|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
209-451 |
9.15e-32 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 122.42 E-value: 9.15e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 209 ITLEPDRPEVFEQRAEILSPLGRINEAVNDLTKAIQLQPS-ARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAML 287
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDdAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 288 YKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLRGMMLYHHGSL 367
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 368 QEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDPLPGQKASPEYLKVKYLREYSRYLHAHLDTPL 447
Cdd:COG0457 161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240
|
....
gi 2462513562 448 TEYN 451
Cdd:COG0457 241 YQYR 244
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
170-385 |
1.31e-27 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 110.87 E-value: 1.31e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 170 LQEEPDLVSAIYGRGIAYGKKGlhdikNAELALFELSRVITLEPDRPEVFEQRAEILSPLGRINEAVNDLTKAIQLQP-S 248
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLG-----RYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPdD 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 249 ARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYR 328
Cdd:COG0457 76 AEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALE 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462513562 329 ELGNFEAATESFQKAL----LLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNE 385
Cdd:COG0457 156 KLGRYEEALELLEKLEaaalAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTL 216
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
146-386 |
5.84e-27 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 109.82 E-value: 5.84e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 146 ELAIAYVLigSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGLHDiknaeLALFELSRVITLEPDRPEVFEQRAEI 225
Cdd:COG2956 13 FKGLNYLL--NGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYD-----RAIRIHQKLLERDPDRAEALLELAQD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 226 LSPLGRINEAVNDLTKAIQLQP-SARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTFFHRGLLKEAIE 304
Cdd:COG2956 86 YLKAGLLDRAEELLEKLLELDPdDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIE 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 305 SFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYN 384
Cdd:COG2956 166 ALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD 245
|
..
gi 2462513562 385 EV 386
Cdd:COG2956 246 DL 247
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
137-379 |
3.36e-26 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 107.51 E-value: 3.36e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 137 ATDNDSTNEE--LAIAYVLIGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGLHDikNAElALFElsRVITLEPD 214
Cdd:COG2956 34 ALELDPETVEahLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD--RAE-ELLE--KLLELDPD 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 215 RPEVFEQRAEILSPLGRINEAVNDLTKAIQLQP-SARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTF 293
Cdd:COG2956 109 DAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPeNAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELY 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 294 FHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLrGMMLYHHGSLQEALKN 373
Cdd:COG2956 189 LEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLAL-ADLLERKEGLEAALAL 267
|
....*.
gi 2462513562 374 FKRCLQ 379
Cdd:COG2956 268 LERQLR 273
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
149-349 |
1.06e-23 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 99.70 E-value: 1.06e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 149 IAYVLIGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGlhdikNAELALFELSRVITLEPDRPEVFEQRAEILSP 228
Cdd:COG0457 14 LGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLG-----RYEEALADYEQALELDPDDAEALNNLGLALQA 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 229 LGRINEAVNDLTKAIQLQPS-ARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTFFHRGLLKEAIESFK 307
Cdd:COG0457 89 LGRYEEALEDYDKALELDPDdAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLE 168
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 2462513562 308 EALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQN 349
Cdd:COG0457 169 KLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKK 210
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
198-442 |
1.79e-23 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 103.92 E-value: 1.79e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 198 AELALFELSRVITLEPDRPEVFEQRAEILSPLGRINEAVNDLTKAIQLQP-SARLYRHRGTLYFISEDYATAHEDFQQSL 276
Cdd:COG3914 60 LALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPdNAEALFNLGNLLLALGRLEEALAALRRAL 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 277 ELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQL 356
Cdd:COG3914 140 ALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSN 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 357 RGMMLYHHGSLQEALKNFKRCLQLEPYNEVC-----QYMKGLS-------HVAMGQFYE-GIKAQTKVMLNDPLPGQKas 423
Cdd:COG3914 220 LLFALRQACDWEVYDRFEELLAALARGPSELspfalLYLPDDDpaellalARAWAQLVAaAAAPELPPPPNPRDPDRK-- 297
|
250
....*....|....*....
