|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
621-932 |
1.26e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 75.36 E-value: 1.26e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 621 EREKDDMETKLLHLEDVVRALEKHVDLRENDR---LEFHRLSEE-----NTLLKNDLGRVRQELEAAESTHDAQRKEIEV 692
Cdd:COG1196 178 ERKLEATEENLERLEDILGELERQLEPLERQAekaERYRELKEElkeleAELLLLKLRELEAELEELEAELEELEAELEE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 693 LKKDKEKACSEMEVLNRQNQNYKDQLSQLNVRVLQLGQEASTHQAQNEEHRVTIQMLTQSLEEVVRSGQQQSDQIQKLRV 772
Cdd:COG1196 258 LEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 773 ELECLNQEHQSLQLPWSELTQTLEESQDQVQGAHLRLRQAQAQHLQEVR--LVPQDRVAELHRLLsLQGEQARRRLDAQR 850
Cdd:COG1196 338 ELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEelLEALRAAAELAAQL-EELEEAEEALLERL 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 851 EEHEKQLKATEERVEEAEMILKNMEMLLQEKVDKLKEQFEKNTKSDLLLKELYVENAHLVRALQATEEKQRGAEKQSRLL 930
Cdd:COG1196 417 ERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLL 496
|
..
gi 2462579920 931 EE 932
Cdd:COG1196 497 LE 498
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
621-938 |
1.35e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.93 E-value: 1.35e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 621 EREKDDMETKLLHLEDVVRALEKHVDLRENDR---LEFHRLSEE-----NTLLKNDLGRVRQELEAAESTHDAQRKEIEV 692
Cdd:TIGR02168 178 ERKLERTRENLDRLEDILNELERQLKSLERQAekaERYKELKAElreleLALLVLRLEELREELEELQEELKEAEEELEE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 693 LKKDKEKACSEMEVLNRQNQNYKDQLSQLNVRVLQLGQEASTHQAQNEEHRVTIQMLTQSLEEVVRSGQQQSDQIQKLRV 772
Cdd:TIGR02168 258 LTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 773 ELECLNQEHQSLQLPWSELTQTLEESQDQVQGAHLRLRQAQAQHLQEVRlvpqdRVAELhrllslqgEQARRRLDAQREE 852
Cdd:TIGR02168 338 ELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS-----KVAQL--------ELQIASLNNEIER 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 853 HEKQLKATEERVEEAEMILKNMEMLLQEKvdKLKEQFEKNTKSDLLLKELYVENAHLVRALQATEEKQRGAEKQSRLLEE 932
Cdd:TIGR02168 405 LEARLERLEDRRERLQQEIEELLKKLEEA--ELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAER 482
|
....*.
gi 2462579920 933 KVHALN 938
Cdd:TIGR02168 483 ELAQLQ 488
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
620-946 |
6.12e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.62 E-value: 6.12e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 620 LEREKDDMETKLLHLEDVVRALEKHVdlrENDRLEFHRLSEENTLLKNDLGRVRQELEAAESTHDAQRKEIEVLKKDKEK 699
Cdd:TIGR02168 717 LRKELEELSRQISALRKDLARLEAEV---EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQ 793
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 700 ACSEMEVLNRQNQNYKDQLSQLNVRVLQLGQEASTHQAQNEEHRVTIQMLTQSLEevvrsgqQQSDQIQKLRVELEclnq 779
Cdd:TIGR02168 794 LKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE-------ELSEDIESLAAEIE---- 862
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 780 ehqslqlpwsELTQTLEESQDQVQgAHLRLRQAQAQHLQEVRLVPQDRVAELHRLlslqgEQARRRLDAQREEHEKQLKA 859
Cdd:TIGR02168 863 ----------ELEELIEELESELE-ALLNERASLEEALALLRSELEELSEELREL-----ESKRSELRRELEELREKLAQ 926
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 860 TEERVEEAEMilknmemllqeKVDKLKEQFekntksdlllkelyveNAHLVRALQATEEKQRGAEKQSRLLEEKVHALNK 939
Cdd:TIGR02168 927 LELRLEGLEV-----------RIDNLQERL----------------SEEYSLTLEEAEALENKIEDDEEEARRRLKRLEN 979
|
....*..
gi 2462579920 940 LVSRIAP 946
Cdd:TIGR02168 980 KIKELGP 986
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
654-929 |
1.47e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 1.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 654 EFHRLSEENTLLKNDLGRVRQELEAAESTHDAQRKEIEVLKKDKEKACSEMEVLNRQNQ-------NYKDQLSQLNVRVL 726
Cdd:TIGR02169 689 ELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSsleqeieNVKSELKELEARIE 768
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 727 QLgqEASTHQAQNEEHRVTIQMLTQSLEEVVRSGQQQSDQIQKLRVELECLNQEHQSLQLPWSELTQTLEESQDQVQGAH 806
Cdd:TIGR02169 769 EL--EEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLK 846
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 807 LRLRQ-AQAQHLQEVRLVPQDRVAELHRLLSLQGEQARRRLDAQREEHEKQLKATEERVEEAEMILKNMEMLLQEKVDKL 885
Cdd:TIGR02169 847 EQIKSiEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKL 926
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 2462579920 886 KEQFEKNTKSDLLLKELYVENAHLVRALQATEEKQRGAEKQSRL 929
Cdd:TIGR02169 927 EALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRAL 970
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
553-932 |
4.71e-08 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 57.27 E-value: 4.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 553 RSWSRGTQEQASEQQARAEGALEPGCHkhsveVARRGSLPSHLQLADP-QGSWQEQLAAPEegetkiALEREKDDMETKL 631
Cdd:PRK04863 293 RELYTSRRQLAAEQYRLVEMARELAEL-----NEAESDLEQDYQAASDhLNLVQTALRQQE------KIERYQADLEELE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 632 LHLEDVVRALEKHVDLRENDRLEFHRLSEENTLLKNDLGRVRQELEAAESTHDAQRKEIEVLkkDKEKACSEMEVLNRQN 711
Cdd:PRK04863 362 ERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQAL--ERAKQLCGLPDLTADN 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 712 -----QNYKDQLSQLNVRVLQLGQEASTHQAQNEEHRVTIQMLTQSLEEVVRSGQQQSdQIQKLR--VELECLNQEHQSL 784
Cdd:PRK04863 440 aedwlEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDV-ARELLRrlREQRHLAEQLQQL 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 785 QLPWSELTQTLEESQDQVQgahlRLRQAQAQHLQEVrlvpqDRVAELHRLLSLQGEQ------ARRRLDAQREEHEKQLK 858
Cdd:PRK04863 519 RMRLSELEQRLRQQQRAER----LLAEFCKRLGKNL-----DDEDELEQLQEELEARleslseSVSEARERRMALRQQLE 589
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462579920 859 ATEERVEEAEmILKNMEMLLQEKVDKLKEQFEKNTKSDLLLKELYveNAHLVRALQATEEKQRGAEKQSRLLEE 932
Cdd:PRK04863 590 QLQARIQRLA-ARAPAWLAAQDALARLREQSGEEFEDSQDVTEYM--QQLLERERELTVERDELAARKQALDEE 660
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
602-888 |
1.05e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.23 E-value: 1.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 602 GSWQEQLAAPEEGETKIA-LEREKDDMETKLLHLEDVVRALEKhvdLRENDRLEFHRLSEENTL-LKNDLGRVRQELEAA 679
Cdd:TIGR02169 230 KEKEALERQKEAIERQLAsLEEELEKLTEEISELEKRLEEIEQ---LLEELNKKIKDLGEEEQLrVKEKIGELEAEIASL 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 680 ESTHDAQRKEIEVLKKDKEKACSEMEVLNRQNQNYKDQLSQLNVRVLQLGQEASTHQAQNEEhrvtiqmLTQSLEEVVRS 759
Cdd:TIGR02169 307 ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELED-------LRAELEEVDKE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 760 GQQQSDQIQKLRVELECLNQEHQSLQLPWSELTQTLEESQDQVQGAHLRLRQAQAQH--LQEVRLVPQDRVAELhrllsl 837
Cdd:TIGR02169 380 FAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKIneLEEEKEDKALEIKKQ------ 453
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 2462579920 838 qgEQARRRLDAQREEHEKQLKATEERVEEAEMILKNmemlLQEKVDKLKEQ 888
Cdd:TIGR02169 454 --EWKLEQLAADLSKYEQELYDLKEEYDRVEKELSK----LQRELAEAEAQ 498
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
625-886 |
2.66e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.68 E-value: 2.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 625 DDMETKLLHLEDVVRALEKHVDLRENDRLEFHRLSEENTLLKNDLGRVRQELEAAESTHDAQRKEIEVLKKDKEKACSEM 704
Cdd:TIGR02168 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 705 EVLNRQNQNYKDQLSQLNVRVLQLGQEASTHQAQNEEHRVTIQMLTQSLEEVVRSGQQQSDQIQKLRVELECLNQEHQSL 784
Cdd:TIGR02168 312 ANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQL 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 785 QLPWSELTQTLEESQDQVQGAHLRLRQAQAQHLQEVRLVPQDRVAELHRLLSlQGEQARRRLDAQREEHEKQLKATEERV 864
Cdd:TIGR02168 392 ELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELE-ELEEELEELQEELERLEEALEELREEL 470
|
250 260
....*....|....*....|..
