|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
512-1241 |
2.99e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 87.80 E-value: 2.99e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 512 QYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESE--------------MTKKC 577
Cdd:TIGR02168 243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQkqilrerlanlerqLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 578 SQLLTLEKQLEEKIVAYSSIAAKNAELEQEL-MLEAQLEKKDQQFKEQEKTMSMLQQDIICK--------------QHHL 642
Cdd:TIGR02168 323 AQLEELESKLDELAEELAELEEKLEELKEELeSLEAELEELEAELEELESRLEELEEQLETLrskvaqlelqiaslNNEI 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 643 ESLDRLLTESKGEMKKENMKKDEALKALQNQVSEEtikVRQLDSALEICKEELVLHLNQLEGNKEKFEKQLKKKSEEVYC 722
Cdd:TIGR02168 403 ERLEARLERLEDRRERLQQEIEELLKKLEEAELKE---LQAELEELEEELEELQEELERLEEALEELREELEEAEQALDA 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 723 LQKELKIKN------HSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSK-LEQELQKQRESSAEKLR 795
Cdd:TIGR02168 480 AERELAQLQarldslERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAaLGGRLQAVVVENLNAAK 559
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 796 K----MEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMIldQTKTEL 871
Cdd:TIGR02168 560 KaiafLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDL--DNALEL 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 872 EKKTN---------------------AVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKA 930
Cdd:TIGR02168 638 AKKLRpgyrivtldgdlvrpggvitgGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQL 717
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 931 QLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLdmtiREHRGEMEQKIIKLEGTLEK 1010
Cdd:TIGR02168 718 RKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA----EEELAEAEAEIEELEAQIEQ 793
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1011 SELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQ 1090
Cdd:TIGR02168 794 LKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES 873
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1091 ELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVREAHLEARmqaeikkls 1170
Cdd:TIGR02168 874 ELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQER--------- 944
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462508639 1171 aevesLKEAYHMEMISHQENHAKWKISADSQKSSVQQLNEQLEK-------AKLELEEAQDTVSNLHQQVQDRNEVIE 1241
Cdd:TIGR02168 945 -----LSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKElgpvnlaAIEEYEELKERYDFLTAQKEDLTEAKE 1017
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
585-1247 |
4.52e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 83.95 E-value: 4.52e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 585 KQLEEKIVAYSSIAAKNAELEQELmlEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTEskgeMKKENMKKD 664
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEEL--TAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISR----LEQQKQILR 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 665 EALKALQNQVSEETIKVRQLDSALEICKEELVL---HLNQLEGNKEKFEKQLKKKSEEvyclQKELKIKNHSLQETSEQN 741
Cdd:TIGR02168 309 ERLANLERQLEELEAQLEELESKLDELAEELAEleeKLEELKEELESLEAELEELEAE----LEELESRLEELEEQLETL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 742 VILQHTLQQQQQMLQQETIRNGE----LEDTQTKLEKQVSKLEQELQK-QRESSAEKLRKMEEKCESAAHEADLKRQKVI 816
Cdd:TIGR02168 385 RSKVAQLELQIASLNNEIERLEArlerLEDRRERLQQEIEELLKKLEEaELKELQAELEELEEELEELQEELERLEEALE 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 817 ELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKaMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEAL 896
Cdd:TIGR02168 465 ELREELEEAEQALDAAERELAQLQARLDSLERLQENL-EGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAAL 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 897 QKR-EVLETELQNAHGELKSTLRQLQELR-----------DVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELL- 963
Cdd:TIGR02168 544 GGRlQAVVVENLNAAKKAIAFLKQNELGRvtflpldsikgTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLg 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 964 ------EMDQALKERNwELKQRAAQVTHLDMTIREH-------------RGEMEQKIIKLEGTLEKSELELKECNKQIES 1024
Cdd:TIGR02168 624 gvlvvdDLDNALELAK-KLRPGYRIVTLDGDLVRPGgvitggsaktnssILERRREIEELEEKIEELEEKIAELEKALAE 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1025 LNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMesvmkeqEQYIATQYKEAIDLGQELRLTREQVQNSHT 1104
Cdd:TIGR02168 703 LRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL-------EERIAQLSKELTELEAEIEELEERLEEAEE 775
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1105 ELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVREAHLEARM----------QAEIKKLSAEVE 1174
Cdd:TIGR02168 776 ELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIaaterrledlEEQIEELSEDIE 855
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462508639 1175 SLKEayhmEMISHQENHAKWKISADSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEAL 1247
Cdd:TIGR02168 856 SLAA----EIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKL 924
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
870-1160 |
2.81e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.14 E-value: 2.81e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 870 ELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEkyttikdLTAELR 949
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYE-------LLAELA 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 950 ECKMEIEDKKQELLEMDQALKERNWELKQraaqvthldmtIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKL 1029
Cdd:COG1196 299 RLEQDIARLEERRRELEERLEELEEELAE-----------LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1030 QNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEA 1109
Cdd:COG1196 368 LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA 447
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 2462508639 1110 RHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVREAHLEA 1160
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE 498
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
864-1254 |
2.39e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.17 E-value: 2.39e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 864 LDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREvLETELQNAHGELksTLRQLQELRDVLQKAQLSLEEKYTTIKD 943
Cdd:TIGR02168 181 LERTRENLDRLEDILNELERQLKSLERQAEKAERYKE-LKAELRELELAL--LVLRLEELREELEELQEELKEAEEELEE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 944 LTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQkiiklegtlekselelkeCNKQIE 1023
Cdd:TIGR02168 258 LTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN------------------LERQLE 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1024 SLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQykeaidlgqelrltREQVQNSH 1103
Cdd:TIGR02168 320 ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEEL--------------EEQLETLR 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1104 TELAEARHQQVQAQREIERLSSELEDMkqlskeKDAHGNHLAEelgaskvREAHLEARMQAEIKKLSAEVESLKEAYHme 1183
Cdd:TIGR02168 386 SKVAQLELQIASLNNEIERLEARLERL------EDRRERLQQE-------IEELLKKLEEAELKELQAELEELEEELE-- 450
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462508639 1184 mishqenhakwkiSADSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLTKGENV 1254
Cdd:TIGR02168 451 -------------ELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGV 508
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
112-848 |
2.47e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.17 E-value: 2.47e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 112 EIKSLREKLNKLRQQNACLVTQNHSLMTKFESIHFELTQSRAKVSMLESAQQQA--------ASVPILEEQIINLEAEVS 183
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELqkelyalaNEISRLEQQKQILRERLA 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 184 AQDKVLREAENKLEQSQKMVIEKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNEALYNAEELSKAFQQYKKKVAEKL 263
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 264 EKVQAEEEILERNltncekenkrlqercglyKSELEILKEKLRQLKEENNNGKEKLRIMAVKtsEVMAQLTESRQSILKL 343
Cdd:TIGR02168 393 LQIASLNNEIERL------------------EARLERLEDRRERLQQEIEELLKKLEEAELK--ELQAELEELEEELEEL 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 344 ESELENKDEILRDKFSLMNENRELKVRVAAQNERLDLCQQEIESSRVELRSLEKIISQLPLKRELF-GFKSYLSkyQMSS 422
Cdd:TIGR02168 453 QEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLsGILGVLS--ELIS 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 423 FSNKEDRCIgccEA------NKLVISDLriKLAIKEAEIQKLHANLTANQLSQSLITCNDSQESSKLSSLETEPVKLGGH 496
Cdd:TIGR02168 531 VDEGYEAAI---EAalggrlQAVVVENL--NAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAK 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 497 QVESVKDQNQHTMN------------------KQYEKERQRLVT--------------GIEELRTKLIQIEAENSDLKVN 544
Cdd:TIGR02168 606 DLVKFDPKLRKALSyllggvlvvddldnalelAKKLRPGYRIVTldgdlvrpggvitgGSAKTNSSILERRREIEELEEK 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 545 MAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQEL-MLEAQLEKKDQQFKE 623
Cdd:TIGR02168 686 IEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIaQLSKELTELEAEIEE 765
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 624 QEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKEnmkkDEALKALQNQVSEETIKVRQLDSALEICKEELVLHLNQLe 703
Cdd:TIGR02168 766 LEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAL----REALDELRAELTLLNEEAANLRERLESLERRIAATERRL- 840
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 704 gnkEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQEL 783
Cdd:TIGR02168 841 ---EDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRREL 917
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462508639 784 QKQRessaEKLRKMEEKCESAaheadlkRQKVIELTGTAR-QVKIEMDQYKEELSKMEKEIMHLKR 848
Cdd:TIGR02168 918 EELR----EKLAQLELRLEGL-------EVRIDNLQERLSeEYSLTLEEAEALENKIEDDEEEARR 972
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
764-1139 |
3.14e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.67 E-value: 3.14e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 764 ELEDTQTKLEKqVSKLEQELQKQRESsaeklrkmeekcesaaheadLKRQKvieltGTARQVKiemdQYKEELSKMEKEI 843
Cdd:COG1196 180 KLEATEENLER-LEDILGELERQLEP--------------------LERQA-----EKAERYR----ELKEELKELEAEL 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 844 MHLKRDgenkamhlsQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQEL 923
Cdd:COG1196 230 LLLKLR---------ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARL 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 924 RDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQvthldmtirehRGEMEQKIIK 1003
Cdd:COG1196 301 EQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAE-----------LAEAEEALLE 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1004 LEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYK 1083
Cdd:COG1196 370 AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE 449
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462508639 1084 EAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDA 1139
Cdd:COG1196 450 EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEG 505
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
441-1123 |
3.62e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.79 E-value: 3.62e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 441 ISDLRIKLAIKEAEIQKLHANLTANQLSQSLITCNDSQESSKLSSLETEPVKLgghQVESVKDQNQhtmNKQYEKERQRL 520
Cdd:TIGR02168 269 LEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEEL---EAQLEELESK---LDELAEELAEL 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 521 VTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLE------EKIVAY 594
Cdd:TIGR02168 343 EEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLErledrrERLQQE 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 595 SSIAAKNAELEQELMLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDeALKALQNQV 674
Cdd:TIGR02168 423 IEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLD-SLERLQENL 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 675 SEETIKVRQL--------------------DSALEICKEE-LVLHLNQLEGNKEKFEKQ---LKKKSEEVYCLQKELKIK 730
Cdd:TIGR02168 502 EGFSEGVKALlknqsglsgilgvlselisvDEGYEAAIEAaLGGRLQAVVVENLNAAKKaiaFLKQNELGRVTFLPLDSI 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 731 NHSLQETSEQNVILQHTLQQQQQMLQQETIRNGEL------------EDTQTKLEKQVSK--------LEQELQKQRESS 790
Cdd:TIGR02168 582 KGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKalsyllggvlvvDDLDNALELAKKLrpgyrivtLDGDLVRPGGVI 661
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 791 AEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGEnkamhlsQLDMILDQTKTE 870
Cdd:TIGR02168 662 TGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELE-------ELSRQISALRKD 734
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 871 LEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRE 950
Cdd:TIGR02168 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTL 814
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 951 CKMEIEDKKQELLEMDQ---ALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLND 1027
Cdd:TIGR02168 815 LNEEAANLRERLESLERriaATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRS 894
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1028 KLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREqvqnshTELA 1107
Cdd:TIGR02168 895 ELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIE------DDEE 968
|
730
....*....|....*.
gi 2462508639 1108 EARHQQVQAQREIERL 1123
Cdd:TIGR02168 969 EARRRLKRLENKIKEL 984
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
967-1250 |
2.20e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.97 E-value: 2.20e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 967 QALKErnwELKQRAAQVTHLDM-TIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQ 1045
Cdd:COG1196 216 RELKE---ELKELEAELLLLKLrELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYE 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1046 NEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSS 1125
Cdd:COG1196 293 LLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1126 ELEDMKQLSKEKDAHGNHLAEELGASKVREAHLEARMQAEIKKLsAEVESLKEAYHMEMISHQENHAKWKISADSQKSSV 1205
Cdd:COG1196 373 ELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERL-ERLEEELEELEEALAELEEEEEEEEEALEEAAEEE 451
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 2462508639 1206 QQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLTK 1250
Cdd:COG1196 452 AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLL 496
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
292-1074 |
1.65e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.40 E-value: 1.65e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 292 GLYKSELEILKEKLRQLKEENNNGKEKLRIMAVKTSEVMAQLTESRQSILKLESELENKDEILrdkFSLMNENRELKVRV 371
Cdd:TIGR02168 228 ALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL---YALANEISRLEQQK 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 372 AAQNERLDLCQQEIESsrvelrsLEKIISQLPLKRELFGFKSYLSKYQMSSFSNKEDRCIGCCEANKLVISDLRIKLAIK 451
Cdd:TIGR02168 305 QILRERLANLERQLEE-------LEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEEL 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 452 EAEIQKLHANLTANQLSQSLITCNDSQESSKLSSLEtepvklggHQVESVKDQNQHTMNKQYEKERQRLVTGIEELRTKL 531
Cdd:TIGR02168 378 EEQLETLRSKVAQLELQIASLNNEIERLEARLERLE--------DRRERLQQEIEELLKKLEEAELKELQAELEELEEEL 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 532 IQIEAENSDLKVNMAHRTSQFQLIQEELLekasnssKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQ----- 606
Cdd:TIGR02168 450 EELQEELERLEEALEELREELEEAEQALD-------AAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGlsgil 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 607 -------------ELMLEAQLE--------------KKDQQFKEQEKT--MSMLQQDIICKQHHLESLDRLLTESKGEMK 657
Cdd:TIGR02168 523 gvlselisvdegyEAAIEAALGgrlqavvvenlnaaKKAIAFLKQNELgrVTFLPLDSIKGTEIQGNDREILKNIEGFLG 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 658 --KENMKKDEALKALQNQVSEETIKVRQLDSALEICKE------------ELVL------------HLNQLEGNKE--KF 709
Cdd:TIGR02168 603 vaKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKlrpgyrivtldgDLVRpggvitggsaktNSSILERRREieEL 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 710 EKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRES 789
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE 762
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 790 sAEKLRKMEEKCESAAHEADLKRQkviELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKT 869
Cdd:TIGR02168 763 -IEELEERLEEAEEELAEAEAEIE---ELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATER 838
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 870 ELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELR 949
Cdd:TIGR02168 839 RLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELE 918
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 950 ECKMEIEDKKQELLEMDQALKernwELKQRAAQVTHLDMtirehrGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKL 1029
Cdd:TIGR02168 919 ELREKLAQLELRLEGLEVRID----NLQERLSEEYSLTL------EEAEALENKIEDDEEEARRRLKRLENKIKELGPVN 988
|
810 820 830 840
....*....|....*....|....*....|....*....|....*....
gi 2462508639 1030 QNAKEQLRE----KEFImlqnEQEISQLKKEIERTQQRMKEMESVMKEQ 1074
Cdd:TIGR02168 989 LAAIEEYEElkerYDFL----TAQKEDLTEAKETLEEAIEEIDREARER 1033
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
870-1241 |
1.20e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 66.24 E-value: 1.20e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 870 ELEKKTNAVKELEKLQHSTETELTEALQKREVLETElqnahgelKSTLRQLQELRDVLQKAQLSleEKYTTIKDLTAELR 949
Cdd:TIGR02169 171 KKEKALEELEEVEENIERLDLIIDEKRQQLERLRRE--------REKAERYQALLKEKREYEGY--ELLKEKEALERQKE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 950 ECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREhrgEMEQKIIKLEGTLEKSELELKECNKQIESLNDKL 1029
Cdd:TIGR02169 241 AIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKD---LGEEEQLRVKEKIGELEAEIASLERSIAEKEREL 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1030 QNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESvmkeqeqyiatqykEAIDLGQELRLTREQVQNSHTELAEA 1109
Cdd:TIGR02169 318 EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTE--------------EYAELKEELEDLRAELEEVDKEFAET 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1110 RHQQVQAQREIERLSSELEDMK-------QLSKEKDAHGNHLAEELGASKVREAHLEARM---QAEIKKLSAEVESLKEa 1179
Cdd:TIGR02169 384 RDELKDYREKLEKLKREINELKreldrlqEELQRLSEELADLNAAIAGIEAKINELEEEKedkALEIKKQEWKLEQLAA- 462
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462508639 1180 yhmemishQENHAKWKISADSQKssVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIE 1241
Cdd:TIGR02169 463 --------DLSKYEQELYDLKEE--YDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEE 514
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
693-1221 |
2.42e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.34 E-value: 2.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 693 EELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKL 772
Cdd:COG1196 249 EELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAEL 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 773 EKQVSKLEQELQKQRESSAEKlrkmEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGEN 852
Cdd:COG1196 329 EEELEELEEELEELEEELEEA----EEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 853 KAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQL 932
Cdd:COG1196 405 LEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLE 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 933 SLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALK------ERNWELKQRAAQVTHLDmtirehrGEMEQKIIKLEG 1006
Cdd:COG1196 485 ELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLagavavLIGVEAAYEAALEAALA-------AALQNIVVEDDE 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1007 TLEKSELELKECNK---------QIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQY 1077
Cdd:COG1196 558 VAAAAIEYLKAAKAgratflpldKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALR 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1078 IATQYKEAIdlgQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVREAH 1157
Cdd:COG1196 638 RAVTLAGRL---REVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEE 714
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462508639 1158 LEARMQAEIKKLSAEVESLKEAYHMEMISHQENHAKWKISADSQKSSVQQLNEQLEKAKLELEE 1221
Cdd:COG1196 715 ERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
667-1225 |
3.49e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.57 E-value: 3.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 667 LKALQNQvSEETIKVRQLDSALEICK-EELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQnvilq 745
Cdd:COG1196 202 LEPLERQ-AEKAERYRELKEELKELEaELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLE----- 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 746 htlqqqqqmLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEkcesAAHEADLKRQKVIELTGTARQV 825
Cdd:COG1196 276 ---------LEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEE----LEEELAELEEELEELEEELEEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 826 KIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETE 905
Cdd:COG1196 343 EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEE 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 906 LQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECK---MEIEDKKQELLEMDQALKERNWELKQRAAQ 982
Cdd:COG1196 423 LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLeeaALLEAALAELLEELAEAAARLLLLLEAEAD 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 983 VTHLDMTIREHRGEMEQKIIKLEGTL----EKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIE 1058
Cdd:COG1196 503 YEGFLEGVKAALLLAGLRGLAGAVAVligvEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKI 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1059 RTQQRMKEMESVMKEQEQYIATQYkEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKD 1138
Cdd:COG1196 583 RARAALAAALARGAIGAAVDLVAS-DLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGS 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1139 AHGNHLAEELGASKVREAHLEARMQAEIKKLSAEVESLKEAYHMEMISHQENHAKWKISADSQKSSVQQLNEQLEKAKLE 1218
Cdd:COG1196 662 LTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEEL 741
|
....*..
gi 2462508639 1219 LEEAQDT 1225
Cdd:COG1196 742 LEEEELL 748
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
179-1077 |
7.04e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.55 E-value: 7.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 179 EAEVSAQDKVLREAENKLEQSQKMVIEKEQSLQESKEEciklkvdLLEQTKQGKRAERQRNEAlynAEELSKAFQQYKKK 258
Cdd:TIGR02169 222 EYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEE-------ISELEKRLEEIEQLLEEL---NKKIKDLGEEEQLR 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 259 VAEKLEKVQAEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKLRQLKEEnnngkekLRIMAVKTSEVMAQLTESRQ 338
Cdd:TIGR02169 292 VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELERE-------IEEERKRRDKLTEEYAELKE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 339 SILKLESELENKDEilrdkfslmnENRELKVRVAAQNERLDLCQQEIESSRVELRSLEKIISQLPLKRElfgfksylsky 418
Cdd:TIGR02169 365 ELEDLRAELEEVDK----------EFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELA----------- 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 419 qmssfsnkedrcigcceanklvisDLRIKLAIKEAEIQKLHANLTANQLSQSLITCNDSQESSKLSSLETEpvklgghqv 498
Cdd:TIGR02169 424 ------------------------DLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQE--------- 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 499 esvkdqnqhtmnkqyekerqrlvtgIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCS 578
Cdd:TIGR02169 471 -------------------------LYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHG 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 579 QLLTLEKQLEEKIVAYSSIA---AKNAELEQELMLEAQLEkkdqqFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGE 655
Cdd:TIGR02169 526 TVAQLGSVGERYATAIEVAAgnrLNNVVVEDDAVAKEAIE-----LLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIG 600
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 656 MKKENMKKDEALKALQNQVSEETIKVRQLDSALEICKEelvLHLNQLEGNkekfekqlkkkseevyCLQKELKIKNHSLQ 735
Cdd:TIGR02169 601 FAVDLVEFDPKYEPAFKYVFGDTLVVEDIEAARRLMGK---YRMVTLEGE----------------LFEKSGAMTGGSRA 661
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 736 ETSEQNVILQHTLQqqqqmlqqetirngeledtqtklEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKV 815
Cdd:TIGR02169 662 PRGGILFSRSEPAE-----------------------LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKI 718
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 816 IELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELE-KLQHSTETELTE 894
Cdd:TIGR02169 719 GEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEaRLSHSRIPEIQA 798
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 895 ALQKrevLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNW 974
Cdd:TIGR02169 799 ELSK---LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEA 875
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 975 ELKQRAAQVTHLDMTIREHR---GEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMlQNEQEIS 1051
Cdd:TIGR02169 876 ALRDLESRLGDLKKERDELEaqlRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIP-EEELSLE 954
|
890 900
....*....|....*....|....*..