gi 2462513562 424 peyLKVKYLreySRYLHAH 442
Cdd:COG3914 298 ---LRIGYV---SADFRRH 310
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
181-416 |
1.56e-22 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 97.11 E-value: 1.56e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 181 YGRGIAYGKKGlhdikNAELALFELSRVITLEPDRPEVFEQRAEILSPLGRINEAVNDLTKAIQLQP-SARLYRHRGTLY 259
Cdd:COG2956 12 YFKGLNYLLNG-----QPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPdRAEALLELAQDY 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 260 FISEDYATAHEDFQQSLELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATES 339
Cdd:COG2956 87 LKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462513562 340 FQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDP 416
Cdd:COG2956 167 LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP 243
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
249-382 |
8.76e-22 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 91.02 E-value: 8.76e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 249 ARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYR 328
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 2462513562 329 ELGNFEAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEP 382
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
171-344 |
3.75e-20 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 89.20 E-value: 3.75e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 171 QEEPDLVSAIYGRGIAYGKKGLHDiknaeLALFELSRVITLEPDRPEVFEQRAEILSPLGRINEAVNDLTKAIQLQPS-A 249
Cdd:COG4785 67 LALPDLAQLYYERGVAYDSLGDYD-----LAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDyA 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 250 RLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTfFHRGLLKEAIESFKEAlkqkvdfidayksLGQAYRE 329
Cdd:COG4785 142 YAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLA-ERKLDPEKALALLLED-------------WATAYLL 207
|
170
....*....|....*
gi 2462513562 330 LGNFEAATESFQKAL 344
Cdd:COG4785 208 QGDTEEARELFKLAL 222
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
119-418 |
7.18e-20 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 93.22 E-value: 7.18e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 119 EKILSQAKSIAEQkrfpfatdndSTNEELAIAYVLIGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGlhdikNA 198
Cdd:TIGR02917 145 QKSYEQALAIDPR----------SLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLG-----NI 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 199 ELALFELSRVITLEPDRPEVFEQRAEILSPLGRINEAVNDLTKAIQL---QPSARLYRhrGTLYFISEDYATAHEDFQQS 275
Cdd:TIGR02917 210 ELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKapnSPLAHYLK--ALVDFQKKNYEDARETLQDA 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 276 LELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQ 355
Cdd:TIGR02917 288 LKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALS 367
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462513562 356 LRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKA-QTKVMLNDPLP 418
Cdd:TIGR02917 368 LLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADlETAAQLDPELG 431
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
221-350 |
6.07e-19 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 83.32 E-value: 6.07e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 221 QRAEILSPLGRINEAVNDLTKAIQLQP-SARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTFFHRGLL 299
Cdd:COG4783 9 ALAQALLLAGDYDEAEALLEKALELDPdNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDY 88
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 2462513562 300 KEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNH 350
Cdd:COG4783 89 DEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
233-379 |
8.35e-19 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 85.35 E-value: 8.35e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 233 NEAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQ 312
Cdd:COG4785 57 ALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALEL 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 313 KVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLRG-------------------MMLY-HHGSLQEALK 372
Cdd:COG4785 137 DPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYlaerkldpekalallledwATAYlLQGDTEEARE 216
|
....*..
gi 2462513562 373 NFKRCLQ 379
Cdd:COG4785 217 LFKLALA 223
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
220-407 |
2.08e-17 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 85.04 E-value: 2.08e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 220 EQRAEILSPLGRINEAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKgltffhRGLL 299
Cdd:COG3914 21 AAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQA------LGRY 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 300 KEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQ 379
Cdd:COG3914 95 EEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALE 174
|
170 180
....*....|....*....|....*...
gi 2462513562 380 LEPYNEVCQYMKGLSHVAMGQFYEGIKA 407
Cdd:COG3914 175 LDPDNAEALNNLGNALQDLGRLEEAIAA 202
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
137-432 |
6.04e-17 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 83.98 E-value: 6.04e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 137 ATDNDSTNEELAIAYVLIGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGlhDIKNAELalfELSRVITLEPDRP 216
Cdd:TIGR02917 16 ACGDQSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALG--DYAAAEK---ELRKALSLGYPKN 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 217 EVFEQRAEILSPLGRINEAVNDLTKAIQL--QPSARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTFF 294
Cdd:TIGR02917 91 QVLPLLARAYLLQGKFQQVLDELPGKTLLddEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLAL 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 295 HRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNF 374
Cdd:TIGR02917 171 AENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHA 250
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 2462513562 375 KRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMlndplpgqKASPEYLKVKYL 432
Cdd:TIGR02917 251 DALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDAL--------KSAPEYLPALLL 300
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
268-382 |
1.39e-16 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 76.20 E-value: 1.39e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 268 AHEDFQQSLELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLN 347
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100 110
....*....|....*....|....*....|....*
gi 2462513562 348 QNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEP 382
Cdd:COG4235 82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLP 116
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
301-407 |
1.56e-16 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 75.81 E-value: 1.56e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 301 EAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQL 380
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100
....*....|....*....|....*..