gi 2462579920 865 EEAEMILKNMEMLLQEKVDKLK 886
Cdd:TIGR02168 471 EEAEQALDAAERELAQLQARLD 492
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
612-852 |
2.74e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.56 E-value: 2.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 612 EEGETKIALEREKDDMETKLLHLEDVVRALEKHVDLRENDRLEFH-----------RLSEENTLLKNDLGRVRQELEAAE 680
Cdd:COG1196 250 ELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLaelarleqdiaRLEERRRELEERLEELEEELAELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 681 STHDAQRKEIEVLKKDKEKACSEMEVLNRQNQNYKDQLSQLNVRVLQLGQEASTHQAQNEEHRVTIQMLTQSLEEVVRSG 760
Cdd:COG1196 330 EELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAE 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 761 QQQSDQIQKLRVELECLNQEHQSLQLPWSELTQTLEESQDQVQGAHLRLRQAQAQHLQEVRLVPQDRVAELHRLLSLQGE 840
Cdd:COG1196 410 EALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA 489
|
250
....*....|..
gi 2462579920 841 QARRRLDAQREE 852
Cdd:COG1196 490 AARLLLLLEAEA 501
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
630-933 |
5.65e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 53.59 E-value: 5.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 630 KLLHLEDVVRALEKHVDLRENDRLEFHRLSEENTLLKNDLGRvRQELEAAESTHDAQRKEIEVLKKDKEKACSEmevlnR 709
Cdd:pfam17380 273 QLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVER-RRKLEEAEKARQAEMDRQAAIYAEQERMAME-----R 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 710 QNQNYKDQLSQLNVRVLQLGQEASTHQAQNEEHRVTIQMLTQSLEEVVRsgqQQSDQIQKLRVELEclnQEHQSLQLPWS 789
Cdd:pfam17380 347 ERELERIRQEERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVR---QELEAARKVKILEE---ERQRKIQQQKV 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 790 ELTQTLEESQDQVQGAHLRLRQAQAQHLQEVRLVPQDRVAELHRLLSLQGEQARRRLDAQREEHEKQLKATEER-VEEAE 868
Cdd:pfam17380 421 EMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRkILEKE 500
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462579920 869 MILKNMEMLLQEKVDKLKEQFEKNTKSDLLLKELYVENAHLVRALQATEEKQRGAEKQSRLLEEK 933
Cdd:pfam17380 501 LEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEER 565
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
627-944 |
8.38e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.10 E-value: 8.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 627 METKLLHLEDVVRALEKHVDLrENDRL------------EFHRLSEENTLLKNDLGRVRQELEAAESTHDAQRK------ 688
Cdd:TIGR04523 216 LESQISELKKQNNQLKDNIEK-KQQEInektteisntqtQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKqlnqlk 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 689 -EIEVLKKDKEKACS------------EMEVLNRQNQNYKDQLSQLNVRVLQLGQEASTHQAQNEEHRVTIQMLTQSLEE 755
Cdd:TIGR04523 295 sEISDLNNQKEQDWNkelkselknqekKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEK 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 756 VVRSGQQQSDQIQKLRVELECLNQEHQSLQlpwsELTQTLEESQDQVQGAHLRLRQaQAQHLQEVRLVPQDRVAELHRLL 835
Cdd:TIGR04523 375 LKKENQSYKQEIKNLESQINDLESKIQNQE----KLNQQKDEQIKKLQQEKELLEK-EIERLKETIIKNNSEIKDLTNQD 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 836 SlQGEQARRRLDAQREEHEKQLKATEERVEEAEMILKNMEMLLQEKVDKLKEQFEKNTKSDLLLKELyvenahlvralqa 915
Cdd:TIGR04523 450 S-VKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDL------------- 515
|
330 340
....*....|....*....|....*....
gi 2462579920 916 teekqrgaEKQSRLLEEKVHALNKLVSRI 944
Cdd:TIGR04523 516 --------TKKISSLKEKIEKLESEKKEK 536
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
651-903 |
2.38e-06 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 51.17 E-value: 2.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 651 DRLEFHRLSEENTLLKNDLGRVRQELeaaeSTHDAQRKEIEvlkkdkEKACSEMEVLNRQNQNYKDQLSQLNVRVLQLGQ 730
Cdd:PHA02562 158 DLLDISVLSEMDKLNKDKIRELNQQI----QTLDMKIDHIQ------QQIKTYNKNIEEQRKKNGENIARKQNKYDELVE 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 731 EASTHQAQNEEhrvtiqmLTQSLEEVVRSGQQQSDQIQKLRVELECLNQEHQSLQlpwSEL------------TQTLEES 798
Cdd:PHA02562 228 EAKTIKAEIEE-------LTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQ---KVIkmyekggvcptcTQQISEG 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 799 QDQVQGAHLRLRQAQAQHLQEvrlvpQDRVAELHRLLSLQGEQARRRLDAQRE-EHEKQLKATEerVEEAEMILKNMEML 877
Cdd:PHA02562 298 PDRITKIKDKLKELQHSLEKL-----DTAIDELEEIMDEFNEQSKKLLELKNKiSTNKQSLITL--VDKAKKVKAAIEEL 370
|
250 260 270
....*....|....*....|....*....|....
