSL----------DWEKQRLI--YQQQVSSLEAQRKALAEQSEIIQAQLVNRKQKLE----- 205
Cdd:PRK03918 416 ELKKEIKELKKAIEELKKAKGkcpvcgreltEEHRKELLeeYTAELKRIEKELKEIEEKERKLRKELRELEKVLKkesel 495
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 206 SVELSSQSEIQHLSSKLERAN-DTICANELEIERLTMRVNDLVGTSMTVLQEQQQKEE---KLRESEKLLEALQEEKREL 281
Cdd:PRK03918 496 IKLKELAEQLKELEEKLKKYNlEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEElkkKLAELEKKLDELEEELAEL 575
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 282 KAAL-----QSQENLIHEARIQKEKLQEKVKATNTQHAVEAIRPREESLAEK-----KYTSQGQGDLDSVLSQLNfthts 351
Cdd:PRK03918 576 LKELeelgfESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEEldkafEELAETEKRLEELRKELE----- 650
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462592816 352 edllQAEVTCLEGSLESVSATCKQLSQELMEKYEELKRMEAHNNEYKAEIKKLKEQ 407
Cdd:PRK03918 651 ----ELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEE 702
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
66-310 |
2.43e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 2.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 66 REQELKSLRSQLDVTHKEVGMLHQQVEEHEKikqemtmeykqELKKLHEELCILKRSYEKLQKKQmrefrgntknhREDR 145
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLK-----------QLAALERRIAALARRIRALEQEL-----------AALE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 146 SEIERLTAKIEEFRQKSLDWEKQ--RLIYQQQVSSLEAQRKALAEQSEIiqAQLVNRKQKLESVELSSQSEIQHLSSKLE 223
Cdd:COG4942 83 AELAELEKEIAELRAELEAQKEElaELLRALYRLGRQPPLALLLSPEDF--LDAVRRLQYLKYLAPARREQAEELRADLA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 224 RANDTICANELEIERLTMRVNDLVGTSMTVLQEQQQKEEKLRESEKLLEALQEEKRELKAALQSQENLIHEARIQKEKLQ 303
Cdd:COG4942 161 ELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
....*..
gi 2462592816 304 EKVKATN 310
Cdd:COG4942 241 ERTPAAG 247
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
82-537 |
2.49e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.66 E-value: 2.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 82 KEVGMLHQQVEEHEKIKQEMTMEYKQElKKLHEELCILKRSYEKLQKKQMREFRGNTKNHREDRSEIERLTAKIEEFRQk 161
Cdd:TIGR00618 163 KEKKELLMNLFPLDQYTQLALMEFAKK-KSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQ- 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 162 SLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLVNRKQKLESVELSSQSE--------IQHLSSKLERANDTICANE 233
Cdd:TIGR00618 241 SHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAplaahikaVTQIEQQAQRIHTELQSKM 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 234 LEIERLTMRVNDLVGTSMTVLQEQQQKEEKLRESEKLLEALQEEK--RELKAALQSQENLIHEARIQKEKLQEKVKA--- 308
Cdd:TIGR00618 321 RSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATsiREISCQQHTLTQHIHTLQQQKTTLTQKLQSlck 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 309 -----TNTQHAVEAIRPREESLAEKKYTSQGQGDLDSVLSQLNFTHTSEDL--LQAEVTCLEGSLESVSATCKQLS--QE 379
Cdd:TIGR00618 401 eldilQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAqcEKLEKIHLQESAQSLKEREQQLQtkEQ 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 380 LMEKYEELKRMEAHN-NEYKAEIKKLKEQILQGEQSYSSALE----------GMKMEISHLTQELHQRDITIASTKGSSS 448
Cdd:TIGR00618 481 IHLQETRKKAVVLARlLELQEEPCPLCGSCIHPNPARQDIDNpgpltrrmqrGEQTYAQLETSEEDVYHQLTSERKQRAS 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 449 DMEK--RLRAEMQKAEDKAVEHKEILDQLESLKLENRHLSEMVMKLELGLHEAKEISLADLQENyiEALNKLVSENQQLQ 526
Cdd:TIGR00618 561 LKEQmqEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPE--QDLQDVRLHLQQCS 638
|
490
....*....|.
gi 2462592816 527 KDLMNTKSQLE 537
Cdd:TIGR00618 639 QELALKLTALH 649
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
140-328 |
2.70e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.70 E-value: 2.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 140 NHREDRSEIERLTAKIEEFRQKSLDWEKQRLIYQQQ--VSSLEAQRKALAEQSEIIQAQLVNRKQKLESVelssQSEIQH 217
Cdd:COG3206 169 RREEARKALEFLEEQLPELRKELEEAEAALEEFRQKngLVDLSEEAKLLLQQLSELESQLAEARAELAEA----EARLAA 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 218 LSSKLERANDTICA--NELEIERLTMRVNDLVgtsmtvlQEQQQKEEKLRESEKLLEALQEEKRELKAALQSQ-ENLIHE 294
Cdd:COG3206 245 LRAQLGSGPDALPEllQSPVIQQLRAQLAELE-------AELAELSARYTPNHPDVIALRAQIAALRAQLQQEaQRILAS 317
|
170 180 190
....*....|....*....|....*....|....
gi 2462592816 295 ARIQKEKLQEKVKATNTQhaVEAIRPREESLAEK 328
Cdd:COG3206 318 LEAELEALQAREASLQAQ--LAQLEARLAELPEL 349
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
90-480 |
5.01e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.89 E-value: 5.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 90 QVEEHEKIKQEMTMEYKQELKKLHEELCILKRSYEKLQKKQMREFRGNTKNHREDRSEIERLTAKIEEFRQKSLDWEKQR 169
Cdd:pfam02463 180 EETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 170 liyQQQVSSLEAQRKALAEQSEIIQAQLVNRKQKLESVELSSQSEIQHLSSKLERANDTICANELEIERLTMRVNDLVGT 249
Cdd:pfam02463 260 ---IEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEE 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 250 SmtvLQEQQQKEEKLRESEKLLEALQEEKRELKAALQSQENLIHEARIQKEKLQEKVKATNTQHAVEAIRPREESLAEKK 329
Cdd:pfam02463 337 I---EELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLEL 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 330 ytsqgqgdLDSVLSQLNFTHTSEDLLQAEVTCLEGSLESVSATCKQLSQELMEKYEELKRMEAHNNEYKAEIKKLKEQIL 409
Cdd:pfam02463 414 --------ARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQ 485
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462592816 410 QGEQSYSSALEGMKMEISHLTQELHQRDITIASTKGSSSDMEKRLRAEMQKAEDKAVEHKEILDQLESLKL 480
Cdd:pfam02463 486 LELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSAT 556
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
67-462 |
5.06e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 5.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 67 EQELKSLRSQLDVTHKEVGMLHQQVEEHEKIKQemTMEYKQELKKLHEELCILKRSYEKLqKKQMREFRGNTKNHREDRS 146
Cdd:COG4717 94 QEELEELEEELEELEAELEELREELEKLEKLLQ--LLPLYQELEALEAELAELPERLEEL-EERLEELRELEEELEELEA 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 147 EIERLTAKIEE-FRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLVNRKQKLEsvELSSQSEIQHLSSKLERA 225
Cdd:COG4717 171 ELAELQEELEElLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELE--QLENELEAAALEERLKEA 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 226 N------DTICANELEIERLTMRVNDLVGTSMTVLQEQQQKEEKLRESEKLLEALQEEKRELkAALQSQENLIHEARIQK 299
Cdd:COG4717 249 RlllliaAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQAL-PALEELEEEELEELLAA 327
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 300 EKLQEKVKATNTQHAVEAIRPREESLAEKKytsqgqgDLDSVLSQLNFTHTSEDLLQAevtCLEGSLESVSATCKQLS-- 377
Cdd:COG4717 328 LGLPPDLSPEELLELLDRIEELQELLREAE-------ELEEELQLEELEQEIAALLAE---AGVEDEEELRAALEQAEey 397
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 378 QELMEKYEELK-RMEAHNNEYKAEIKKLKEQILQGE-QSYSSALEGMKMEISHLTQELHQRDITIASTKGSSSDMEKRLR 455
Cdd:COG4717 398 QELKEELEELEeQLEELLGELEELLEALDEEELEEElEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQE 477
|
....*..