gi 2462513562 381 EPYNEVCQYMKGLSHVAMGQFYEGIKA 407
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAA 107
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
234-360 |
2.42e-16 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 75.43 E-value: 2.42e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 234 EAVNDLTKAIQLQP-SARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQ 312
Cdd:COG4235 1 EAIARLRQALAANPnDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2462513562 313 KVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLRGMM 360
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
144-349 |
9.94e-16 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 76.58 E-value: 9.94e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 144 NEELAIAYVLIGS-----GLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGLHdiknaELALFELSRVITLEPDRPEV 218
Cdd:COG0457 38 DPDDAEALYNLGLaylrlGRYEEALADYEQALELDPDDAEALNNLGLALQALGRY-----EEALEDYDKALELDPDDAEA 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 219 FEQRAEILSPLGRINEAVNDLTKAIQLQPS-ARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTFFHRG 297
Cdd:COG0457 113 LYNLGLALLELGRYDEAIEAYERALELDPDdADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAA 192
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2462513562 298 LLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQN 349
Cdd:COG0457 193 AEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYR 244
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
285-416 |
1.28e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 73.69 E-value: 1.28e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 285 AMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLRGMMLYHH 364
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 2462513562 365 GSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDP 416
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
139-311 |
3.11e-14 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 71.87 E-value: 3.11e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 139 DNDSTNEELAIAYVLIG-----SGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGLHDiknaeLALFELSRVITLEP 213
Cdd:COG4785 64 DRALALPDLAQLYYERGvaydsLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYD-----AALEDFDRALELDP 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 214 DRPEVFEQRAEILSPLGRINEAVNDLTKAIQLQPSARlyrhrgtlYFISEDYATAHEDFQQSLELNKNQPIAMLYKgltf 293
Cdd:COG4785 139 DYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDP--------ERALWLYLAERKLDPEKALALLLEDWATAYL---- 206
|
170
....*....|....*...
gi 2462513562 294 fHRGLLKEAIESFKEALK 311
Cdd:COG4785 207 -LQGDTEEARELFKLALA 223
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
159-346 |
4.99e-14 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 74.64 E-value: 4.99e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 159 YDEAIRHFSTMLQE---EPDLVSAIYGRGIAYGKKGLHdiknaELALFELSRVITLEPDRPEVFEQRAEILSPLGRINEA 235
Cdd:TIGR00990 310 YEEAARAFEKALDLgklGEKEAIALNLRGTFKCLKGKH-----LEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKA 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 236 VNDLTKAIQLQPS-ARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKV 314
Cdd:TIGR00990 385 EEDFDKALKLNSEdPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP 464
|
170 180 190
....*....|....*....|....*....|..
gi 2462513562 315 DFIDAYKSLGQAYRELGNFEAATESFQKALLL 346
Cdd:TIGR00990 465 EAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
198-382 |
5.59e-14 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 71.10 E-value: 5.59e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 198 AELALFELSRVITLEPDRPEVFEQRAEILSPLGRINEAVNDLTKAIqlqpsARLYRHRGTLYFISEDYATAHedfqqsle 277
Cdd:COG4785 1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLAL-----ALAAAALAAAALAAERIDRAL-------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 278 LNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLR 357
Cdd:COG4785 68 ALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNR 147
|
170 180
....*....|....*....|....*
gi 2462513562 358 GMMLYHHGSLQEALKNFKRCLQLEP 382
Cdd:COG4785 148 GIALYYLGRYELAIADLEKALELDP 172
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
145-282 |
1.26e-13 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 67.91 E-value: 1.26e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 145 EELAIAYVLIGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGlhdikNAELALFELSRVITLEPDRPEVFEQRAE 224
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLG-----DLDEAIVLLHEALELDPDEPEARLNLGL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 2462513562 225 ILSPLGRINEAVNDLTKAIQLQP-SARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQ 282
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDPeHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
293-382 |
3.46e-13 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 65.19 E-value: 3.46e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 293 FFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAAtESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALK 372
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|
gi 2462513562 373 NFKRCLQLEP 382
Cdd:COG3063 81 YLERALELDP 90
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
161-291 |
8.03e-13 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 65.41 E-value: 8.03e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 161 EAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGlhdikNAELALFELSRVITLEPDRPEVFEQRAEILSPLGRINEAVNDLT 240
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLG-----RYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLE 75
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 2462513562 241 KAIQLQPS-ARLYRHRGTLYFISEDYATAHEDFQQSLELN-KNQPIAMLYKGL 291
Cdd:COG4235 76 RALALDPDnPEALYLLGLAAFQQGDYAEAIAAWQKLLALLpADAPARLLEASI 128
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
196-347 |
1.54e-12 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 65.37 E-value: 1.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 196 KNAELALFELSRVITLEPDRPEVFEQRAEILSPLGRINEAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQS 275
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462513562 276 LELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLN 347
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
120-410 |