gi 2462579920 878 LQEKVD------KLKEQFEK--NTKSDlLLKELY 903
Cdd:PHA02562 371 QAEFVDnaeelaKLQDELDKivKTKSE-LVKEKY 403
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
665-944 |
3.17e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.17 E-value: 3.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 665 LKNDLGRVRQELEAAESTHDAQRKEIEvlkkdkEKAcSEMEVLNRQNQNYKDQLSQLNVRVLQLGQEASTHQAQNEEHRV 744
Cdd:TIGR04523 340 LNEQISQLKKELTNSESENSEKQRELE------EKQ-NEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDE 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 745 TIQMLTQSLEEVVRSGQQQSDQIQKLRVELECLNQEHQSLQLPWSELTQTLEESQDQVQGAHLRLRQAQaQHLQEVRLVP 824
Cdd:TIGR04523 413 QIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIK-QNLEQKQKEL 491
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 825 QDRVAELHRLLS-----------LQGEQAR-----RRLDAQREEHEKQLKATEERVEEAEMILKNMEML-----LQEKVD 883
Cdd:TIGR04523 492 KSKEKELKKLNEekkeleekvkdLTKKISSlkekiEKLESEKKEKESKISDLEDELNKDDFELKKENLEkeideKNKEIE 571
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462579920 884 KLKEQFE----KNTKSDLLLKELYVENAHLVRALQATEEKQRGAEKQSRLLEEKVHALNKLVSRI 944
Cdd:TIGR04523 572 ELKQTQKslkkKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNI 636
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
659-894 |
1.30e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 1.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 659 SEENTLLKNDLGRVRQELEAAESTHDAQRKEIEVLKKDKEKACSEMEVLNRQNQNYKDQLSQLNVRVLQLGQEASTHQAQ 738
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 739 NEEHR-------VTIQMLTQSLEEVVRSGQQQSDQIQKLRVELECLNQEHQslqlpwsELTQTLEESQDQVQgahlRLRQ 811
Cdd:COG4942 99 LEAQKeelaellRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARR-------EQAEELRADLAELA----ALRA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 812 AQAQHLQEVRLVPQDRVAELHRLLSLQGEQAR--RRLDAQREEHEKQLKATEERVEEaemilknmemlLQEKVDKLKEQF 889
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKllARLEKELAELAAELAELQQEAEE-----------LEALIARLEAEA 236
|
....*
gi 2462579920 890 EKNTK 894
Cdd:COG4942 237 AAAAE 241
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
652-915 |
2.13e-05 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 48.20 E-value: 2.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 652 RLEFHRLSEENTLLKNDLG--RVRQELEAAESTHDAQ-----------RKEIEVLKK---DKEKACSEMEVLNRQNQNYK 715
Cdd:pfam05557 6 ESKARLSQLQNEKKQMELEhkRARIELEKKASALKRQldresdrnqelQKRIRLLEKreaEAEEALREQAELNRLKKKYL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 716 DQLSQLnvrvlqlgqeASTHQAQNEEHRVTIQMLTQSLEEVVRSGQQQSDQIQKLRVELECLNQEHQSLQLPWSELTQ-- 793
Cdd:pfam05557 86 EALNKK----------LNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQlr 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 794 -TLEESQDQVQGAHLRLR------QAQAQHLQEVRlvpqDRVAELHRLLSLQGEQARRRldaqreEHEKQLKATEERVEe 866
Cdd:pfam05557 156 qNLEKQQSSLAEAEQRIKelefeiQSQEQDSEIVK----NSKSELARIPELEKELERLR------EHNKHLNENIENKL- 224
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 2462579920 867 aemilknmemLLQEKVDKLKEQFEKNTKSDLLLKELYVENAHLVRALQA 915
Cdd:pfam05557 225 ----------LLKEEVEDLKRKLEREEKYREEAATLELEKEKLEQELQS 263
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
673-867 |
3.84e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 3.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 673 RQELEAAESTHDAQRKEIEVLKKDKEKACSEMEVLNRQNQNYKDQLSQLNVRVLQLGQEASTHQAQNEEHRVTIQMLTQS 752
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 753 LEEVVRSGQQQS--------------------------------DQIQKLRVELECLNQEHQSLQlpwsELTQTLEESQD 800
Cdd:COG4942 106 LAELLRALYRLGrqpplalllspedfldavrrlqylkylaparrEQAEELRADLAELAALRAELE----AERAELEALLA 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462579920 801 QVQGAHLRLRQAQAQHLQEVRLVPQDRVAELHRLLSLQgeQARRRLDAQREEHEKQLKATEERVEEA 867
Cdd:COG4942 182 ELEEERAALEALKAERQKLLARLEKELAELAAELAELQ--QEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
665-945 |
4.04e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.74 E-value: 4.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 665 LKNDLGRVRQELEAAEsthdaQRKEIEVLKKDKEKACS--EMEVLNRQNQNYKDQLSQLNVRVLQLGQEASTHQAQNEEH 742
Cdd:TIGR02168 198 LERQLKSLERQAEKAE-----RYKELKAELRELELALLvlRLEELREELEELQEELKEAEEELEELTAELQELEEKLEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 743 RVTIQMLTQSLEEVVRSGQQQSDQIQKLRVELECLNQEHQSLQLPWSELTQTLE--ESQDQVQGAHLRLRQAQAQHLQEV 820
Cdd:TIGR02168 273 RLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEelESKLDELAEELAELEEKLEELKEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 821 RLVPQDRVAELHRLLslqgEQARRRLDAQREEHE----------KQLKATEERVEEA----EMILKNMEMLLQEKVDKLK 886
Cdd:TIGR02168 353 LESLEAELEELEAEL----EELESRLEELEEQLEtlrskvaqleLQIASLNNEIERLearlERLEDRRERLQQEIEELLK 428
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 887 EQFEKNTK-SDLLLKELYVENAHLVRALQATEEKQRGAEKQSRLLEEKVHALNKLVSRIA 945
Cdd:TIGR02168 429 KLEEAELKeLQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQ 488
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
685-940 |
4.18e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.74 E-value: 4.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 685 AQRKEIEVLKKDKEKACSEMEVLNRQNQNYKDQLSQLNvrvlqlgQEASTHQAQNEEHRVTIQMLTQSLEEVVRSGQQQS 764
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELE-------EELEQLRKELEELSRQISALRKDLARLEAEVEQLE 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 765 DQIQKLRVELECLNQEHQslqlpwsELTQTLEESQD--QVQGAHLRLRQAQAQHLQEVRLVPQDRVAELHRLLSLQGEQA 842
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIE-------ELEERLEEAEEelAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA 819
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 843 rRRLDAQREEHEKQLKATEERVEEAEMILKNMEMLLQEKVDKLKEQFEKNTKSDLLLKELYVENAHLVRALQATEEKQRG 922
Cdd:TIGR02168 820 -ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEE 898
|
250
....*....|....*...