gi 2462592816 456 AEMQKAE 462
Cdd:COG4717 478 LEELKAE 484
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
107-298 |
5.82e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 5.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 107 QELKKLHEELCILKRSYEKLQkkQMREFRGNTKNHREDRSEIERLTAKIE-EFRQKSLDWEKQRLI-YQQQVSSLEAQRK 184
Cdd:COG4913 235 DDLERAHEALEDAREQIELLE--PIRELAERYAAARERLAELEYLRAALRlWFAQRRLELLEAELEeLRAELARLEAELE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 185 ALAEQSEIIQAQLVNRKQKLESVELSS----QSEIQHLSSKLERANDTICANELEIERLTMRVND-----------LVGT 249
Cdd:COG4913 313 RLEARLDALREELDELEAQIRGNGGDRleqlEREIERLERELEERERRRARLEALLAALGLPLPAsaeefaalraeAAAL 392
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2462592816 250 SMTVLQEQQQKEEKLRESEKLLEALQEEKRELK---AALQSQENLIHEARIQ 298
Cdd:COG4913 393 LEALEEELEALEEALAEAEAALRDLRRELRELEaeiASLERRKSNIPARLLA 444
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
47-534 |
7.23e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.17 E-value: 7.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 47 HKKSEWEGRTHALETCLKIREQELKSLRSQLDVTHKEVGMLHQQVEEHEKIKQEMTmEYKQELKKLHEELCILKRSYEKL 126
Cdd:TIGR04523 159 NKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNK-SLESQISELKKQNNQLKDNIEKK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 127 QKKQmrefrgntknhREDRSEIERLTAKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLVN-RKQKLE 205
Cdd:TIGR04523 238 QQEI-----------NEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDlNNQKEQ 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 206 SVELSSQSEIQHLSSKLERANDTICANELEIERLTMRVNDLVGTSMTVLQEQQQKEEKLRESEKLLEALQEEKRELKAAL 285
Cdd:TIGR04523 307 DWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEI 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 286 QSQENLIH--EARIQKEK-----LQEKVKATNTQHAV---EAIRPREESLAEKKYTSQGQGDLDSVLSQLNFTHTSEDLL 355
Cdd:TIGR04523 387 KNLESQINdlESKIQNQEklnqqKDEQIKKLQQEKELlekEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESL 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 356 QAEVTCLEGSLESVSATCKQLSQELMEKYEELKRMEAHNNEYKAEIKKLKEQI---LQGEQSYSSALEGMKMEISHLTQE 432
Cdd:TIGR04523 467 ETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKIsslKEKIEKLESEKKEKESKISDLEDE 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 433 LHQRDITIASTKGSSSDMEK-----RLRAEMQKAEDKAVEHKEILDQLESLKLENRHLSEMVMKL------ELGLHEAKE 501
Cdd:TIGR04523 547 LNKDDFELKKENLEKEIDEKnkeieELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKisslekELEKAKKEN 626
|
490 500 510
....*....|....*....|....*....|...
gi 2462592816 502 ISLADLQENYIEALNKLVSENQQLQKDLMNTKS 534
Cdd:TIGR04523 627 EKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRN 659
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
27-464 |
9.75e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.81 E-value: 9.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 27 LTSCEAELQELMKQIDIMVahkkseweGRTHALETCLKIREQELKSLRSQLDVTHKEVGMLHQQVEEHEKIKQEMTMEYK 106
Cdd:TIGR00606 711 LKSTESELKKKEKRRDEML--------GLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEE 782
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 107 QE---------LKKLHEELCILKRSYEKLQKKQ-----MREFRGNTKNHREDRSEIERLTAKIEEFRQKSLDWEKQRLIY 172
Cdd:TIGR00606 783 SAkvcltdvtiMERFQMELKDVERKIAQQAAKLqgsdlDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 173 QQQVSSLEAQRKALAEQSEiiqaqlvnRKQKLESVELSSQSEIQHLSSKLERANDTICANELEIERLTMRVNDLVgtsmt 252
Cdd:TIGR00606 863 KSKTNELKSEKLQIGTNLQ--------RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELI----- 929
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 253 vlqeqQQKEEKLRESEKLLEALQEEKRELKAALQSQENLIHEARiQKEKLQEKVKATNTQHAVEAIRPREESLAEkkyts 332
Cdd:TIGR00606 930 -----SSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGK-DDYLKQKETELNTVNAQLEECEKHQEKINE----- 998
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 333 qgqgDLDSVLSQLNFTHTSEDLLQAEVTclegsLESVSATCKQLSQELMEKYEELKRMEAhnNEYKAEIKKLKEQILQGE 412
Cdd:TIGR00606 999 ----DMRLMRQDIDTQKIQERWLQDNLT-----LRKRENELKEVEEELKQHLKEMGQMQV--LQMKQEHQKLEENIDLIK 1067
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 2462592816 413 QSYSSALEGMK---MEISHLTQELHQRDITIASTKGSSSDMEKRLRAEMQKAEDK 464
Cdd:TIGR00606 1068 RNHVLALGRQKgyeKEIKHFKKELREPQFRDAEEKYREMMIVMRTTELVNKDLDI 1122
|
|
| CusB_dom_1 |
pfam00529 |
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli ... |
172-331 |
1.38e-04 |
|
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli can be divided into four different domains, the first three domains of the protein are mostly beta-strands and the fourth forms an all alpha-helical domain. This entry represents the first beta-domain (domain 1) of CusB and it is formed by the N and C-terminal ends of the polypeptide (residues 89-102 and 324-385). CusB is part of the copper-transporting efflux system CusCFBA. This domain can also be found in other membrane-fusion proteins, such as HlyD, MdtN, MdtE and AaeA. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.
Pssm-ID: 425733 [Multi-domain] Cd Length: 322 Bit Score: 44.72 E-value: 1.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 172 YQQQVSSLEAQRKALAEQSEIIQAQlVNRKQKLESVELSSQSEIQHLSSKLERANDTICANELEIERLTMRVNDlvgtsM 251
Cdd:pfam00529 56 YQAALDSAEAQLAKAQAQVARLQAE-LDRLQALESELAISRQDYDGATAQLRAAQAAVKAAQAQLAQAQIDLAR-----R 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 252 TVLQEQQ-QKEEKLRESEKLLEALQEEKRELKAALQSQENLIHEARIQKEKLQEKVKATNTQHAVEAIRPREESLAEKKY 330
Cdd:pfam00529 130 RVLAPIGgISRESLVTAGALVAQAQANLLATVAQLDQIYVQITQSAAENQAEVRSELSGAQLQIAEAEAELKLAKLDLER 209
|
.