1.72e-12 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 70.11 E-value: 1.72e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 120 KILSQAKSIAEQKRfpfatDNDSTNEELAIAYvlIGSGLYDEAIRHFSTMLQEEPDLVSAIYGRG-IAYGKKglhdikNA 198
Cdd:TIGR02917 449 KALAAAKKLEKKQP-----DNASLHNLLGAIY--LGKGDLAKAREAFEKALSIEPDFFPAAANLArIDIQEG------NP 515
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 199 ELALFELSRVITLEPDRPEVFEQRAEILSPLGRINEAVNDLTKAIQLQPSA-RLYRHRGTLYFISEDYATAHEDFQQSLE 277
Cdd:TIGR02917 516 DDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEiEPALALAQYYLGKGQLKKALAILNEAAD 595
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 278 LNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLR 357
Cdd:TIGR02917 596 AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGL 675
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 2462513562 358 GMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTK 410
Cdd:TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRK 728
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
231-382 |
1.03e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 63.06 E-value: 1.03e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 231 RINEAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEAL 310
Cdd:COG5010 2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462513562 311 KQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEP 382
Cdd:COG5010 82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
149-288 |
2.58e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 66.17 E-value: 2.58e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 149 IAYVLIGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGLHDiknAELALFElsRVITLEPDRPEVFEQRAEILSP 228
Cdd:COG3914 118 LGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLE---EAIAALR--RALELDPDNAEALNNLGNALQD 192
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462513562 229 LGRINEAVNDLTKAIQLQPS-ARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQ----PIAMLY 288
Cdd:COG3914 193 LGRLEEAIAAYRRALELDPDnADAHSNLLFALRQACDWEVYDRFEELLAALARGPselsPFALLY 257
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
258-347 |
2.64e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 59.80 E-value: 2.64e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 258 LYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTFFHRGLLKEAIEsFKEALKQKVDFIDAYKSLGQAYRELGNFEAAT 337
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|
gi 2462513562 338 ESFQKALLLN 347
Cdd:COG3063 80 AYLERALELD 89
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
252-379 |
3.19e-11 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 65.78 E-value: 3.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 252 YRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELG 331
Cdd:TIGR00990 334 LNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKG 413
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 2462513562 332 NFEAATESFQKALLLNQNHV-QTLQLrGMMLYHHGSLQEALKNFKRCLQ 379
Cdd:TIGR00990 414 EFAQAGKDYQKSIDLDPDFIfSHIQL-GVTQYKEGSIASSMATFRRCKK 461
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
264-417 |
2.43e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 59.20 E-value: 2.43e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 264 DYATAHEDFQQSLELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKA 343
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462513562 344 LLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDPL 417
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSPL 154
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
149-279 |
1.15e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 59.36 E-value: 1.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 149 IAYVLIGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGlhdikNAELALFELSRVITLEPDRPEVFEQRAEILSP 228
Cdd:COG2956 150 LAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQG-----DYEEAIAALERALEQDPDYLPALPRLAELYEK 224
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 2462513562 229 LGRINEAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELN 279
Cdd:COG2956 225 LGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
137-406 |
1.24e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 60.87 E-value: 1.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 137 ATDNDSTNEELAIAYVLIGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGlhDIKNAELAlFELSRVItlEPDRP 216
Cdd:TIGR02917 425 QLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKG--DLAKAREA-FEKALSI--EPDFF 499
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 217 EVFEQRAEILSPLGRINEAVNDLTKAIQLQP-SARLYRHRGTLYFISEDYATAHEDFQQSLELNkNQPIAmLYKGLTFFH 295
Cdd:TIGR02917 500 PAAANLARIDIQEGNPDDAIQRFEKVLTIDPkNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIE-PALALAQYY 577
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 296 RGL--LKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKN 373
Cdd:TIGR02917 578 LGKgqLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITS 657
|
250 260 270
....*....|....*....|....*....|...
gi 2462513562 374 FKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIK 406
Cdd:TIGR02917 658 LKRALELKPDNTEAQIGLAQLLLAAKRTESAKK 690
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
318-416 |
2.72e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 55.58 E-value: 2.72e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 318 DAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVA 397
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90
....*....|....*....
gi 2462513562 398 MGQFYEGIKAQTKVMLNDP 416
Cdd:COG4783 85 AGDYDEALALLEKALKLDP 103
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
326-416 |
3.46e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 54.02 E-value: 3.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 326 AYRELGNFEAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKnFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGI 405
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|.
gi 2462513562 406 KAQTKVMLNDP 416
Cdd:COG3063 80 AYLERALELDP 90
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
131-247 |
6.67e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 54.43 E-value: 6.67e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 131 QKRFPFATDNDSTNEE--LAIAYVLIGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGLHDiknAELALFElsRV 208
Cdd:COG4783 24 EALLEKALELDPDNPEafALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYD---EALALLE--KA 98
|
90 100 110
....*....|....*....|....*....|....*....