gi 2462508639 1052 QLKKEIERTQQRMKEMESV-MKEQEQY 1077
Cdd:TIGR02169 955 DVQAELQRVEEEIRALEPVnMLAIQEY 981
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
511-1057 |
1.73e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 62.39 E-value: 1.73e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 511 KQYEKERQRLVTGIEELRTKLIQIEAENSDLKvnmaHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEK 590
Cdd:PRK03918 196 KEKEKELEEVLREINEISSELPELREELEKLE----KEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEEL 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 591 IVAYSSIAAKNAEL-------EQELMLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRL------LTESKGEMK 657
Cdd:PRK03918 272 KKEIEELEEKVKELkelkekaEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKeerleeLKKKLKELE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 658 KENMKKDEALKALQNQVSEETIKVRQLDSALEICKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQET 737
Cdd:PRK03918 352 KRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEEL 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 738 SEQNVILQHTLQQQQQMLQQETIRN------------GELEDTQTKLEKQVSKLEQELQKQRESSaeKLRKMEEKCESAa 805
Cdd:PRK03918 432 KKAKGKCPVCGRELTEEHRKELLEEytaelkriekelKEIEEKERKLRKELRELEKVLKKESELI--KLKELAEQLKEL- 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 806 hEADLKRQKVIELTGTARqvkiEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQ 885
Cdd:PRK03918 509 -EEKLKKYNLEELEKKAE----EYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELG 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 886 HSTETELTEALQKREvletELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEM 965
Cdd:PRK03918 584 FESVEELEERLKELE----PFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEE 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 966 DQA-LKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSElELKECNKQIESLNDKLQNAKEQLRE-KEFIM 1043
Cdd:PRK03918 660 EYEeLREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEERE-KAKKELEKLEKALERVEELREKVKKyKALLK 738
|
570
....*....|....
gi 2462508639 1044 LQNEQEISQLKKEI 1057
Cdd:PRK03918 739 ERALSKVGEIASEI 752
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
511-1074 |
1.79e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.26 E-value: 1.79e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 511 KQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEmtkkcsqLLTLEKQLEEK 590
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE-------LARLEQDIARL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 591 IVAYSSIAAKNAELEQELM-LEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEALKA 669
Cdd:COG1196 308 EERRRELEERLEELEEELAeLEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 670 LQNQVSEETIKVRQLDSALEICKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQ 749
Cdd:COG1196 388 LLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 750 QQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKM-----------------EEKCESAAHEADLKR 812
Cdd:COG1196 468 LLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLlaglrglagavavligvEAAYEAALEAALAAA 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 813 --QKVIELTGTARQVKIEMDQYK---------EELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKEL 881
Cdd:COG1196 548 lqNIVVEDDEVAAAAIEYLKAAKagratflplDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTL 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 882 EKLQHSTETELTEALQKREVLET-ELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQ 960
Cdd:COG1196 628 VAARLEAALRRAVTLAGRLREVTlEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEER 707
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 961 ELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQN-------AK 1033
Cdd:COG1196 708 ELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAlgpvnllAI 787
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 2462508639 1034 EQLRE----KEFIMLQNEQeisqLKKEIERTQQRMKEMESVMKEQ 1074
Cdd:COG1196 788 EEYEEleerYDFLSEQRED----LEEARETLEEAIEEIDRETRER 828
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
765-1077 |
4.21e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 4.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 765 LEDTQTKLEKQVSKLEQELQKqressAEKLRKMEEKCESAAHEAdlkrqkvieLTGTARQVKIEMDQYKEELSKMEKEIM 844
Cdd:TIGR02168 191 LEDILNELERQLKSLERQAEK-----AERYKELKAELRELELAL---------LVLRLEELREELEELQEELKEAEEELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 845 HLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELR 924
Cdd:TIGR02168 257 ELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 925 DVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQ----- 999
Cdd:TIGR02168 337 EELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERledrr 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1000 ----------KIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMES 1069
Cdd:TIGR02168 417 erlqqeieelLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER 496
|
....*...
gi 2462508639 1070 VMKEQEQY 1077
Cdd:TIGR02168 497 LQENLEGF 504
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
650-1178 |
8.04e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 60.08 E-value: 8.04e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 650 TESKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSALEICKEELVLH---LNQLEGNKEKFEKQLKKKSEEVYCLQKE 726
Cdd:PRK03918 188 TENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELkeeIEELEKELESLEGSKRKLEEKIRELEER 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 727 LKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNgELEDTQTKLEKQVSKLEQELQ------KQRESSAEKLRKMEEK 800
Cdd:PRK03918 268 IEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYE-EYLDELREIEKRLSRLEEEINgieeriKELEEKEERLEELKKK 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 801 CESAAHEADLKRQKViELTGTARQVKIEMDQYKEELS-----KMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKT 875
Cdd:PRK03918 347 LKELEKRLEELEERH-ELYEEAKAKKEELERLKKRLTgltpeKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELK 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 876 NAVKELEKLQHSTET---ELTEALQKREVLE--TELQNAHGELKSTLRQLQELRDVLQKAQ--LSLEEKYTTIKDLTAEL 948
Cdd:PRK03918 426 KAIEELKKAKGKCPVcgrELTEEHRKELLEEytAELKRIEKELKEIEEKERKLRKELRELEkvLKKESELIKLKELAEQL 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 949 RECKMEIEDKKQELLEMD----QALKERNWELKqraAQVTHLDMTIREHRgEMEQKIIKLEGTLEKSELELKECNKQIES 1024
Cdd:PRK03918 506 KELEEKLKKYNLEELEKKaeeyEKLKEKLIKLK---GEIKSLKKELEKLE-ELKKKLAELEKKLDELEEELAELLKELEE 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1025 LNDK-LQNAKEQLREKEFIMlQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLgqELRLTREQVQNSH 1103
Cdd:PRK03918 582 LGFEsVEELEERLKELEPFY-NEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEEL--RKELEELEKKYSE 658
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462508639 1104 TELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVREAHLEarmqaEIKKLSAEVESLKE 1178
Cdd:PRK03918 659 EEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELE-----KLEKALERVEELRE 728
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
557-1252 |
9.23e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.08 E-value: 9.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 557 EELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIvAYSSIAAKNAELEQELML------EAQLEKKDQQFKEQEKTMSM 630
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQLERLRREREKAE-RYQALLKEKREYEGYELLkekealERQKEAIERQLASLEEELEK 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 631 LQQDIICKQHHLESLDRLLTESKGEMKKenmKKDEALKALQNQVSEETIKVRQLDSALEICKEELvlhlNQLEGNKEKFE 710
Cdd:TIGR02169 256 LTEEISELEKRLEEIEQLLEELNKKIKD---LGEEEQLRVKEKIGELEAEIASLERSIAEKEREL----EDAEERLAKLE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 711 KQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQkqrESS 790
Cdd:TIGR02169 329 AEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREIN---ELK 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 791 AEKLRKMEEKCESAAHEADLkRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTE 870
Cdd:TIGR02169 406 RELDRLQEELQRLSEELADL-NAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 871 LEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGelksTLRQLqelrdvlqkaqLSLEEKYTTIKDLTAELRE 950
Cdd:TIGR02169 485 LSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHG----TVAQL-----------GSVGERYATAIEVAAGNRL 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 951 CKMEIEDkKQELLEMDQALKERnwelkqRAAQVTHLDMTiREHRGEMEQKIIKLEGTLEKSeLELKECNKQIES------ 1024
Cdd:TIGR02169 550 NNVVVED-DAVAKEAIELLKRR------KAGRATFLPLN-KMRDERRDLSILSEDGVIGFA-VDLVEFDPKYEPafkyvf 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1025 ----LNDKLQNAKEQLREKEFIMLQNE-------------------QEISQLKKEIERTQQRMKEMEsvmkeqeqyiatq 1081
Cdd:TIGR02169 621 gdtlVVEDIEAARRLMGKYRMVTLEGElfeksgamtggsraprggiLFSRSEPAELQRLRERLEGLK------------- 687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1082 yKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVREAHLEAR 1161
Cdd:TIGR02169 688 -RELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEAR 766
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1162 ---MQAEIKKLSAEVESLKEAYHMEMISHQENHA-KWKISADSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQV---Q 1234
Cdd:TIGR02169 767 ieeLEEDLHKLEEALNDLEARLSHSRIPEIQAELsKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRidlK 846
|
730
....*....|....*...
gi 2462508639 1235 DRNEVIEAANEALLTKGE 1252
Cdd:TIGR02169 847 EQIKSIEKEIENLNGKKE 864
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
832-1245 |
2.53e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 58.51 E-value: 2.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 832 YKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQhsteTELTEALQKREVLETELQNAHG 911
Cdd:PRK02224 211 LESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLR----ETIAETEREREELAEEVRDLRE 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 912 ELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKK---QELLEMDQALKERNWELKQRAAqvthldm 988
Cdd:PRK02224 287 RLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRvaaQAHNEEAESLREDADDLEERAE------- 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 989 TIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKefimlqnEQEISQLKKEIERTQQRMKEME 1068
Cdd:PRK02224 360 ELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNA-------EDFLEELREERDELREREAELE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1069 SVMKEQEQYIAtqykEAIDL---------GQELRLT---------REQVQNSHTELAEARHQQVQAQREIERLSSELEDM 1130
Cdd:PRK02224 433 ATLRTARERVE----EAEALleagkcpecGQPVEGSphvetieedRERVEELEAELEDLEEEVEEVEERLERAEDLVEAE 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1131 KQLSKEKDAHGNhlAEELGASKVREAHLEARMQAEIKKLSAEVESlkeayhmEMISHQENHAKWKISADSQKSSVQQLNE 1210
Cdd:PRK02224 509 DRIERLEERRED--LEELIAERRETIEEKRERAEELRERAAELEA-------EAEEKREAAAEAEEEAEEAREEVAELNS 579
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 2462508639 1211 QLEKAKLELE------EAQDTVSNLHQQVQDRNEVIEAANE 1245
Cdd:PRK02224 580 KLAELKERIEslerirTLLAAIADAEDEIERLREKREALAE 620
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
887-1093 |
3.03e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.47 E-value: 3.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 887 STETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMD 966
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 967 QALKERNWELkQRAAQVTHLDMTIR-EHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQ 1045
Cdd:COG4942 104 EELAELLRAL-YRLGRQPPLALLLSpEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAE 182
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2462508639 1046 NEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELR 1093
Cdd:COG4942 183 LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIA 230
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
681-1233 |
4.85e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 57.82 E-value: 4.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 681 VRQLDSALEICKEELVLHLNQLEG----NKEKFEKQLKKKSEEVYCLQKELKIKNHSLQET-----SEQNVILQHTLQQQ 751
Cdd:pfam15921 226 LRELDTEISYLKGRIFPVEDQLEAlkseSQNKIELLLQQHQDRIEQLISEHEVEITGLTEKassarSQANSIQSQLEIIQ 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 752 QQMLQQETIRNGELEDtqtkLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQ 831
Cdd:pfam15921 306 EQARNQNSMYMRQLSD----LESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQK 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 832 YKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKL--------QHSTETELTEALQKREVLE 903
Cdd:pfam15921 382 LLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALlkamksecQGQMERQMAAIQGKNESLE 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 904 tELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQV 983
Cdd:pfam15921 462 -KVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEG 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 984 THLDmtirehrgemeqkiiKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQR 1063
Cdd:pfam15921 541 DHLR---------------NVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLE 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1064 MKEMESVMKEQEQYIatqyKEAIDLGQELRLTREQVQNSHTELAEA----RHQQVQAQREIERLSSELEDMKQLSKEKDA 1139
Cdd:pfam15921 606 LQEFKILKDKKDAKI----RELEARVSDLELEKVKLVNAGSERLRAvkdiKQERDQLLNEVKTSRNELNSLSEDYEVLKR 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1140 HGNHLAEELGASKVREAHLEARMQAEIKKLSAEVESLKEAYHMEM---ISHQENHAKWKISADSQKSSVQQLNEQLEKAK 1216
Cdd:pfam15921 682 NFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMkvaMGMQKQITAKRGQIDALQSKIQFLEEAMTNAN 761
|
570
....*....|....*..
gi 2462508639 1217 LELEEAQDTVSNLHQQV 1233
Cdd:pfam15921 762 KEKHFLKEEKNKLSQEL 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
568-1130 |
4.90e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.64 E-value: 4.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 568 KLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELM-LEAQLEKKDQQFKEQEKTMSMLQQDIIckqhHLESLD 646
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEeLELELEEAQAEEYELLAELARLEQDIA----RLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 647 RLLTESKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSALEICKEELVLHLNQLEGNKEKFEKQLKKKSEEVY----C 722
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEelleA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 723 LQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKce 802
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELL-- 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 803 saaHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELE 882
Cdd:COG1196 470 ---EEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAA 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 883 KLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEkyttiKDLTAELRECKMEIEDKKQEL 962
Cdd:COG1196 547 ALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAA-----VDLVASDLREADARYYVLGDT 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 963 LEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEfi 1042
Cdd:COG1196 622 LLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEAL-- 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1043 mlqnEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARhqqvQAQREIER 1122
Cdd:COG1196 700 ----LAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE----ELERELER 771
|
....*...
gi 2462508639 1123 LSSELEDM 1130
Cdd:COG1196 772 LEREIEAL 779
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
765-1244 |
4.99e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.38 E-value: 4.99e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 765 LEDTQTKLEKQVSKLEQELqKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQV---KIEMDQYKEELSKMEK 841
Cdd:PRK03918 167 LGEVIKEIKRRIERLEKFI-KRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLekeVKELEELKEEIEELEK 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 842 EIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLEtELQNAHGELKSTLRQLQ 921
Cdd:PRK03918 246 ELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLD-ELREIEKRLSRLEEEIN 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 922 ELRDVLQKAQlSLEEKYTTIKDLTAELRECKMEIEdKKQELLEMDQALKERNWELKQRAAQVTHLDM-----TIREHRGE 996
Cdd:PRK03918 325 GIEERIKELE-EKEERLEELKKKLKELEKRLEELE-ERHELYEEAKAKKEELERLKKRLTGLTPEKLekeleELEKAKEE 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 997 MEQKIIKLEGTLEKSELELKECNKQIESLNDK-----LQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVM 1071
Cdd:PRK03918 403 IEEEISKITARIGELKKEIKELKKAIEELKKAkgkcpVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKEL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1072 KEQEQYIATQ-----YKEAIDLGQELR-----LTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHG 1141
Cdd:PRK03918 483 RELEKVLKKEselikLKELAEQLKELEeklkkYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1142 NHLAEELGASKVREAHLEARMQAEIKKLSAEVESLKEAYhmemishqenhaKWKISADSQKSSVQQLNEQLEKAKLELEE 1221
Cdd:PRK03918 563 KKLDELEEELAELLKELEELGFESVEELEERLKELEPFY------------NEYLELKDAEKELEREEKELKKLEEELDK 630
|
490 500
....*....|....*....|...
gi 2462508639 1222 AQDTVSNLHQQVQDRNEVIEAAN 1244
Cdd:PRK03918 631 AFEELAETEKRLEELRKELEELE 653
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
876-1175 |
5.60e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 5.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 876 NAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEI 955
Cdd:TIGR02169 660 RAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERL 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 956 EDKKQELLEMDQALKERNWELKQRAAQVthldmtirehrGEMEQKIIKLEGTLEksELELKECNKQIESLNDKLQNAKEQ 1035
Cdd:TIGR02169 740 EELEEDLSSLEQEIENVKSELKELEARI-----------EELEEDLHKLEEALN--DLEARLSHSRIPEIQAELSKLEEE 806
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1036 LREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQ 1115
Cdd:TIGR02169 807 VSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD 886
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1116 AQREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVREAHLEARMqAEIKKLSAEVES 1175
Cdd:TIGR02169 887 LKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEEL-SEIEDPKGEDEE 945
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
990-1179 |
1.01e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.54 E-value: 1.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 990 IREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMES 1069
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLR 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1070 VMKEQEQ---------------------YIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELE 1128
Cdd:COG4942 112 ALYRLGRqpplalllspedfldavrrlqYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALE 191
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2462508639 1129 DMKQLSKEKDAHGNHLAEELGASKVREAHLEARMQAEIKKLSAEVESLKEA 1179
Cdd:COG4942 192 ALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
663-1249 |
1.50e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 1.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 663 KDEALKALQNQVSEETIKVRQLDSALEICKEELvlhlNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQnv 742
Cdd:TIGR02168 237 LREELEELQEELKEAEEELEELTAELQELEEKL----EELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRER-- 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 743 ilQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTA 822
Cdd:TIGR02168 311 --LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 823 RQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDqtKTELEKKTNAVKELEKLQHSTETELTEALQKREVL 902
Cdd:TIGR02168 389 AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLE--EAELKELQAELEELEEELEELQEELERLEEALEEL 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 903 ETELQNAHGELKSTLRQLQELR---DVLQKAQLSLEEKYTTIKDLTAElRECKMEIEDKKQELLEMDQalkerNWELKQR 979
Cdd:TIGR02168 467 REELEEAEQALDAAERELAQLQarlDSLERLQENLEGFSEGVKALLKN-QSGLSGILGVLSELISVDE-----GYEAAIE 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 980 AAQVTHLDMTIrehrGEMEQKIIKLEGTLEKSE------LELKECNKQieSLNDKLQNAKEQLREKEFIMLQNEQEISQL 1053
Cdd:TIGR02168 541 AALGGRLQAVV----VENLNAAKKAIAFLKQNElgrvtfLPLDSIKGT--EIQGNDREILKNIEGFLGVAKDLVKFDPKL 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1054 KKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTElaEARHQQVQAQREIERLSSELEDMKQL 1133
Cdd:TIGR02168 615 RKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSA--KTNSSILERRREIEELEEKIEELEEK 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1134 SKEKDAHGNHLAEELGASKVREAHLEARMQAEIKKLSAEVESLKEayhmemisHQENHAKWKISADSQKSSVQQLNEQLE 1213
Cdd:TIGR02168 693 IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLAR--------LEAEVEQLEERIAQLSKELTELEAEIE 764
|
570 580 590
....*....|....*....|....*....|....*.
gi 2462508639 1214 KAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLT 1249
Cdd:TIGR02168 765 ELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
861-1132 |
1.63e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.08 E-value: 1.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 861 DMILDQTKTElEKKTNAVKELEKLqHSTETELTEALQKREVLEtELQNAHGELKSTLRQLQELRDVlqKAQLSLEEKYTT 940
Cdd:COG4913 215 EYMLEEPDTF-EAADALVEHFDDL-ERAHEALEDAREQIELLE-PIRELAERYAAARERLAELEYL--RAALRLWFAQRR 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 941 IKDLTAELRECKMEIEDKKQELLEMDQALKErnwelkqraaqvthldmtIREHRGEMEQKIIKLEGtlekselelkecnK 1020
Cdd:COG4913 290 LELLEAELEELRAELARLEAELERLEARLDA------------------LREELDELEAQIRGNGG-------------D 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1021 QIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEmesvmkeqeqyiatQYKEAIDLGQELRLTREQVQ 1100
Cdd:COG4913 339 RLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAA--------------LRAEAAALLEALEEELEALE 404
|
250 260 270
....*....|....*....|....*....|..