gi 2462592816 331 T 331
Cdd:pfam00529 210 T 210
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
33-467 |
1.55e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.21 E-value: 1.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 33 ELQELMKQIDIMVAHKKSEWEGRTHALETCLKIREQELKSLRSQLDVTHKEVGMLHQQVEEHEKIKQEMTMEYKQELKKL 112
Cdd:pfam12128 280 ERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENL 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 113 HEELCILKRSYEKLQKKQMREFRGNTKNHREDRSEIERLTAKIEEFRQKSLdwEKQRLIYQQQVSSL----EAQRKALAE 188
Cdd:pfam12128 360 EERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQL--AVAEDDLQALESELreqlEAGKLEFNE 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 189 QSEIIQAQLVNRKQKLESVELS---------SQSEIQHLSSKLERANDTICANELEIERLTMR---VNDLVGTSMTVLQE 256
Cdd:pfam12128 438 EEYRLKSRLGELKLRLNQATATpelllqlenFDERIERAREEQEAANAEVERLQSELRQARKRrdqASEALRQASRRLEE 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 257 QQQKEEKLRE-----SEKLLEALQEEK---RELKAALQSQEnLIHEARIQKEKLQEKVKATNTQHAV------------- 315
Cdd:pfam12128 518 RQSALDELELqlfpqAGTLLHFLRKEApdwEQSIGKVISPE-LLHRTDLDPEVWDGSVGGELNLYGVkldlkridvpewa 596
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 316 ---EAIRpREESLAEKKYTSQG--QGDLDSVLSQLNfthTSEDLLQAEVTCLEGSLESVSATCKQLS----QELMEKYEE 386
Cdd:pfam12128 597 aseEELR-ERLDKAEEALQSARekQAAAEEQLVQAN---GELEKASREETFARTALKNARLDLRRLFdekqSEKDKKNKA 672
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 387 LKRMEAHNNEYKAEIKKLKEQILQGEQSYSSALEGMKMEISHLTQELHQRDITIASTKGSSSDMEKRLRAEMQKAEDKAV 466
Cdd:pfam12128 673 LAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKAL 752
|
.
gi 2462592816 467 E 467
Cdd:pfam12128 753 E 753
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
31-537 |
1.64e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.17 E-value: 1.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 31 EAELQELMKQIDIMVAHKKSEWEGRTHALETCLKIREQELKSLRSQLDVTHKEVGMLHQQVEEHEKIKQEMTME---YKQ 107
Cdd:pfam01576 52 ETELCAEAEEMRARLAARKQELEEILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEkvtTEA 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 108 ELKKLHEELCILKRSYEKLQKkqmrefrgnTKNHREDRseIERLTAKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKala 187
Cdd:pfam01576 132 KIKKLEEDILLLEDQNSKLSK---------ERKLLEER--ISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLK--- 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 188 eQSEIIQAQLVNRKQKLESVELSSQSEIQHLSSKLERANDTICANELEIERLTMRVNDLVGTSMTVLQEQQQKEEKLREs 267
Cdd:pfam01576 198 -KEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISE- 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 268 ekLLEALQEEKRELKAALQSQENLIHEARIQKEKLQEKVKATNTQHAVEAIRPREESLAEKKYTSQGQGDlDSVLSQLNF 347
Cdd:pfam01576 276 --LQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSH-EAQLQEMRQ 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 348 THTSE-DLLQAEVTCLEGSLESVSATCKQLSQELMEKYEELKRMEAHNNEYKAEIKKLKEQiLQGEQSYSSALEGMKMEi 426
Cdd:pfam01576 353 KHTQAlEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQ-LQELQARLSESERQRAE- 430
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 427 shLTQELHQRDITIASTKGSSSDMEK---RLRAEMQKAEDKAVEHKEILDQLESLKLEnrhLSEMVMKLelglhEAKEIS 503
Cdd:pfam01576 431 --LAEKLSKLQSELESVSSLLNEAEGkniKLSKDVSSLESQLQDTQELLQEETRQKLN---LSTRLRQL-----EDERNS 500
|
490 500 510
....*....|....*....|....*....|....
gi 2462592816 504 LADLQENYIEALNKLVSENQQLQKDLMNTKSQLE 537
Cdd:pfam01576 501 LQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLE 534
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
145-329 |
1.90e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.44 E-value: 1.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 145 RSEIERLTAKIEEFRQksldwEKQRLiyQQQVSSLEAQRKALAEQSEIIQAQLVNRKQKLESVeLSSQSEIQHLSSKLER 224
Cdd:COG3883 36 QAELDALQAELEELNE-----EYNEL--QAELEALQAEIDKLQAEIAEAEAEIEERREELGER-ARALYRSGGSVSYLDV 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 225 ---ANDTicaNELeIERLTMrVNDLVGTSMTVLQEQQQKEEKLRESEKLLEALQEEKRELKAALQSQENLIHEARIQKEK 301
Cdd:COG3883 108 llgSESF---SDF-LDRLSA-LSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEA 182
|
170 180
....*....|....*....|....*...
gi 2462592816 302 LQEKVKAtNTQHAVEAIRPREESLAEKK 329
Cdd:COG3883 183 LLAQLSA-EEAAAEAQLAELEAELAAAE 209
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
145-314 |
2.10e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 2.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 145 RSEIERLTAKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEI---------IQAQLVNRKQKLESVELSSqSEI 215
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYswdeidvasAEREIAELEAELERLDASS-DDL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 216 QHLSSKLERAndticanELEIERLTMRVNDLVGTSMTVLQEQQQKEEKLRESEKLLEALQEEKR-ELKAALQSQ-ENLIH 293
Cdd:COG4913 688 AALEEQLEEL-------EAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARlELRALLEERfAAALG 760
|
170 180
....*....|....*....|...
gi 2462592816 294 EARIQK--EKLQEKVKATNTQHA 314
Cdd:COG4913 761 DAVERElrENLEERIDALRARLN 783
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
256-465 |
2.26e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.05 E-value: 2.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 256 EQQQKEEKLRESEKLLEALQEEKRELKAALQSQENLIHEARIQKEKLQEKVKATNTQ--HAVEAIRPREESLAEK---KY 330
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEiaEAEAEIEERREELGERaraLY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 331 TSQGQGD-LDSVLSQLNFThtseDLLQAEVTclegsLESVSATCKQLSQELMEKYEELKRMEAHNNEYKAEIKKLKEQIL 409
Cdd:COG3883 97 RSGGSVSyLDVLLGSESFS----DFLDRLSA-----LSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELE 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462592816 410 QGEQSYSSALEGMKMEISHLTQELHQRDITIASTKGSSSDMEKRLRAEMQKAEDKA 465
Cdd:COG3883 168 AAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAA 223
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
235-501 |
2.26e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.94 E-value: 2.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 235 EIERLTMRVNDLVGTSMTVLQEQqqkeeklrESEKLLEALQEEKRELKAALQSQENLIHEARIQKEKLQEKVKATN---- 310
Cdd:COG3096 810 KLQRLHQAFSQFVGGHLAVAFAP--------DPEAELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNkllp 881
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 311 -------TQHA--VEAIRPREESLAEKKYTSQGQGD----LDSVLSQLNFTHTSEDLLQAEVTCLEGSLESVSATCKQLS 377
Cdd:COG3096 882 qanlladETLAdrLEELREELDAAQEAQAFIQQHGKalaqLEPLVAVLQSDPEQFEQLQADYLQAKEQQRRLKQQIFALS 961
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 378 qELMEK-----YEELKRMEAHNNEYKaeiKKLKEQILQGEQSYSSALEGMKMEISHLTQeLHQRditIASTKGS------ 446
Cdd:COG3096 962 -EVVQRrphfsYEDAVGLLGENSDLN---EKLRARLEQAEEARREAREQLRQAQAQYSQ-YNQV---LASLKSSrdakqq 1033
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462592816 447 ----------------SSDMEKRLRAEMQKAEDKAVEHKEILDQLE----SLKLENRHLSEMVMKLELGLHEAKE 501
Cdd:COG3096 1034 tlqeleqeleelgvqaDAEAEERARIRRDELHEELSQNRSRRSQLEkqltRCEAEMDSLQKRLRKAERDYKQERE 1108
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
67-312 |
2.36e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.78 E-value: 2.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 67 EQELKSLRSQldvthkEVGMLHQQVEE----HEKIKQEMTMEYKQELKKLHEELCILKRSYEKLQK-KQMREfrgntKNH 141
Cdd:pfam01576 318 QQELRSKREQ------EVTELKKALEEetrsHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKaKQALE-----SEN 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 142 REDRSEIERLTAKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLVNRKQKLESVE---LSSQSEIQHL 218
Cdd:pfam01576 387 AELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEgknIKLSKDVSSL 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 219 SSKLERANDTICANELEIERLTMRVNDLVGTSMTVLQEQQQKEEKLRESEKLLEALQEEKRELKAALQSQENLIHEARIQ 298
Cdd:pfam01576 467 ESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEG 546
|
250
....*....|....