gi 2462579920 923 AEKQSRLLEEKVHALNKL 940
Cdd:TIGR02168 899 LSEELRELESKRSELRRE 916
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
518-905 |
6.75e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 6.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 518 ERDASQTQPRMPPLRPAASCGGQAERLQAIQEE--RARSWSRGTQE--QASEQQARAEGALEPGCHKHSVEVARRGSLPS 593
Cdd:PTZ00121 1397 KKKAEEDKKKADELKKAAAAKKKADEAKKKAEEkkKADEAKKKAEEakKADEAKKKAEEAKKAEEAKKKAEEAKKADEAK 1476
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 594 hlQLADPQGSWQEQLAAPEEGETKIALEREKDDMETKLLHLE--------DVVRALEKHVDLRENDRLEFHRLSEE---- 661
Cdd:PTZ00121 1477 --KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKkaeeakkaDEAKKAEEAKKADEAKKAEEKKKADElkka 1554
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 662 NTLLKNDLGRVRQELEAAESTHDAQRKEIEVLKKDKEKACSEMEVLNRQNQNYKDQlsqlNVRVLQLGQEASTHQAQNEE 741
Cdd:PTZ00121 1555 EELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAE----EAKKAEEAKIKAEELKKAEE 1630
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 742 HRVTIQMLTQSLEEVVRSGQQQSDQIQKLRVELECLNQEHQSLQLPWSELTQtlEESQDQVQGAHLRLRQAQAQHLQEVR 821
Cdd:PTZ00121 1631 EKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKK--AEEDEKKAAEALKKEAEEAKKAEELK 1708
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 822 LVPQDRVAELHRLLSLQGEQARRRLDAQREEHEKQLKATEERVEEAEmilknmemllQEKVDKLKEQFEKNTKSDLLLKE 901
Cdd:PTZ00121 1709 KKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEE----------KKKIAHLKKEEEKKAEEIRKEKE 1778
|
....
gi 2462579920 902 LYVE 905
Cdd:PTZ00121 1779 AVIE 1782
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
668-926 |
8.02e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 46.59 E-value: 8.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 668 DLGRVRQELEAAESTHDAQRKEI-EVLK----------------KDKEKACSEMEVLNRQNQNYKDQLSQ---------- 720
Cdd:PRK10929 24 DEKQITQELEQAKAAKTPAQAEIvEALQsalnwleerkgsleraKQYQQVIDNFPKLSAELRQQLNNERDeprsvppnms 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 721 ---LNVRVLQLGQE--ASTHQAQNEEHRvtIQMLTQSLEEVvrsGQQQSDqIQKLrvelecLNQEHQSLQLPWSELTqTL 795
Cdd:PRK10929 104 tdaLEQEILQVSSQllEKSRQAQQEQDR--AREISDSLSQL---PQQQTE-ARRQ------LNEIERRLQTLGTPNT-PL 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 796 EESQDQVQGAHLRLRQAQAQHLQEVRLVPQDRvAELHRLLSLQGEQARRRLDAQREEHEKQLKAteERVEEAEMILKNME 875
Cdd:PRK10929 171 AQAQLTALQAESAALKALVDELELAQLSANNR-QELARLRSELAKKRSQQLDAYLQALRNQLNS--QRQREAERALESTE 247
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 2462579920 876 MLLQEKVD---KLKEQFEKNtksdlllKELYVENAHLVRALQATEEKQRGAEKQ 926
Cdd:PRK10929 248 LLAEQSGDlpkSIVAQFKIN-------RELSQALNQQAQRMDLIASQQRQAASQ 294
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
716-950 |
1.11e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 716 DQLSQLNVRVLQLGQEASTHQAQNEEHRVTIQMLTQSLEEVVRSGQQQSDQIQKLRVELECLNQEHQSLQLPWSELTQTL 795
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 796 EESQDQVqGAHLRLRQAQAQHLQEVRLVPQDRVAELHRLLSLQGEQARRRLDaQREEHEKQLKATEERVEEAEMILKNME 875
Cdd:COG4942 100 EAQKEEL-AELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARRE-QAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462579920 876 MLLQEKVDKLKEQFEKNTKSDLLLKELYVENAHLVRALQATEEKQRGAEKQSRLLEEKVHALNKLVSRIAPAALS 950
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALK 252
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
666-937 |
2.72e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 2.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 666 KNDLGRVRQELEAAESTHDAQRKEIEVLKKDKEKAcsemevlnrqnQNYKDQLSQL-NVRVLQLGQEASTHQAQNEEHRV 744
Cdd:TIGR02169 176 LEELEEVEENIERLDLIIDEKRQQLERLRREREKA-----------ERYQALLKEKrEYEGYELLKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 745 TIQMLTQSLEEVVRSGQQQSDQIQKLRVELECLN--------QEHQSLQLPWSELTQTLEESQDQVQGAHLRLRQAQAQH 816
Cdd:TIGR02169 245 QLASLEEELEKLTEEISELEKRLEEIEQLLEELNkkikdlgeEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERL 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 817 lqevrlvpQDRVAELHRLLSlQGEQARRRLDAQREEHEKQLKATEERVEEAEMILKNMEML---LQEKVDKLKEQFEKNT 893
Cdd:TIGR02169 325 --------AKLEAEIDKLLA-EIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVdkeFAETRDELKDYREKLE 395
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 2462579920 894 KSDLLLKELYVENAHLVRALQATEEKQRGAEKQSRLLEEKVHAL 937
Cdd:TIGR02169 396 KLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINEL 439
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
606-934 |
3.09e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.67 E-value: 3.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 606 EQLAAPEEGETKIALEREK-DDMETKLLHLEDVVRALEKHVDLRENDRLEFHRLSE--------ENTLLKNDLGRVRQEL 676
Cdd:TIGR02169 160 DEIAGVAEFDRKKEKALEElEEVEENIERLDLIIDEKRQQLERLRREREKAERYQAllkekreyEGYELLKEKEALERQK 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 677 EAAESTHDAQRKEIEVLKKDKEKACSEMEVLNRqnqnykdQLSQLNVRVLQLGQ-EASTHQAQNEEHRVTIQMLTQSLEE 755
Cdd:TIGR02169 240 EAIERQLASLEEELEKLTEEISELEKRLEEIEQ-------LLEELNKKIKDLGEeEQLRVKEKIGELEAEIASLERSIAE 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 756 VVRSGQQQSDQIQKLRVELECLNQEHQ--------------SLQLPWSELTQTLEESQDQVQ---GAHLRLRQAQAQHLQ 818
Cdd:TIGR02169 313 KERELEDAEERLAKLEAEIDKLLAEIEelereieeerkrrdKLTEEYAELKEELEDLRAELEevdKEFAETRDELKDYRE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 819 EVRLVpQDRVAELHRLLSLQGEQArRRLDAQREEHEKQLKATEERVEEAEMILKNMEMLLQEKVDKLKEQFEKNTKSDLL 898
Cdd:TIGR02169 393 KLEKL-KREINELKRELDRLQEEL-QRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQE 470
|
330 340 350
....*....|....*....|....*....|....*.