gi 2462513562 209 ITLEPDRPEVFEQRAEILSPLGRINEAVNDLTKAIQLQP 247
Cdd:COG4783 99 LKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
128-247 |
6.72e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 54.97 E-value: 6.72e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 128 IAEQKRFPFATDNDSTNEELAIAYVLIGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGlhdikNAELALFELSR 207
Cdd:COG5010 39 EDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSG-----DKDEAKEYYEK 113
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 2462513562 208 VITLEPDRPEVFEQRAEILSPLGRINEAVNDLTKAIQLQP 247
Cdd:COG5010 114 ALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
242-407 |
9.98e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 57.70 E-value: 9.98e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 242 AIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYK 321
Cdd:COG3914 3 AAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 322 SLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQF 401
Cdd:COG3914 83 LAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRL 162
|
....*.
gi 2462513562 402 YEGIKA 407
Cdd:COG3914 163 EEAIAA 168
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
201-384 |
1.21e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 57.79 E-value: 1.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 201 ALFELSRVITLEPDRPEVFEQRAEILSPLGRINEAVNDLTKAIQLQP-SARLYRHRGTLYFISEDYATAHEDFQQSLELN 279
Cdd:TIGR02917 348 AIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPeNAAARTQLGISKLSQGDPSEAIADLETAAQLD 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 280 KNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLRGM 359
Cdd:TIGR02917 428 PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLAR 507
|
170 180
....*....|....*....|....*
gi 2462513562 360 MLYHHGSLQEALKNFKRCLQLEPYN 384
Cdd:TIGR02917 508 IDIQEGNPDDAIQRFEKVLTIDPKN 532
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
152-250 |
2.12e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 51.71 E-value: 2.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 152 VLIGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGlhDIKNAElalfELSRVITLEPDRPEVFEQRAEILSPLGR 231
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQG--RYDEAI----ALEKALKLDPNNAEALLNLAELLLELGD 74
|
90
....*....|....*....
gi 2462513562 232 INEAVNDLTKAIQLQPSAR 250
Cdd:COG3063 75 YDEALAYLERALELDPSAL 93
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
318-404 |
3.83e-08 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 54.94 E-value: 3.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 318 DAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKglshva 397
Cdd:cd24142 1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEKYLY------ 74
|
....*..
gi 2462513562 398 MGQFYEG 404
Cdd:cd24142 75 LGQLSGG 81
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
259-344 |
8.33e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 50.38 E-value: 8.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 259 YFISEDYATAHEDFQQSLELNKNQPI---AMLYKGLTFFHRGLLKEAIESFKEALKQKVDFI---DAYKSLGQAYRELGN 332
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNSPLapdALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGD 82
|
90
....*....|..
gi 2462513562 333 FEAATESFQKAL 344
Cdd:COG1729 83 YDKARATLEELI 94
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
315-406 |
1.27e-07 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 52.22 E-value: 1.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 315 DFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLS 394
Cdd:COG4785 71 DLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIA 150
|
90
....*....|..
gi 2462513562 395 HVAMGQFYEGIK 406
Cdd:COG4785 151 LYYLGRYELAIA 162
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
159-417 |
1.50e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 54.32 E-value: 1.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 159 YDEAIRHFSTMLQEEPDLVSAIYGRGiaygkKGLHDIKNAELALFELSRVITLEPDRPEVFEQRAEILSPLGRINEAVND 238
Cdd:TIGR02917 651 YAKAITSLKRALELKPDNTEAQIGLA-----QLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQA 725
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 239 LTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFID 318
Cdd:TIGR02917 726 YRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAV 805
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 319 AYKSLGQAYRELGNFEAaTESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYmkglsHVAM 398
Cdd:TIGR02917 806 VLNNLAWLYLELKDPRA-LEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRY-----HLAL 879
|
250
....*....|....*....
gi 2462513562 399 GQFYEGIKAQTKVMLNDPL 417
Cdd:TIGR02917 880 ALLATGRKAEARKELDKLL 898
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
192-279 |
2.71e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 48.63 E-value: 2.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 192 LHDIKNAELALFELSRVITLEPDRPEVFEQRAEILSPLGRINEAVnDLTKAIQLQPS-ARLYRHRGTLYFISEDYATAHE 270
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNnAEALLNLAELLLELGDYDEALA 80
|
....*....