gi 2462592816 299 KEKLQEKVKATNTQ 312
Cdd:pfam01576 547 KKRLQRELEALTQQ 560
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
67-345 |
2.40e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.56 E-value: 2.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 67 EQELKSLRSQL-------DVTHKEVGMLHQQVEEHEKIKQ-------------EMTMEYKQELKKLHEELCILKRsyeKL 126
Cdd:PRK04863 389 EEEVDELKSQLadyqqalDVQQTRAIQYQQAVQALERAKQlcglpdltadnaeDWLEEFQAKEQEATEELLSLEQ---KL 465
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 127 QKKQM--REFRGNTKNHREDRSEIERLTAKiEEFRQKSLDWEKQRlIYQQQVSSLEAQRKALAEQSEIIQA--QLVNRKQ 202
Cdd:PRK04863 466 SVAQAahSQFEQAYQLVRKIAGEVSRSEAW-DVARELLRRLREQR-HLAEQLQQLRMRLSELEQRLRQQQRaeRLLAEFC 543
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 203 KLESVELSSQSEIQHLSSKLERandticanelEIERLTMRVNDLVGTSMTVLQEQQQKEEKLREseklLEALQEEKRELK 282
Cdd:PRK04863 544 KRLGKNLDDEDELEQLQEELEA----------RLESLSESVSEARERRMALRQQLEQLQARIQR----LAARAPAWLAAQ 609
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462592816 283 AAL-----QSQENLIHEARI--QKEKLQEKVKAtnTQHAVEAIRPREESL-AEKKYTSQGQGDLDSVLSQL 345
Cdd:PRK04863 610 DALarlreQSGEEFEDSQDVteYMQQLLERERE--LTVERDELAARKQALdEEIERLSQPGGSEDPRLNAL 678
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
70-549 |
2.62e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.44 E-value: 2.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 70 LKSLRSQLDVTHKEVGMLHQQVEEHEKIKQEMTMEYKQELKKLHEELcilkrsyeklqKKQMREFRGNTKNHRED----R 145
Cdd:pfam12128 253 LESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQW-----------KEKRDELNGELSAADAAvakdR 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 146 SEIERLTAKIEEFRQKSLDWEKQRL----IYQQQVSSLEAQRKALAEQSEIIQAQLVNRKQKlesVELSSQSEIQHLSSK 221
Cdd:pfam12128 322 SELEALEDQHGAFLDADIETAAADQeqlpSWQSELENLEERLKALTGKHQDVTAKYNRRRSK---IKEQNNRDIAGIKDK 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 222 LERANDTICANELEIErltmrvNDLVGTSMTVLQEQQQKEEKLRESEKLLE-ALQEEKRELKAALQSQENLIHEARIQK- 299
Cdd:pfam12128 399 LAKIREARDRQLAVAE------DDLQALESELREQLEAGKLEFNEEEYRLKsRLGELKLRLNQATATPELLLQLENFDEr 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 300 -EKLQEKVKATNT-----QHAVEAIRPREESLAEK-----KYTSQGQGDLDSVLSQLN-FTHTSEDLLQAEVTCLEGSLE 367
Cdd:pfam12128 473 iERAREEQEAANAeverlQSELRQARKRRDQASEAlrqasRRLEERQSALDELELQLFpQAGTLLHFLRKEAPDWEQSIG 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 368 SVSATCKQLSQELMEKYEE---------------LKRMEAhnNEYKAEIKKLKEQILQGEQSYSSALEGMKMEISHLTQ- 431
Cdd:pfam12128 553 KVISPELLHRTDLDPEVWDgsvggelnlygvkldLKRIDV--PEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQa 630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 432 ----ELHQRDITIASTKGSSSDME-KRLRAEMQKAEDKAveHKEILDQLESLKLENRHLSEMVMKLELGLHEAKEISLAD 506
Cdd:pfam12128 631 ngelEKASREETFARTALKNARLDlRRLFDEKQSEKDKK--NKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQ 708
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 2462592816 507 LQENYIEALNKL--VSENQQLQKDLMNT-----KSQLEISTQMCKKQNDR 549
Cdd:pfam12128 709 KREARTEKQAYWqvVEGALDAQLALLKAaiaarRSGAKAELKALETWYKR 758
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
29-229 |
3.33e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 3.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 29 SCEAELQELMKQIDIMVAhKKSEWEgrthALETCLKIREQELKSLRSQLDVTHKEVGMLHQQVEEHEKIKQE--MTMEYK 106
Cdd:COG4913 665 SAEREIAELEAELERLDA-SSDDLA----ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDElqDRLEAA 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 107 QELKKLHEELCILKRSYEKLQKKQMREFRGNTKNHRED-RSEIERLTAKIEE-FRQKSLDWekqRLIYQQQVSSLEAQRK 184
Cdd:COG4913 740 EDLARLELRALLEERFAAALGDAVERELRENLEERIDAlRARLNRAEEELERaMRAFNREW---PAETADLDADLESLPE 816
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2462592816 185 ALAEQSEIIQAQLVNRKQKL-ESVELSSQSEIQHLSSKLERANDTI 229
Cdd:COG4913 817 YLALLDRLEEDGLPEYEERFkELLNENSIEFVADLLSKLRRAIREI 862
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
142-308 |
3.55e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 3.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 142 REDRSEIERLTAKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLVNRKQKLESVelSSQSEIQHLSSK 221
Cdd:COG1579 20 DRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNV--RNNKEYEALQKE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 222 LERANDTICANELEIERLTMRVNDLvgtsmtvlqeQQQKEEKLRESEKLLEALQEEKRELKAALQSQENLIHEARIQKEK 301
Cdd:COG1579 98 IESLKRRISDLEDEILELMERIEEL----------EEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREE 167
|
....*..