gi 2462579920 899 LKELYVENAHLVRALQATEEKQRGAEKQSRLLEEKV 934
Cdd:TIGR02169 471 LYDLKEEYDRVEKELSKLQRELAEAEAQARASEERV 506
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
683-948 |
3.36e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.67 E-value: 3.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 683 HDAQRKEIEVLKKDKEKACS---EMEVLNRQNQNYKDQLSQLNVRVLQLGQEASTHQAQNEEHRVTIQMLTQSLEEVVRS 759
Cdd:TIGR02169 659 SRAPRGGILFSRSEPAELQRlreRLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKER 738
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 760 GQQQSDQIQKLRVELECLNQEHQSLQLPWSELTQTLEESQDQVQGAHLRLRQAQAQHLQ-EVRLVPQDRVAELHRLLSLQ 838
Cdd:TIGR02169 739 LEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQaELSKLEEEVSRIEARLREIE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 839 GEQARRRLDAQREEHEKQ-LKATEERVEEAEMILKNMEMLLQEKVDKLKEQFEKNTKSdllLKELYVENAHLVRALQATE 917
Cdd:TIGR02169 819 QKLNRLTLEKEYLEKEIQeLQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAA---LRDLESRLGDLKKERDELE 895
|
250 260 270
....*....|....*....|....*....|.
gi 2462579920 918 EKQRGAEKQSRLLEEKVHALNKLVSRIAPAA 948
Cdd:TIGR02169 896 AQLRELERKIEELEAQIEKKRKRLSELKAKL 926
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
540-897 |
4.59e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.06 E-value: 4.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 540 QAERLQAIQEERARSWSRGTQEQASEQQARAEGALEPGchKHSVEVARRGSLPSHL---QLADPQGSWQEQLAAPEEGET 616
Cdd:pfam12128 600 EELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKA--SREETFARTALKNARLdlrRLFDEKQSEKDKKNKALAERK 677
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 617 KIALEREKD-DMETKLLHLEDVVRALEKHVDLRENDRLEFHRLSEENTLLKNDLGRVRQELEAAESTHDAQRKEIEvlkk 695
Cdd:pfam12128 678 DSANERLNSlEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALE---- 753
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 696 dkekacsemevlnrqnQNYKDQLSQLNV---RVLQLGQEasthqaqneehrvtIQMLTQSLEEVVRSGQQQSDQIQKLRv 772
Cdd:pfam12128 754 ----------------TWYKRDLASLGVdpdVIAKLKRE--------------IRTLERKIERIAVRRQEVLRYFDWYQ- 802
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 773 elECLNQEHQSLQLPWSELTQTLEESQDQV--QGAHLRLRQAQAQHLQEVRLVPQDRVAELHRLL-SLQGEQARRRLDAQ 849
Cdd:pfam12128 803 --ETWLQRRPRLATQLSNIERAISELQQQLarLIADTKLRRAKLEMERKASEKQQVRLSENLRGLrCEMSKLATLKEDAN 880
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 2462579920 850 REEHEKQLKATEERVEEAEMILKNMEMLLQEKVDKLKEQFEKNTKSDL 897
Cdd:pfam12128 881 SEQAQGSIGERLAQLEDLKLKRDYLSESVKKYVEHFKNVIADHSGSGL 928
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
646-934 |
4.68e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 44.12 E-value: 4.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 646 DLRENDRLEFHRLSEENTLLKNDlGRVR--QELEAAESTHDAQRKEIEVLKKDKEKACSEM----------EVLNRQNQN 713
Cdd:PLN02939 127 DFQLEDLVGMIQNAEKNILLLNQ-ARLQalEDLEKILTEKEALQGKINILEMRLSETDARIklaaqekihvEILEEQLEK 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 714 YKDQLSQLNVR----VLQLGQEASTHQAQNEEHRVTIQMLTQSLEEVVRSGQQqsdqiqklrveLECLNQEHQSLQLPWS 789
Cdd:PLN02939 206 LRNELLIRGATeglcVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEER-----------VFKLEKERSLLDASLR 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 790 ELTQTLEESQDQVqgahLRLRQAQAQHLQEvrlvpqdRVAELHRLLSL---QGEQARRRLDaQREEHEKQLKATEERVEE 866
Cdd:PLN02939 275 ELESKFIVAQEDV----SKLSPLQYDCWWE-------KVENLQDLLDRatnQVEKAALVLD-QNQDLRDKVDKLEASLKE 342
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 867 AEMILKNMEM--LLQEKVDKLKEQFEKNTKSDLLLKELYvenAHLVRALQATEEKQRgAEKQSRLLEEKV 934
Cdd:PLN02939 343 ANVSKFSSYKveLLQQKLKLLEERLQASDHEIHSYIQLY---QESIKEFQDTLSKLK-EESKKRSLEHPA 408
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
552-942 |
5.33e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.95 E-value: 5.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 552 ARSWSRGTQEQAS--EQQARAEGALEPgCHKHSVEvARRGSLPSHLQLA-----DPQGSWQEQLAAPEEGETKIALEREK 624
Cdd:pfam15921 290 ARSQANSIQSQLEiiQEQARNQNSMYM-RQLSDLE-STVSQLRSELREAkrmyeDKIEELEKQLVLANSELTEARTERDQ 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 625 DDMETKllHLEDVVRALEKHVDLREND----RLEFHRLSEENTLLKNDLGRVRQELEaaESTHDAQRKEiEVLKKDKEKA 700
Cdd:pfam15921 368 FSQESG--NLDDQLQKLLADLHKREKElsleKEQNKRLWDRDTGNSITIDHLRRELD--DRNMEVQRLE-ALLKAMKSEC 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 701 CSEMEVLNRQNQNYKDQLSQLNVRVLQLG----------QEASTHQAQNEEHRVTIQMLTQSLEEVVRSGQQQSDQIQKL 770
Cdd:pfam15921 443 QGQMERQMAAIQGKNESLEKVSSLTAQLEstkemlrkvvEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKL 522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 771 RVELECLNQEHQSLqlpwseltqtleesqdQVQGAHLRLRQAQAQHLQeVRLVPQDRVAELHR-----LLSLQGEQARRR 845
Cdd:pfam15921 523 RSRVDLKLQELQHL----------------KNEGDHLRNVQTECEALK-LQMAEKDKVIEILRqqienMTQLVGQHGRTA 585
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 846 LDAQREEHEKQLKATEERVEeaemiLKNMEMLLQEKVDKLKEQFEKntKSDLLLKELYVENAHLVRALQATEEKQrgaeK 925
Cdd:pfam15921 586 GAMQVEKAQLEKEINDRRLE-----LQEFKILKDKKDAKIRELEAR--VSDLELEKVKLVNAGSERLRAVKDIKQ----E 654
|
410
....*....|....*..
