NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2462586144|ref|XP_054182215|]
View 

serine/threonine-protein phosphatase 6 regulatory subunit 2 isoform X17 [Homo sapiens]

Protein Classification

SAPS family protein( domain architecture ID 10517350)

SAPS (SIT4-associating proteins) family protein

Gene Ontology:  GO:0019888|GO:0043666
PubMed:  8649382

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
SAPS pfam04499
SIT4 phosphatase-associated protein; This family includes a conserved region from a group of ...
 150-554 2.98e-160

SIT4 phosphatase-associated protein; This family includes a conserved region from a group of yeast proteins that associate with the SIT4 phosphatase. This association is required for SIT4's role in G1 cyclin transcription and for bud formation. This family also includes homologous regions from other eukaryotes.


:

Pssm-ID: 398279  Cd Length: 383  Bit Score: 475.19  E-value: 2.98e-160
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586144 150 IGNLIARKTEQVITFLKKKDKFISLVLKHIGTSALMDLLLRLVSCVEPaGLRQDVLHWLNEEKVIQRLVELIHPSQDEDR 229
Cdd:pfam04499   1 NENLLDRKTDQMIEFIRKQENFVDKFLKHIDTPAIMDLLLKLISTDKP-ELPTGVIEWLNEQNLIPKLLDLLSPSYDEDI 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586144 230 QSNASQTLCDIVRLGRDQGSQLQEALEPDPLLTALESQDCVEQLLKNMFDGdRTESCLVSGTQVLLTLLETRRVGTEGLV 309
Cdd:pfam04499  80 QSNASDFLKAIITISRNAPLQLQSSIGPNELTRELVSEESVEKLLDNMLKG-KSGSALVNGVGIIIELIRKNNSDYDPVQ 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586144 310 DSFSQGLERSYAVSSSV-----LHGIEPRLKDFHQLLLNPPKKKAILTTIGVLEEPLGNARLHGARLMAALLHTNTPSIN 384
Cdd:pfam04499 159 LLYTTLEEHPPSDRDPIylghlLRAFSPHLPDFHQLLLDPPKDSPLQTTLGVLIEPLGFERFKIVELIAELLHCSNMSLL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586144 385 QE---------LCRLNTMDLLLDLFFKYTWNNFLHFQVELCIAAILshaareerteasgsesrvepphengNRSLETPQp 455
Cdd:pfam04499 239 NEkkgeklkikLVDLGIIPTILDLFFKYPWNNFLHNVVEDIIQQIL-------------------------NGPMDFSY- 292

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586144 456 aaslpDNTMVTHLFQKCCLVQRILEAWEANDHTQAAGGMRRGNMGHLTRIANAVVQNLERGPVQTHISEVIRGLpadCRG 535
Cdd:pfam04499 293 -----NSFLVVDLFTDCNLTQRILEGQKESDRFQAEKGPRLGYMGHLTLIAEEVVKFSEKYPPELISPDILEIL---ENE 364

                         410
                  ....*....|....*....
gi 2462586144 536 RWESFVEETLTETNRRNTV 554
Cdd:pfam04499 365 EWEEYVEETLEETRERYNV 383
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 759-945 3.04e-06

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.48  E-value: 3.04e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586144  759 ESGPRCSSPVDTECSHAEGSRSQGPEKAFSPASPCAWNVCVTRKAPllasdssssggshsedgdqkAASAMDAVSRGPGR 838
Cdd:PHA03247  2709 EPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGP--------------------ARPARPPTTAGPPA 2768

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586144  839 EAPPLPTVARTEEAVGRVGCADSRLLSPACPAPKEVTAAPAVAVPPEAtvAITTALSKAGPaIPTPAVSSALAVAVPLGP 918
Cdd:PHA03247  2769 PAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAA--ALPPAASPAGP-LPPPTSAQPTAPPPPPGP 2845

                          170       180
                   ....*....|....*....|....*..
gi 2462586144  919 IMAVTAAPAMVATLGTVTKDGKTDAPP 945
Cdd:PHA03247  2846 PPPSLPLGGSVAPGGDVRRRPPSRSPA 2872
 
Name Accession Description Interval E-value
SAPS pfam04499
SIT4 phosphatase-associated protein; This family includes a conserved region from a group of ...
 150-554 2.98e-160

SIT4 phosphatase-associated protein; This family includes a conserved region from a group of yeast proteins that associate with the SIT4 phosphatase. This association is required for SIT4's role in G1 cyclin transcription and for bud formation. This family also includes homologous regions from other eukaryotes.