gi 2462592816 302 LQEKVKA 308
Cdd:COG1579 168 LAAKIPP 174
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
98-509 |
4.13e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 43.74 E-value: 4.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 98 KQEMTMEYKQELKKLHEELCILKRSYEKLqKKQMREFRGNTKNHREDRSEIERLTAKIEEFRQKSLDWEKQrliYQQQVS 177
Cdd:PRK01156 323 KYHAIIKKLSVLQKDYNDYIKKKSRYDDL-NNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAF---ISEILK 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 178 SLEAQRKALAEQSEIIQAQLVNRKQKLESVELSSQSEIQHLSSKLERAND-------TICANELEIERLTMRVNDLVgts 250
Cdd:PRK01156 399 IQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMlngqsvcPVCGTTLGEEKSNHIINHYN--- 475
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 251 mtvlQEQQQKEEKLRESEKLLEALQEEKRELKAAlqsqenlihEARIQKEKLQEKVKATN----TQHAVEAIRPREESLA 326
Cdd:PRK01156 476 ----EKKSRLEEKIREIEIEVKDIDEKIVDLKKR---------KEYLESEEINKSINEYNkiesARADLEDIKIKINELK 542
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 327 EK---------KYTSQGQGDLDSVLSQLNFTHTSEDLLQAEVtcLEGSLESVSATCKQLSQELMEKYEELKRMEAHNNEY 397
Cdd:PRK01156 543 DKhdkyeeiknRYKSLKLEDLDSKRTSWLNALAVISLIDIET--NRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKS 620
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 398 kaeIKKLKEQILQGEQSYS------SALEGMKMEISHLTQELHQRDITIASTKGSSS---DMEKRLRAEMQKAEDKAVEH 468
Cdd:PRK01156 621 ---IREIENEANNLNNKYNeiqenkILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSrinDIEDNLKKSRKALDDAKANR 697
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 2462592816 469 KEILDQLESLKLENRHLSEMVMKLELGLHEAKEI--SLADLQE 509
Cdd:PRK01156 698 ARLESTIEILRTRINELSDRINDINETLESMKKIkkAIGDLKR 740
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
31-295 |
4.45e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.90 E-value: 4.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 31 EAELQELMKQIdimvahkkSEWEGRTHALETCLKIREQELKSLRSQLdvthkevgmlhqqveEHEKIKQEMTMEYKQELK 110
Cdd:TIGR02169 797 QAELSKLEEEV--------SRIEARLREIEQKLNRLTLEKEYLEKEI---------------QELQEQRIDLKEQIKSIE 853
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 111 KLHEELCILKRSYEKLQKKQMREFRGNTKNHREDRSEIERLTAKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQS 190
Cdd:TIGR02169 854 KEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEEL 933
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 191 EIIQAQLvnRKQKLESVELSSQSEIQhlssklerandticaneLEIERLTMRVNDLVGTSMTVLQEQQQKEEKLRESEKL 270
Cdd:TIGR02169 934 SEIEDPK--GEDEEIPEEELSLEDVQ-----------------AELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEK 994
|
250 260
....*....|....*....|....*
gi 2462592816 271 LEALQEEKRELKAALQSQENLIHEA 295
Cdd:TIGR02169 995 RAKLEEERKAILERIEEYEKKKREV 1019
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
104-521 |
5.72e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 5.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 104 EYKQELKKLHEELCILKRSYEKLQkkQMREFRGNTKNHREDRSEIERLTAKIEEFRQKSLDWEKQRLIYQQQVSSLEAQR 183
Cdd:COG4717 92 ELQEELEELEEELEELEAELEELR--EELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELE 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 184 KALAEQSEIIQaqlvnrkQKLESVELSSQSEIQHLSSKLERANDTICANELEIERLTMRVNDlvgtsmtvLQEQQQKEEK 263
Cdd:COG4717 170 AELAELQEELE-------ELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEE--------LEEELEQLEN 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 264 LRESEKLLEALQEEKRELKAA------------LQSQENLIHEARI---------------QKEKLQEKVKATNTQHAVE 316
Cdd:COG4717 235 ELEAAALEERLKEARLLLLIAaallallglggsLLSLILTIAGVLFlvlgllallflllarEKASLGKEAEELQALPALE 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 317 AIRPRE-ESLAEKKYTSQGQ-----GDLDSVLSQLNFTHTSEDLLQAEVTcLEGSLESVSATCKQLSQELMEKYEELKRM 390
Cdd:COG4717 315 ELEEEElEELLAALGLPPDLspeelLELLDRIEELQELLREAEELEEELQ-LEELEQEIAALLAEAGVEDEEELRAALEQ 393
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 391 EAHNNEYKAEIKKLKEQILQGEQSYSSALEGMKMEisHLTQELHQRDITIASTKGSSSDMEKR---LRAEMQKAEDKAvE 467
Cdd:COG4717 394 AEEYQELKEELEELEEQLEELLGELEELLEALDEE--ELEEELEELEEELEELEEELEELREElaeLEAELEQLEEDG-E 470
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 2462592816 468 HKEILDQLESLKLENRHLSEMVMKLELGLHEAKEIsLADLQENYIEALNKLVSE 521
Cdd:COG4717 471 LAELLQELEELKAELRELAEEWAALKLALELLEEA-REEYREERLPPVLERASE 523
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
63-548 |
6.08e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.09 E-value: 6.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 63 LKIREQELKSLRSQLDVTHKEVGMLHQQVEEHEKIKQEMT---MEYKQELKKLHEELCILKrSYEKLQKKQM-------- 131
Cdd:TIGR04523 49 LKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNdklKKNKDKINKLNSDLSKIN-SEIKNDKEQKnkleveln 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 132 ---REFRGNTKNHREDRSEIERLTAKIEEFRQKSLDWEKQRLiyqqqvsSLEAQRKALAEQSEIIQAQLVNRKQKLesve 208
Cdd:TIGR04523 128 kleKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKE-------ELENELNLLEKEKLNIQKNIDKIKNKL---- 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 209 lssqSEIQHLSSKLERANDTICANELEIERLTMRVNDLVGTSMTVLQEQQQKEEKLRESEKLLEALQEEKRELKAALQSQ 288
Cdd:TIGR04523 197 ----LKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEK 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 289 ENLIHEARIQKEKLQEKVKATNTQHAVEAIRPREESLAE-KKYTSQGQGDLDSVLSQLNFTHTSEDLLQAEVTCLEGSLE 367
Cdd:TIGR04523 273 QKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKElKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELT 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 368 SVSATCKQLSQELMEKYEELKRMEAHNNEYKAEIKKLKEQILQGEQsyssalegmkmEISHLTQELHQRDITIASTKGSS 447
Cdd:TIGR04523 353 NSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLES-----------KIQNQEKLNQQKDEQIKKLQQEK 421
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 448 SDMEKrlraemqkaedkavEHKEILDQLESLKLENRHLSEMVMKLELGLHEAKeiSLADLQENYIEALNKLVSENQQlqk 527
Cdd:TIGR04523 422 ELLEK--------------EIERLKETIIKNNSEIKDLTNQDSVKELIIKNLD--NTRESLETQLKVLSRSINKIKQ--- 482
|
490 500
....*....|....*....|.
gi 2462592816 528 DLMNTKSQLEISTQMCKKQND 548
Cdd:TIGR04523 483 NLEQKQKELKSKEKELKKLNE 503
|
|
| GAS |
pfam13851 |
Growth-arrest specific micro-tubule binding; This family is the highly conserved central ... |
67-218 |
6.85e-04 |
|
Growth-arrest specific micro-tubule binding; This family is the highly conserved central region of a number of metazoan proteins referred to as growth-arrest proteins. In mouse, Gas8 is predominantly a testicular protein, whose expression is developmentally regulated during puberty and spermatogenesis. In humans, it is absent in infertile males who lack the ability to generate gametes. The localization of Gas8 in the motility apparatus of post-meiotic gametocytes and mature spermatozoa, together with the detection of Gas8 also in cilia at the apical surfaces of epithelial cells lining the pulmonary bronchi and Fallopian tubes suggests that the Gas8 protein may have a role in the functioning of motile cellular appendages. Gas8 is a microtubule-binding protein localized to regions of dynein regulation in mammalian cells.