gi 2462508639 1101 NshtELAEARHQQVQAQREIERLSSELEDMKQ 1132
Cdd:COG4913 405 E---ALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
480-1031 |
1.93e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 55.89 E-value: 1.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 480 SSKLSSLETEPVKLGGH------QVESVKDQNQHTMNKQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQ 553
Cdd:pfam15921 223 SKILRELDTEISYLKGRifpvedQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLE 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 554 LIQEELLEKAS----NSSKLESEMTKKCSQLLTLEKQLEEKIvayssiaaknAELEQELML------EAQLEKkdQQFKE 623
Cdd:pfam15921 303 IIQEQARNQNSmymrQLSDLESTVSQLRSELREAKRMYEDKI----------EELEKQLVLanseltEARTER--DQFSQ 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 624 QEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSALEI----CKEELVLHL 699
Cdd:pfam15921 371 ESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAmkseCQGQMERQM 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 700 NQLEGNKEKFEK------QLKKKSEEVYCLQKELKIKNHSLqETSEQNVILQHTLQQQQQMLQQETirNGELedtqTKLE 773
Cdd:pfam15921 451 AAIQGKNESLEKvssltaQLESTKEMLRKVVEELTAKKMTL-ESSERTVSDLTASLQEKERAIEAT--NAEI----TKLR 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 774 KQVSKLEQELQKQReSSAEKLRKMEEKCESAAHEA-------DLKRQKVIELTG-------TARQVKIEMDQYKEELSKM 839
Cdd:pfam15921 524 SRVDLKLQELQHLK-NEGDHLRNVQTECEALKLQMaekdkviEILRQQIENMTQlvgqhgrTAGAMQVEKAQLEKEINDR 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 840 EKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNA-------VKELEKLQ-------HSTETELTEALQKREVLETE 905
Cdd:pfam15921 603 RLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAgserlraVKDIKQERdqllnevKTSRNELNSLSEDYEVLKRN 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 906 LQNAHGELKSTLRQLQELrdvLQKAQLSLEEKYTTIKDLTA--------------ELRECKMEIEDKKQELLEMDQALKE 971
Cdd:pfam15921 683 FRNKSEEMETTTNKLKMQ---LKSAQSELEQTRNTLKSMEGsdghamkvamgmqkQITAKRGQIDALQSKIQFLEEAMTN 759
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 972 RNWE---LKQRAAQVTHLDMTIREHRGEM--------------EQKIIKLEGTLEKSELELKECNKQI-----ESLNDKL 1029
Cdd:pfam15921 760 ANKEkhfLKEEKNKLSQELSTVATEKNKMagelevlrsqerrlKEKVANMEVALDKASLQFAECQDIIqrqeqESVRLKL 839
|
..
gi 2462508639 1030 QN 1031
Cdd:pfam15921 840 QH 841
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
991-1244 |
2.21e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 2.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 991 REHRGEMEQKIIKLEGTLEKSELELKECNKQIESLN------DKLQNAKEQLREKEFIML-----QNEQEISQLKKEIER 1059
Cdd:TIGR02168 171 KERRKETERKLERTRENLDRLEDILNELERQLKSLErqaekaERYKELKAELRELELALLvlrleELREELEELQEELKE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1060 TQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDA 1139
Cdd:TIGR02168 251 AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELES 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1140 HGNHLAEELGASKVREAHLEARMQAEIKKLSAEVESLKEAyHMEMISHQENHAKWKISADSQKSSVQQLNEQLEKAKLEL 1219
Cdd:TIGR02168 331 KLDELAEELAELEEKLEELKEELESLEAELEELEAELEEL-ESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARL 409
|
250 260
....*....|....*....|....*
gi 2462508639 1220 EEAQDTVSNLHQQVQDRNEVIEAAN 1244
Cdd:TIGR02168 410 ERLEDRRERLQQEIEELLKKLEEAE 434
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
111-402 |
3.71e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.68 E-value: 3.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 111 QEIKSLREKLNKLRQQNACLVTQNHSLMTKFESIHFELTQSRAKVSMLE-SAQQQAASVPILEEQIINLEAEVSAQDKVL 189
Cdd:TIGR02168 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEaQIEQLKEELKALREALDELRAELTLLNEEA 819
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 190 REAENKLEQSQKMVIEKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNEALYNAEELSKAfqqyKKKVAEKLEKVQAE 269
Cdd:TIGR02168 820 ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNE----RASLEEALALLRSE 895
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 270 EEILERNLTNCEKENKRLQERCGLYKSELEILKEKLRQLKEENNNGKEKLR--------IMAVKTSEVMAQLTESRQSIL 341
Cdd:TIGR02168 896 LEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSeeysltleEAEALENKIEDDEEEARRRLK 975
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462508639 342 KLESELENKDEIlrdKFSLMNENRELKvrvaaqnERLDLCQQEIESSRVELRSLEKIISQL 402
Cdd:TIGR02168 976 RLENKIKELGPV---NLAAIEEYEELK-------ERYDFLTAQKEDLTEAKETLEEAIEEI 1026
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
771-1101 |
3.74e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 54.64 E-value: 3.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 771 KLEKQVSKLEQELQKQRESSAEKLRKMEEKcesaAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDG 850
Cdd:TIGR04523 121 KLEVELNKLEKQKKENKKNIDKFLTEIKKK----EKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKL 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 851 ENKAMHLSQLDMiLDQTKTELEKKTNavkELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKA 930
Cdd:TIGR04523 197 LKLELLLSNLKK-KIQKNKSLESQIS---ELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEK 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 931 QLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEmdQALKERNWELKQRAAQVTHLDMTIREHR---GEMEQKIIKLEGT 1007
Cdd:TIGR04523 273 QKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQ--DWNKELKSELKNQEKKLEEIQNQISQNNkiiSQLNEQISQLKKE 350
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1008 LEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAID 1087
Cdd:TIGR04523 351 LTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIER 430
|
330
....*....|....
gi 2462508639 1088 LGQELRLTREQVQN 1101
Cdd:TIGR04523 431 LKETIIKNNSEIKD 444
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
706-1159 |
4.13e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 54.74 E-value: 4.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 706 KEKFEKQLKKKSEEVYCLQKELKIKNHSLQETS---EQNVILQHTLQQQQQMLQQETI-----RNGELEDTQTKLEKQVS 777
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNELHEKQKfylRQSVIDLQTKLQEMQMERDAMAdirrrESQSQEDLRNQLQNTVH 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 778 KLE------QELQKQRESSAEKLRKM------------------EEKCESAAHEADLKRQKVIELTGTA-----RQVKIE 828
Cdd:pfam15921 153 ELEaakclkEDMLEDSNTQIEQLRKMmlshegvlqeirsilvdfEEASGKKIYEHDSMSTMHFRSLGSAiskilRELDTE 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 829 MDQYKEELSKMEKEIMHLKRDGENK-----AMHLSQLDMILDQTKTEL----EKKTNAVKELEKLQHSTETELTEALQKR 899
Cdd:pfam15921 233 ISYLKGRIFPVEDQLEALKSESQNKielllQQHQDRIEQLISEHEVEItgltEKASSARSQANSIQSQLEIIQEQARNQN 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 900 EVLETELQnahgELKSTLRQLQ-ELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQAL--------- 969
Cdd:pfam15921 313 SMYMRQLS----DLESTVSQLRsELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLqklladlhk 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 970 --------KERN---W---------------ELKQRAAQVTHLDMTIR----EHRGEMEQKIIKLEGTLEKSElELKECN 1019
Cdd:pfam15921 389 rekelsleKEQNkrlWdrdtgnsitidhlrrELDDRNMEVQRLEALLKamksECQGQMERQMAAIQGKNESLE-KVSSLT 467
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1020 KQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAidlgQELRLTREQV 1099
Cdd:pfam15921 468 AQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQEL----QHLKNEGDHL 543
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1100 QNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEkdaHGnhlaEELGASKVREAHLE 1159
Cdd:pfam15921 544 RNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQ---HG----RTAGAMQVEKAQLE 596
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
940-1243 |
4.48e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.54 E-value: 4.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 940 TIKDLTAELRECKMEIEDKKQELLEM---------DQALkernwELKQRAA---QVTHLDMTIREH---RGEMEQKIIKL 1004
Cdd:COG4913 156 DIRALKARLKKQGVEFFDSFSAYLARlrrrlgigsEKAL-----RLLHKTQsfkPIGDLDDFVREYmleEPDTFEAADAL 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1005 EG---TLEKSELELKECNKQIESL------NDKLQNAKEQLREKEFIM-----LQNEQEISQLKKEIERTQQRMKEMESV 1070
Cdd:COG4913 231 VEhfdDLERAHEALEDAREQIELLepirelAERYAAARERLAELEYLRaalrlWFAQRRLELLEAELEELRAELARLEAE 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1071 MKEQEQYIATQYKEAIDLGQELRltreqvQNSHTELAEARHQQVQAQREIERLSSELEDMKQlskekdahgnhLAEELGA 1150
Cdd:COG4913 311 LERLEARLDALREELDELEAQIR------GNGGDRLEQLEREIERLERELEERERRRARLEA-----------LLAALGL 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1151 SKVREAHLEARMQAEIKKLSAEVESLKEAYHMEmishqenhakwkisADSQKSSVQQLNEQLEKAKLELEEAQDTVSNLH 1230
Cdd:COG4913 374 PLPASAEEFAALRAEAAALLEALEEELEALEEA--------------LAEAEAALRDLRRELRELEAEIASLERRKSNIP 439
|
330
....*....|...
gi 2462508639 1231 QQVQDRNEVIEAA 1243
Cdd:COG4913 440 ARLLALRDALAEA 452
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
147-402 |
4.87e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.56 E-value: 4.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 147 ELTQSRAKVSMLESAQQQAASvpiLEEQIINLEAEVSAQDKVLREAENKLEQSQKMVIEKEQSLQESKEECIKLKVDLLE 226
Cdd:COG1196 223 KELEAELLLLKLRELEAELEE---LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 227 QTKQGKRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQAEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKLR 306
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 307 QLKEENNNGKEKLRIMAVKTSEVMAQLTESRQSILKLESELENKDEILRDKFSLMNENRELKVRVAAQNERLDLCQQEIE 386
Cdd:COG1196 380 ELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE 459
|
250
....*....|....*.
gi 2462508639 387 SSRVELRSLEKIISQL 402
Cdd:COG1196 460 ALLELLAELLEEAALL 475
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1045-1247 |
6.68e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.23 E-value: 6.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1045 QNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLS 1124
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1125 SELEDMKQLSkEKDAHGNHLAEELGASKVREAhleARMQAEIKKLSAEVESLKEayhmEMISHQENHAKWKISADSQKSS 1204
Cdd:COG4942 104 EELAELLRAL-YRLGRQPPLALLLSPEDFLDA---VRRLQYLKYLAPARREQAE----ELRADLAELAALRAELEAERAE 175
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2462508639 1205 VQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEAL 1247
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAEL 218
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
147-410 |
6.96e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.79 E-value: 6.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 147 ELTQSRAKVSMLESAQQQaasvpiLEEQIINLEAEVSAQDKVLREAENKLEQSQKMVIEKEQSLQESKEECIKLKVDLLE 226
Cdd:COG1196 254 ELEELEAELAELEAELEE------LRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 227 QTKQGKRAERQRNEALYNAEELSKAFQQykkkVAEKLEKVQAEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKLR 306
Cdd:COG1196 328 LEEELEELEEELEELEEELEEAEEELEE----AEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 307 QLKEENNNGKEKLRIMAVKTSEVMAQLTESRQSILKLESELENKDEILRDKFSLMNENRELKVRVAAQNERLDLCQQEIE 386
Cdd:COG1196 404 ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELL 483
|
250 260
....*....|....*....|....
gi 2462508639 387 SSRVELRSLEKIISQLPLKRELFG 410
Cdd:COG1196 484 EELAEAAARLLLLLEAEADYEGFL 507
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
110-394 |
8.14e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 8.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 110 DQEIKSLREKLNKLRQQNACLVTQNHSLMTKFESIHFELTQSRAKVSMLESAQ-QQAASVPILEEQIINLEAEVSAQDKV 188
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQIsALRKDLARLEAEVEQLEERIAQLSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 189 LREAENKLEQSQKMVIEKEQSLQESKEEciklkvdLLEQTKQGKRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQA 268
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAE-------IEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 269 eeeiLERNLTNCEKENKRLQERcglykseLEILKEKLRQLKEENNNGKEKLRIMAVKTSEVMAQLTESRQSILKLESELE 348
Cdd:TIGR02168 829 ----LERRIAATERRLEDLEEQ-------IEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELE 897
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 2462508639 349 NKDEILRDKFSLMNENRELKVRVAAQNERLDLCQQEIESSRVELRS 394
Cdd:TIGR02168 898 ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
915-1123 |
9.84e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.38 E-value: 9.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 915 STLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECkmeiedkkQELLEMDQALKERNWELKQRAAqvthLDMTIREHR 994
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALEAELDAL--------QERREALQRLAEYSWDEIDVAS----AEREIAELE 674
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 995 GEMEQkiiklegtLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQ 1074
Cdd:COG4913 675 AELER--------LDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLE 746
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2462508639 1075 EQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHqqvQAQREIERL 1123
Cdd:COG4913 747 LRALLEERFAAALGDAVERELRENLEERIDALRARLN---RAEEELERA 792
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1039-1250 |
1.24e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 52.71 E-value: 1.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1039 KEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIAtQYKEA---IDLGQELRLTREQVQNSHTELAEARHQQVQ 1115
Cdd:COG3206 159 EAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALE-EFRQKnglVDLSEEAKLLLQQLSELESQLAEARAELAE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1116 AQREIERLSSELEDMKQLSKE--KDAHGNHLAEELGASKVREAHLEARMQAE---IKKLSAEVESLKEAYHMEMishQEN 1190
Cdd:COG3206 238 AEARLAALRAQLGSGPDALPEllQSPVIQQLRAQLAELEAELAELSARYTPNhpdVIALRAQIAALRAQLQQEA---QRI 314
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1191 HAKWKISADSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRnEVIEAANEALLTK 1250
Cdd:COG3206 315 LASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREV-EVARELYESLLQR 373
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
557-1140 |
1.25e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.12 E-value: 1.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 557 EELLEKASNSS-KLESEMTKKCSQLLTLEKQLEEKIVAysSIAAKNAELEQELM-LEAQLEKKDQQFKEQEKTMSMLQQD 634
Cdd:PRK02224 165 EEYRERASDARlGVERVLSDQRGSLDQLKAQIEEKEEK--DLHERLNGLESELAeLDEEIERYEEQREQARETRDEADEV 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 635 IICKQHHLESLDRL------LTESKGEMKKENMKKDEALKALQNQVSE--ETIKVRQLDSALEICKEELV-LHLNQLEGN 705
Cdd:PRK02224 243 LEEHEERREELETLeaeiedLRETIAETEREREELAEEVRDLRERLEEleEERDDLLAEAGLDDADAEAVeARREELEDR 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 706 KEKFEKQLkkkseevycLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNgELEDTQTKLEKQVSKLE----- 780
Cdd:PRK02224 323 DEELRDRL---------EECRVAAQAHNEEAESLREDADDLEERAEELREEAAELES-ELEEAREAVEDRREEIEeleee 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 781 -QELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKE--------ELSKMEKEIMHLKRDGE 851
Cdd:PRK02224 393 iEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEAlleagkcpECGQPVEGSPHVETIEE 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 852 NKAmHLSQLDMILDQTKTELEKKTNAVKELEKLQhSTETELTEALQKREVLETELQNAHGELKSTLRQLQELR------- 924
Cdd:PRK02224 473 DRE-RVEELEAELEDLEEEVEEVEERLERAEDLV-EAEDRIERLEERREDLEELIAERRETIEEKRERAEELReraaele 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 925 -------DVLQKAQLSLEEKYTTIKDLTAELRECKMEIE--DKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRG 995
Cdd:PRK02224 551 aeaeekrEAAAEAEEEAEEAREEVAELNSKLAELKERIEslERIRTLLAAIADAEDEIERLREKREALAELNDERRERLA 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 996 EMEQKIIKLEGTLEKSelelkecnkQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQE 1075
Cdd:PRK02224 631 EKRERKRELEAEFDEA---------RIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERRE 701
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462508639 1076 ------QYIATQYKEAidlgqelrltrEQVQNSHTEL-AEARhqqvqaQREIERLSSELEDMKQLSKEKDAH 1140
Cdd:PRK02224 702 alenrvEALEALYDEA-----------EELESMYGDLrAELR------QRNVETLERMLNETFDLVYQNDAY 756
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
998-1179 |
1.43e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.07 E-value: 1.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 998 EQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQY 1077
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1078 IATQYKEAIDLGQ----ELRLTREQVQNS------HTELAEARHQQVQAQR----EIERLSSELEDMKQLSKEKDAHGNH 1143
Cdd:COG4942 106 LAELLRALYRLGRqpplALLLSPEDFLDAvrrlqyLKYLAPARREQAEELRadlaELAALRAELEAERAELEALLAELEE 185
|
170 180 190
....*....|....*....|....*....|....*.
gi 2462508639 1144 LAEELGASKVREAHLEARMQAEIKKLSAEVESLKEA 1179
Cdd:COG4942 186 ERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
556-1155 |
1.63e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.76 E-value: 1.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 556 QEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQelmLEAQLEKKDQQFKEQEKTMSMLQQDI 635
Cdd:PRK03918 199 EKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELES---LEGSKRKLEEKIRELEERIEELKKEI 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 636 ickqHHLESLDRLLTESKGEMKKEnmkkdEALKALQNQVSEETIKVRQLDSALEICKEELVLHLNQLEGNKEKFEKQLKK 715
Cdd:PRK03918 276 ----EELEEKVKELKELKEKAEEY-----IKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKK 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 716 KSEevycLQKELKI--KNHSLQETSEQNVILQHTLQQQQQMLQQETIRN--GELEDTQTKLEKQVSKLEQEL------QK 785
Cdd:PRK03918 347 LKE----LEKRLEEleERHELYEEAKAKKEELERLKKRLTGLTPEKLEKelEELEKAKEEIEEEISKITARIgelkkeIK 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 786 QRESSAEKLRKMEEKCESAAHEADLKRQKVIeltgtarqvkieMDQYKEELSKMEKEIMHLKRDGENkamhlsqldmiLD 865
Cdd:PRK03918 423 ELKKAIEELKKAKGKCPVCGRELTEEHRKEL------------LEEYTAELKRIEKELKEIEEKERK-----------LR 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 866 QTKTELEKKTNAVKELEKLqHSTETELTEALQKREVLETELQNAHGELkstLRQLQELRDVLQKAQLSLEEKYTTIKDLT 945
Cdd:PRK03918 480 KELRELEKVLKKESELIKL-KELAEQLKELEEKLKKYNLEELEKKAEE---YEKLKEKLIKLKGEIKSLKKELEKLEELK 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 946 AELRECKMEIEDKKQELLEMDQALKERNWELKQraaqvthldmtirehrgEMEQKIIKLEgTLEKSELELKECNKQIESL 1025
Cdd:PRK03918 556 KKLAELEKKLDELEEELAELLKELEELGFESVE-----------------ELEERLKELE-PFYNEYLELKDAEKELERE 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1026 NDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQY-IATQYKEAIDLGQELRLTREQVQNSHT 1104
Cdd:PRK03918 618 EKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLeLSRELAGLRAELEELEKRREEIKKTLE 697
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 2462508639 1105 ELAEARHQQVQAQREIERLSSELEDMKQLsKEKDAHGNHLAEELGASKVRE 1155
Cdd:PRK03918 698 KLKEELEEREKAKKELEKLEKALERVEEL-REKVKKYKALLKERALSKVGE 747
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
909-1129 |
2.29e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 2.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 909 AHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDM 988
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 989 TIREHRGEMEQKIIKLEGTLEKSELEL---KECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMK 1065
Cdd:COG4942 98 ELEAQKEELAELLRALYRLGRQPPLALllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462508639 1066 EMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNshtELAEARHQQVQAQREIERLSSELED 1129
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAA---ELAELQQEAEELEALIARLEAEAAA 238
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
611-1168 |
2.70e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.07 E-value: 2.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 611 EAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSALEI 690
Cdd:PTZ00121 1234 EAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEE 1313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 691 CKEELVLHLNQLEGNKE-----KFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGEL 765
Cdd:PTZ00121 1314 AKKADEAKKKAEEAKKKadaakKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKA 1393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 766 EDTQTKLEKQVSKLEQ----ELQKQRESSAEKLRKMEEKCESAAHEADLKRqKVIELTGTARQVKIEMDQYKEELSKMEK 841
Cdd:PTZ00121 1394 DEAKKKAEEDKKKADElkkaAAAKKKADEAKKKAEEKKKADEAKKKAEEAK-KADEAKKKAEEAKKAEEAKKKAEEAKKA 1472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 842 EIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLET--ELQNAHGELKS-TLR 918
Cdd:PTZ00121 1473 DEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKadEAKKAEEKKKAdELK 1552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 919 QLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQEllemdQALKERNWELKQRAAQVthldmtirehRGEME 998
Cdd:PTZ00121 1553 KAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIE-----EVMKLYEEEKKMKAEEA----------KKAEE 1617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 999 QKIIKLEgtLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYI 1078
Cdd:PTZ00121 1618 AKIKAEE--LKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALK 1695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1079 --ATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVREA 1156
Cdd:PTZ00121 1696 keAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRK 1775
|
570
....*....|..