Pssm-ID: 398279  Cd Length: 383  Bit Score: 475.19  E-value: 2.98e-160
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586144 150 IGNLIARKTEQVITFLKKKDKFISLVLKHIGTSALMDLLLRLVSCVEPaGLRQDVLHWLNEEKVIQRLVELIHPSQDEDR 229
Cdd:pfam04499   1 NENLLDRKTDQMIEFIRKQENFVDKFLKHIDTPAIMDLLLKLISTDKP-ELPTGVIEWLNEQNLIPKLLDLLSPSYDEDI 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586144 230 QSNASQTLCDIVRLGRDQGSQLQEALEPDPLLTALESQDCVEQLLKNMFDGdRTESCLVSGTQVLLTLLETRRVGTEGLV 309
Cdd:pfam04499  80 QSNASDFLKAIITISRNAPLQLQSSIGPNELTRELVSEESVEKLLDNMLKG-KSGSALVNGVGIIIELIRKNNSDYDPVQ 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586144 310 DSFSQGLERSYAVSSSV-----LHGIEPRLKDFHQLLLNPPKKKAILTTIGVLEEPLGNARLHGARLMAALLHTNTPSIN 384
Cdd:pfam04499 159 LLYTTLEEHPPSDRDPIylghlLRAFSPHLPDFHQLLLDPPKDSPLQTTLGVLIEPLGFERFKIVELIAELLHCSNMSLL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586144 385 QE---------LCRLNTMDLLLDLFFKYTWNNFLHFQVELCIAAILshaareerteasgsesrvepphengNRSLETPQp 455
Cdd:pfam04499 239 NEkkgeklkikLVDLGIIPTILDLFFKYPWNNFLHNVVEDIIQQIL-------------------------NGPMDFSY- 292

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586144 456 aaslpDNTMVTHLFQKCCLVQRILEAWEANDHTQAAGGMRRGNMGHLTRIANAVVQNLERGPVQTHISEVIRGLpadCRG 535
Cdd:pfam04499 293 -----NSFLVVDLFTDCNLTQRILEGQKESDRFQAEKGPRLGYMGHLTLIAEEVVKFSEKYPPELISPDILEIL---ENE 364

                         410
                  ....*....|....*....
gi 2462586144 536 RWESFVEETLTETNRRNTV 554
Cdd:pfam04499 365 EWEEYVEETLEETRERYNV 383
PHA03247 PHA03247
large tegument protein UL36; Provisional
 759-945 3.04e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.48  E-value: 3.04e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586144  759 ESGPRCSSPVDTECSHAEGSRSQGPEKAFSPASPCAWNVCVTRKAPllasdssssggshsedgdqkAASAMDAVSRGPGR 838
Cdd:PHA03247  2709 EPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGP--------------------ARPARPPTTAGPPA 2768

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586144  839 EAPPLPTVARTEEAVGRVGCADSRLLSPACPAPKEVTAAPAVAVPPEAtvAITTALSKAGPaIPTPAVSSALAVAVPLGP 918
Cdd:PHA03247  2769 PAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAA--ALPPAASPAGP-LPPPTSAQPTAPPPPPGP 2845

                          170       180
                   ....*....|....*....|....*..
gi 2462586144  919 IMAVTAAPAMVATLGTVTKDGKTDAPP 945
Cdd:PHA03247  2846 PPPSLPLGGSVAPGGDVRRRPPSRSPA 2872
 
Name Accession Description Interval E-value
SAPS pfam04499
SIT4 phosphatase-associated protein; This family includes a conserved region from a group of ...
 150-554 2.98e-160

SIT4 phosphatase-associated protein; This family includes a conserved region from a group of yeast proteins that associate with the SIT4 phosphatase. This association is required for SIT4's role in G1 cyclin transcription and for bud formation. This family also includes homologous regions from other eukaryotes.