gi 2462513562 271 DFQQSLELN 279
Cdd:COG3063 81 YLERALELD 89
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
199-283 |
4.51e-07 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 51.71 E-value: 4.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 199 ELALFELSRVITLEPDRPEVFEQRAEILSPLGRINEAVNDLTKAIQLQPS-ARLYRHRGTLYFISEDYATAHEDFQQSLE 277
Cdd:PLN03088 19 ALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSlAKAYLRKGTACMKLEEYQTAKAALEKGAS 98
|
....*.
gi 2462513562 278 LNKNQP 283
Cdd:PLN03088 99 LAPGDS 104
|
|
| PRK11189 |
PRK11189 |
lipoprotein NlpI; Provisional |
274-382 |
7.98e-07 |
|
lipoprotein NlpI; Provisional
Pssm-ID: 236875 [Multi-domain] Cd Length: 296 Bit Score: 50.66 E-value: 7.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 274 QSLELNKNQPIAMLY-KGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQ 352
Cdd:PRK11189 54 ASRDLTDEERAQLHYeRGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY 133
|
90 100 110
....*....|....*....|....*....|
gi 2462513562 353 TLQLRGMMLYHHGSLQEALKNFKRCLQLEP 382
Cdd:PRK11189 134 AYLNRGIALYYGGRYELAQDDLLAFYQDDP 163
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
192-280 |
9.47e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 48.80 E-value: 9.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 192 LHDIKNAELALFELSRVITLEPDRPEVFEQRAEILSPLGRINEAVNDLTKAIQLQP-SARLYRHRGTLYFISEDYATAHE 270
Cdd:COG5010 64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPdNPNAYSNLAALLLSLGQDDEAKA 143
|
90
....*....|
gi 2462513562 271 DFQQSLELNK 280
Cdd:COG5010 144 ALQRALGTSP 153
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
216-346 |
3.10e-06 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 49.14 E-value: 3.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 216 PEVFEQRAEILSPLGRINEAVNDLTKAIQLQPSARLYRHRGTLyfISEDYATAHEDFQQSLELNKNQPIAMLYKGLTFFH 295
Cdd:COG3071 193 PELAAAYARALIALGDHDEAERLLREALKRQWDPRLVRLYGRL--QGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLR 270
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 2462513562 296 RGLLKEAIESFKEALKQKVDfIDAYKSLGQAYRELGNFEAATESFQKALLL 346
Cdd:COG3071 271 NQLWGKAREYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKALAL 320
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
317-350 |
4.46e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 43.18 E-value: 4.46e-06
10 20 30
....*....|....*....|....*....|....
gi 2462513562 317 IDAYKSLGQAYRELGNFEAATESFQKALLLNQNH 350
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
261-406 |
6.09e-06 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 48.83 E-value: 6.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 261 ISEDYATAHEDFQQSLELNKNQPiamlYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAY-------RELGNF 333
Cdd:TIGR00990 306 ADESYEEAARAFEKALDLGKLGE----KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYikrasmnLELGDP 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 334 EAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYN-------EVCQYMKGLSHVAMGQFYEGIK 406
Cdd:TIGR00990 382 DKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFifshiqlGVTQYKEGSIASSMATFRRCKK 461
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
317-350 |
9.24e-06 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 42.43 E-value: 9.24e-06
10 20 30
....*....|....*....|....*....|....
gi 2462513562 317 IDAYKSLGQAYRELGNFEAATESFQKALLLNQNH 350
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
146-247 |
1.17e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.00 E-value: 1.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 146 ELAIAYVLigSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGlhdikNAELALFELSRVITLEPDRPEVFEQRAEI 225
Cdd:COG4235 22 LLGRAYLR--LGRYDEALAAYEKALRLDPDNADALLDLAEALLAAG-----DTEEAEELLERALALDPDNPEALYLLGLA 94
|
90 100
....*....|....*....|..
