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Conserved domains on  [gi|2462567765|ref|XP_054178146|]
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procollagen galactosyltransferase 1 isoform X3 [Homo sapiens]

Protein Classification

glycosyltransferase family 25 protein( domain architecture ID 10007174)

glycosyltransferase family 25 protein may be involved in lipopolysaccharide (LPS) biosynthesis, facilitating the transfer of one of a variety of sugars onto a growing LPS chain, such as lacto-N-neotetraose biosynthesis glycosyltransferase LgtB, which adds the second galactose to the lacto-N-tetraose chain in lipooligosaccharide (LOS)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
COG3306 COG3306
Glycosyltransferase involved in LPS biosynthesis, GR25 family [Cell wall/membrane/envelope ...
64-326 2.67e-38

Glycosyltransferase involved in LPS biosynthesis, GR25 family [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442535 [Multi-domain]  Cd Length: 238  Bit Score: 136.28  E-value: 2.67e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462567765  64 VFMINLRRRQDRRERMLRALQAQEIECRLVEAVDGKAMNTSQVEALGiqmlPGYRDPYHGRPLTKGELGCFLSHYNIWKE 143
Cdd:COG3306     3 IFVINLDRSTERREHIEAQLARLGLDFEFFDAVDGRDLSEEELARYD----RAKALRRYGRPLTPGEIGCFLSHRKAWQK 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462567765 144 VVDRGLQKSLVFEDDlrfeIFFKRRLMNLMRDVEREGLDWDLIYVGRKRMQVEHPEKAVPRV--RNLVEADYSYW-TLAY 220
Cdd:COG3306    79 IVESGLPYALILEDD----VILSPDFAEVLEALAWLPADWDIVKLETSKRKVFLGRRKIKKLggYRLVRPYSPPLgTAGY 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462567765 221 VISLQGARKLLA-AEPLSkmLPVDEFLPvmfdkhpvseykaHFSLRNLHAFSVEPLLIYPthytGDDGYVSDTEtsvvwn 299
Cdd:COG3306   155 LISRKAAKKLLAlLEPID--RPVDDFLF-------------RFWLHGLRVYQVRPALVIQ----DSGLLGSTIE------ 209
                         250       260
                  ....*....|....*....|....*..
gi 2462567765 300 nehvktDWDRAKSQKMREQQALSREAK 326
Cdd:COG3306   210 ------AERRRKKRKRRLWDKLRRELR 230
 
Name Accession Description Interval E-value
COG3306 COG3306
Glycosyltransferase involved in LPS biosynthesis, GR25 family [Cell wall/membrane/envelope ...
64-326 2.67e-38

Glycosyltransferase involved in LPS biosynthesis, GR25 family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442535 [Multi-domain]  Cd Length: 238  Bit Score: 136.28  E-value: 2.67e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462567765  64 VFMINLRRRQDRRERMLRALQAQEIECRLVEAVDGKAMNTSQVEALGiqmlPGYRDPYHGRPLTKGELGCFLSHYNIWKE 143
Cdd:COG3306     3 IFVINLDRSTERREHIEAQLARLGLDFEFFDAVDGRDLSEEELARYD----RAKALRRYGRPLTPGEIGCFLSHRKAWQK 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462567765 144 VVDRGLQKSLVFEDDlrfeIFFKRRLMNLMRDVEREGLDWDLIYVGRKRMQVEHPEKAVPRV--RNLVEADYSYW-TLAY 220
Cdd:COG3306    79 IVESGLPYALILEDD----VILSPDFAEVLEALAWLPADWDIVKLETSKRKVFLGRRKIKKLggYRLVRPYSPPLgTAGY 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462567765 221 VISLQGARKLLA-AEPLSkmLPVDEFLPvmfdkhpvseykaHFSLRNLHAFSVEPLLIYPthytGDDGYVSDTEtsvvwn 299
Cdd:COG3306   155 LISRKAAKKLLAlLEPID--RPVDDFLF-------------RFWLHGLRVYQVRPALVIQ----DSGLLGSTIE------ 209
                         250       260
                  ....*....|....*....|....*..
gi 2462567765 300 nehvktDWDRAKSQKMREQQALSREAK 326
Cdd:COG3306   210 ------AERRRKKRKRRLWDKLRRELR 230
Glyco_transf_25 pfam01755
Glycosyltransferase family 25 (LPS biosynthesis protein); Members of this family belong to ...
61-246 1.18e-35