gi 2462508639 1157 HLEARMQAEIKK 1168
Cdd:PTZ00121 1776 EKEAVIEEELDE 1787
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1003-1167 |
3.02e-06 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 51.32 E-value: 3.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1003 KLEGTLEKSELELKECNKQIESLN-DKLQNAKEQLREKEfimLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQ 1081
Cdd:PRK12704 32 KIKEAEEEAKRILEEAKKEAEAIKkEALLEAKEEIHKLR---NEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKR 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1082 YKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSE------LEDMKQLSKEkDAhgnhlaeelgASKVRE 1155
Cdd:PRK12704 109 EEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEeakeilLEKVEEEARH-EA----------AVLIKE 177
|
170
....*....|..
gi 2462508639 1156 AHLEARMQAEIK 1167
Cdd:PRK12704 178 IEEEAKEEADKK 189
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
165-969 |
3.37e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 3.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 165 AASVPILEEQIINLEAEVSAQDKVLREAENKLEQSQKMVIEKEQSLQE--------SKEECIKLKVDLLEQTKQGKRAER 236
Cdd:TIGR02169 229 LKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEElnkkikdlGEEEQLRVKEKIGELEAEIASLER 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 237 QRNEALYNAEELSKAFQQYKkkvaEKLEKVQAEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKLRQLKEENNNGK 316
Cdd:TIGR02169 309 SIAEKERELEDAEERLAKLE----AEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETR 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 317 EKLRIMAVKTSEVMAQLTESRQSILKLESELENKDEILRDkfsLMNENRELKVRVAAQNERLDLCQQEIESSRVELRSLE 396
Cdd:TIGR02169 385 DELKDYREKLEKLKREINELKRELDRLQEELQRLSEELAD---LNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLA 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 397 KIISQLplKRELFGFKSYLSKYqmssfsnkEDRcigcceanklvISDLRIKLAIKEAeiqklhanltanQLSQSLITCND 476
Cdd:TIGR02169 462 ADLSKY--EQELYDLKEEYDRV--------EKE-----------LSKLQRELAEAEA------------QARASEERVRG 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 477 SQESSKLSSLETEPVKLGGHQVESVKDQNQHTMNKQYEKERQRLVTGIEELRTKLIQIeaensdLKVNMAHRTSQFQLiq 556
Cdd:TIGR02169 509 GRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEVAAGNRLNNVVVEDDAVAKEAIEL------LKRRKAGRATFLPL-- 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 557 EELLEKASNSSKL-ESEMTKKCSQLLTLEKQLEeKIVAY---SSIAAKNAELEQELMLEAQLEKKDQQFKEQEKTM---S 629
Cdd:TIGR02169 581 NKMRDERRDLSILsEDGVIGFAVDLVEFDPKYE-PAFKYvfgDTLVVEDIEAARRLMGKYRMVTLEGELFEKSGAMtggS 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 630 MLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSALEickeELVLHLNQLEGNKEKF 709
Cdd:TIGR02169 660 RAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIG----EIEKEIEQLEQEEEKL 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 710 EKQLKKKSEEVYCLQKELKIKNHSLQETSEqnvilqhtlqqqqqmlqqetiRNGELEDTQTKLEKQVSKLEQELQKQR-- 787
Cdd:TIGR02169 736 KERLEELEEDLSSLEQEIENVKSELKELEA---------------------RIEELEEDLHKLEEALNDLEARLSHSRip 794
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 788 --ESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEImhlkrdgeNKAMHLSQLDmiLD 865
Cdd:TIGR02169 795 eiQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSI--------EKEIENLNGK--KE 864
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 866 QTKTELEKKTNAVKELEKLQHSTETELTEALQKREvletELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLT 945
Cdd:TIGR02169 865 ELEEELEELEAALRDLESRLGDLKKERDELEAQLR----ELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPK 940
|
810 820
....*....|....*....|....*..
gi 2462508639 946 AELRE---CKMEIEDKKQELLEMDQAL 969
Cdd:TIGR02169 941 GEDEEipeEELSLEDVQAELQRVEEEI 967
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
592-1138 |
4.41e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.17 E-value: 4.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 592 VAYSSIAAKNAELEQELM-----LEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEA 666
Cdd:TIGR04523 22 VGYKNIANKQDTEEKQLEkklktIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 667 LKALQNQVSEETIKVRQldsaleicKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVilqh 746
Cdd:TIGR04523 102 NSDLSKINSEIKNDKEQ--------KNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKE---- 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 747 tlqqqqqmlqqetirngELEDTQTKLEKQVSKLEQELQKQR------ESSAEKLRKMEEKCESAAHEADLKRQKVIELTG 820
Cdd:TIGR04523 170 -----------------ELENELNLLEKEKLNIQKNIDKIKnkllklELLLSNLKKKIQKNKSLESQISELKKQNNQLKD 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 821 TARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVK----ELEKLQHSTETELTEAL 896
Cdd:TIGR04523 233 NIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNqlksEISDLNNQKEQDWNKEL 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 897 QKR-EVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQEllemDQALKERNWE 975
Cdd:TIGR04523 313 KSElKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKE----NQSYKQEIKN 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 976 LKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKK 1055
Cdd:TIGR04523 389 LESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLET 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1056 EIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSK 1135
Cdd:TIGR04523 469 QLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELN 548
|
...
gi 2462508639 1136 EKD 1138
Cdd:TIGR04523 549 KDD 551
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
759-1236 |
4.59e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 4.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 759 TIRNGELEDTQTKLEKQVSKLEQELQKQR-ESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVK-IEMDQYKEEL 836
Cdd:COG4913 268 RERLAELEYLRAALRLWFAQRRLELLEAElEELRAELARLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLEREI 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 837 SKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEkktNAVKELEKLQHSTETELTEALQKRevleTELQNAHGELKST 916
Cdd:COG4913 348 ERLERELEERERRRARLEALLAALGLPLPASAEEFA---ALRAEAAALLEALEEELEALEEAL----AEAEAALRDLRRE 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 917 LRQLQELRDVLQKAQLSLEEKYTTIKDLTAElrECKMEIEDKK--QELLEMDQalKERNWEL----------------KQ 978
Cdd:COG4913 421 LRELEAEIASLERRKSNIPARLLALRDALAE--ALGLDEAELPfvGELIEVRP--EEERWRGaiervlggfaltllvpPE 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 979 RAAQV------THLDMTIREHRGEMEQKIIKLEGTLEKS---ELELKEcNKQIESLNDKLQ------------------- 1030
Cdd:COG4913 497 HYAAAlrwvnrLHLRGRLVYERVRTGLPDPERPRLDPDSlagKLDFKP-HPFRAWLEAELGrrfdyvcvdspeelrrhpr 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1031 -----------------NAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELR 1093
Cdd:COG4913 576 aitragqvkgngtrhekDDRRRIRSRYVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAE 655
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1094 LTREQVqnshtELAEARHQQVQAQREIERL---SSELEDMKQLSKEKDAHGNHLAEELGASKVREAHLE---ARMQAEIK 1167
Cdd:COG4913 656 YSWDEI-----DVASAEREIAELEAELERLdasSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEkelEQAEEELD 730
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462508639 1168 KLSAEVESLKEAYHMEMISHQENHAKWKISADSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDR 1236
Cdd:COG4913 731 ELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
764-983 |
4.72e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 4.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 764 ELEDTQTKLEKQVSKLEQeLQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEI 843
Cdd:COG4942 28 ELEQLQQEIAELEKELAA-LKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 844 MHLKRDGEnKAMHLSQLDMILDQTK-TELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQE 922
Cdd:COG4942 107 AELLRALY-RLGRQPPLALLLSPEDfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEE 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462508639 923 LRDVLQKAQlslEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQV 983
Cdd:COG4942 186 ERAALEALK---AERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
828-1040 |
5.98e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 5.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 828 EMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQ 907
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 908 NAHGELKSTLRQLQELRD-------VLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRA 980
Cdd:COG4942 101 AQKEELAELLRALYRLGRqpplallLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALL 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 981 AQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKE 1040
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
903-1110 |
6.57e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 49.83 E-value: 6.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 903 ETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAA- 981
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARa 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 982 ------QVTHLDM------------------TIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLR 1037
Cdd:COG3883 95 lyrsggSVSYLDVllgsesfsdfldrlsalsKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELE 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462508639 1038 EKefiMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEAR 1110
Cdd:COG3883 175 AQ---QAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 244
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
769-1164 |
6.73e-06 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 50.51 E-value: 6.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 769 QTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKR 848
Cdd:pfam05557 4 LIESKARLSQLQNEKKQMELEHKRARIELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNRLKKK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 849 DGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREvletELQNAHGELKSTLRQLQELRDVLQ 928
Cdd:pfam05557 84 YLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELE----ELQERLDLLKAKASEAEQLRQNLE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 929 KAQLSLEEKYTTIKDLTAELR---ECKMEIEDKKQELLEMDQALKernwELKQRAAQVTHLDMTIR-------------- 991
Cdd:pfam05557 160 KQQSSLAEAEQRIKELEFEIQsqeQDSEIVKNSKSELARIPELEK----ELERLREHNKHLNENIEnklllkeevedlkr 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 992 --EHRGEMEQKIIKLEGTLEKSELELKECNK-----------------QIESLNDKLQNAKEQLREKEFIMLQNEQEISQ 1052
Cdd:pfam05557 236 klEREEKYREEAATLELEKEKLEQELQSWVKlaqdtglnlrspedlsrRIEQLQQREIVLKEENSSLTSSARQLEKARRE 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1053 LKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQReIERLSSELEDMKQ 1132
Cdd:pfam05557 316 LEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILESYDKELTMSNYSPQLLER-IEEAEDMTQKMQA 394
|
410 420 430
....*....|....*....|....*....|..
gi 2462508639 1133 LSKEKDAHGNHLAEELGASKVREAHLEARMQA 1164
Cdd:pfam05557 395 HNEEMEAQLSVAEEELGGYKQQAQTLERELQA 426
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
151-905 |
6.79e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 6.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 151 SRAKVSMLESAQQQAASVPILEEQIINLEAEVSAQDKVLREAENKLEQSQKMV--------------IEKEQSLQESKEE 216
Cdd:TIGR02169 229 LKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIkdlgeeeqlrvkekIGELEAEIASLER 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 217 CIKLKVDLLEQT-KQGKRAERQRNEALYNAEELSKAFQQYKKKVA---EKLEKVQAEEEILERNLTNCEKENKRLQERCG 292
Cdd:TIGR02169 309 SIAEKERELEDAeERLAKLEAEIDKLLAEIEELEREIEEERKRRDkltEEYAELKEELEDLRAELEEVDKEFAETRDELK 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 293 LYKSELEILKEKLRQLKEENNNGKEKLRIMAVKTSEVMAQLTESRQSILKLESELENKDEILRDKFSLMNENRELKVRVA 372
Cdd:TIGR02169 389 DYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYE 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 373 AQNERLDLCQQEIESsrvELRSLEKIISQLPLKRELFGFKSYLSKYQMSSFSNK--------------EDRCIGCCEA-- 436
Cdd:TIGR02169 469 QELYDLKEEYDRVEK---ELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASiqgvhgtvaqlgsvGERYATAIEVaa 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 437 -----NKLVISDLRIKLAIKEAEIQKL--HANLTANQLSQS------------------LITCND--------------- 476
Cdd:TIGR02169 546 gnrlnNVVVEDDAVAKEAIELLKRRKAgrATFLPLNKMRDErrdlsilsedgvigfavdLVEFDPkyepafkyvfgdtlv 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 477 --SQESSKLSSLETEPVKLGGHQVE--------SVKDQNQHTMNKQYEKERQRLVTGIEELrtkliqiEAENSDLKVNMA 546
Cdd:TIGR02169 626 veDIEAARRLMGKYRMVTLEGELFEksgamtggSRAPRGGILFSRSEPAELQRLRERLEGL-------KRELSSLQSELR 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 547 HRTSQFqliqEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIvayssiaaknAELEQEL-MLEAQLEKKDQQFKEQE 625
Cdd:TIGR02169 699 RIENRL----DELSQELSDASRKIGEIEKEIEQLEQEEEKLKERL----------EELEEDLsSLEQEIENVKSELKELE 764
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 626 KTMSMLQQDIICKQHHLESLDRLLTESKgemkkenmkkdeaLKALQNQVSEETIKVRQLDSALEickeelvlHLNQLEGN 705
Cdd:TIGR02169 765 ARIEELEEDLHKLEEALNDLEARLSHSR-------------IPEIQAELSKLEEEVSRIEARLR--------EIEQKLNR 823
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 706 KEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNvilqhtlqqqqqmlqqetirNGELEDTQTKLEKQVSKLEQ---- 781
Cdd:TIGR02169 824 LTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENL--------------------NGKKEELEEELEELEAALRDlesr 883
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 782 --ELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEimhlkrdgenkamhlSQ 859
Cdd:TIGR02169 884 lgDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEI---------------PE 948
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|...
gi 2462508639 860 LDMILDQTKTELEKKTNAVKELEKLQHSTETELTEAL-------QKREVLETE 905
Cdd:TIGR02169 949 EELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLkrldelkEKRAKLEEE 1001
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
834-1221 |
1.24e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 49.68 E-value: 1.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 834 EELSKMEKEIMHLKrDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGEL 913
Cdd:PRK03918 145 ESREKVVRQILGLD-DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREEL 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 914 ---KSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNwELKQRAAQVthldMTI 990
Cdd:PRK03918 224 eklEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEY----IKL 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 991 REHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKlQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESV 1070
Cdd:PRK03918 299 SEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEK-EERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERL 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1071 MKEQEQYIATQYKEAIdlgQELRLTREQVQNshtELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEElga 1150
Cdd:PRK03918 378 KKRLTGLTPEKLEKEL---EELEKAKEEIEE---EISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEE--- 448
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462508639 1151 skvREAHLEARMQAEIKKLSAEVESLKEAyhMEMISHQENHAKWKISADSQKSSVQQLNEQLEKAKLELEE 1221
Cdd:PRK03918 449 ---HRKELLEEYTAELKRIEKELKEIEEK--ERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKK 514
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
864-1076 |
1.59e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 1.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 864 LDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKD 943
Cdd:COG4942 29 LEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 944 LTAELreCKMEIEDKKQELL---------EMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELE 1014
Cdd:COG4942 109 LLRAL--YRLGRQPPLALLLspedfldavRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEE 186
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462508639 1015 LKECNKQIESLNDKLQNAKEQLREKEfimlqneQEISQLKKEIERTQQRMKEMESVMKEQEQ 1076
Cdd:COG4942 187 RAALEALKAERQKLLARLEKELAELA-------AELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
891-1247 |
1.99e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.00 E-value: 1.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 891 ELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLE--EKYTTIKDLTAELRECKMEIEDKKQELlemdQA 968
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEklEKLLQLLPLYQELEALEAELAELPERL----EE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 969 LKERNWELKQRAAQVTHLDMTIREHRGEMEQKiikLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQ 1048
Cdd:COG4717 151 LEERLEELRELEEELEELEAELAELQEELEEL---LEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEE 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1049 EISQLKKEIERTQ--QRMKEMESV------------MKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQV 1114
Cdd:COG4717 228 ELEQLENELEAAAleERLKEARLLlliaaallallgLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEEL 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1115 QAQREIERLSSE--LEDMKQLSKEKDAHGNHLAEELG-ASKVREAHLEARM---QAEIKKLSAEVESLKEAYHMEMISHQ 1188
Cdd:COG4717 308 QALPALEELEEEelEELLAALGLPPDLSPEELLELLDrIEELQELLREAEEleeELQLEELEQEIAALLAEAGVEDEEEL 387
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462508639 1189 ENHAKWKISADSQKSSVQQLNEQLEKAKLELEEAQDTVS--NLHQQVQDRNEVIEAANEAL 1247
Cdd:COG4717 388 RAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDeeELEEELEELEEELEELEEEL 448
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
193-1041 |
2.02e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 49.27 E-value: 2.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 193 ENKLEQSQKMVIEKEQSLQESKEEciklkvdlLEQTKQGKRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKV-QAEEE 271
Cdd:TIGR00606 230 EAQLESSREIVKSYENELDPLKNR--------LKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVfQGTDE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 272 ILERNLTNCEKENKRLQERCGLYKSELEILKEKLRQLKEENNNGKEKLRIMAVKTSEVMAQLTESRQSILKLESELEnKD 351
Cdd:TIGR00606 302 QLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLE-LD 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 352 EILRDKFS---------LMNENRELKVRVAAQN-----ERLDLCQQEIESSRVELRSLEKIISQLPLKRELFGFKSYLSK 417
Cdd:TIGR00606 381 GFERGPFSerqiknfhtLVIERQEDEAKTAAQLcadlqSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVI 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 418 YQMSSFSNKEDRCIGCCEANKLVISDLR----------IKLAIKEAEIQKLHANLTANQLSQSLITCNDSQESSKLSSLE 487
Cdd:TIGR00606 461 KELQQLEGSSDRILELDQELRKAERELSkaeknsltetLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEML 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 488 TEPVKLGGHQVESVKDQNQHTMNKQ--YEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASN 565
Cdd:TIGR00606 541 TKDKMDKDEQIRKIKSRHSDELTSLlgYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQ 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 566 SSKLESEMTKKC------SQLLTLEKQLEEKIVAYSSIAAKNAELEQELmleAQLEKKDQQ----FKEQEKTMSMLQQDI 635
Cdd:TIGR00606 621 LSSYEDKLFDVCgsqdeeSDLERLKEEIEKSSKQRAMLAGATAVYSQFI---TQLTDENQSccpvCQRVFQTEAELQEFI 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 636 ICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSALEIcKEELVLHLNQLEGNKEKFEKQL-- 713
Cdd:TIGR00606 698 SDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNK-LQKVNRDIQRLKNDIEEQETLLgt 776
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 714 ---KKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEqELQKQRESS 790
Cdd:TIGR00606 777 impEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIE-LNRKLIQDQ 855
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 791 AEKLRKMEEKCEsaaheaDLKRQKVIELTGTARQvkiemDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTe 870
Cdd:TIGR00606 856 QEQIQHLKSKTN------ELKSEKLQIGTNLQRR-----QQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQ- 923
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 871 lekktnavkELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRD--------VLQKAQLSLEEKYTTIK 942
Cdd:TIGR00606 924 ---------EKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDdylkqketELNTVNAQLEECEKHQE 994
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 943 DLTAELRECKMEIEDKKQE--LLEMDQALKERNWELKQRAAQVTHLDMTIREHR-GEMEQKIIKLEGTLEKSELELKECN 1019
Cdd:TIGR00606 995 KINEDMRLMRQDIDTQKIQerWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQvLQMKQEHQKLEENIDLIKRNHVLAL 1074
|
890 900
....*....|....*....|..