Pssm-ID: 464001 [Multi-domain] Cd Length: 200 Bit Score: 41.43 E-value: 6.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 67 EQELKSLRSQLDVTHKEVGMLHQQVEEHEKIKQEMtMEYKQELKKLHEELCILKRSYEKLQKKqmrefrgNTKNHREDRS 146
Cdd:pfam13851 53 QQENKRLTEPLQKAQEEVEELRKQLENYEKDKQSL-KNLKARLKVLEKELKDLKWEHEVLEQR-------FEKVERERDE 124
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462592816 147 EIERLTAKIEEFRQKSldwEKQRLIYQQQVSSL-------EAQRKALAEQSEIIQAQLVNRKQKLESVELSSQSEIQHL 218
Cdd:pfam13851 125 LYDKFEAAIQDVQQKT---GLKNLLLEKKLQALgetlekkEAQLNEVLAAANLDPDALQAVTEKLEDVLESKNQLIKDL 200
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
64-527 |
1.00e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.73 E-value: 1.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 64 KIREQELKSLRSQLDVTHKEVGMLHQQVEEHEKIKQEmtmeYKQELKKLHEELCILKRSYEKLQKKQMREfrgntknhre 143
Cdd:TIGR00606 573 KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNH----INNELESKEEQLSSYEDKLFDVCGSQDEE---------- 638
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 144 drSEIERLTAKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSeiiqaqlvnrkQKLESVELSSQSEIQHLSSKLE 223
Cdd:TIGR00606 639 --SDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVC-----------QRVFQTEAELQEFISDLQSKLR 705
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 224 RANDTICANELEIERLTMRVNDLVGTSMTVLQEQQQKEEKLRESEKLLEALQEEKRELKAALQSQENLIhEARIQKEKLQ 303
Cdd:TIGR00606 706 LAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLL-GTIMPEEESA 784
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 304 E--KVKATNTQHAVEAIRPREESLAEKKYTSQGQgDLDSVLSQLNfthtsedllqAEVTCLEGSLESVSATCKQLSQELM 381
Cdd:TIGR00606 785 KvcLTDVTIMERFQMELKDVERKIAQQAAKLQGS-DLDRTVQQVN----------QEKQEKQHELDTVVSKIELNRKLIQ 853
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 382 EKYEELKRMEAHNNEYKAEIKKLKEQiLQGEQSYSSALEGMKMEISHLTQELHQRDITIASTKGSSSDMEKRLRAEMQKA 461
Cdd:TIGR00606 854 DQQEQIQHLKSKTNELKSEKLQIGTN-LQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSK 932
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462592816 462 EDkavEHKEILDQLESLKLENRHLSEMVMKLELGLHEAKEISLADlQENYIEALNKLVSENQQLQK 527
Cdd:TIGR00606 933 ET---SNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQ-KETELNTVNAQLEECEKHQE 994
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
242-346 |
1.04e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.51 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 242 RVNDLVGTSMTVLQEQQQKEE----KLRESEKLLEALQEEKRELKAAlqsQENLIHEariQKEKLQEKVKAtnTQHAVEA 317
Cdd:PRK00409 517 KLNELIASLEELERELEQKAEeaeaLLKEAEKLKEELEEKKEKLQEE---EDKLLEE---AEKEAQQAIKE--AKKEADE 588
|
90 100
....*....|....*....|....*....
gi 2462592816 318 IRPREESLAEKKYTSQGQGDLDSVLSQLN 346
Cdd:PRK00409 589 IIKELRQLQKGGYASVKAHELIEARKRLN 617
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
104-350 |
1.12e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.19 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 104 EYKQELKKLHEELCILKRSYEKLQKKQMREFRGNTKNHREDRSEIERLTAKIEEFRQKSLDWEKQRLIYQQQVSSLEAQR 183
Cdd:pfam07888 38 ECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEK 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 184 KALAEQSEiiqaqlvnrkqklesvelSSQSEIQHLSSKLERANDTICANELEIERLTMRVNDLVGTSMTVLQEQQQKEEK 263
Cdd:pfam07888 118 DALLAQRA------------------AHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAK 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 264 LRESEKLLEALQEEKRELKAALQSQENLIHEARIQKEKLQEKVKATNTQHA-VEAIRPREESLAEKKYTSQGQ-----GD 337
Cdd:pfam07888 180 LQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAeNEALLEELRSLQERLNASERKveglgEE 259
|
250
....*....|...
gi 2462592816 338 LDSVLSQLNFTHT 350
Cdd:pfam07888 260 LSSMAAQRDRTQA 272
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
200-521 |
1.30e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.33 E-value: 1.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 200 RKQKLESVELSSQSEIQHLSSKLERANDTICAnELEIERLTMRVNDLVgtsmtvlQEQQQKEEKLRESEKLLEALQEEKR 279
Cdd:PRK02224 476 RVEELEAELEDLEEEVEEVEERLERAEDLVEA-EDRIERLEERREDLE-------ELIAERRETIEEKRERAEELRERAA 547
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 280 ELKAALQSQENLIHEARIQKEKLQEKVKATNTQhaveairpreeslaekkytsqgQGDLDSVLSQLNFTHTSEDLLqaev 359
Cdd:PRK02224 548 ELEAEAEEKREAAAEAEEEAEEAREEVAELNSK----------------------LAELKERIESLERIRTLLAAI---- 601
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 360 tclegslesvsATCKQLSQELMEKYEELKRMeahNNEYKAEIKKLKEQILQGEQSY-SSALEGMKMEISHLTQELHQRDI 438
Cdd:PRK02224 602 -----------ADAEDEIERLREKREALAEL---NDERRERLAEKRERKRELEAEFdEARIEEAREDKERAEEYLEQVEE 667
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 439 TIASTKGSSSDMEKRLraemqkaedKAVEHKeiLDQLESLKLENRHLSEMVMKLELGLHEAKEIS------LADLQENYI 512
Cdd:PRK02224 668 KLDELREERDDLQAEI---------GAVENE--LEELEELRERREALENRVEALEALYDEAEELEsmygdlRAELRQRNV 736
|
....*....
gi 2462592816 513 EALNKLVSE 521
Cdd:PRK02224 737 ETLERMLNE 745
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
66-501 |
1.31e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.02 E-value: 1.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 66 REQELKSLRSQLDVTHKEVgmlhQQVEEHEKIKQEMTMEYKQELKKLHEELCILKRSYEKLQKKQmrefrgntKNHREDR 145
Cdd:pfam05483 252 KENKMKDLTFLLEESRDKA----NQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQ--------KALEEDL 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 146 SEIERLTAKIEEFRQKSLD-WEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLVNRKQKLESVELssqsEIQHLSSKLER 224
Cdd:pfam05483 320 QIATKTICQLTEEKEAQMEeLNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITM----ELQKKSSELEE 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 225 ANDTICANELEIERLTmrvndlvgtsmTVLQEQQQKEEKLRESEKLLEALQEEKRELKAALQSQENLIHEARIQKeklqe 304
Cdd:pfam05483 396 MTKFKNNKEVELEELK-----------KILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQL----- 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 305 KVKATNTQHAVEAIRPREESLAEKKYTSQGQGDLDSVLSQLNFTHTSEdllQAEVTCLEGSLESVSATCKQLSQELMEKY 384
Cdd:pfam05483 460 TAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQE---ASDMTLELKKHQEDIINCKKQEERMLKQI 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 385 EELKRMEAhnnEYKAEIKKLKEQILQGEQSYSSALEGMKMEISHLTQELHQRDITIASTKGSSSDMEKRLRAEMQKAEDK 464
Cdd:pfam05483 537 ENLEEKEM---NLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEEL 613
|
410 420 430
....*....|....*....|....*....|....*..