Glycosyltransferase family 25 (LPS biosynthesis protein); Members of this family belong to Glycosyltransferase family 25 This is a family of glycosyltransferases involved in lipopolysaccharide (LPS) biosynthesis. These enzymes catalyze the transfer of various sugars onto the growing LPS chain during its biosynthesis.


Pssm-ID: 366794  Cd Length: 200  Bit Score: 128.33  E-value: 1.18e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462567765  61 FDEVFMINLRRRQDRRERMLRALQAQEIECRLVEAVDGKAMNTSQVEALgiqMLPGYRDPYHGRPLTKGELGCFLSHYNI 140
Cdd:pfam01755   1 MIKIYVISLKRATERREHIQKEFGKLNIPFQFFDAIDGKELPNHLLFKL---YNFLLRSKYAGRPLTLGEIGCFLSHYSL 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462567765 141 WKEVVDRGLQKSLVFEDDLRFEIFFKRRLMNLMRDVEregLDWDLIYVGRKRMQVEHPEKAVPRVRNLVEADYSY----- 215
Cdd:pfam01755  78 WQKCVELNLEYIIILEDDVILSENFKAILQFLLKEIN---ELEFLRLGEWLKTRFDPNDKFIVRLETFLMDSKKFkrtpi 154
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 2462567765 216 ----------------WTLAYVISLQGARKLL-AAEPLSkmLPVDEFL 246
Cdd:pfam01755 155 adygnrafyllksghaGTAGYLITPKAAKKLLkYSKNWP--LPVDDLM 200
Glyco_transf_25 cd06532
Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of ...
63-246 1.30e-32

Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.


Pssm-ID: 133474  Cd Length: 128  Bit Score: 118.09  E-value: 1.30e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462567765  63 EVFMINLRRRQDRRERMLRALQAQEIECRLVEAVDGKAMNTSQVEALGIQmlpgYRDPYHGRPLTKGELGCFLSHYNIWK 142
Cdd:cd06532     1 KIFVINLDRSTDRRERMEAQLAALGLDFEFFDAVDGKDLSEEELAALYDA----LFLPRYGRPLTPGEIGCFLSHYKLWQ 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462567765 143 EVVDRGLQKSLVFEDDLRFEiffkrrlmnlmrdveregldwdliyvgrkrmqvehpekavprvrnlveadySYWTLAYVI 222
Cdd:cd06532    77 KIVESNLEYALILEDDAILD---------------------------------------------------PDGTAGYLV 105
                         170       180
                  ....*....|....*....|....
gi 2462567765 223 SLQGARKLLAAEPlSKMLPVDEFL 246
Cdd:cd06532   106 SRKGAKKLLAALE-PIDLPVDVFL 128
 
Name Accession Description Interval E-value
COG3306 COG3306
Glycosyltransferase involved in LPS biosynthesis, GR25 family [Cell wall/membrane/envelope ...
64-326 2.67e-38