gi 2462579920 926 QSRLLEEKVHALNKLVS 942
Cdd:pfam15921 655 RDQLLNEVKTSRNELNS 671
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
8-889 |
5.41e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.89 E-value: 5.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 8 LHLEQGYRERLSLLRSEVEAERELFWEQAHRQRAALEWD-----VGRLQAEEAGLREKLTLALKENSRLQKEIVEVVEKL 82
Cdd:TIGR02168 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEelrleVSELEEEIEELQKELYALANEISRLEQQKQILRERL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 83 SDSERLALKLQKDLEFVLKDK---------LEPQSAELLAQEERFAAVLKEYELKCRDLQDRNDELQAELEGLWARLpkn 153
Cdd:TIGR02168 312 ANLERQLEELEAQLEELESKLdelaeelaeLEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV--- 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 154 rhspswspDGRRRQLpglgpagisflgnsapvsietelmmeqvkehyqdlrTQLETKVNYYEREIAALKRNFEKERKDME 233
Cdd:TIGR02168 389 --------AQLELQI------------------------------------ASLNNEIERLEARLERLEDRRERLQQEIE 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 234 QARRREVsvlEGQKADLEELHEKSQEVIWGLQEQLQDTARGPEPEQMGLAPcCTQALCGLALRHHSHlqQIRREAEAELS 313
Cdd:TIGR02168 425 ELLKKLE---EAELKELQAELEELEEELEELQEELERLEEALEELREELEE-AEQALDAAERELAQL--QARLDSLERLQ 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 314 GELSGLGAlpARRDLTLELEEPPQGPLPRGSQRSEQLELERALKLqpcASEKRAQMCVSLALEEEEL------ELARGKR 387
Cdd:TIGR02168 499 ENLEGFSE--GVKALLKNQSGLSGILGVLSELISVDEGYEAAIEA---ALGGRLQAVVVENLNAAKKaiaflkQNELGRV 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 388 VDGPSLEAEMQALPKDGLVAGSGQEGTRGLLPLRPGCGERPLAWLAP--GDGRESEEAAGAGPRRRQaqdteatqspapa 465
Cdd:TIGR02168 574 TFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYllGGVLVVDDLDNALELAKK------------- 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 466 papasHGPSERWsrmqpCGVDGDIVPKEpepfGASAAGleqPGARELPLLGTERDASQTQPRMPPLRPAASCGGQAerLQ 545
Cdd:TIGR02168 641 -----LRPGYRI-----VTLDGDLVRPG----GVITGG---SAKTNSSILERRREIEELEEKIEELEEKIAELEKA--LA 701
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 546 AIQEERARSWSRGTQEQASEQQARAE-GALEPGCHKHSVEVARRGSLPSHLQLADPQGSWQEQLAAPEEGETKIALEREK 624
Cdd:TIGR02168 702 ELRKELEELEEELEQLRKELEELSRQiSALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE 781
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 625 DDMETkllhLEDVVRALEkhvDLRENDRLEFHRLSEENTLLKNDLGRVRQELEAAESTHDAQRKEIEVLKKDKEKACSEM 704
Cdd:TIGR02168 782 AEIEE----LEAQIEQLK---EELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 705 EVLNRQNQNYKDQLSQLNVRVLQLGQEASTHQAQNEEHRVTIQMLTQSLEEVvrsgqqqSDQIQKLRVELECLNQEHQSL 784
Cdd:TIGR02168 855 ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELREL-------ESKRSELRRELEELREKLAQL 927
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 785 QLPWSELTQTLEESQDQVQGAHLRLRQAQAQHLQEVRLVP---QDRVAELHRLLS------------LQGEQARRR-LDA 848
Cdd:TIGR02168 928 ELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEeeaRRRLKRLENKIKelgpvnlaaieeYEELKERYDfLTA 1007
|
890 900 910 920
....*....|....*....|....*....|....*....|.
gi 2462579920 849 QREEHEKQLKATEERVEEaemILKNMEMLLQEKVDKLKEQF 889
Cdd:TIGR02168 1008 QKEDLTEAKETLEEAIEE---IDREARERFKDTFDQVNENF 1045
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
619-785 |
6.46e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 6.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 619 ALEREKDDMETKLLHLEDVVRALEKHVDLREN---------------DRLEFHRLSEENTLLKNDLGRVRQELEAAESTH 683
Cdd:COG4913 239 RAHEALEDAREQIELLEPIRELAERYAAARERlaeleylraalrlwfAQRRLELLEAELEELRAELARLEAELERLEARL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 684 DAQRKEIEVLK--------KDKEKACSEMEVLNRQNQNYKDQLSQLNVRVLQLGQEASTHQAQNEEHRVTIQMLTQSLEE 755
Cdd:COG4913 319 DALREELDELEaqirgnggDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEE 398
|
170 180 190
....*....|....*....|....*....|....
gi 2462579920 756 VVRSGQQQ----SDQIQKLRVELECLNQEHQSLQ 785
Cdd:COG4913 399 ELEALEEAlaeaEAALRDLRRELRELEAEIASLE 432
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
619-804 |
1.19e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 619 ALEREKDDMETKLLHLE-DVVRALEKHVDLR---ENDRLEFHRLSEENTLLKNDLGRVRQELEAAESTHDAQRKEIEVLK 694
Cdd:TIGR02169 312 EKERELEDAEERLAKLEaEIDKLLAEIEELEreiEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 695 KDKEKACSEMEVLNRQNQNYKDQLSQLNVRVLQLGQEASTHQAQ-------NEEHRVTIQMLTQSLEEVVRSGQQQSDQI 767
Cdd:TIGR02169 392 EKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKineleeeKEDKALEIKKQEWKLEQLAADLSKYEQEL 471
|
170 180 190
....*....|....*....|....*....|....*..
gi 2462579920 768 QKLRVELECLNQEHQSLQLPWSELTQTLEESQDQVQG 804
Cdd:TIGR02169 472 YDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRG 508
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
640-944 |
1.21e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.98 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 640 ALEKHVDLRENDRLEFHRLseENTLL--------KNDLGRVRQELEAAESTHDAQRKEIEVLKKDKEKACS--------- 702
Cdd:PRK11281 47 ALNKQKLLEAEDKLVQQDL--EQTLAlldkidrqKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRetlstlslr 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 703 --EMEVLNRQN--QNYKDQLSQLNVRVLqlGQEASTHQAQNE--EHRVTIQMLTQSLEEVVRSGQQQS-DQIQKLRVELE 775
Cdd:PRK11281 125 qlESRLAQTLDqlQNAQNDLAEYNSQLV--SLQTQPERAQAAlyANSQRLQQIRNLLKGGKVGGKALRpSQRVLLQAEQA 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 776 CLNQ--EHQSLQLPWSELTQTLEESQDQVQGAHLRLRQAQAQHLQEVRlvpqdrvaelhrllslqgeqarrrldaqreeH 853
Cdd:PRK11281 203 LLNAqnDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAI-------------------------------N 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 854 EKQLKATEERVEEAEmilkNMEMLLQEKVDKL-KEQFEKNTK-SDLLLK-----------ELYVENAhLVRALQATeekq 920
Cdd:PRK11281 252 SKRLTLSEKTVQEAQ----SQDEAARIQANPLvAQELEINLQlSQRLLKateklntltqqNLRVKNW-LDRLTQSE---- 322
|
330 340
....*....|....*....|....*.
gi 2462579920 921 rgaekqsRLLEEKVHALNK--LVSRI 944
Cdd:PRK11281 323 -------RNIKEQISVLKGslLLSRI 341
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
616-944 |
1.26e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.70 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 616 TKIALErEKDDMETKLLhLEDVVRALEKhvDLRENDRLEFHRLSEentllkndLGRVRQELEAAESTHDAQRKEIEVLKK 695
Cdd:TIGR04523 106 SKINSE-IKNDKEQKNK-LEVELNKLEK--QKKENKKNIDKFLTE--------IKKKEKELEKLNNKYNDLKKQKEELEN 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 696 DKEKACSEMEVLNRQNQNYKDQLSQLNVRVLQLgqeasthQAQNEEHRvtiqMLTQSLEEVVRSGQQQSDQIQKLRVELE 775
Cdd:TIGR04523 174 ELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNL-------KKKIQKNK----SLESQISELKKQNNQLKDNIEKKQQEIN 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 776 CLNQEHQSLQLPWSELTQTLEESQDQVQGAHLRLRQAQAQHLQEvrlvpQDRVAELHRLLSLQGEQARRRLDaqrEEHEK 855
Cdd:TIGR04523 243 EKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKEL-----EKQLNQLKSEISDLNNQKEQDWN---KELKS 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 856 QLKATEERVEEAEMILKNMEmllqEKVDKLKEQFEKNTKSdllLKELYVENAHLVRALqatEEKQRGAEKQSRLLEEKVH 935
Cdd:TIGR04523 315 ELKNQEKKLEEIQNQISQNN----KIISQLNEQISQLKKE---LTNSESENSEKQREL---EEKQNEIEKLKKENQSYKQ 384
|
....*....