gi 2462592816 465 AVEHKEILDQLESLKLENRHLSEMVMKLELGLHEAKE 501
Cdd:pfam05483 614 HQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQ 650
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
106-308 |
1.51e-03 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 41.60 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 106 KQELKKLHEELCILKRSYEKLQKKQmrefrgntknhREDRSEIERLTAKIEEFRQ--------KSLDWEKQRLIYQQQV- 176
Cdd:COG0497 157 LEEYREAYRAWRALKKELEELRADE-----------AERARELDLLRFQLEELEAaalqpgeeEELEEERRRLSNAEKLr 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 177 SSLEAQRKALAEQSEIIQAQLVNRKQKLESVE-------------LSSQSEIQHLSSKLERANDTICANELEIERLTMRV 243
Cdd:COG0497 226 EALQEALEALSGGEGGALDLLGQALRALERLAeydpslaelaerlESALIELEEAASELRRYLDSLEFDPERLEEVEERL 305
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462592816 244 NDLVGTS----------MTVLQEQQQKEEKLRESEKLLEALQEEKRELKAALQSQENLIHEARIQK-EKLQEKVKA 308
Cdd:COG0497 306 ALLRRLArkygvtveelLAYAEELRAELAELENSDERLEELEAELAEAEAELLEAAEKLSAARKKAaKKLEKAVTA 381
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
262-465 |
1.51e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 262 EKLRESEKLLEALQEEKRELKAALQSQENLIHEARIQKEKLQEKVKATNTQHAV-----------------------EAI 318
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRAleqelaaleaelaelekeiaelrAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 319 RPREESLAEKKYTSQGQGDLDSVLSQLNfthtSEDLLQAEVTclEGSLESVSATCKQLSQELMEKYEELKRMEAHNNEYK 398
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLALLLS----PEDFLDAVRR--LQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462592816 399 AEIKKLKEQILQGEQSYSSALEGMKMEISHLTQELHQRDITIASTKGSSSDMEKRLRAEMQKAEDKA 465
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
149-478 |
1.85e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.96 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 149 ERLTAKIEEFRQKSLDWEKQRLIYQQ-QVSSLEAQRKALAEQSEIIQAQLVNRKQKLESVELSS-QSEIQHLSSKLERAN 226
Cdd:TIGR00606 189 ETLRQVRQTQGQKVQEHQMELKYLKQyKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNrLKEIEHNLSKIMKLD 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 227 DTICA---NELEIERLTMRVNDLVGTSMTVLQEQ------------QQKEEKLRESEKLLEALQEEKRELKAALQSQENL 291
Cdd:TIGR00606 269 NEIKAlksRKKQMEKDNSELELKMEKVFQGTDEQlndlyhnhqrtvREKERELVDCQRELEKLNKERRLLNQEKTELLVE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 292 IHEARIQKEKLQEKVKATNTQHAVEAIRPREESLAEKKYTS-----------QGQGDLDSVLSQL-NFTHTSEDLLQAEV 359
Cdd:TIGR00606 349 QGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSErqiknfhtlviERQEDEAKTAAQLcADLQSKERLKQEQA 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 360 TCLEGSLESVSATCKQLSQELMEKYEELKRMEAHNNEYKAEIKKlkeqILQGEQSYSSALEGM-KMEISHLTQELHQRDI 438
Cdd:TIGR00606 429 DEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDR----ILELDQELRKAERELsKAEKNSLTETLKKEVK 504
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 2462592816 439 tiaSTKGSSSDMEKRLRAEMQKAEDKAvEHKEILDQLESL 478
Cdd:TIGR00606 505 ---SLQNEKADLDRKLRKLDQEMEQLN-HHTTTRTQMEML 540
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
202-312 |
2.42e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 40.72 E-value: 2.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 202 QKLESVELSSQ-SEIQHLSSKLERANDTICANELEIERLTMRVNDLVGTSMTVLQEQQQKEEKLRESEKLLEALQEEKRE 280
Cdd:PRK09039 41 QFFLSREISGKdSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGE 120
|
90 100 110
....*....|....*....|....*....|..
gi 2462592816 281 LKAALQSQENLIHEARIQKEKLQEKVKATNTQ 312
Cdd:PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRQ 152
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
27-418 |
2.97e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 2.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 27 LTSCEAELQELMKQID-IMVAHKKSEWEGRTHALETCLKIREQELKSLRSQLDVTHKEVGMLHQQVEEHEKIKQEMTMEY 105
Cdd:COG4717 104 LEELEAELEELREELEkLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELL 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 106 KQELKKLHEELCILKRSYEKLQKKQMREfrgnTKNHREDRSEIERLTAKIEEFRQKSLDWEKQRLIYQQQ--------VS 177
Cdd:COG4717 184 EQLSLATEEELQDLAEELEELQQRLAEL----EEELEEAQEELEELEEELEQLENELEAAALEERLKEARlllliaaaLL 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 178 SLEAQRKALAEQSEIIQAQLVNRKQKLESVELSSQSEIQHLSSKLERANDTICANELEIERLTMRV----------NDLV 247
Cdd:COG4717 260 ALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLaalglppdlsPEEL 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 248 GTSMTVLQEQQQKEEKLRESEK--LLEALQEEKREL--KAALQSQENLIHEARIQKEKLQEKVKATNTQHAVEAIRPREE 323
Cdd:COG4717 340 LELLDRIEELQELLREAEELEEelQLEELEQEIAALlaEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELE 419
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 324 SLAEKkytsqgqgdldsvlsqlnfthTSEDLLQAEVTCLEGSLESVSATCKQLSQELMEKYEELKRMEAHNN--EYKAEI 401
Cdd:COG4717 420 ELLEA---------------------LDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGElaELLQEL 478
|
410
....*....|....*..
gi 2462592816 402 KKLKEQILQGEQSYSSA 418
Cdd:COG4717 479 EELKAELRELAEEWAAL 495
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
64-563 |
3.86e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.89 E-value: 3.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 64 KIREQELKSLRSQLDVTHKEVGMLHQQVEEHEKIKQEMTMEYKQ---ELKKLHEelcilKRSYEKLQKK--QMREFRGNT 138
Cdd:PTZ00121 1247 EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKkadEAKKAEE-----KKKADEAKKKaeEAKKADEAK 1321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 139 KNHREDRSEIERLTAKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLVNRKQKLEsvELSSQSEIQHL 218
Cdd:PTZ00121 1322 KKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE--EKKKADEAKKK 1399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 219 SSKLERANDTICANELEIERltmrvndlvgtsmtvLQEQQQKEEKLRESEKLLEALQEEKRELKAALQSQENliHEARIQ 298
Cdd:PTZ00121 1400 AEEDKKKADELKKAAAAKKK---------------ADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA--KKAEEA 1462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 299 KEKLQEKVKATNTQHAVEAIRPREESlaeKKYTSQGQGDLDSVLSQLNFTHTSEDLLQAEVTclEGSLESVSATCKQLSQ 378
Cdd:PTZ00121 1463 KKKAEEAKKADEAKKKAEEAKKADEA---KKKAEEAKKKADEAKKAAEAKKKADEAKKAEEA--KKADEAKKAEEAKKAD 1537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 379 ELMEKYEELKRMEAHNNE--YKAEIKKLKEQILQGEQSYSSALEgmKMEISHLTQELHQRDITIASTKGSSSDMEKRLRA 456
Cdd:PTZ00121 1538 EAKKAEEKKKADELKKAEelKKAEEKKKAEEAKKAEEDKNMALR--KAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKA 1615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 457 EMQ--KAED--KAVEHKEILDQLESLKLENRHLSEMVMKLE--LGLHEAKEISLADLQENYIEALNKLVSENQQLQKDLM 530
Cdd:PTZ00121 1616 EEAkiKAEElkKAEEEKKKVEQLKKKEAEEKKKAEELKKAEeeNKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALK 1695
|
490 500 510
....*....|....*....|....*....|...
gi 2462592816 531 NTKSQLEISTQMCKKQNDRIFKPTHSRTTEFKN 563
Cdd:PTZ00121 1696 KEAEEAKKAEELKKKEAEEKKKAEELKKAEEEN 1728
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
63-433 |
4.07e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.80 E-value: 4.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 63 LKIREQELKSLRSQLDVTHKEVGMLHQQVEEHEKIKQEMTMEY-------KQELKKLHEELCILKRSYEKLQKKQMREFR 135
Cdd:TIGR00606 250 LKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMekvfqgtDEQLNDLYHNHQRTVREKERELVDCQRELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 136 GNTKNHR-------EDRSEIERLTAKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLVNRKQK----- 203
Cdd:TIGR00606 330 KLNKERRllnqektELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQEdeakt 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 204 -------LESVELSSQSEIQHLSSKLERANDTIcanELEIERLTMRVNDLvgtsMTVLQEQQQKEEKLRESEKLLEALQE 276
Cdd:TIGR00606 410 aaqlcadLQSKERLKQEQADEIRDEKKGLGRTI---ELKKEILEKKQEEL----KFVIKELQQLEGSSDRILELDQELRK 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 277 EKRELKAALQS---QENLIHEARIQKEKLQEKVKATNTQHAVEAIRPREESLAEKKYTSQGQGDLDSVLSQLNFTHTSED 353
Cdd:TIGR00606 483 AERELSKAEKNsltETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDEL 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 354 LLQA----EVTCLEGSLESVSATCKQLSQELMEKYEELKRMEAHNNEYKAEIKKLKEQILQ---------GEQSYSSALE 420
Cdd:TIGR00606 563 TSLLgyfpNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSyedklfdvcGSQDEESDLE 642
|
410
....*....|...