Glycosyltransferase involved in LPS biosynthesis, GR25 family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442535 [Multi-domain]  Cd Length: 238  Bit Score: 136.28  E-value: 2.67e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462567765  64 VFMINLRRRQDRRERMLRALQAQEIECRLVEAVDGKAMNTSQVEALGiqmlPGYRDPYHGRPLTKGELGCFLSHYNIWKE 143
Cdd:COG3306     3 IFVINLDRSTERREHIEAQLARLGLDFEFFDAVDGRDLSEEELARYD----RAKALRRYGRPLTPGEIGCFLSHRKAWQK 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462567765 144 VVDRGLQKSLVFEDDlrfeIFFKRRLMNLMRDVEREGLDWDLIYVGRKRMQVEHPEKAVPRV--RNLVEADYSYW-TLAY 220
Cdd:COG3306    79 IVESGLPYALILEDD----VILSPDFAEVLEALAWLPADWDIVKLETSKRKVFLGRRKIKKLggYRLVRPYSPPLgTAGY 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462567765 221 VISLQGARKLLA-AEPLSkmLPVDEFLPvmfdkhpvseykaHFSLRNLHAFSVEPLLIYPthytGDDGYVSDTEtsvvwn 299
Cdd:COG3306   155 LISRKAAKKLLAlLEPID--RPVDDFLF-------------RFWLHGLRVYQVRPALVIQ----DSGLLGSTIE------ 209
                         250       260
                  ....*....|....*....|....*..
gi 2462567765 300 nehvktDWDRAKSQKMREQQALSREAK 326
Cdd:COG3306   210 ------AERRRKKRKRRLWDKLRRELR 230
Glyco_transf_25 pfam01755
Glycosyltransferase family 25 (LPS biosynthesis protein); Members of this family belong to ...
61-246 1.18e-35

Glycosyltransferase family 25 (LPS biosynthesis protein); Members of this family belong to Glycosyltransferase family 25 This is a family of glycosyltransferases involved in lipopolysaccharide (LPS) biosynthesis. These enzymes catalyze the transfer of various sugars onto the growing LPS chain during its biosynthesis.


Pssm-ID: 366794  Cd Length: 200  Bit Score: 128.33  E-value: 1.18e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462567765  61 FDEVFMINLRRRQDRRERMLRALQAQEIECRLVEAVDGKAMNTSQVEALgiqMLPGYRDPYHGRPLTKGELGCFLSHYNI 140
Cdd:pfam01755   1 MIKIYVISLKRATERREHIQKEFGKLNIPFQFFDAIDGKELPNHLLFKL---YNFLLRSKYAGRPLTLGEIGCFLSHYSL 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462567765 141 WKEVVDRGLQKSLVFEDDLRFEIFFKRRLMNLMRDVEregLDWDLIYVGRKRMQVEHPEKAVPRVRNLVEADYSY----- 215
Cdd:pfam01755  78 WQKCVELNLEYIIILEDDVILSENFKAILQFLLKEIN---ELEFLRLGEWLKTRFDPNDKFIVRLETFLMDSKKFkrtpi 154
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 2462567765 216 ----------------WTLAYVISLQGARKLL-AAEPLSkmLPVDEFL 246
Cdd:pfam01755 155 adygnrafyllksghaGTAGYLITPKAAKKLLkYSKNWP--LPVDDLM 200
Glyco_transf_25 cd06532
Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of ...
63-246 1.30e-32

Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.


Pssm-ID: 133474  Cd Length: 128  Bit Score: 118.09  E-value: 1.30e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462567765  63 EVFMINLRRRQDRRERMLRALQAQEIECRLVEAVDGKAMNTSQVEALGIQmlpgYRDPYHGRPLTKGELGCFLSHYNIWK 142
Cdd:cd06532     1 KIFVINLDRSTDRRERMEAQLAALGLDFEFFDAVDGKDLSEEELAALYDA----LFLPRYGRPLTPGEIGCFLSHYKLWQ 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462567765 143 EVVDRGLQKSLVFEDDLRFEiffkrrlmnlmrdveregldwdliyvgrkrmqvehpekavprvrnlveadySYWTLAYVI 222
Cdd:cd06532    77 KIVESNLEYALILEDDAILD---------------------------------------------------PDGTAGYLV 105
                         170       180
                  ....*....|....*....|....
gi 2462567765 223 SLQGARKLLAAEPlSKMLPVDEFL 246
Cdd:cd06532   106 SRKGAKKLLAALE-PIDLPVDVFL 128
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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