gi 2462513562 226 LSPLGRINEAVNDLTKAIQLQP 247
Cdd:COG4235 95 AFQQGDYAEAIAAWQKLLALLP 116
|
|
| PRK09782 |
PRK09782 |
bacteriophage N4 receptor, outer membrane subunit; Provisional |
230-376 |
5.16e-05 |
|
bacteriophage N4 receptor, outer membrane subunit; Provisional
Pssm-ID: 236624 [Multi-domain] Cd Length: 987 Bit Score: 46.06 E-value: 5.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 230 GRINEAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEA 309
Cdd:PRK09782 590 GQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERA 669
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 310 LKqkvDFIDAY---KSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLrgmmlyhHGSLQEALKNFKR 376
Cdd:PRK09782 670 HK---GLPDDPaliRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPL-------TPEQNQQRFNFRR 729
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
186-382 |
1.90e-04 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 44.20 E-value: 1.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 186 AYGKKGLHDiknaelALFELSRVITLEPDrPEVFEQRAEILSPLGRINEAVNDLTKAIQLQPS-ARLYRHRGTLYFISED 264
Cdd:TIGR00990 137 AYRNKDFNK------AIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDySKALNRRANAYDGLGK 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 265 YATAHEDFQQSL---ELNKNQPIAMLYKGLTFFHRGLLKEAIE-------------SFKEALKQKVDFiDAYKSLGQAYR 328
Cdd:TIGR00990 210 YADALLDLTASCiidGFRNEQSAQAVERLLKKFAESKAKEILEtkpenlpsvtfvgNYLQSFRPKPRP-AGLEDSNELDE 288
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462513562 329 ELGN-----------------FEAATESFQKALLLN---QNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEP 382
Cdd:TIGR00990 289 ETGNgqlqlglkspeskadesYEEAARAFEKALDLGklgEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP 362
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
290-331 |
2.02e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 38.61 E-value: 2.02e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 2462513562 290 GLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELG 331
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
293-382 |
2.62e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 40.36 E-value: 2.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 293 FFHRGLLKEAIESFKEALKQKVD---FIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQT---LQLRGMMLYHHGS 366
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKApdaLLKLGLSYLELGD 82
|
90
....*....|....*.
gi 2462513562 367 LQEALKNFKRCLQLEP 382
Cdd:COG1729 83 YDKARATLEELIKKYP 98
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
315-380 |
2.66e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 39.68 E-value: 2.66e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462513562 315 DFIDAYKSLGQAYRELGNFEAATESFQKALLLNQ--------NHVQTLQLRGMMLYHHGSLQEALKNFKRCLQL 380
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARrllgpdhpLTATTLLNLGRLYLELGRYEEALELLERALAL 74
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
284-344 |
2.66e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 39.68 E-value: 2.66e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462513562 284 IAMLYKGLTFFHRGLLKEAIESFKEAL--------KQKVDFIDAYKSLGQAYRELGNFEAATESFQKAL 344
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALeiarrllgPDHPLTATTLLNLGRLYLELGRYEEALELLERAL 72
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
197-249 |
2.72e-04 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 43.00 E-value: 2.72e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 2462513562 197 NAELALFELSRVITLEPDRPEVFEQRAEILSPLGRINEAVNDLTKAIQLQPSA 249
Cdd:cd24142 15 NFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG 67
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
255-312 |
3.12e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 39.24 E-value: 3.12e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462513562 255 RGTLYFISEDYATAHEDFQQSLELNKNQP---IAMLYKGLTFFHRGLLKEAIESFKEALKQ 312
Cdd:pfam13432 3 LARAALRAGDYDDAAAALEAALARFPESPdaaAALLLLGLAALRQGRLAEAAAAYRAALRA 63
|
|
| tol_pal_ybgF |
TIGR02795 |
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ... |
250-342 |
3.13e-04 |
|
tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Pssm-ID: 188247 [Multi-domain] Cd Length: 117 Bit Score: 40.34 E-value: 3.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 250 RLYRHRGTLYFISEDYATAHEDFQQSLELNKN---QPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFI---DAYKSL 323
Cdd:TIGR02795 1 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKstyAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPkapDALLKL 80
|
90
....*....|....*....
gi 2462513562 324 GQAYRELGNFEAATESFQK 342
Cdd:TIGR02795 81 GMSLQELGDKEKAKATLQQ 99
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
146-249 |
5.00e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 42.76 E-value: 5.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 146 ELAIAYVLIGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKglhdiKNAElALFELSRVITLEPDRPEVFEQRAEI 225
Cdd:TIGR02917 773 RTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLEL-----KDPR-ALEYAERALKLAPNIPAILDTLGWL 846
|
90 100
....*....|....*....|....
gi 2462513562 226 LSPLGRINEAVNDLTKAIQLQPSA 249
Cdd:TIGR02917 847 LVEKGEADRALPLLRKAVNIAPEA 870
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
230-312 |
7.45e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.20 E-value: 7.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 230 GRINEAVNDLTKAIQLQPSARL----YRHRGTLYFISEDYATAHEDFQQSLELNKN---QPIAMLYKGLTFFHRGLLKEA 302
Cdd:COG1729 7 GDYDEAIAAFKAFLKRYPNSPLapdaLYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYDKA 86
|
90
....*....|
gi 2462513562 303 IESFKEALKQ 312
Cdd:COG1729 87 RATLEELIKK 96
|
|
| PRK11189 |
PRK11189 |
lipoprotein NlpI; Provisional |
220-323 |
8.15e-04 |
|
lipoprotein NlpI; Provisional
Pssm-ID: 236875 [Multi-domain] Cd Length: 296 Bit Score: 41.41 E-value: 8.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 220 EQRAEILSPLGRINEAV-------NDLTKAIQLQPS-ARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGL 291
Cdd:PRK11189 61 EERAQLHYERGVLYDSLglralarNDFSQALALRPDmADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGI 140
|
90 100 110
....*....|....*....|....*....|..