gi 2462508639 1020 KQIESLNDKLQNAKEQLREKEF 1041
Cdd:TIGR00606 1075 GRQKGYEKEIKHFKKELREPQF 1096
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
521-1068 |
2.39e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 48.74 E-value: 2.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 521 VTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAK 600
Cdd:PRK01156 182 ISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTA 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 601 NAELEQELMLEAQLEKKDQQFKEQEKTMSMLQQ----DIICKQHHLESLDRLLTESKGEMKK--ENMKKDEALKALQNQV 674
Cdd:PRK01156 262 ESDLSMELEKNNYYKELEERHMKIINDPVYKNRnyinDYFKYKNDIENKKQILSNIDAEINKyhAIIKKLSVLQKDYNDY 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 675 SEETIKvrqldsaleicKEELVLHLNQLEGNKEKFEKQLKKKSeevyclQKELKIKNHSLQETSEQNVILQHTLQQQQQM 754
Cdd:PRK01156 342 IKKKSR-----------YDDLNNQILELEGYEMDYNSYLKSIE------SLKKKIEEYSKNIERMSAFISEILKIQEIDP 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 755 LQQETIRNgELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEkcesaaheadLKRQKVIELTGT---ARQVKIEMDQ 831
Cdd:PRK01156 405 DAIKKELN-EINVKLQDISSKVSSLNQRIRALRENLDELSRNMEM----------LNGQSVCPVCGTtlgEEKSNHIINH 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 832 YKEELSKMEKEIMHLKRDG---ENKAMHLSQLDMILDqtKTELEKKTNAVKELEKLQHS------TETELTEALQKREVL 902
Cdd:PRK01156 474 YNEKKSRLEEKIREIEIEVkdiDEKIVDLKKRKEYLE--SEEINKSINEYNKIESARADledikiKINELKDKHDKYEEI 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 903 ETELQNAH-GELKSTLRQLQELRDV-----LQKAQLSLEEKYTTIKDLTAELRECKMEIEDKK-------QELLEMDQAL 969
Cdd:PRK01156 552 KNRYKSLKlEDLDSKRTSWLNALAVislidIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKsyidksiREIENEANNL 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 970 KERNWELKQRAAQVTHLDMTIREHRGEMEQK--IIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNE 1047
Cdd:PRK01156 632 NNKYNEIQENKILIEKLRGKIDNYKKQIAEIdsIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRI 711
|
570 580
....*....|....*....|.
gi 2462508639 1048 QEISQLKKEIERTQQRMKEME 1068
Cdd:PRK01156 712 NELSDRINDINETLESMKKIK 732
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
895-1129 |
2.58e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 2.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 895 ALQKREVLETE---LQNAHGELKSTLRQLQELRDVLQKAQLS---LEEKYTTIKDLTAELRECkMEIEDKKQELLEMDQA 968
Cdd:COG4913 608 NRAKLAALEAElaeLEEELAEAEERLEALEAELDALQERREAlqrLAEYSWDEIDVASAEREI-AELEAELERLDASSDD 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 969 LKernwELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQ 1048
Cdd:COG4913 687 LA----ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDA 762
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1049 EISQLKKEIERTQQRMKEM-----ESVMKEQEQYIATQYKEAIDLGQELRlTREQVQNSHTELAE---ARHQQ------- 1113
Cdd:COG4913 763 VERELRENLEERIDALRARlnraeEELERAMRAFNREWPAETADLDADLE-SLPEYLALLDRLEEdglPEYEErfkelln 841
|
250
....*....|....*.
gi 2462508639 1114 VQAQREIERLSSELED 1129
Cdd:COG4913 842 ENSIEFVADLLSKLRR 857
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
583-1068 |
2.60e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.61 E-value: 2.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 583 LEKQLEEKIVAYSSIAAKNAELEQElmleaQLEKKDQQFKEQEKTMSMLQQdiicKQHHLESLDRLLTESKGEmkKENMK 662
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLK-----ELKELEEELKEAEEKEEEYAE----LQEELEELEEELEELEAE--LEELR 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 663 KDEALKALQNQVSEETIKVRQLDSALEICKEELvlhlnqlegnkekfeKQLKKKSEEVYCLQKELKIKNHSLQETSEQNV 742
Cdd:COG4717 116 EELEKLEKLLQLLPLYQELEALEAELAELPERL---------------EELEERLEELRELEEELEELEAELAELQEELE 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 743 ILQHTLQQQQQMLQQETIRN-GELEDTQTKLEKQVSKLEQELQKQRessaEKLRKMEEKCESAAHEADLKRQKVIELTGT 821
Cdd:COG4717 181 ELLEQLSLATEEELQDLAEElEELQQRLAELEEELEEAQEELEELE----EELEQLENELEAAALEERLKEARLLLLIAA 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 822 ARQVKIEMDQYKEELSKMEKEIMHLkrdgenKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREV 901
Cdd:COG4717 257 ALLALLGLGGSLLSLILTIAGVLFL------VLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGL 330
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 902 LETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYtTIKDLTAELRECKMEIEDKKQELLEMDQalkernwELKQRAA 981
Cdd:COG4717 331 PPDLSPEELLELLDRIEELQELLREAEELEEELQLEE-LEQEIAALLAEAGVEDEEELRAALEQAE-------EYQELKE 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 982 QVTHLDMTIREHRGEMEQKIikLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIM--LQNEQEISQLKKEIER 1059
Cdd:COG4717 403 ELEELEEQLEELLGELEELL--EALDEEELEEELEELEEELEELEEELEELREELAELEAELeqLEEDGELAELLQELEE 480
|
....*....
gi 2462508639 1060 TQQRMKEME 1068
Cdd:COG4717 481 LKAELRELA 489
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
829-1244 |
3.63e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.19 E-value: 3.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 829 MDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKrEVLETELQN 908
Cdd:pfam15921 80 LEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQN-TVHELEAAK 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 909 AHGE--LKSTLRQLQELRDVLQKAQLSLEEKYTTIKDL---------------TAELRECKMEIEDKKQELLEMDQALKE 971
Cdd:pfam15921 159 CLKEdmLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFeeasgkkiyehdsmsTMHFRSLGSAISKILRELDTEISYLKG 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 972 RNWELKQ-----RAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQn 1046
Cdd:pfam15921 239 RIFPVEDqlealKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMR- 317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1047 eqEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIER-LSS 1125
Cdd:pfam15921 318 --QLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKeLSL 395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1126 ELEDMKQLSKEKDAHG---NHLAEELGASKVREAHLEARMQAEIKKLSAEVESLKEAYHMEMIShQENHAKWKISADSQK 1202
Cdd:pfam15921 396 EKEQNKRLWDRDTGNSitiDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNES-LEKVSSLTAQLESTK 474
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 2462508639 1203 SSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAAN 1244
Cdd:pfam15921 475 EMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATN 516
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
805-1163 |
4.23e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 48.02 E-value: 4.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 805 AHEADLKRQKVI----ELTGTARQVKIEMDQYKE---ELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTktelEKKTNA 877
Cdd:COG3096 277 ANERRELSERALelrrELFGARRQLAEEQYRLVEmarELEELSARESDLEQDYQAASDHLNLVQTALRQQ----EKIERY 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 878 VKELEKL------QHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQ-------KAQLSLEE--KYTTIK 942
Cdd:COG3096 353 QEDLEELterleeQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQtraiqyqQAVQALEKarALCGLP 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 943 DLTAElreckmEIEDKKQELLEMDQALKERNWELKQRAAQVthlDMTIREHRGEMeQKIIKLEGTLEKSelelkecnkqi 1022
Cdd:COG3096 433 DLTPE------NAEDYLAAFRAKEQQATEEVLELEQKLSVA---DAARRQFEKAY-ELVCKIAGEVERS----------- 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1023 eslnDKLQNAKEQLRE-KEFIML-QNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQ 1100
Cdd:COG3096 492 ----QAWQTARELLRRyRSQQALaQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLE 567
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462508639 1101 NSHTELAEARHQQVQAQREIERLSselEDMKQLSK------EKDAHGNHLAEELGASKVREAHLEARMQ 1163
Cdd:COG3096 568 ELEEQAAEAVEQRSELRQQLEQLR---ARIKELAArapawlAAQDALERLREQSGEALADSQEVTAAMQ 633
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
890-1163 |
4.32e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.91 E-value: 4.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 890 TELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKD--------LTAELRECKMEIEDKKQE 961
Cdd:pfam12128 244 TKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDqwkekrdeLNGELSAADAAVAKDRSE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 962 LLEMD-QALKERNWELKQRAAQVTHLDmTIREHRGEMEQKIIKLEGTLEKSELELK--------ECNKQIESLNDKLQNA 1032
Cdd:pfam12128 324 LEALEdQHGAFLDADIETAAADQEQLP-SWQSELENLEERLKALTGKHQDVTAKYNrrrskikeQNNRDIAGIKDKLAKI 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1033 KEQL-REKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELrltrEQVQNSHTELAEARH 1111
Cdd:pfam12128 403 REARdRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELL----LQLENFDERIERARE 478
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 2462508639 1112 QQVQAQREIERLSSELEDMKQLSKEKDAHgnHLAEELGASKVREAHLEARMQ 1163
Cdd:pfam12128 479 EQEAANAEVERLQSELRQARKRRDQASEA--LRQASRRLEERQSALDELELQ 528
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
880-1240 |
4.33e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 47.58 E-value: 4.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 880 ELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKK 959
Cdd:pfam07888 45 ELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQR 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 960 QELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREK 1039
Cdd:pfam07888 125 AAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQR 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1040 EFIMLQNEQEISQLKKEIERTQQRMKEMESVMKE----QEQYIATQYKEAIdLGQELRLTREQVQNSHTELAEARHQQVQ 1115
Cdd:pfam07888 205 DTQVLQLQDTITTLTQKLTTAHRKEAENEALLEElrslQERLNASERKVEG-LGEELSSMAAQRDRTQAELHQARLQAAQ 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1116 AQREIERLSSEL-EDMKQLSKEKDAhgnhLAEELGASKVReahlearmqaeIKKLSAEVESLKEAYHMEMISHQENHAKW 1194
Cdd:pfam07888 284 LTLQLADASLALrEGRARWAQERET----LQQSAEADKDR-----------IEKLSAELQRLEERLQEERMEREKLEVEL 348
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 2462508639 1195 KISADSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVI 1240
Cdd:pfam07888 349 GREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQELLEYI 394
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
706-996 |
4.34e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 47.93 E-value: 4.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 706 KEKFEKQLKKKSEEVyclqKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQK 785
Cdd:COG2433 349 KNKFERVEKKVPPDV----DRDEVKARVIRGLSIEEALEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVER 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 786 QRESSAEKLRKMEEKCESAAH-EADLKRqkvieltgtARQVKIEMDQYKEELSKMEKEIMHLKRDgenkamhLSQLDMIL 864
Cdd:COG2433 425 LEAEVEELEAELEEKDERIERlERELSE---------ARSEERREIRKDREISRLDREIERLERE-------LEEERERI 488
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 865 DqtktELEKKTNAVKELEKLQHSTETELT---EALQKREVLETE------------LQNAHGELKSTLRQLQEL--RDVL 927
Cdd:COG2433 489 E----ELKRKLERLKELWKLEHSGELVPVkvvEKFTKEAIRRLEeeyglkegdvvyLRDASGAGRSTAELLAEAgpRAVI 564
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462508639 928 QKAQLSlEEKYTTIKDLT-AELRECKMEIEDK------KQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGE 996
Cdd:COG2433 565 VPGELS-EAADEVLFEEGiPVLPAEDVTIQEVddlavvDEEELEAAIEDWEERAEERRREKKAEMLERLISEYRAE 639
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
863-1254 |
5.08e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 47.73 E-value: 5.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 863 ILDQTKTELEKKTNAVKELEklqhstETELTEALQKrevLETELQNAHGELKSTLRQLQELRDVLQKAQLSL---EEKYT 939
Cdd:PRK02224 181 VLSDQRGSLDQLKAQIEEKE------EKDLHERLNG---LESELAELDEEIERYEEQREQARETRDEADEVLeehEERRE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 940 TIKDLTAELRECKMEIEDKKQEllemDQALKERnwelkqraaqvthldmtIREHRGEMEQKIIKLEGTLEKSELELKEcN 1019
Cdd:PRK02224 252 ELETLEAEIEDLRETIAETERE----REELAEE-----------------VRDLRERLEELEEERDDLLAEAGLDDAD-A 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1020 KQIESLNDKLQNAKEQLREKefiMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQyiatqykEAIDLGQELRLTREQV 1099
Cdd:PRK02224 310 EAVEARREELEDRDEELRDR---LEECRVAAQAHNEEAESLREDADDLEERAEELRE-------EAAELESELEEAREAV 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1100 QNSHTELAEARhqqvqaqREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVREAHLEARMQaEIKKLSAEVESLKEA 1179
Cdd:PRK02224 380 EDRREEIEELE-------EEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLR-TARERVEEAEALLEA 451
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462508639 1180 YHMEMISHQenhakwkISADSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEA--LLTKGENV 1254
Cdd:PRK02224 452 GKCPECGQP-------VEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIerLEERREDL 521
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
170-348 |
5.13e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 47.47 E-value: 5.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 170 ILEEQIINLEAEVsaqDKVLREAENKLEQsqkmviEKEQSLQESKEECIKLKvdlleqtkqgkraerqrnealynaEELS 249
Cdd:PRK12704 28 IAEAKIKEAEEEA---KRILEEAKKEAEA------IKKEALLEAKEEIHKLR------------------------NEFE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 250 KAFQQYKKKVAEKLEKVQAEEEILERNLTNCEKENKRLQERcglyKSELEILKEKLRQLKEEnnngKEKLRIMAVKTSEV 329
Cdd:PRK12704 75 KELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKK----EKELEQKQQELEKKEEE----LEELIEEQLQELER 146
|
170 180
....*....|....*....|..
gi 2462508639 330 MAQLT--ESRQSIL-KLESELE 348
Cdd:PRK12704 147 ISGLTaeEAKEILLeKVEEEAR 168
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
996-1179 |
5.93e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.75 E-value: 5.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 996 EMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQE 1075
Cdd:COG3883 20 AKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSG 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1076 -------------------------QYIATQYKEAID----LGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSE 1126
Cdd:COG3883 100 gsvsyldvllgsesfsdfldrlsalSKIADADADLLEelkaDKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAE 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2462508639 1127 LED-MKQLSKEKDAHGNHLAEELGASKVREAHLEARMQAEIKKLSAEVESLKEA 1179
Cdd:COG3883 180 QEAlLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAA 233
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
111-957 |
6.25e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.42 E-value: 6.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 111 QEIKSLREKLNKLRQ----QNACLVTQNHSLMTKFESIHFElTQSRAKVSMLESaQQQAASVPILEEQIINLEAEVSAQD 186
Cdd:pfam15921 85 HQVKDLQRRLNESNElhekQKFYLRQSVIDLQTKLQEMQME-RDAMADIRRRES-QSQEDLRNQLQNTVHELEAAKCLKE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 187 KVLREAENKLEQSQKMVIEKEQSLQESKeeciKLKVDLLEQTkqGKRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKV 266
Cdd:pfam15921 163 DMLEDSNTQIEQLRKMMLSHEGVLQEIR----SILVDFEEAS--GKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYL 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 267 QAEEEILERNLTNCEKENK------------RLQERCGLYKSELEILKEKLRQLKEENNNGKEKLRIMAV----KTSEVM 330
Cdd:pfam15921 237 KGRIFPVEDQLEALKSESQnkielllqqhqdRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEqarnQNSMYM 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 331 AQLTESRQSILKLESELENKDEILRDKFslmnenRELKVRVAAQNERLDLCQQEIESSRVELRSLEKIISQLPLKRELFG 410
Cdd:pfam15921 317 RQLSDLESTVSQLRSELREAKRMYEDKI------EELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKRE 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 411 FKSYLSKYQMSSFSNKEdrcigccEANKLVISDLRIKLAIKEAEIQKLHANLTA------NQLSQSLITCNDSQES-SKL 483
Cdd:pfam15921 391 KELSLEKEQNKRLWDRD-------TGNSITIDHLRRELDDRNMEVQRLEALLKAmksecqGQMERQMAAIQGKNESlEKV 463
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 484 SSLETepvklgghQVESVKDQ-----NQHTMNKQYEKERQRLVTGI-EELRTKLIQIEAENSDLKVNMAHRTSQFQLIQ- 556
Cdd:pfam15921 464 SSLTA--------QLESTKEMlrkvvEELTAKKMTLESSERTVSDLtASLQEKERAIEATNAEITKLRSRVDLKLQELQh 535
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 557 -----EELLEKASNSSKLESEMTKKCSQLLTLEKQLEE--KIVAYSSIAAKNAELEQelmleAQLEKKDQQFKEQEKTMS 629
Cdd:pfam15921 536 lknegDHLRNVQTECEALKLQMAEKDKVIEILRQQIENmtQLVGQHGRTAGAMQVEK-----AQLEKEINDRRLELQEFK 610
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 630 MLQQDiicKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEETikvrQLDSALEICKEElvlhLNQLEGNKEKF 709
Cdd:pfam15921 611 ILKDK---KDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERD----QLLNEVKTSRNE----LNSLSEDYEVL 679
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 710 EKQLKKKSEEVYCLQKELKIKNHSLQETSEQNvilqhtlqqqqqmlqQETIRNGELEDTQT-KLEKQVSKLEQELQKQRE 788
Cdd:pfam15921 680 KRNFRNKSEEMETTTNKLKMQLKSAQSELEQT---------------RNTLKSMEGSDGHAmKVAMGMQKQITAKRGQID 744
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 789 SSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTK 868
Cdd:pfam15921 745 ALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQ 824
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 869 TELEKKTNAVKELeKLQHSTETELTE--------ALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTT 940
Cdd:pfam15921 825 DIIQRQEQESVRL-KLQHTLDVKELQgpgytsnsSMKPRLLQPASFTRTHSNVPSSQSTASFLSHHSRKTNALKEDPTRD 903
|
890
....*....|....*..
gi 2462508639 941 IKDLTAELRECKMEIED 957
Cdd:pfam15921 904 LKQLLQELRSVINEEPT 920
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
533-1109 |
6.44e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.27 E-value: 6.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 533 QIEAENSDLKVNMAHRTSQFQliqeelleKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMLEA 612
Cdd:TIGR00618 308 QAQRIHTELQSKMRSRAKLLM--------KRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQ 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 613 QLEKKDQQ---FKEQEKTMSMLQQDIICKQHHLESLDRL-------LTESKGEMKKENMKKDEALKALQNQVSEETIKVR 682
Cdd:TIGR00618 380 HIHTLQQQkttLTQKLQSLCKELDILQREQATIDTRTSAfrdlqgqLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKI 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 683 QLDSALEICKEELvlhlnQLEGNKEKFEKQLKKKSEEVYCLQKELKiknhSLQETSEQNVILQHTLQQQQQMLQQETIRN 762
Cdd:TIGR00618 460 HLQESAQSLKERE-----QQLQTKEQIHLQETRKKAVVLARLLELQ----EEPCPLCGSCIHPNPARQDIDNPGPLTRRM 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 763 GELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEAdLKRQKVIELTGTARQVKIEMDQYKEELSKMEKE 842
Cdd:TIGR00618 531 QRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILT-QCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDM 609
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 843 IMHLKRDGENK---AMHLSQLDMILDQTKTELEKKTNAVK--ELEKLQHSTETELTEALQKREVLETELQNAHGELKSTL 917
Cdd:TIGR00618 610 LACEQHALLRKlqpEQDLQDVRLHLQQCSQELALKLTALHalQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEK 689
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 918 RQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEM 997
Cdd:TIGR00618 690 EQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEE 769
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 998 EQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREK-EFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEqeq 1076
Cdd:TIGR00618 770 VTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEiPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGE--- 846
|
570 580 590
....*....|....*....|....*....|...