gi 2462579920 936 ALNKLVSRI 944
Cdd:TIGR04523 385 EIKNLESQI 393
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
751-951 |
1.41e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.74 E-value: 1.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 751 QSLEEVVRSGQQQSDQIQKLRVELECLNQEHQSLQLPWSELTQTLEESQDQVQGAHLRLRQAQAQHLQEvrlvpQDRVAE 830
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL-----EERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 831 LHRLLSLQGEQaRRRLDAQREEHEKQLKATEERVEEaemilknmemlLQEKVDKLKEQFEKNTKS-DLLLKELYVENAHL 909
Cdd:TIGR02168 752 LSKELTELEAE-IEELEERLEEAEEELAEAEAEIEE-----------LEAQIEQLKEELKALREAlDELRAELTLLNEEA 819
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 2462579920 910 VRALQATEEKQRGAEKQSRLLEEKVHALNKLVSRIAPAALSV 951
Cdd:TIGR02168 820 ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEI 861
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
684-867 |
1.61e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 1.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 684 DAQRKeIEVLKKDKEKACSEMEVLNRQNQNYKDQLSQLNVR--VLQLGQEASTHQAQNEEHRVTIQMLTQSLEEVVRSgq 761
Cdd:COG4913 607 DNRAK-LAALEAELAELEEELAEAEERLEALEAELDALQERreALQRLAEYSWDEIDVASAEREIAELEAELERLDAS-- 683
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 762 qqSDQIQKLRVELECLNQEHQSLQLPWSELTQTLEESQDQVQGAHLRLRQAQAQHLQEVRLVPQDRVAEL-----HRLLS 836
Cdd:COG4913 684 --SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLeerfaAALGD 761
|
170 180 190
....*....|....*....|....*....|.
gi 2462579920 837 LQGEQARRRLDAQREEHEKQLKATEERVEEA 867
Cdd:COG4913 762 AVERELRENLEERIDALRARLNRAEEELERA 792
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
674-944 |
3.00e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.49 E-value: 3.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 674 QELEAAESTHDAQRKEIEVLKKDKEKACSEMEVLNRQNQNYK---DQLSQLNVRVLQLGQEasthqaqNEEHRVTIQMLT 750
Cdd:TIGR00618 542 TSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKediPNLQNITVRLQDLTEK-------LSEAEDMLACEQ 614
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 751 QSLEEvvrsgqQQSDQIQKLRVELEcLNQEHQSLQLPWSELTQTLEE-SQDQVQGAHLRLRQAQAQHLQEVRLVPQdRVA 829
Cdd:TIGR00618 615 HALLR------KLQPEQDLQDVRLH-LQQCSQELALKLTALHALQLTlTQERVREHALSIRVLPKELLASRQLALQ-KMQ 686
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 830 ELHRLLSLQGEQARRRLDAQREEHEKQLKATEERVEEAEMILKNMEMLLQEKVDKLKEQFEKNTKSDLLLKELyvENAHL 909
Cdd:TIGR00618 687 SEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKAR--TEAHF 764
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 2462579920 910 VRALQATEEKQRGAE---------KQSRLLEEKVHALNKLVSRI 944
Cdd:TIGR00618 765 NNNEEVTAALQTGAElshlaaeiqFFNRLREEDTHLLKTLEAEI 808
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
674-948 |
3.03e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.04 E-value: 3.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 674 QELEAAESTHDAQRKEIEVLKKDKEKACSEMEVLNRQNQNYKDQLSQLNVRVLQLGQEASTHQAQNEEHRVTIQMLTQSL 753
Cdd:COG4372 31 EQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEA 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 754 EEVVRSGQQQSDQIQKLRVELECLNQEHQSLQLPWSELTQTLEESQDQVQGAHLRLRQAQAQHLQEVRLVPQDRVAELHR 833
Cdd:COG4372 111 EELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLK 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 834 LLSLQGEQARRRLDAQREEHEKQLKATEERVEEAEMILKNMEMLLQEKVDKLKEQFEKNTKSDLLLKELYVENAHLVRAL 913
Cdd:COG4372 191 EANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVE 270
|
250 260 270
....*....|....*....|....*....|....*
gi 2462579920 914 QATEEKQRGAEKQSRLLEEKVHALNKLVSRIAPAA 948
Cdd:COG4372 271 KDTEEEELEIAALELEALEEAALELKLLALLLNLA 305
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
615-938 |
3.93e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.19 E-value: 3.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 615 ETKIALEREKDDMETKLLHLEDVVRALEKHVDLRENDRLEFHRLSEentLLKNDLGRVRQELEAAESTHDAQRKEIEVLK 694
Cdd:TIGR00606 688 QTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAP---GRQSIIDLKEKEIPELRNKLQKVNRDIQRLK 764
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 695 KDKEKACSEMEVLNRQNQNYKDQLSQLNVrvlqlgqeasthqaqneehrvtIQMLTQSLEEVVRSGQQQSDQIQKLRVEL 774
Cdd:TIGR00606 765 NDIEEQETLLGTIMPEEESAKVCLTDVTI----------------------MERFQMELKDVERKIAQQAAKLQGSDLDR 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 775 EC--LNQEHQSLQLPWSELTQTLEESQDQVQGahlrlRQAQAQHLQEvrlvpqdRVAEL--HRLLSLQGEQARRRLDAQR 850
Cdd:TIGR00606 823 TVqqVNQEKQEKQHELDTVVSKIELNRKLIQD-----QQEQIQHLKS-------KTNELksEKLQIGTNLQRRQQFEEQL 890
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 851 EEHEKQLK----ATEERVEEAEMILKNMEMLLQEKVDKLKEQFEKNTKSDLLLKELYVENAHLVRALQATEEK-QRGAEK 925
Cdd:TIGR00606 891 VELSTEVQslirEIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKiQDGKDD 970
|
330
....*....|...