Pssm-ID: 398279  Cd Length: 383  Bit Score: 475.19  E-value: 2.98e-160
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586144 150 IGNLIARKTEQVITFLKKKDKFISLVLKHIGTSALMDLLLRLVSCVEPaGLRQDVLHWLNEEKVIQRLVELIHPSQDEDR 229
Cdd:pfam04499   1 NENLLDRKTDQMIEFIRKQENFVDKFLKHIDTPAIMDLLLKLISTDKP-ELPTGVIEWLNEQNLIPKLLDLLSPSYDEDI 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586144 230 QSNASQTLCDIVRLGRDQGSQLQEALEPDPLLTALESQDCVEQLLKNMFDGdRTESCLVSGTQVLLTLLETRRVGTEGLV 309
Cdd:pfam04499  80 QSNASDFLKAIITISRNAPLQLQSSIGPNELTRELVSEESVEKLLDNMLKG-KSGSALVNGVGIIIELIRKNNSDYDPVQ 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586144 310 DSFSQGLERSYAVSSSV-----LHGIEPRLKDFHQLLLNPPKKKAILTTIGVLEEPLGNARLHGARLMAALLHTNTPSIN 384
Cdd:pfam04499 159 LLYTTLEEHPPSDRDPIylghlLRAFSPHLPDFHQLLLDPPKDSPLQTTLGVLIEPLGFERFKIVELIAELLHCSNMSLL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586144 385 QE---------LCRLNTMDLLLDLFFKYTWNNFLHFQVELCIAAILshaareerteasgsesrvepphengNRSLETPQp 455
Cdd:pfam04499 239 NEkkgeklkikLVDLGIIPTILDLFFKYPWNNFLHNVVEDIIQQIL-------------------------NGPMDFSY- 292

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586144 456 aaslpDNTMVTHLFQKCCLVQRILEAWEANDHTQAAGGMRRGNMGHLTRIANAVVQNLERGPVQTHISEVIRGLpadCRG 535
Cdd:pfam04499 293 -----NSFLVVDLFTDCNLTQRILEGQKESDRFQAEKGPRLGYMGHLTLIAEEVVKFSEKYPPELISPDILEIL---ENE 364

                         410
                  ....*....|....*....
gi 2462586144 536 RWESFVEETLTETNRRNTV 554
Cdd:pfam04499 365 EWEEYVEETLEETRERYNV 383
PHA03247 PHA03247
large tegument protein UL36; Provisional
 759-945 3.04e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.48  E-value: 3.04e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586144  759 ESGPRCSSPVDTECSHAEGSRSQGPEKAFSPASPCAWNVCVTRKAPllasdssssggshsedgdqkAASAMDAVSRGPGR 838
Cdd:PHA03247  2709 EPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGP--------------------ARPARPPTTAGPPA 2768

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586144  839 EAPPLPTVARTEEAVGRVGCADSRLLSPACPAPKEVTAAPAVAVPPEAtvAITTALSKAGPaIPTPAVSSALAVAVPLGP 918
Cdd:PHA03247  2769 PAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAA--ALPPAASPAGP-LPPPTSAQPTAPPPPPGP 2845

                          170       180
                   ....*....|....*....|....*..
gi 2462586144  919 IMAVTAAPAMVATLGTVTKDGKTDAPP 945
Cdd:PHA03247  2846 PPPSLPLGGSVAPGGDVRRRPPSRSPA 2872
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
788-950 1.58e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 48.72  E-value: 1.58e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586144 788 SPASPCAWNVCVTRKA--PLLASDSSSSGGSHSEDGDQKAASAMDAVSRGPGREAPPLPTVARTEEAVGRVGCADSRLLS 865
Cdd:PRK12323  373 GPATAAAAPVAQPAPAaaAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAP 452

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586144 866 PACPAPKEVTAAPAVAVPPEATVAITTALSKAGPAIPTPAVSSA-----LAVAVPLGPIMAVTAAPAMVATLGTvTKDGK 940
Cdd:PRK12323  453 APAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPppweeLPPEFASPAPAQPDAAPAGWVAESI-PDPAT 531

                         170
                  ....*....|
gi 2462586144 941 TDAPPEGAAL 950
Cdd:PRK12323  532 ADPDDAFETL 541
PHA02682 PHA02682
ORF080 virion core protein; Provisional
 823-927 9.25e-05

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 45.24  E-value: 9.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586144 823 QKAASAMDAVSRGPGREAPPLPTVARTEEAVGRVGCAdsrllsPACPAPKEVTAAPAVAVPPEATVAITTALSKAGPAIP 902
Cdd:PHA02682   63 QSRLKANSACMQRPSGQSPLAPSPACAAPAPACPACA------PAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPARP 136