gi 2462508639 1077 yIATQYKEAIDLGQELRLTREQVQNSHTELAEA 1109
Cdd:TIGR00618 847 -ITHQLLKYEECSKQLAQLTQEQAKIIQLSDKL 878
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
894-1098 |
6.90e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.93 E-value: 6.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 894 EALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTtikDLTAELRECKMEIEDKKQELLEMDQALKERN 973
Cdd:PHA02562 178 ELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYD---ELVEEAKTIKAEIEELTDELLNLVMDIEDPS 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 974 WELKQRAAQVTHLDMTIREHRGEME------------QKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEqlREKEF 1041
Cdd:PHA02562 255 AALNKLNTAAAKIKSKIEQFQKVIKmyekggvcptctQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEE--IMDEF 332
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462508639 1042 IMLQNEQ-----EISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQ 1098
Cdd:PHA02562 333 NEQSKKLlelknKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKT 394
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
991-1088 |
7.24e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 47.16 E-value: 7.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 991 REHRGEMEQKIIKLEGTLEK-----SEL--ELKECNKQIESLNDKLQNAKEQLREKefimLQNEQEISQLKKEIERTQQR 1063
Cdd:COG2433 405 ERELTEEEEEIRRLEEQVERleaevEELeaELEEKDERIERLERELSEARSEERRE----IRKDREISRLDREIERLERE 480
|
90 100
....*....|....*....|....*
gi 2462508639 1064 MKEMESVMKEQEQYIAtQYKEAIDL 1088
Cdd:COG2433 481 LEEERERIEELKRKLE-RLKELWKL 504
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1007-1251 |
1.13e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1007 TLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAI 1086
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1087 DLGQELrltREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVREAHLEARmQAEI 1166
Cdd:COG4942 101 AQKEEL---AELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAE-RAEL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1167 KKLSAEVESLKEAYHMEMishqenhakwkisaDSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEA 1246
Cdd:COG4942 177 EALLAELEEERAALEALK--------------AERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
....*
gi 2462508639 1247 LLTKG 1251
Cdd:COG4942 243 TPAAG 247
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
710-1236 |
1.14e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 46.35 E-value: 1.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 710 EKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTlqqqqqmlqqetirngELEDTQ-TKLEKQVSKLEQELQKQRE 788
Cdd:pfam10174 198 EVLLDQKEKENIHLREELHRRNQLQPDPAKTKALQTVI----------------EMKDTKiSSLERNIRDLEDEVQMLKT 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 789 SSaekLRKMEEkcesaaHEADLKRQKVIEltGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTK 868
Cdd:pfam10174 262 NG---LLHTED------REEEIKQMEVYK--SHSKFMKNKIDQLKQELSKKESELLALQTKLETLTNQNSDCKQHIEVLK 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 869 TELEKKTNAVKELEKLQHSTETELTEA---LQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKyttIKDLT 945
Cdd:pfam10174 331 ESLTAKEQRAAILQTEVDALRLRLEEKesfLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKK---IENLQ 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 946 AELReckmeieDKKQELLEmdqaLKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEgtlEKSELELKECNKQIESL 1025
Cdd:pfam10174 408 EQLR-------DKDKQLAG----LKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLK---EQREREDRERLEELESL 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1026 NDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTRE-------- 1097
Cdd:pfam10174 474 KKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAHNaeeavrtn 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1098 -----QVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLaeelgASKVREAHLEARMQAEIKKLSAE 1172
Cdd:pfam10174 554 peindRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAEL-----ESLTLRQMKEQNKKVANIKHGQQ 628
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462508639 1173 VESLKEAYHMEMISHQENHAKwkisADSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDR 1236
Cdd:pfam10174 629 EMKKKGAQLLEEARRREDNLA----DNSQQLQLEELMGALEKTRQELDATKARLSSTQQSLAEK 688
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
686-1250 |
1.16e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.50 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 686 SALEICKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSE-----QNVILQHTLQQQQQMLQQETI 760
Cdd:TIGR00618 204 QLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKkqqllKQLRARIEELRAQEAVLEETQ 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 761 RNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQkviELTGTARQVKIEMDQYKEELSKME 840
Cdd:TIGR00618 284 ERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQ---QSSIEEQRRLLQTLHSQEIHIRDA 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 841 KEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAV-KELEKLQHSTETELTEaLQKREVLETELQNAHGELKSTLRQ 919
Cdd:TIGR00618 361 HEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLcKELDILQREQATIDTR-TSAFRDLQGQLAHAKKQQELQQRY 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 920 LQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQ 999
Cdd:TIGR00618 440 AELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQD 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1000 KIIK--LEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQY 1077
Cdd:TIGR00618 520 IDNPgpLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDL 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1078 IATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHgnhlaeELGASKVREAH 1157
Cdd:TIGR00618 600 TEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVRE------HALSIRVLPKE 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1158 LEARMQAEIKKLSAEVESLKE-----AYHMEMISHQENHAK--------WKISADSQKSSVQQLNEQLEKAKLELEEAQD 1224
Cdd:TIGR00618 674 LLASRQLALQKMQSEKEQLTYwkemlAQCQTLLRELETHIEeydrefneIENASSSLGSDLAAREDALNQSLKELMHQAR 753
|
570 580
....*....|....*....|....*.
gi 2462508639 1225 TVSNLHQQVQDRNEVIEAANEALLTK 1250
Cdd:TIGR00618 754 TVLKARTEAHFNNNEEVTAALQTGAE 779
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
147-972 |
1.18e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.50 E-value: 1.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 147 ELTQSRAKVSMLESAQQQAASVPILEEQIINLEAEVSAQDKVLREAENKLEQSQKMVIEKEQSLQESKEECIKLKVDLLE 226
Cdd:pfam02463 220 ELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELK 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 227 QTK-QGKRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQAEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKL 305
Cdd:pfam02463 300 SELlKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKK 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 306 RQLKEENNNGKEKLRIMA------VKTSEVMAQLTESRQSILKLESELENKDEILRDKFSLMNENRELKVRVAAQNERLD 379
Cdd:pfam02463 380 KLESERLSSAAKLKEEELelkseeEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELK 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 380 LCQQEIESSRVELRSLEKIISQLPLKRELfgfksYLSKYQMSSFSNKEDRCIGCCEANKLVISDLRIKLAIKEAEIQKLH 459
Cdd:pfam02463 460 LLKDELELKKSEDLLKETQLVKLQEQLEL-----LLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDL 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 460 ANLTANQLSQSLITCNDSQESSKLSSLETEPVKLGGHQVESVKDQNQHTMNKQYEKERQRLVTGIEELRTKLIQIEAENS 539
Cdd:pfam02463 535 GVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLE 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 540 DLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKcSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMLEAQLEKKDQ 619
Cdd:pfam02463 615 ADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKG-VSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEE 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 620 QFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSALEICKEELVLHL 699
Cdd:pfam02463 694 ILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKE 773
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 700 NQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQqmlqqetirngeLEDTQTKLEKQVSKL 779
Cdd:pfam02463 774 KELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQ------------EEKIKEEELEELALE 841
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 780 EQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEImhlkrdgenkamhLSQ 859
Cdd:pfam02463 842 LKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEE-------------SQK 908
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 860 LDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYT 939
Cdd:pfam02463 909 LNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEE 988
|
810 820 830
....*....|....*....|....*....|...
gi 2462508639 940 TIKDLTAELRECKMEIEDKKQELLEMDQALKER 972
Cdd:pfam02463 989 RYNKDELEKERLEEEKKKLIRAIIEETCQRLKE 1021
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
772-1180 |
1.25e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 1.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 772 LEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGE 851
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 852 NKAMH--LSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQK 929
Cdd:COG4717 127 LLPLYqeLEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQ 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 930 AQLSLEEKYTTIKDLTAELREcKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTI------------------- 990
Cdd:COG4717 207 RLAELEEELEEAQEELEELEE-ELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGsllsliltiagvlflvlgl 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 991 --------REHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIER--T 1060
Cdd:COG4717 286 lallflllAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEElqL 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1061 QQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEAR--HQQVQAQREIERLSSELEDMKQLSKEKD 1138
Cdd:COG4717 366 EELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLgeLEELLEALDEEELEEELEELEEELEELE 445
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 2462508639 1139 AHGNHLAEELGASKVREAHLE-----ARMQAEIKKLSAEVESLKEAY 1180
Cdd:COG4717 446 EELEELREELAELEAELEQLEedgelAELLQELEELKAELRELAEEW 492
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
894-1135 |
1.33e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 46.44 E-value: 1.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 894 EALQKREVLETELQNAHGELKSTLRQLqelrDVLQKAQLSLEEKYTTIKDLTAELRECKMEIED-KKQELLEMDQAL-KE 971
Cdd:PRK11281 46 DALNKQKLLEAEDKLVQQDLEQTLALL----DKIDRQKEETEQLKQQLAQAPAKLRQAQAELEAlKDDNDEETRETLsTL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 972 RNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQN---AKEQLREKEFIMLQNEQ 1048
Cdd:PRK11281 122 SLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGgkvGGKALRPSQRVLLQAEQ 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1049 -----EISQLKKEIERTQQrmkeMESVMKEQEQYIAtqykEAID-LGQELRLTREQVQNSHTELAEARHQQVQAQREIER 1122
Cdd:PRK11281 202 allnaQNDLQRKSLEGNTQ----LQDLLQKQRDYLT----ARIQrLEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAAR 273
|
250
....*....|....*....
gi 2462508639 1123 ------LSSELEDMKQLSK 1135
Cdd:PRK11281 274 iqanplVAQELEINLQLSQ 292
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
864-1073 |
1.65e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.78 E-value: 1.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 864 LDQTKTELEKKTNAVKELeKLQH---STETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEkyTT 940
Cdd:COG3206 184 LPELRKELEEAEAALEEF-RQKNglvDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPE--LL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 941 IKDLTAELREckmEIEDKKQELLEMDQALKERNWELKQRAAQvthldmtIREHRGEMEQKIIKLegtLEKSELELKECNK 1020
Cdd:COG3206 261 QSPVIQQLRA---QLAELEAELAELSARYTPNHPDVIALRAQ-------IAALRAQLQQEAQRI---LASLEAELEALQA 327
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2462508639 1021 QIESLNDKLQNAKEQLREkefiMLQNEQEISQLKKEIERTQQRMKEMESVMKE 1073
Cdd:COG3206 328 REASLQAQLAQLEARLAE----LPELEAELRRLEREVEVARELYESLLQRLEE 376
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
109-728 |
1.71e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.20 E-value: 1.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 109 VDQEIKSLREKLNKLRQQNACLVTQNHSLMTKFESIHFELTQSRAKVSML-ESAQQQAASVPILEEQIINLEAEVSAQDK 187
Cdd:TIGR02168 300 LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELkEELESLEAELEELEAELEELESRLEELEE 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 188 VLREAENKL--EQSQKMVIEKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNEALYNAEELSKafqqykkkVAEKLEK 265
Cdd:TIGR02168 380 QLETLRSKVaqLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEE--------LEEELEE 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 266 VQAEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKLRQLK--EENNNGKEKLRIMAVKTSEVMAQLTESRQSILKL 343
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLErlQENLEGFSEGVKALLKNQSGLSGILGVLSELISV 531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 344 ESELE----------------NKDEILRDKFSLMNENRELKV--------RVAAQNERLDLCQQEIESSRVELRSLEKII 399
Cdd:TIGR02168 532 DEGYEaaieaalggrlqavvvENLNAAKKAIAFLKQNELGRVtflpldsiKGTEIQGNDREILKNIEGFLGVAKDLVKFD 611
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 400 SQLP----------------------LKRELFGF-------KSYLSKYQMSSFSNKEDRCIGCCEANklvISDLRIKLAI 450
Cdd:TIGR02168 612 PKLRkalsyllggvlvvddldnalelAKKLRPGYrivtldgDLVRPGGVITGGSAKTNSSILERRRE---IEELEEKIEE 688
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 451 KEAEIQKLHANLTANQLSQSLITCN------DSQESSKLSSLETEPVKLGGHQVESVKDQNQHTM--NKQYEKERQRLVT 522
Cdd:TIGR02168 689 LEEKIAELEKALAELRKELEELEEEleqlrkELEELSRQISALRKDLARLEAEVEQLEERIAQLSkeLTELEAEIEELEE 768
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 523 GIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNA 602
Cdd:TIGR02168 769 RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE 848
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 603 ELEQELM--------LEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLteskGEMKKENMKKDEALKALQNQV 674
Cdd:TIGR02168 849 ELSEDIEslaaeieeLEELIEELESELEALLNERASLEEALALLRSELEELSEEL----RELESKRSELRRELEELREKL 924
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*....
gi 2462508639 675 SE-----ETIKVRqLDSALEICKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELK 728
Cdd:TIGR02168 925 AQlelrlEGLEVR-IDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
996-1148 |
2.45e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.15 E-value: 2.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 996 EMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRM------KEMES 1069
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLgnvrnnKEYEA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1070 VMKEqeqyIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELE--------DMKQLSKEKDAHG 1141
Cdd:COG1579 94 LQKE----IESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDeelaeleaELEELEAEREELA 169
|
....*..
gi 2462508639 1142 NHLAEEL 1148
Cdd:COG1579 170 AKIPPEL 176
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
902-1059 |
2.66e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.15 E-value: 2.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 902 LETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKE--RNWELKQR 979
Cdd:COG1579 15 LDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNvrNNKEYEAL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 980 AAQVTHLdmtiREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREkefIMLQNEQEISQLKKEIER 1059
Cdd:COG1579 95 QKEIESL----KRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDE---ELAELEAELEELEAEREE 167
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
781-982 |
2.93e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.82 E-value: 2.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 781 QELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQL 860
Cdd:COG3883 26 SELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSGGSVSYL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 861 DMILDQTK-TELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQlslEEKYT 939
Cdd:COG3883 106 DVLLGSESfSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQ---AEQEA 182
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2462508639 940 TIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQ 982
Cdd:COG3883 183 LLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAA 225
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
762-1039 |
2.97e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.21 E-value: 2.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 762 NGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEK 841
Cdd:pfam12128 631 NGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKR 710
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 842 EimHLKRDGENKAMHLSQLDMILDQTKTELEK-KTNAVKELEKLQHSTETELtEALQKREVLETELQNAHGELKSTLRQL 920
Cdd:pfam12128 711 E--ARTEKQAYWQVVEGALDAQLALLKAAIAArRSGAKAELKALETWYKRDL-ASLGVDPDVIAKLKREIRTLERKIERI 787
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 921 QELRDVLQKAQLSLEEKYTTIKD-LTAELRECKMEIEDKKQELLEMDQALKERNWEL-KQRAA---QVTHLDMTIREHRG 995
Cdd:pfam12128 788 AVRRQEVLRYFDWYQETWLQRRPrLATQLSNIERAISELQQQLARLIADTKLRRAKLeMERKAsekQQVRLSENLRGLRC 867
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 2462508639 996 EMEQ-KIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREK 1039
Cdd:pfam12128 868 EMSKlATLKEDANSEQAQGSIGERLAQLEDLKLKRDYLSESVKKY 912
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
891-1242 |
3.15e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 45.33 E-value: 3.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 891 ELTEALQKREVLETELQNAHGEL---KSTLRQ----------LQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIED 957
Cdd:COG3096 314 ELEELSARESDLEQDYQAASDHLnlvQTALRQqekieryqedLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDS 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 958 KKQELLEMDQALKErnweLKQRAAQVthldmtirehrgemeQKIIKlegTLEKSELELKECNKQIESLNDKLQNAKEQLR 1037
Cdd:COG3096 394 LKSQLADYQQALDV----QQTRAIQY---------------QQAVQ---ALEKARALCGLPDLTPENAEDYLAAFRAKEQ 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1038 EKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQY-KEAIDLGQELRLTREQVQNSHTELAEARhQQVQA 1116
Cdd:COG3096 452 QATEEVLELEQKLSVADAARRQFEKAYELVCKIAGEVERSQAWQTaRELLRRYRSQQALAQRLQQLRAQLAELE-QRLRQ 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1117 QREIERLSSELEdmKQLSKEKDAhgnhlAEELgaskvreAHLEARMQAEIKKLSAEVESLKEAyHMEMiSHQENHAKWKI 1196
Cdd:COG3096 531 QQNAERLLEEFC--QRIGQQLDA-----AEEL-------EELLAELEAQLEELEEQAAEAVEQ-RSEL-RQQLEQLRARI 594
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 2462508639 1197 SADSQKSSV------------QQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEA 1242
Cdd:COG3096 595 KELAARAPAwlaaqdalerlrEQSGEALADSQEVTAAMQQLLEREREATVERDELAAR 652
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
774-979 |
3.62e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 3.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 774 KQVSKLEQELQKQRESsAEKLRKMEEKCESAAH-EADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGEN 852
Cdd:COG4913 235 DDLERAHEALEDAREQ-IELLEPIRELAERYAAaRERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELER 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 853 KAMHLSQLDMILDQTKTELEK-KTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQ 931
Cdd:COG4913 314 LEARLDALREELDELEAQIRGnGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALL 393
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2462508639 932 LSLEEKyttIKDLTAELRECKMEIEDKKQELlemDQALKERNwELKQR 979
Cdd:COG4913 394 EALEEE---LEALEEALAEAEAALRDLRREL---RELEAEIA-SLERR 434
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
553-1136 |
3.79e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.04 E-value: 3.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 553 QLIQEELLEKASNSSKLESEMTKKcsqlLTLEKQLEEKIVAYSSIAAKNAELEQELMLEAQLEKKDQQFKEQEKTMSMlq 632
Cdd:TIGR00606 397 TLVIERQEDEAKTAAQLCADLQSK----ERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSS-- 470
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 633 QDIICKQHHLESLDRLLTESKGEMKKENMKKDEalKALQNQVSEETIKVRQLDSALEickeelvlhlnQLEGNKEKFEKQ 712
Cdd:TIGR00606 471 DRILELDQELRKAERELSKAEKNSLTETLKKEV--KSLQNEKADLDRKLRKLDQEME-----------QLNHHTTTRTQM 537
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 713 LKKKSEEVYCLQKELKIK-NHSLQETSEQNVILQHTLQQQQQMLQQETIRngELEDTQTKLEKQVSKLEQ---ELQKQRE 788
Cdd:TIGR00606 538 EMLTKDKMDKDEQIRKIKsRHSDELTSLLGYFPNKKQLEDWLHSKSKEIN--QTRDRLAKLNKELASLEQnknHINNELE 615
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 789 SSAEKLRKMEEK----CESAAHEADLKRQKViELTGTARQVKI------EMDQYKEELSKMEKEIMHL-KRDGENKAmhl 857
Cdd:TIGR00606 616 SKEEQLSSYEDKlfdvCGSQDEESDLERLKE-EIEKSSKQRAMlagataVYSQFITQLTDENQSCCPVcQRVFQTEA--- 691
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 858 sQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEK 937
Cdd:TIGR00606 692 -ELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQ 770
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 938 YTTIKDLTAELRECKMEIEDKK-QELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELElk 1016
Cdd:TIGR00606 771 ETLLGTIMPEEESAKVCLTDVTiMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELN-- 848
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1017 ecNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTR 1096
Cdd:TIGR00606 849 --RKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKE 926
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 2462508639 1097 EQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKE 1136
Cdd:TIGR00606 927 ELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQD 966
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1050-1252 |
3.84e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.93 E-value: 3.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1050 ISQLKKEIERTQQRMKEMES-------VMKEQEQYI------ATQYKEAIDLGQELRLTREQV-----QNSHTELAEARH 1111
Cdd:COG1196 167 ISKYKERKEEAERKLEATEEnlerledILGELERQLeplerqAEKAERYRELKEELKELEAELlllklRELEAELEELEA 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1112 QQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVREAHLEARMQAEIKKLSAEVESLKEAyhmemishQENH 1191
Cdd:COG1196 247 ELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL--------EERL 318
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462508639 1192 AKWKISADSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLTKGE 1252
Cdd:COG1196 319 EELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE 379
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
763-1132 |
4.28e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 44.50 E-value: 4.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 763 GELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKE 842
Cdd:pfam07888 44 AELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQ 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 843 imhlkrdgenKAMHLSQLDMILDQTKTELEKKTNAVKELEKLqhsTETELTEALQKREVlETELQNAHGELKSTLRQLQE 922
Cdd:pfam07888 124 ----------RAAHEARIRELEEDIKTLTQRVLERETELERM---KERAKKAGAQRKEE-EAERKQLQAKLQQTEEELRS 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 923 LRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNwELKQRAAQVTHLDMTIREHRGEMEQKII 1002
Cdd:pfam07888 190 LSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELR-SLQERLNASERKVEGLGEELSSMAAQRD 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1003 KLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQeisQLKKEIERTQQRMKEMESVMKEQEqyiATQY 1082
Cdd:pfam07888 269 RTQAELHQARLQAAQLTLQLADASLALREGRARWAQERETLQQSAE---ADKDRIEKLSAELQRLEERLQEER---MERE 342
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1083 KEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQ 1132
Cdd:pfam07888 343 KLEVELGREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQELLE 392
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
610-1101 |
4.61e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.78 E-value: 4.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 610 LEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDR---LLTESKGEMKKENMKKDEALKALQNQVSEETIKVR---Q 683
Cdd:pfam01576 101 MQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEdilLLEDQNSKLSKERKLLEERISEFTSNLAEEEEKAKslsK 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 684 LDSALEICKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNG 763
Cdd:pfam01576 181 LKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKN 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 764 ELEDTQTKLEKQVSKLEQELQKQR--ESSAEKLRK------------MEEKCESAAHEADLKRQKVIELTGTARQVKIEM 829
Cdd:pfam01576 261 NALKKIRELEAQISELQEDLESERaaRNKAEKQRRdlgeelealkteLEDTLDTTAAQQELRSKREQEVTELKKALEEET 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 830 DQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNavkELEKLQHSTETELTEALQKREVLETELQNA 909
Cdd:pfam01576 341 RSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENA---ELQAELRTLQQAKQDSEHKRKKLEGQLQEL 417
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 910 HGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKErnwELKQRAAQVTHLDMT 989
Cdd:pfam01576 418 QARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQE---ETRQKLNLSTRLRQL 494
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 990 IREHRGEMEQkiiklegtLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMES 1069
Cdd:pfam01576 495 EDERNSLQEQ--------LEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAA 566
|
490 500 510
....*....|....*....|....*....|..
gi 2462508639 1070 VMKEQEQYIATQYKEAIDLGQELRLTREQVQN 1101
Cdd:pfam01576 567 AYDKLEKTKNRLQQELDDLLVDLDHQRQLVSN 598
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
922-1246 |
5.79e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.28 E-value: 5.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 922 ELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKqELLEMDQALKERNWELKQRAAQVTHldmTIREHRGEMEQKI 1001
Cdd:PRK03918 145 ESREKVVRQILGLDDYENAYKNLGEVIKEIKRRIERLE-KFIKRTENIEELIKEKEKELEEVLR---EINEISSELPELR 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1002 IKLEGtLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIAtq 1081
Cdd:PRK03918 221 EELEK-LEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIK-- 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1082 ykeaidLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDahgnHLAEELGASKVREAHLEar 1161
Cdd:PRK03918 298 ------LSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLK----ELEKRLEELEERHELYE-- 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1162 mqaEIKKLSAEVESLKeayhmemishqenhakwKISADSQKSSVQQLNEQLEKAKLELEEAQDTV----SNLHQQVQDRN 1237
Cdd:PRK03918 366 ---EAKAKKEELERLK-----------------KRLTGLTPEKLEKELEELEKAKEEIEEEISKItariGELKKEIKELK 425
|
....*....
gi 2462508639 1238 EVIEAANEA 1246
Cdd:PRK03918 426 KAIEELKKA 434
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
884-1136 |
6.95e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 6.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 884 LQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEK--YTTIKDLTAELRECKMEIEDKKQE 961
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKllLQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 962 LLEMDQALKERNWELKQRAAQVThldmtirehRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREkef 1041
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQSPV---------IQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQ--- 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1042 imlQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIAtqykeaidlgqelrltreqvqnshtELAEARHQQVQAQREIE 1121
Cdd:COG3206 310 ---EAQRILASLEAELEALQAREASLQAQLAQLEARLA-------------------------ELPELEAELRRLEREVE 361
|
250
....*....|....*
gi 2462508639 1122 RLSSELEDMKQLSKE 1136
Cdd:COG3206 362 VARELYESLLQRLEE 376
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
232-1066 |
7.57e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.81 E-value: 7.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 232 KRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQAEEEILERNLTnCEKENKRLQERCGLYKSELEILKEKLRQLKEE 311
Cdd:pfam02463 181 ETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLL-YLDYLKLNEERIDLLQELLRDEQEEIESSKQE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 312 NNNGKEKLRIMAVKTSEVMAQLTESRQSILKLESELENKDEILRDKFSLMNENRELKVRVAAQNERLDLCQQEIESSRVE 391
Cdd:pfam02463 260 IEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEE 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 392 LRSLEKIISQLPLKRELfgFKSYLSKYQMSSFSNKEDRCIGCCEANKLVISDLRIKLAIKEAEIQKLHANLTANQLSQSL 471
Cdd:pfam02463 340 LEKELKELEIKREAEEE--EEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQL 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 472 ITCNDSQESSKLSSLETEPVKLGGHQVESVKDQNQHTMNKQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQ 551
Cdd:pfam02463 418 EDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEE 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 552 FQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMLEAQLEKKDQQFKEQEKTMSML 631
Cdd:pfam02463 498 RSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGA 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 632 QQDIICKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSALEICKEELVLHLNQLEGNKEKFEK 711
Cdd:pfam02463 578 RKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEG 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 712 QLKKKSEEVycLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRESSA 791
Cdd:pfam02463 658 LAEKSEVKA--SLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKIN 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 792 EKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTEL 871
Cdd:pfam02463 736 EELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAE 815
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 872 EKKtnavKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELREC 951
Cdd:pfam02463 816 LLE----EEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESK 891
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 952 KMEIEDKKQELLEMDQalKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKEcnKQIESLNDKLQN 1031
Cdd:pfam02463 892 EEKEKEEKKELEEESQ--KLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNK--EEEEERNKRLLL 967
|
810 820 830
....*....|....*....|....*....|....*
gi 2462508639 1032 AKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKE 1066
Cdd:pfam02463 968 AKEELGKVNLMAIEEFEEKEERYNKDELEKERLEE 1002
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
180-402 |
7.99e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 7.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 180 AEVSAQDKVLREAENKLEQSQKMVIEKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNEALYNAEELSKAFQQYKKKV 259
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 260 AEKLEKVQAEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKLRQLKEENNNGKEKLRIMAVKTSEVMAQLTESRQS 339
Cdd:COG4942 93 AELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462508639 340 ILKLESELENKDEILRDKFSLMNENRELKVRVAAQNERLdlcQQEIESSRVELRSLEKIISQL 402
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAEL---AAELAELQQEAEELEALIARL 232
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
784-1108 |
8.82e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.57 E-value: 8.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 784 QKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEmdqyKEELSKMEKEIMHLKRDGENKAMHLSQLDMI 863
Cdd:pfam17380 286 ERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMD----RQAAIYAEQERMAMERERELERIRQEERKRE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 864 LDQTKT-ELEKKTNAVKELEKLQhstetelTEALQKREVLETELQNAhgelkstlrqlqelrdvlQKAQLSLEEKYTTIK 942
Cdd:pfam17380 362 LERIRQeEIAMEISRMRELERLQ-------MERQQKNERVRQELEAA------------------RKVKILEEERQRKIQ 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 943 DLTAELRECKMEIEDKKQELLEMDQALKERNWE-LKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQ 1021
Cdd:pfam17380 417 QQKVEMEQIRAEQEEARQREVRRLEEERAREMErVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKI 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1022 IESLNDKLQNA------KEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQY-IATQYKEAIDLGQELRL 1094
Cdd:pfam17380 497 LEKELEERKQAmieeerKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMrKATEERSRLEAMERERE 576
|
330
....*....|....
gi 2462508639 1095 TREQVQNSHTELAE 1108
Cdd:pfam17380 577 MMRQIVESEKARAE 590
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
996-1121 |
8.84e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 43.66 E-value: 8.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 996 EMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEfimlqnEQEISQLKKEIERTQQRMKEMesvmkEQE 1075
Cdd:PRK00409 531 ELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEA------QQAIKEAKKEADEIIKELRQL-----QKG 599
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 2462508639 1076 QYIATQYKEAIDlgqelrlTREQVQNSHTELAEARHQQVQAQREIE 1121
Cdd:PRK00409 600 GYASVKAHELIE-------ARKRLNKANEKKEKKKKKQKEKQEELK 638
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
582-1178 |
8.89e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.80 E-value: 8.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 582 TLEKQLEEKIVAYSSIAAKNAELEQELMLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRL-----LTESKGEM 656
Cdd:TIGR00618 223 VLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRArkaapLAAHIKAV 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 657 KKENMKKDEALKALQNQVSEETIKVRQLDSALeicKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQE 736
Cdd:TIGR00618 303 TQIEQQAQRIHTELQSKMRSRAKLLMKRAAHV---KQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQ 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 737 TSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVI 816
Cdd:TIGR00618 380 HIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKI 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 817 ELTGTARQVK--IEMDQYKEELSKMEKEImhlKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQhsteTELTE 894
Cdd:TIGR00618 460 HLQESAQSLKerEQQLQTKEQIHLQETRK---KAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLT----RRMQR 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 895 ALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQ---LSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKE 971
Cdd:TIGR00618 533 GEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQqsfSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLAC 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 972 RNWELKQRAAQVTHlDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNA-KEQLREKEFIMLQNE-QE 1049
Cdd:TIGR00618 613 EQHALLRKLQPEQD-LQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKeLLASRQLALQKMQSEkEQ 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1050 ISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELED 1129
Cdd:TIGR00618 692 LTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVT 771
|
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 2462508639 1130 MKQLSKEKdahgnhlaeelgaskvrEAHLEARMQAEIKKLSAEVESLKE 1178
Cdd:TIGR00618 772 AALQTGAE-----------------LSHLAAEIQFFNRLREEDTHLLKT 803
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
557-1252 |
9.20e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.81 E-value: 9.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 557 EELLEKASNSSKLESEMTKKCSQLLTLEKQLEEkivayssiAAKNAELEQELMLEAQLEKKDQQFKEQEKTMSMLQQDII 636
Cdd:pfam02463 176 KKLIEETENLAELIIDLEELKLQELKLKEQAKK--------ALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLR 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 637 CKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEetikvrqlDSALEICKEELVLHLNQLEGNKEKFEKQLKKK 716
Cdd:pfam02463 248 DEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEE--------LKLLAKEEEELKSELLKLERRKVDDEEKLKES 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 717 SEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRK 796
Cdd:pfam02463 320 EKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELEL 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 797 MEEKCESAAHEADLKRQKVIELtgtarqvKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTN 876
Cdd:pfam02463 400 KSEEEKEAQLLLELARQLEDLL-------KEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSED 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 877 AVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIkdltAELRECKMEIE 956
Cdd:pfam02463 473 LLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVA----VENYKVAISTA 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 957 DKKQELLEMDQALKERNwelKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQL 1036
Cdd:pfam02463 549 VIVEVSATADEVEERQK---LVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVV 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1037 REKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQA 1116
Cdd:pfam02463 626 EGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKE 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1117 QREIERLSS------ELEDMKQLSKEKDAHGNHLAEELGASKVREAHLEARMQAEIKKLSAEVESLKEAYHMEMISHQEN 1190
Cdd:pfam02463 706 QREKEELKKlkleaeELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEK 785
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462508639 1191 HAKWKISADSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLTKGE 1252
Cdd:pfam02463 786 LKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQK 847
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
190-950 |
1.28e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.00 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 190 REAENKLEQSQkmviEKEQSLQeskeeciklkvDLL-EQTKQGKRAERQRNEALyNAEELSKAFQQYKKKV-AEKLEKVQ 267
Cdd:COG1196 175 EEAERKLEATE----ENLERLE-----------DILgELERQLEPLERQAEKAE-RYRELKEELKELEAELlLLKLRELE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 268 AEEEILERNLTNCEKENKRLQERCGLYKSELEILKEKLRQLKEENNngkeklrimavktsEVMAQLTESRQSILKLESEL 347
Cdd:COG1196 239 AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELE--------------EAQAEEYELLAELARLEQDI 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 348 ENKDEILRDkfsLMNENRELKVRVAAQNERLDLCQQEIESSRVELRSLEKIISQLPLKRElfgfksylskyqmssfsnke 427
Cdd:COG1196 305 ARLEERRRE---LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELA-------------------- 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 428 drcigccEANKLVISDLRIKLAIKEAEIQKLHANLTANQLSQSLitcndsqessklssletepvklgghqvesvkdqnqh 507
Cdd:COG1196 362 -------EAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL------------------------------------ 398
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 508 tmnkqyEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQL 587
Cdd:COG1196 399 ------AAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 588 EEKIVAYSSIAAKNAELEQELMLEAQLEKKDQQFKEQEKTMSML-QQDIICKQHHLESLDRLLTESKGEmkkenmkkDEA 666
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLaGLRGLAGAVAVLIGVEAAYEAALE--------AAL 544
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 667 LKALQNQVSEETIKVRQLDSALEICKEELV--LHLNQLEGNKEKFEKQLKKKSEE----VYCLQKELKIKNHSLQETSEQ 740
Cdd:COG1196 545 AAALQNIVVEDDEVAAAAIEYLKAAKAGRAtfLPLDKIRARAALAAALARGAIGAavdlVASDLREADARYYVLGDTLLG 624
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 741 NVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTG 820
Cdd:COG1196 625 RTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEE 704
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 821 TARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKlqhstetELTEALQKRE 900
Cdd:COG1196 705 EERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELER-------ELERLEREIE 777
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*..
gi 2462508639 901 VLET-------ELQnahgELKSTLRQLQELRDVLQKAQLSLEEkytTIKDLTAELRE 950
Cdd:COG1196 778 ALGPvnllaieEYE----ELEERYDFLSEQREDLEEARETLEE---AIEEIDRETRE 827
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
812-1038 |
1.35e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 812 RQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRdgENKAMHLSQldmildQTKTELEKKTNAVKELEKLQhsteTE 891
Cdd:COG3206 167 ELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQ--KNGLVDLSE------EAKLLLQQLSELESQLAEAR----AE 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 892 LTEALQKREVLETELQNAHGELKSTLR--QLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELL-EMDQA 968
Cdd:COG3206 235 LAEAEARLAALRAQLGSGPDALPELLQspVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQqEAQRI 314
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 969 LKERNWELKQRAAQVTHLDMTIREHRGEMEQkiiklegtLEKSELELKECNKQIESLNDKLQNAKEQLRE 1038
Cdd:COG3206 315 LASLEAELEALQAREASLQAQLAQLEARLAE--------LPELEAELRRLEREVEVARELYESLLQRLEE 376
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
497-1172 |
1.57e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.79 E-value: 1.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 497 QVESVKDQNQHTMNKQyEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKK 576
Cdd:pfam05483 103 QKENKLQENRKIIEAQ-RKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLLKETCARSAEKTKKYEYEREET 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 577 CSQLLTLEKQLEEKIVAYSS--IAAKNAELEQELMLEAQLEK-------KDQQFKEQEKTMSMLQQDIICKQHHLESLDR 647
Cdd:pfam05483 182 RQVYMDLNNNIEKMILAFEElrVQAENARLEMHFKLKEDHEKiqhleeeYKKEINDKEKQVSLLLIQITEKENKMKDLTF 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 648 LLTESKGEMKKenmkKDEALKALQNQVSEETIKVRQLDSALEickeELVLHLNQLEGNKEKFEKQLKKKSEEVYCL--QK 725
Cdd:pfam05483 262 LLEESRDKANQ----LEEKTKLQDENLKELIEKKDHLTKELE----DIKMSLQRSMSTQKALEEDLQIATKTICQLteEK 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 726 ELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRN------GELEDTQTKLEKQVSKLEQ--ELQKQRESSAEKLRKM 797
Cdd:pfam05483 334 EAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQrlekneDQLKIITMELQKKSSELEEmtKFKNNKEVELEELKKI 413
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 798 EEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLdmildqtKTELEKKTNA 877
Cdd:pfam05483 414 LAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDL-------KTELEKEKLK 486
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 878 VKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQkaqlSLEEKYTTIKDltaelreckmEIED 957
Cdd:pfam05483 487 NIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIE----NLEEKEMNLRD----------ELES 552
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 958 KKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLR 1037
Cdd:pfam05483 553 VREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLN 632
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1038 EKEFIMLQNEQEISQLKKEIER-TQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAE----ARHQ 1112
Cdd:pfam05483 633 AYEIKVNKLELELASAKQKFEEiIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEmvalMEKH 712
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1113 QVQAQREIERLSSELEDMKqlSKEKDAHGNHLAEELGASKVREAHLEARMQAEIKKLSAE 1172
Cdd:pfam05483 713 KHQYDKIIEERDSELGLYK--NKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKE 770
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
764-1150 |
1.64e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.02 E-value: 1.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 764 ELEDTQTKLEKQVSKLEqELQKQRESSAEKLRKMEEKCESAAHE-ADLkrQKVIELTGTaRQVkiemdQYKEELSKMEKE 842
Cdd:COG3096 355 DLEELTERLEEQEEVVE-EAAEQLAEAEARLEAAEEEVDSLKSQlADY--QQALDVQQT-RAI-----QYQQAVQALEKA 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 843 imhlKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELE-KLQ----HSTETELTEALQKREVLETELQNAHGELKSTL 917
Cdd:COG3096 426 ----RALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEqKLSvadaARRQFEKAYELVCKIAGEVERSQAWQTARELL 501
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 918 RQLQELRDVLQKAQlSLEEKYttikdltAELREcKMEIEDKKQELLEmdqalkernwELKQRAAQVTHLDMTIREHRGEM 997
Cdd:COG3096 502 RRYRSQQALAQRLQ-QLRAQL-------AELEQ-RLRQQQNAERLLE----------EFCQRIGQQLDAAEELEELLAEL 562
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 998 EQkiiklegtlekselelkecnkQIESLNDKLQNAKEQLrekefimlqneqeiSQLKKEIERTQQRMKEMES------VM 1071
Cdd:COG3096 563 EA---------------------QLEELEEQAAEAVEQR--------------SELRQQLEQLRARIKELAArapawlAA 607
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462508639 1072 KEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARhQQVQAQREieRLSSELEDMKQLSKEKDAHGNHLAEELGA 1150
Cdd:COG3096 608 QDALERLREQSGEALADSQEVTAAMQQLLEREREATVER-DELAARKQ--ALESQIERLSQPGGAEDPRLLALAERLGG 683
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
924-1147 |
1.66e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 42.76 E-value: 1.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 924 RDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQaLKERNWELKQRAAQVT-HLDMTIREHRGEMEQKII 1002
Cdd:COG5022 853 RSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSISS-LKLVNLELESEIIELKkSLSSDLIENLEFKTELIA 931
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1003 KLEGTLEKSELEL-----KECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMesvmkeqeqy 1077
Cdd:COG5022 932 RLKKLLNNIDLEEgpsieYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKEL---------- 1001
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1078 iatqykeaidlgQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEE 1147
Cdd:COG5022 1002 ------------AELSKQYGALQESTKQLKELPVEVAELQSASKIISSESTELSILKPLQKLKGLLLLEN 1059
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
943-1250 |
1.81e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.63 E-value: 1.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 943 DLTAELREckmEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTI---REHRGEMeQKIIKLEGTLEKSELELKECN 1019
Cdd:COG3096 285 ERALELRR---ELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYqaaSDHLNLV-QTALRQQEKIERYQEDLEELT 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1020 KQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEmesvmkeqEQYIATQYKEAIdlgQELRLTREQV 1099
Cdd:COG3096 361 ERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDV--------QQTRAIQYQQAV---QALEKARALC 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1100 QNSHTELAEARHQQVQAQREIERLSSELEDMKQ-LSKEKDAHGNH-----LAEELGASKVRE-AHLEARMQ----AEIKK 1168
Cdd:COG3096 430 GLPDLTPENAEDYLAAFRAKEQQATEEVLELEQkLSVADAARRQFekayeLVCKIAGEVERSqAWQTARELlrryRSQQA 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1169 LSAEVESLKEAYH-MEMISHQENHAKwKISADSQKSSVQQLN--EQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANE 1245
Cdd:COG3096 510 LAQRLQQLRAQLAeLEQRLRQQQNAE-RLLEEFCQRIGQQLDaaEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLE 588
|
....*
gi 2462508639 1246 ALLTK 1250
Cdd:COG3096 589 QLRAR 593
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
763-1063 |
1.92e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 1.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 763 GELEDTQTKLEKQVSKLEqELQKQRESSAEKLRKMEEKCESAAHE-ADLKR------------QKVIELTGTARQVKIEM 829
Cdd:PRK04863 355 ADLEELEERLEEQNEVVE-EADEQQEENEARAEAAEEEVDELKSQlADYQQaldvqqtraiqyQQAVQALERAKQLCGLP 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 830 D-------QYKEELSKMEKEIMHLKRDGENKamhLSQLDMILDQTKTELEKKTNAVKELEKLQ-HSTETELTEALQKREV 901
Cdd:PRK04863 434 DltadnaeDWLEEFQAKEQEATEELLSLEQK---LSVAQAAHSQFEQAYQLVRKIAGEVSRSEaWDVARELLRRLREQRH 510
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 902 LETELQ---NAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQ 978
Cdd:PRK04863 511 LAEQLQqlrMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQ 590
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 979 RAAQVTHLDMTirehrgemEQKIIKLEGTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIE 1058
Cdd:PRK04863 591 LQARIQRLAAR--------APAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIE 662
|
....*
gi 2462508639 1059 RTQQR 1063
Cdd:PRK04863 663 RLSQP 667
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
185-457 |
2.16e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 42.37 E-value: 2.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 185 QDKVLREAENKLEQSQKMvIEKEQSLQESKEECIKLKVDLLEQT-----KQGKRAERQRNEALY--NAEELSKAFQQYKk 257
Cdd:COG5022 808 SRKEYRSYLACIIKLQKT-IKREKKLRETEEVEFSLKAEVLIQKfgrslKAKKRFSLLKKETIYlqSAQRVELAERQLQ- 885
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 258 kvaeklEKVQAEEEILERNLTNCEKENKRLQERCGLYKS---ELEILKEKLRQLKEENNNG--KEKLRIMAVKTSEVmaq 332
Cdd:COG5022 886 ------ELKIDVKSISSLKLVNLELESEIIELKKSLSSDlieNLEFKTELIARLKKLLNNIdlEEGPSIEYVKLPEL--- 956
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 333 ltesrqsiLKLESELENKDEILRDKFSLMNENRELKVRVAAQNERLDLCQQEIESSRVELRSLEKIISQLPLKRELFGFK 412
Cdd:COG5022 957 --------NKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAEL 1028
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 2462508639 413 SYLSKYQMSSFSNKedrcigcceANKLVISDLRIKLAIKEAEIQK 457
Cdd:COG5022 1029 QSASKIISSESTEL---------SILKPLQKLKGLLLLENNQLQA 1064
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
232-380 |
2.21e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 42.00 E-value: 2.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 232 KRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQAEEEILERNltncekENKRLQERCGLYKSELEILKEKLRQLKEE 311
Cdd:PRK12705 33 KEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARRERE------ELQREEERLVQKEEQLDARAEKLDNLENQ 106
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462508639 312 NNNGKEKLRIMAVKTSEVMAQLTESRQSILKLESElENKDEILRDKFSLMNEnrELKVRVAAQNERLDL 380
Cdd:PRK12705 107 LEEREKALSARELELEELEKQLDNELYRVAGLTPE-QARKLLLKLLDAELEE--EKAQRVKKIEEEADL 172
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1019-1137 |
2.37e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.12 E-value: 2.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1019 NKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEAIDlgQELRLTREQ 1098
Cdd:PRK00409 519 NELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEAD--EIIKELRQL 596
|
90 100 110
....*....|....*....|....*....|....*....