gi 2462579920 926 QSRLLEEKVHALN 938
Cdd:TIGR00606 971 YLKQKETELNTVN 983
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
545-948 |
4.10e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.09 E-value: 4.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 545 QAIQEERARSWSRgtQEQASEQQARAEGALEPGCHKhsvevARRGSLPSHLQLA-DPQGSWQEQLAAPEegetkiALERE 623
Cdd:COG3096 286 RALELRRELFGAR--RQLAEEQYRLVEMARELEELS-----ARESDLEQDYQAAsDHLNLVQTALRQQE------KIERY 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 624 KDDMETKLLHLEDVVRALEKHVDLRENDRLEFHRLSEENTLLKNDLGRVRQELEAAESTHDAQRKEIEVLkkDKEKACSE 703
Cdd:COG3096 353 QEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTRAIQYQQAVQAL--EKARALCG 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 704 MEVLNRQN-----QNYKDQLSQLNVRVLQLGQEASTHQAQNEEHRVTIQMLTQSLEEVVRS--GQQQSDQIQKLRvELEC 776
Cdd:COG3096 431 LPDLTPENaedylAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKIAGEVERSqaWQTARELLRRYR-SQQA 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 777 LNQEHQSLQLPWSELTQTLEESQDQVqgahlRLRQAQAQHLQEVRlvpqDRVAELHRLLSlqgeqarrRLDAQREEHEKQ 856
Cdd:COG3096 510 LAQRLQQLRAQLAELEQRLRQQQNAE-----RLLEEFCQRIGQQL----DAAEELEELLA--------ELEAQLEELEEQ 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 857 LKATEERVEEAEMILKNMEMLLQEKVDKLKEQFEKNTKSDLLLKEL--YVENAHLV-RALQATEEKQRGAEKQSRLLEEK 933
Cdd:COG3096 573 AAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALERLREQSgeALADSQEVtAAMQQLLEREREATVERDELAAR 652
|
410
....*....|....*
gi 2462579920 934 VHALNKLVSRIAPAA 948
Cdd:COG3096 653 KQALESQIERLSQPG 667
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
647-880 |
5.95e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.39 E-value: 5.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 647 LRENDRLEFHRLSEENTLLKNDLGRVRQELEAAEsthdaqrKEIEVLKKDkekacSEMEVLNRQNQNYKDQLSQLNVRVL 726
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAE-------AALEEFRQK-----NGLVDLSEEAKLLLQQLSELESQLA 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 727 QLGQEASTHQAQNEEHRVTIQMLTQSLEEVvrsgqQQSDQIQKLRVELECLNQEhqslqlpWSELTQTLEESQDQVQGAH 806
Cdd:COG3206 230 EARAELAEAEARLAALRAQLGSGPDALPEL-----LQSPVIQQLRAQLAELEAE-------LAELSARYTPNHPDVIALR 297
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462579920 807 LRLRQAQAQHLQEVRLVPQDRVAEL----HRLLSLQGEQARRRLDAQRE-EHEKQLKATEERVEEAEMILKNMEMLLQE 880
Cdd:COG3206 298 AQIAALRAQLQQEAQRILASLEAELealqAREASLQAQLAQLEARLAELpELEAELRRLEREVEVARELYESLLQRLEE 376
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
619-775 |
6.49e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 6.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 619 ALEREKDDMETKLLHLEDVVRALEKHVDLRENDRLEFHRLSEENTL------LKNDLGRVRQELEAAESTHD-------- 684
Cdd:COG4913 614 ALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDeidvasAEREIAELEAELERLDASSDdlaaleeq 693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 685 --AQRKEIEVLKKDKEKACSEMEVLNRQNQNYKDQLSQLNVRVLQLGQEASTHQAQNEEHRVTIQMLTQSLEEVVRSGQQ 762
Cdd:COG4913 694 leELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEE 773
|
170
....*....|...
gi 2462579920 763 QSDQIQKLRVELE 775
Cdd:COG4913 774 RIDALRARLNRAE 786
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
540-903 |
7.48e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.11 E-value: 7.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 540 QAERLQAIQEERARSWSRGTQEQASEQQARAegalepgchkhsvEVARRGSLPSHlqladpqgswQEQLAAPEEGE-TKI 618
Cdd:pfam17380 297 EQERLRQEKEEKAREVERRRKLEEAEKARQA-------------EMDRQAAIYAE----------QERMAMERERElERI 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 619 ALEREKDDMETklLHLEDVVRALEKhvdLRENDRLEFHRLSeentllKNDlgRVRQELEAAesthdaqrKEIEVLKKDKE 698
Cdd:pfam17380 354 RQEERKRELER--IRQEEIAMEISR---MRELERLQMERQQ------KNE--RVRQELEAA--------RKVKILEEERQ 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 699 KACSEMEVLNRQNQNYKDQLSQLNVRVLQLGQEASTHQAQNEEHRVTIQM-LTQSLEEVVRSGQQQSDQIQKLRVELECL 777
Cdd:pfam17380 413 RKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVeRLRQQEEERKRKKLELEKEKRDRKRAEEQ 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 778 NQEHQSLQLPWSELTQTLEESQDQVQGAHLRLRQAQAQHLQEVRLVPQDRvaelhrllslqgeQARRRLDAQREEHEKQL 857
Cdd:pfam17380 493 RRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEER-------------RKQQEMEERRRIQEQMR 559
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 2462579920 858 KATEERvEEAEMILKNMEMLLQEKVDKLKEQFEKNTKSDLLLKELY 903
Cdd:pfam17380 560 KATEER-SRLEAMEREREMMRQIVESEKARAEYEATTPITTIKPIY 604
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
605-939 |
8.04e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.02 E-value: 8.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 605 QEQLAAPEEGETKIA-LEREKDDMETKLLHLEDVVRALEKHVDLRENDRLEfhrLSEENTLLKNDLGRVRQELEAAESTH 683
Cdd:PRK02224 240 DEVLEEHEERREELEtLEAEIEDLRETIAETEREREELAEEVRDLRERLEE---LEEERDDLLAEAGLDDADAEAVEARR 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 684 DAQRKEIEVLKKDKEKACSEMEVLNRQNQNYKDQLSQLNVRVLQLGQEASTHQAQNEEHRVTIQMLTQSLEEVVRSGQQQ 763
Cdd:PRK02224 317 EELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEEL 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 764 SDQIQKLRVELECLNQEHQSLQLPWSELTQTLEESQDQVQGAHLRLRQAQA-----------QHLQEVRLVP-----QDR 827
Cdd:PRK02224 397 RERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEAlleagkcpecgQPVEGSPHVEtieedRER 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 828 VAELHRLLslqgEQARRRLDAQREEHE--KQLKATEERVEEAEMILKNMEMLLQEKVDKLKEQFEKntksdllLKELYVE 905
Cdd:PRK02224 477 VEELEAEL----EDLEEEVEEVEERLEraEDLVEAEDRIERLEERREDLEELIAERRETIEEKRER-------AEELRER 545
|
330 340 350
....*....|....*....|....*....|....
gi 2462579920 906 NAHLVRALQATEEKQRGAEKQSRLLEEKVHALNK 939
Cdd:PRK02224 546 AAELEAEAEEKREAAAEAEEEAEEAREEVAELNS 579
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
611-716 |
8.16e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 39.84 E-value: 8.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462579920 611 PEEGETKIALEREKDDMETKLLHLEDVVRALEKHV-DLREndrlEFHRLSEENTLLKNDLGRVRQELEA-AESTHDAQR- 687
Cdd:COG2433 395 PEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVeELEA----ELEEKDERIERLERELSEARSEERReIRKDREISRl 470
|
90 100 110
....*....|....*....|....*....|
gi 2462579920 688 -KEIEVLKKDKEKACSEMEVLNRQNQNYKD 716
Cdd:COG2433 471 dREIERLERELEEERERIEELKRKLERLKE 500
|
|
| |