gi 2462592816 421 GMKMEISHLTQEL 433
Cdd:TIGR00606 643 RLKEEIEKSSKQR 655
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
69-328 |
5.95e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.05 E-value: 5.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 69 ELKSLRSQLDVTHKEvgMLHQQVEEHEKIKQEmtmeykqeLKKLHEELCILKRSYEKLQ--KKQMREFRGNTKNHREDRS 146
Cdd:PRK03918 504 QLKELEEKLKKYNLE--ELEKKAEEYEKLKEK--------LIKLKGEIKSLKKELEKLEelKKKLAELEKKLDELEEELA 573
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 147 EIERltaKIEEFRQKSLDWEKQRLiyqqqvSSLEAQRKALAEqseiiqaqLVNRKQKLESVElssqSEIQHLSSKLERAN 226
Cdd:PRK03918 574 ELLK---ELEELGFESVEELEERL------KELEPFYNEYLE--------LKDAEKELEREE----KELKKLEEELDKAF 632
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 227 DTICANELEIERLTMRVNDLvgTSMTVLQEQQQKEEKLRESEKLLEALQEEKRELKAALQSQENLIHEARIQKEKLQEKV 306
Cdd:PRK03918 633 EELAETEKRLEELRKELEEL--EKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAK 710
|
250 260
....*....|....*....|..
gi 2462592816 307 KATNTqhaVEAIRPREESLAEK 328
Cdd:PRK03918 711 KELEK---LEKALERVEELREK 729
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
254-536 |
8.25e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 39.70 E-value: 8.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 254 LQEQQQKEEKLRESEKLLEALQEEKRELKaaLQSQENLIHEARIQKEKLQEKVK-----------------------ATN 310
Cdd:pfam05483 227 LEEEYKKEINDKEKQVSLLLIQITEKENK--MKDLTFLLEESRDKANQLEEKTKlqdenlkeliekkdhltkelediKMS 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 311 TQHAVEAIRPREESLA-EKKYTSQGQGDLDSVLSQLNFTHTSEDLLQAEVTCLEGSLESVSATCKQ-----------LSQ 378
Cdd:pfam05483 305 LQRSMSTQKALEEDLQiATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQrleknedqlkiITM 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 379 ELMEKYEELKRMEAHNNEYKAEIKKLKEQILQGE---------QSYSSALEGMKMEISHLTQ----ELHQRDITIASTKG 445
Cdd:pfam05483 385 ELQKKSSELEEMTKFKNNKEVELEELKKILAEDEklldekkqfEKIAEELKGKEQELIFLLQarekEIHDLEIQLTAIKT 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 446 SSSDMEKRLRAEMQKAEDKAVEHKEILDQLESLKLENRHLSEMV--MKLELGLHEAKEISLADLQENYIEALNKLVSENQ 523
Cdd:pfam05483 465 SEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEAsdMTLELKKHQEDIINCKKQEERMLKQIENLEEKEM 544
|
330
....*....|...
gi 2462592816 524 QLQKDLMNTKSQL 536
Cdd:pfam05483 545 NLRDELESVREEF 557
|
|
| Gp58 |
pfam07902 |
gp58-like protein; Sequences found in this family are derived from a number of bacteriophage ... |
248-455 |
8.89e-03 |
|
gp58-like protein; Sequences found in this family are derived from a number of bacteriophage and prophage proteins. They are similar to gp58, a minor structural protein of Lactococcus delbrueckii bacteriophage LL-H.
Pssm-ID: 369586 [Multi-domain] Cd Length: 594 Bit Score: 39.17 E-value: 8.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 248 GTSMTVLQEQQQKEEKLRES-EKLLEALQEEKRELKAALQSQ-ENLIHEARIQKEKLQEKVKATNTQhaVEAIRPREESL 325
Cdd:pfam07902 132 GIATRISEDTDKKLALINETiSGIRREYQDADRQLSSSYQAGiEGLKATMASDKIGLQAEIQASAQG--LSQRYDNEIRK 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 326 AEKKYTSQGQGDLDSVLSQL-----NFTHTSEDLLQAEVTCLEGSLESVSATCKQLSQELMEKYEELKRMEahnneykAE 400
Cdd:pfam07902 210 LSAKITTTSSGTTEAYESKLddlraEFTRSNQGMRTELESKISGLQSTQQSTAYQISQEISNREGAVSRVQ-------QD 282
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462592816 401 IKKLKEQILQGEQSYSS---ALEGMKMEISHLTQELHQRDITIA---STKGSSSDMEKRLR 455
Cdd:pfam07902 283 LDSYQRRLQDAEKNYSSltqTVKGLQSTVSDPNSKLESRITQLAgliEQKVTRGDVESIIR 343
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
222-501 |
9.16e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 39.56 E-value: 9.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 222 LERANDTICANELEIERLTMRVNDLVGTSMTVLQEQqqkeeklrESEKLLEALQEEKRELKAALQSQENLIHEARIQKEK 301
Cdd:PRK04863 798 LAERYATLSFDVQKLQRLHQAFSRFIGSHLAVAFEA--------DPEAELRQLNRRRVELERALADHESQEQQQRSQLEQ 869
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 302 LQEKVKATN--------------TQHAVEAIRPREESLAEKKYTSQGQG---DLDSVLSQLNFTHTSEDLLQAEVTCLEG 364
Cdd:PRK04863 870 AKEGLSALNrllprlnlladetlADRVEEIREQLDEAEEAKRFVQQHGNalaQLEPIVSVLQSDPEQFEQLKQDYQQAQQ 949
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 365 SLESVSATCKQLSqELME-----KYEELKRMEAHNNEYKaeiKKLKEQILQGEQSYSSALEGMKMEISHLTQElHQRDIT 439
Cdd:PRK04863 950 TQRDAKQQAFALT-EVVQrrahfSYEDAAEMLAKNSDLN---EKLRQRLEQAEQERTRAREQLRQAQAQLAQY-NQVLAS 1024
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 440 IASTKGSSSDMEKRLRAEMQK--------AEDKAVEHKEILD---------------QLESLKLENRHLSEMVMKLELGL 496
Cdd:PRK04863 1025 LKSSYDAKRQMLQELKQELQDlgvpadsgAEERARARRDELHarlsanrsrrnqlekQLTFCEAEMDNLTKKLRKLERDY 1104
|
....*
gi 2462592816 497 HEAKE 501
Cdd:PRK04863 1105 HEMRE 1109
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
263-491 |
9.54e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 39.23 E-value: 9.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 263 KLRESEKLLEALQEEKRELKAALQSQENLIHEAR-IQKEKLQEKvKATNTQHAVEA--IRPREESLAEK-KYTSQGQGDL 338
Cdd:PHA02562 175 KIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRkKNGENIARK-QNKYDELVEEAktIKAEIEELTDElLNLVMDIEDP 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462592816 339 DSVLSQLNfthTSEDLLQAEVTCLEGSLE-----SVSATCKQLSQELMEKYEELKrmeAHNNEYKAEIKKLKEQILQGEQ 413
Cdd:PHA02562 254 SAALNKLN---TAAAKIKSKIEQFQKVIKmyekgGVCPTCTQQISEGPDRITKIK---DKLKELQHSLEKLDTAIDELEE 327
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462592816 414 SYSSALEgMKMEISHLTQELHQRDITIASTKGSSsdmeKRLRAEMQKAEDKAVEHKEILDQL-ESLKLENRHLSEMVMK 491
Cdd:PHA02562 328 IMDEFNE-QSKKLLELKNKISTNKQSLITLVDKA----KKVKAAIEELQAEFVDNAEELAKLqDELDKIVKTKSELVKE 401
|
|
| |