gi 2462508639 1099 VQNSHTELAEarHQQVQAQREIERLSSELEDMKQLSKEK 1137
Cdd:PRK00409 597 QKGGYASVKA--HELIEARKRLNKANEKKEKKKKKQKEK 633
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
172-396 |
2.49e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.33 E-value: 2.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 172 EEQIINLEAEVSAQDKVLREAENKLEQSQKMVieKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNEALY-NAEELSK 250
Cdd:PRK02224 474 RERVEELEAELEDLEEEVEEVEERLERAEDLV--EAEDRIERLEERREDLEELIAERRETIEEKRERAEELReRAAELEA 551
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 251 AFQQYKKKVAEKLEKVQAEEEI---LERNLTNCEKENKRL------QERCGLYKSELEILKEKLRQLKEENNNGKEKLRI 321
Cdd:PRK02224 552 EAEEKREAAAEAEEEAEEAREEvaeLNSKLAELKERIESLerirtlLAAIADAEDEIERLREKREALAELNDERRERLAE 631
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 322 MAVKTSEVMAQLTESRQSILK-----LESELENKDEILRDkfsLMNENRELKVRVAAQNERLDlcqqEIESSRVELRSLE 396
Cdd:PRK02224 632 KRERKRELEAEFDEARIEEARedkerAEEYLEQVEEKLDE---LREERDDLQAEIGAVENELE----ELEELRERREALE 704
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
483-695 |
2.68e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 41.76 E-value: 2.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 483 LSSLETEPVKLGGHQVESVKDQNQHTMNKQYEKeRQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELlek 562
Cdd:pfam06160 253 LENLELDEAEEALEEIEERIDQLYDLLEKEVDA-KKYVEKNLPEIEDYLEHAEEQNKELKEELERVQQSYTLNENEL--- 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 563 aSNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMleaQLEKKDQQFKEQEKTmsmLQQDIICKQHHL 642
Cdd:pfam06160 329 -ERVRGLEKQLEELEKRYDEIVERLEEKEVAYSELQEELEEILEQLE---EIEEEQEEFKESLQS---LRKDELEAREKL 401
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462508639 643 ESLDRLLTESKGEMKKENM------------KKDEALKALQNQVSEETIKVRQLDSALEICKEEL 695
Cdd:pfam06160 402 DEFKLELREIKRLVEKSNLpglpesyldyffDVSDEIEDLADELNEVPLNMDEVNRLLDEAQDDV 466
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
913-1146 |
2.99e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.92 E-value: 2.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 913 LKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQ----ELLEMDQALKErnwELKQRAAQVTHLDM 988
Cdd:PHA02562 172 NKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQnkydELVEEAKTIKA---EIEELTDELLNLVM 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 989 TIR---EHRGEMEQKIIKLEGTLEKSELELK---------ECNKQIESLNDKLQNAKEQLREKEfimlqneQEISQLKKE 1056
Cdd:PHA02562 249 DIEdpsAALNKLNTAAAKIKSKIEQFQKVIKmyekggvcpTCTQQISEGPDRITKIKDKLKELQ-------HSLEKLDTA 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1057 IERTQQRMKEmesvmkeqeqyIATQYKEAIDLGQELRLTREQVQNShtelaeaRHQQVQAQREIERLSSEL----EDMKQ 1132
Cdd:PHA02562 322 IDELEEIMDE-----------FNEQSKKLLELKNKISTNKQSLITL-------VDKAKKVKAAIEELQAEFvdnaEELAK 383
|
250
....*....|....
gi 2462508639 1133 LSKEKDAHGNHLAE 1146
Cdd:PHA02562 384 LQDELDKIVKTKSE 397
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
161-355 |
3.21e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.05 E-value: 3.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 161 AQQQAASVPILEEQIINLEAEVSAQDKVLREAENKLEQSQKMVIEKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNE 240
Cdd:PTZ00121 1579 ALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEE 1658
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 241 ALYNAEELSKAFQQYKKKvAEKLEKVQAEEEILERNLTNCEKENKRLQErcgLYKSELEILK--EKLRQLKEENNNGKEK 318
Cdd:PTZ00121 1659 NKIKAAEEAKKAEEDKKK-AEEAKKAEEDEKKAAEALKKEAEEAKKAEE---LKKKEAEEKKkaEELKKAEEENKIKAEE 1734
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2462508639 319 LRIMA---VKTSEVMAQLTESRQSILKLESELENKDEILR 355
Cdd:PTZ00121 1735 AKKEAeedKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIR 1774
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
928-1099 |
3.28e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 3.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 928 QKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQraaqvthldmtIREHRGEMEQKIIKLEGT 1007
Cdd:COG1579 6 LRALLDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELED-----------LEKEIKRLELEIEEVEAR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1008 LEKSELELKEC--NKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYKEA 1085
Cdd:COG1579 75 IKKYEEQLGNVrnNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAEL 154
|
170
....*....|....
gi 2462508639 1086 IDLGQELRLTREQV 1099
Cdd:COG1579 155 EAELEELEAEREEL 168
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
943-1241 |
3.55e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 3.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 943 DLTAELRECKMEIEDKKQELLEMDQ---ALKERNWELKQRAAQvthldmtIREHRGEMeQKIIKLEGTLEKSELELKECN 1019
Cdd:PRK04863 290 ELRRELYTSRRQLAAEQYRLVEMARelaELNEAESDLEQDYQA-------ASDHLNLV-QTALRQQEKIERYQADLEELE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1020 KQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMkemesvmkEQEQYIATQYKEAIdlgQELRLTREQV 1099
Cdd:PRK04863 362 ERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQAL--------DVQQTRAIQYQQAV---QALERAKQLC 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1100 QNSHTELAEARHQQVQAQREIERLSSELEDMKQ-LSKEKDAHGNH-----LAEELGASKVR-EAHLEA----RMQAEIKK 1168
Cdd:PRK04863 431 GLPDLTADNAEDWLEEFQAKEQEATEELLSLEQkLSVAQAAHSQFeqayqLVRKIAGEVSRsEAWDVArellRRLREQRH 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1169 LSAEVESLKEAYH-MEMISHQENHAKWKISADSQKSSVQ------------QLNEQLEKAKLELEEAQDTVSNLHQQVQD 1235
Cdd:PRK04863 511 LAEQLQQLRMRLSeLEQRLRQQQRAERLLAEFCKRLGKNlddedeleqlqeELEARLESLSESVSEARERRMALRQQLEQ 590
|
....*.
gi 2462508639 1236 RNEVIE 1241
Cdd:PRK04863 591 LQARIQ 596
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
822-972 |
3.76e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.61 E-value: 3.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 822 ARqVKIEMDQYKEELSKMEKEIMHLKRDgenkamhlsQLDMILDQTKTELEKKTNAVKELEKLQHSTEtELTEALQKREV 901
Cdd:COG0542 400 AR-VRMEIDSKPEELDELERRLEQLEIE---------KEALKKEQDEASFERLAELRDELAELEEELE-ALKARWEAEKE 468
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 902 LETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIK-DLTAElreckmEI----------------EDKKQELLE 964
Cdd:COG0542 469 LIEEIQELKEELEQRYGKIPELEKELAELEEELAELAPLLReEVTEE------DIaevvsrwtgipvgkllEGEREKLLN 542
|
....*...
gi 2462508639 965 MDQALKER 972
Cdd:COG0542 543 LEEELHER 550
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
764-1036 |
3.86e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 3.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 764 ELEDTQTK---LEKQVSKLEQELQKQREssaeKLRKMEEKC---------------ESAAHEADLKRQKVIEltgtARQV 825
Cdd:PRK04863 838 ELRQLNRRrveLERALADHESQEQQQRS----QLEQAKEGLsalnrllprlnlladETLADRVEEIREQLDE----AEEA 909
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 826 KIEMDQYKEELSKMEKEIMHLKRDGENKAmHLSQLDMILDQTKTELEKKTNAVKELEKLQH-----------STETELTE 894
Cdd:PRK04863 910 KRFVQQHGNALAQLEPIVSVLQSDPEQFE-QLKQDYQQAQQTQRDAKQQAFALTEVVQRRAhfsyedaaemlAKNSDLNE 988
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 895 ALQKR-EVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDkkqellEMDQALKERN 973
Cdd:PRK04863 989 KLRQRlEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADS------GAEERARARR 1062
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462508639 974 WELKQRaaqvthldmtIREHRGEMEQkiikLEGTLEKSELELKECNKQIESLNDKLQNAKEQL 1036
Cdd:PRK04863 1063 DELHAR----------LSANRSRRNQ----LEKQLTFCEAEMDNLTKKLRKLERDYHEMREQV 1111
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
518-1001 |
3.87e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.54 E-value: 3.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 518 QRLVTGIEELRTKLIQIEAENSDLKVNMA---HRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAY 594
Cdd:TIGR04523 162 NDLKKQKEELENELNLLEKEKLNIQKNIDkikNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEI 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 595 SSIAAKNAELEQELM--------LEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTES-KGEMKKENMKKDE 665
Cdd:TIGR04523 242 NEKTTEISNTQTQLNqlkdeqnkIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDwNKELKSELKNQEK 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 666 ALKALQNQVSEETIKVRQLDSALEICKEELvlhlNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQ 745
Cdd:TIGR04523 322 KLEEIQNQISQNNKIISQLNEQISQLKKEL----TNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLE 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 746 HTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRE---SSAEKLRKMEEKCESAAHEADLKRQKVIELTGTA 822
Cdd:TIGR04523 398 SKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSeikDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSI 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 823 RQVKIEMDQYKEELSKMEKEIMHL---KRDGENKAMHL----SQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEA 895
Cdd:TIGR04523 478 NKIKQNLEQKQKELKSKEKELKKLneeKKELEEKVKDLtkkiSSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKE 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 896 LQKREVLE-----TELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALK 970
Cdd:TIGR04523 558 NLEKEIDEknkeiEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIK 637
|
490 500 510
....*....|....*....|....*....|.
gi 2462508639 971 ERNWELKQRAAQVTHLDMTIREHRGEMEQKI 1001
Cdd:TIGR04523 638 SKKNKLKQEVKQIKETIKEIRNKWPEIIKKI 668
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
787-1141 |
4.31e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.48 E-value: 4.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 787 RESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQ-------VKIEMDQyKEELSKMEKEIMHLKRdgenkamHLSQ 859
Cdd:PRK04863 784 REKRIEQLRAEREELAERYATLSFDVQKLQRLHQAFSRfigshlaVAFEADP-EAELRQLNRRRVELER-------ALAD 855
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 860 LDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKRevletelqnahgelkstLRQLQELRDVLQKAQLSLEE--- 936
Cdd:PRK04863 856 HESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADETLADR-----------------VEEIREQLDEAEEAKRFVQQhgn 918
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 937 KYTTIKDLTAELRECKMEIEDKKQELLEMDQALKErnweLKQRAAQVTHLdMTIREHRG-EMEQKIikLEGTLEKSELeL 1015
Cdd:PRK04863 919 ALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRD----AKQQAFALTEV-VQRRAHFSyEDAAEM--LAKNSDLNEK-L 990
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1016 KECNKQIESLNDKlqnAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEqeqyIATQYKEaiDLGQELRLT 1095
Cdd:PRK04863 991 RQRLEQAEQERTR---AREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQD----LGVPADS--GAEERARAR 1061
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 2462508639 1096 REQVqnsHTELAEARHQQVQAQREIERLSSELEDM-KQLSK-EKDAHG 1141
Cdd:PRK04863 1062 RDEL---HARLSANRSRRNQLEKQLTFCEAEMDNLtKKLRKlERDYHE 1106
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
784-1155 |
5.02e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.48 E-value: 5.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 784 QKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRdgenKAMHLSQLDMI 863
Cdd:PRK04863 347 QEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQT----RAIQYQQAVQA 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 864 LDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAhgelKSTLRQLQELRDVLQKA--QLSLEEKYTTI 941
Cdd:PRK04863 423 LERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVA----QAAHSQFEQAYQLVRKIagEVSRSEAWDVA 498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 942 KDLTAELRECKMEIEDKKQelLEMDQALKERNWELKQRAAQVthldmtirehRGEMEQKIIKLEGTLEKSELELKECNKQ 1021
Cdd:PRK04863 499 RELLRRLREQRHLAEQLQQ--LRMRLSELEQRLRQQQRAERL----------LAEFCKRLGKNLDDEDELEQLQEELEAR 566
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1022 IESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKeieRTQQRMKEMESVMKEQEQYIATQyKEAIDLGQELRLTREQVQN 1101
Cdd:PRK04863 567 LESLSESVSEARERRMALRQQLEQLQARIQRLAA---RAPAWLAAQDALARLREQSGEEF-EDSQDVTEYMQQLLERERE 642
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 2462508639 1102 SHTELAEARHQQVQAQREIERLSseledmkQLSKEKDAHGNHLAEELGASKVRE 1155
Cdd:PRK04863 643 LTVERDELAARKQALDEEIERLS-------QPGGSEDPRLNALAERFGGVLLSE 689
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
723-937 |
5.47e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 5.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 723 LQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCE 802
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLR 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 803 SAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENkamhlsqldmiLDQTKTELEKKTNAVKELE 882
Cdd:COG4942 112 ALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAE-----------LAALRAELEAERAELEALL 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2462508639 883 KLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEK 937
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1056-1247 |
5.53e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 5.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1056 EIERTQQRMKEMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSK 1135
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1136 EKDAHGNHLAEELGASKVREA--------HLEARMQAEIKKLSAEVESLKEAyhmemishqenhakwKISADSQKSSVQQ 1207
Cdd:COG3883 97 RSGGSVSYLDVLLGSESFSDFldrlsalsKIADADADLLEELKADKAELEAK---------------KAELEAKLAELEA 161
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2462508639 1208 LNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEAL 1247
Cdd:COG3883 162 LKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAEL 201
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
761-971 |
6.18e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.77 E-value: 6.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 761 RNGELEDTQTKLEKQVSKLEQELQkQRESSAEKLRKmEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKME 840
Cdd:COG3206 169 RREEARKALEFLEEQLPELRKELE-EAEAALEEFRQ-KNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALR 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 841 KEImhlkRDGENKAMHLSQlDMILDQTKTELEKKTNAVKELEKL---QHSTETELTEALQK-REVLETELQNAHGELKST 916
Cdd:COG3206 247 AQL----GSGPDALPELLQ-SPVIQQLRAQLAELEAELAELSARytpNHPDVIALRAQIAAlRAQLQQEAQRILASLEAE 321
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2462508639 917 LRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKE 971
Cdd:COG3206 322 LEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEE 376
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
952-1253 |
7.39e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 40.83 E-value: 7.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 952 KMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQK---IIKLEGTLEK----SELELKECNKQIES 1024
Cdd:COG5022 767 ALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYlacIIKLQKTIKRekklRETEEVEFSLKAEV 846
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1025 LNDKLQNAKEqlREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQY---KEAIDLGQEL--------- 1092
Cdd:COG5022 847 LIQKFGRSLK--AKKRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLeleSEIIELKKSLssdlienle 924
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1093 ----RLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAEELGASKVREAHLEARMQA---- 1164
Cdd:COG5022 925 fkteLIARLKKLLNNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKElael 1004
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 1165 --EIKKLSAEVESLKEAYHmeMISHQENHAKWKISADSQKSSVQQLNEQleKAKLELEEAQDTVSNLHQQVQDRNEVIEA 1242
Cdd:COG5022 1005 skQYGALQESTKQLKELPV--EVAELQSASKIISSESTELSILKPLQKL--KGLLLLENNQLQARYKALKLRRENSLLDD 1080
|
330
....*....|.
gi 2462508639 1243 ANEALLTKGEN 1253
Cdd:COG5022 1081 KQLYQLESTEN 1091
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
293-905 |
9.44e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 40.48 E-value: 9.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 293 LYKSELEILKEKLR---QLKEENNNGKEKLRIMAVKTSEVMAQLTESRQSILKLESELENKDEILRDKFSLMNENRELKV 369
Cdd:pfam05483 83 LYKEAEKIKKWKVSieaELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLLKE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 370 RVAAQNERLDLCQQEIESSRVELRSLEKIISQLPLKRELFGFKSYLSKYQMSsFSNKEDRcigcceanklvisdlrIKLA 449
Cdd:pfam05483 163 TCARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMH-FKLKEDH----------------EKIQ 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 450 IKEAEIQKlHANLTANQLSQSLITCNDSQESSKLSSLETEPVKLGGHQVESvKDQNQHTMNKQYEKERQRLVTGIEELRT 529
Cdd:pfam05483 226 HLEEEYKK-EINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEE-KTKLQDENLKELIEKKDHLTKELEDIKM 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 530 KLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAEleQELM 609
Cdd:pfam05483 304 SLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNED--QLKI 381
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 610 LEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKG-EMKKENMKKDEALKALQNQVSEEtiKVRQLDSAL 688
Cdd:pfam05483 382 ITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQfEKIAEELKGKEQELIFLLQAREK--EIHDLEIQL 459
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 689 EICKEELVLHLNQLEGNKEKFEKQlKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRN----GE 764
Cdd:pfam05483 460 TAIKTSEEHYLKEVEDLKTELEKE-KLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMlkqiEN 538
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462508639 765 LEDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIM 844
Cdd:pfam05483 539 LEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENK 618
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462508639 845 HLKRDG--ENKAMH-----LSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETE 905
Cdd:pfam05483 619 ALKKKGsaENKQLNayeikVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADE 686
|
|
| |