gi 2462513562 292 TFFHRGLLKEAIESFKEALKQKVDfiDAYKSL 323
Cdd:PRK11189 141 ALYYGGRYELAQDDLLAFYQDDPN--DPYRAL 170
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
318-349 |
1.39e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 36.35 E-value: 1.39e-03
10 20 30
....*....|....*....|....*....|..
gi 2462513562 318 DAYKSLGQAYRELGNFEAATESFQKALLLNQN 349
Cdd:pfam07719 2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
222-380 |
2.04e-03 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 40.37 E-value: 2.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 222 RAEILSPLGRINEAVNDLTKAIQLQPSARLYrHR-------GTLYFISEDYATAHEDFQQSLELNKNQPI------AMLY 288
Cdd:pfam17874 7 RAQLAISKGDAERALELAEQALALLPEDDLL-ARglatfvlGEAYLCLGDLDAALQAMREAEALARRADSphvtlwALLQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 289 KGLTFFHRGLLKEAIESFKEALK------QKVDFI--DAYKSLGQAYRELGNFEAATESFQKALLLNQNH--VQTLQLRG 358
Cdd:pfam17874 86 QGEILRAQGRLHQALETYQQALQlardhgLQHLPLhgFLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWepDAAVDAYV 165
|
170 180
....*....|....*....|....*
gi 2462513562 359 MMLYHH---GSLQEALKNFKRCLQL 380
Cdd:pfam17874 166 LLARIAlaqGELEEALTLLRRAELL 190
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
198-371 |
3.39e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 40.23 E-value: 3.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 198 AELALfELSRVITLEPDRPEVFEQRAEILSPLGRINEAVNDLTKAIQLQ--------------PSARLYRHRGTLYFisE 263
Cdd:COG3899 728 LERAL-ELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAARalaalaalrhgnppASARAYANLGLLLL--G 804
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 264 DYATAHEDFQQSLELNK------NQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGnfEAAT 337
Cdd:COG3899 805 DYEEAYEFGELALALAErlgdrrLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAAA--AAAA 882
|
170 180 190
....*....|....*....|....*....|....
gi 2462513562 338 ESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEAL 371
Cdd:COG3899 883 AAALAAAAAAAARLLAAAAAALAAAAAAAALAAA 916
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
146-264 |
3.51e-03 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 39.98 E-value: 3.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 146 ELAIAYVLIGS-----GLYDEAIRHFSTMLQEEPDLVSAIYGRGIAygkkgLHDIKNAELALFELSRVITLEPDRPEVFE 220
Cdd:COG3914 144 DFAEAYLNLGEalrrlGRLEEAIAALRRALELDPDNAEALNNLGNA-----LQDLGRLEEAIAAYRRALELDPDNADAHS 218
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 2462513562 221 QRAEILSPLGRINEAVNDLTKAIQLQPSARLYRHRGTLYFISED 264
Cdd:COG3914 219 NLLFALRQACDWEVYDRFEELLAALARGPSELSPFALLYLPDDD 262
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
249-311 |
3.99e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 36.21 E-value: 3.99e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462513562 249 ARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQP--------IAMLYKGLTFFHRGLLKEAIESFKEALK 311
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLLgpdhpltaTTLLNLGRLYLELGRYEEALELLERALA 73
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
278-401 |
5.92e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 38.36 E-value: 5.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462513562 278 LNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLlNQNHVQTLQLR 357
Cdd:COG4785 1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALA-LPDLAQLYYER 79
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 2462513562 358 GMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQF 401
Cdd:COG4785 80 GVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDY 123
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
300-350 |
7.25e-03 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 38.38 E-value: 7.25e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 2462513562 300 KEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNH 350
Cdd:cd24142 17 ELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG 67
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
323-349 |
8.18e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 33.91 E-value: 8.18e-03
10 20
....*....|....*....|....*..
gi 2462513562 323 LGQAYRELGNFEAATESFQKALLLNQN 349
Cdd:pfam13181 7 LGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
249-281 |
9.06e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 33.93 E-value: 9.06e-03
10 20 30
....*....|....*....|....*....|...
gi 2462513562 249 ARLYRHRGTLYFISEDYATAHEDFQQSLELNKN 281
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
299-357 |
9.78e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 34.87 E-value: 9.78e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 2462513562 299 LKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLR 357
Cdd:pfam14559 4 YAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALL 62
|
|
| |