                          90       100
                  ....*....|....*....|....*
gi 2462586144 903 TPAVSSALAVAVPLGPIMAVTAAPA 927
Cdd:PHA02682  137 APACPPSTRQCPPAPPLPTPKPAPA 161
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
831-931 9.05e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 43.30  E-value: 9.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586144 831 AVSRGPGREAPPLPTVARTEEAVGRVgcADSRLLSPACPAPKEVTAAPAVAVPPEATVAITTALSKAGPAIPTPAVSSAL 910
Cdd:PRK07003  361 AVTGGGAPGGGVPARVAGAVPAPGAR--AAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADR 438

                          90       100
                  ....*....|....*....|.
gi 2462586144 911 AVAVPLGPIMAVTAAPAMVAT 931
Cdd:PRK07003  439 GDDAADGDAPVPAKANARASA 459
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
825-949 1.63e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 42.53  E-value: 1.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586144 825 AASAMDAVSRGPGREAPPlptVARTEEAVGRVGCADSRLLSPACPAPKEVTAAPAVAVPPEATVAITTALSKAGPAIPTP 904
Cdd:PRK07003  409 ALAPKAAAAAAATRAEAP---PAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAP 485

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 2462586144 905 AvSSALAVAVPLGPIMAVTAAPAMVATLGTVTKDGKTDAPPEGAA 949
Cdd:PRK07003  486 P-DAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPA 529
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 865-954 1.90e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 42.10  E-value: 1.90e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586144 865 SPACPAPKEVTAAPAVAVPPEATVAITTALSKAGPAIPTPAVSSALAVAVPLGPIMAVTAAPAMVATLGTVTKDGKTDAP 944
Cdd:PRK14950  370 KPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAP 449

                          90
                  ....*....|..
gi 2462586144 945 P--EGAALNGPV 954
Cdd:PRK14950  450 PkeEEKALIADG 461
PHA03247 PHA03247
large tegument protein UL36; Provisional
 826-953 2.16e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.23  E-value: 2.16e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586144  826 ASAMDAVSRGPGREAPPLPTVARTEEAVGRvgcADSRLLSPACPApkevtaAPAVAVPPEATVAITTALSKAGPAIPTPA 905
Cdd:PHA03247  2696 TSLADPPPPPPTPEPAPHALVSATPLPPGP---AAARQASPALPA------APAPPAVPAGPATPGGPARPARPPTTAGP 2766

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 2462586144  906 VSSALAVAVPLGPIMAVTAAPAMVATLGTVTKDGKTDAPPEGAALNGP 953
Cdd:PHA03247  2767 PAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAP 2814
PHA03247 PHA03247
large tegument protein UL36; Provisional
 715-945 7.79e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.31  E-value: 7.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586144  715 PANSTPTAPGVVKDVGSSVWAAGTSAPEEKGWAKFTDFQPFCCSeSGPRCSSPVDTECSHAEGSRSQGPEKAFSPASPCA 794
Cdd:PHA03247  2613 PPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDP-APGRVSRPRRARRLGRAAQASSPPQRPRRRAARPT 2691

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586144  795 wnvcvtrKAPLLASDSSSSGGSHSEDGDQKAASAMD----AVSRGPGREAPPLPTVARTEEAVGRVGCADSRLLSPACPA 870
Cdd:PHA03247  2692 -------VGSLTSLADPPPPPPTPEPAPHALVSATPlppgPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTA 2764

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586144  871 PKEVTAAPAvaVP-----PEATVAITTALSKAGPAIPTPAVSSALAVAVPlGPIMAVTAAPAMVATLGTVTKDGKTDAPP 945
Cdd:PHA03247  2765 GPPAPAPPA--APaagppRRLTRPAVASLSESRESLPSPWDPADPPAAVL-APAAALPPAASPAGPLPPPTSAQPTAPPP 2841
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
835-954 9.30e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 39.86  E-value: 9.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462586144 835 GPGREAPPLPTVARTEEAVGRVGCADSRLLSPACPAPKEVTAAPAVAVPPEATVAITTALSKAGPAIPTPAVSSALAVAV 914
Cdd:PRK12323  367 QSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGG 446

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 2462586144 915 PLGPIMAVTAAPAMVATLGTVTKDGKTDAPPEGAALNGPV 954
Cdd:PRK12323  447 APAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPA 486
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH