|
Name |
Accession |
Description |
Interval |
E-value |
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
95-831 |
1.04e-30 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 130.97 E-value: 1.04e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 95 LERAFSLNPQQSEFATELGYQMILQGRVKEALKWYKTAMTLDETSVSALVGFI-QCQLIEGQLQDADQQLEFLNEIQQsi 173
Cdd:TIGR02917 79 LRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRgLAYLGLGQLELAQKSYEQALAIDP-- 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 174 gKSAELIYLHAVLAMKKNkRQEEVINLLNDVLDTHFSQLEGLPLGIQY-FEKLNPDFLLEIVMEYLSFCPMQPAspgqpl 252
Cdd:TIGR02917 157 -RSLYAKLGLAQLALAEN-RFDEARALIDEVLTADPGNVDALLLKGDLlLSLGNIELALAAYRKAIALRPNNIA------ 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 253 cPLLRRCISVL------------ETVVRTVPGLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLS 320
Cdd:TIGR02917 229 -VLLALATILIeagefeeaekhaDALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQ 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 321 QEKVKLCSQSLELCLSYDfkvRDYPLYHLIKAQSQKKMGEIADAIKTLHMAmslpgmkrigastkskDRKTEVDTSHRLS 400
Cdd:TIGR02917 308 LGNLEQAYQYLNQILKYA---PNSHQARRLLASIQLRLGRVDEAIATLSPA----------------LGLDPDDPAALSL 368
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 401 IFLELIDvhrlNGEQHEATKVLQDAihefsgTSEEVRVTIANADLA---LAQGDIERALSILQNVTAEQPYFIEAREKMA 477
Cdd:TIGR02917 369 LGEAYLA----LGDFEKAAEYLAKA------TELDPENAAARTQLGiskLSQGDPSEAIADLETAAQLDPELGRADLLLI 438
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 478 DIYLK-HRKDKMLYITcfREIAERM-ANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYS 555
Cdd:TIGR02917 439 LSYLRsGQFDKALAAA--KKLEKKQpDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPD 516
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 556 MAITYYEAALKTGQKNY-LCYDLAELLLK-------LKWYDKA--------EKVLQHALAHEPVNELS---ALMED---- 612
Cdd:TIGR02917 517 DAIQRFEKVLTIDPKNLrAILALAGLYLRtgneeeaVAWLEKAaelnpqeiEPALALAQYYLGKGQLKkalAILNEaada 596
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 613 -----------GRCQ---------------------------VLLAKVYSKMEKLGDAITALQQARELQA--RVLKRVQM 652
Cdd:TIGR02917 597 apdspeawlmlGRAQlaagdlnkavssfkkllalqpdsalalLLLADAYAVMKNYAKAITSLKRALELKPdnTEAQIGLA 676
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 653 ------EQPDA-------VPAQKHLAAEICAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLeLARLYLAQDDPDSC 719
Cdd:TIGR02917 677 qlllaaKRTESakkiaksLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIK-LHRALLASGNTAEA 755
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 720 LRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLrrcGKLEDvPRFFSMAEKRNS 799
Cdd:TIGR02917 756 VKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLY---LELKD-PRALEYAERALK 831
|
810 820 830
....*....|....*....|....*....|..
gi 2217331105 800 RAKLEPGFQYCKGLYLWYTGEPNDALRHFNKA 831
Cdd:TIGR02917 832 LAPNIPAILDTLGWLLVEKGEADRALPLLRKA 863
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
506-798 |
6.36e-26 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 108.66 E-value: 6.36e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 506 SFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALK-TGQKNYLCYDLAELLLKL 584
Cdd:COG2956 10 GWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLErDPDRAEALLELAQDYLKA 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 585 KWYDKAEKVLQHALAHEPvnelsalmEDGRCQVLLAKVYSKMEKLGDAITALQQARELQARvlkrvqmeqpdavpaqkhl 664
Cdd:COG2956 90 GLLDRAEELLEKLLELDP--------DDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPE------------------- 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 665 AAEICAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLM 744
Cdd:COG2956 143 NAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELY 222
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 2217331105 745 FRKQDYEQAVFHLQQLLERKPDNYMTLsRLIDLLRRCGKLEDVPRFFSMAEKRN 798
Cdd:COG2956 223 EKLGDPEEALELLRKALELDPSDDLLL-ALADLLERKEGLEAALALLERQLRRH 275
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
281-1085 |
9.15e-19 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 92.45 E-value: 9.15e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 281 AKVKYLS-GDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLElclsydfkvrdyplyhliKAQSQKkmg 359
Cdd:TIGR02917 28 AAKSYLQkNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELR------------------KALSLG--- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 360 eiadaiktLHMAMSLPGMKRIGASTKSKDR------KTEVDTSHRLSIFLELI-DVHRLNGEQHEATKVLQDAIhEFSGT 432
Cdd:TIGR02917 87 --------YPKNQVLPLLARAYLLQGKFQQvldelpGKTLLDDEGAAELLALRgLAYLGLGQLELAQKSYEQAL-AIDPR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 433 SEEVRvtIANADLALAQGDIERALSILQNVTAEQPYFIEAREKMADiYLKHRKDKMLYITCFREIAE-RMANPRSFLLLG 511
Cdd:TIGR02917 158 SLYAK--LGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGD-LLLSLGNIELALAAYRKAIAlRPNNIAVLLALA 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 512 DAYMNILEPEEAIVAYEQALNQNPKdgTLASKMGKALI--KTHNYSMAITYYEAALKTGQKNYLCYDLAEL-LLKLKWYD 588
Cdd:TIGR02917 235 TILIEAGEFEEAEKHADALLKKAPN--SPLAHYLKALVdfQKKNYEDARETLQDALKSAPEYLPALLLAGAsEYQLGNLE 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 589 KAEKVLQHALAHEPVNELSALMedgrcqvlLAKVYSKMEKLGDAITALQQARELQAR------VLKRVQMEQPDAVPAQK 662
Cdd:TIGR02917 313 QAYQYLNQILKYAPNSHQARRL--------LASIQLRLGRVDEAIATLSPALGLDPDdpaalsLLGEAYLALGDFEKAAE 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 663 HL--AAEICAEIAKHS-------VAQRDYEKAIKFYREALvhcETDNKIM---LELARLYLAQDDPDSCLRQCALLLQSD 730
Cdd:TIGR02917 385 YLakATELDPENAAARtqlgiskLSQGDPSEAIADLETAA---QLDPELGradLLLILSYLRSGQFDKALAAAKKLEKKQ 461
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 731 QDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPRFFSMAEKRNsrAKLEPGFQYC 810
Cdd:TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID--PKNLRAILAL 539
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 811 KGLYLwYTGEPNDALRHFNKARKdrdwgqnalynmieicLNPDNEtvggevfeNLDGDLGNSTEKQESVQLAVRTAEKLL 890
Cdd:TIGR02917 540 AGLYL-RTGNEEEAVAWLEKAAE----------------LNPQEI--------EPALALAQYYLGKGQLKKALAILNEAA 594
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 891 KeLKPQTVQGHVQLrimenycLMATKQKSNVEQALNTFTEIAASEKEHIPALLGMATAYMILKQTPRARNQLKRiaKMNW 970
Cdd:TIGR02917 595 D-AAPDSPEAWLML-------GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKR--ALEL 664
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 971 NaidaEEFEKSWLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIMEKEQAYTDAALNYEMAWKYSNRTNPAV 1050
Cdd:TIGR02917 665 K----PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAI 740
|
810 820 830
....*....|....*....|....*....|....*
gi 2217331105 1051 gyKLAFNYLKAKRYVDSIDICHQVLEAHPTYPKIR 1085
Cdd:TIGR02917 741 --KLHRALLASGNTAEAVKTLEAWLKTHPNDAVLR 773
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
285-601 |
8.93e-18 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 84.78 E-value: 8.93e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 285 YLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELCLSYDfkvRDYPLYHLIKAQSQKKMGEIADA 364
Cdd:COG2956 19 LLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERD---PDRAEALLELAQDYLKAGLLDRA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 365 IKTLHMAMSLPgmkrigastkskdrktevdtSHRLSIFLELIDVHRLNGEQHEATKVLQDAIHEfsgTSEEVRVTIANAD 444
Cdd:COG2956 96 EELLEKLLELD--------------------PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL---GPENAHAYCELAE 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 445 LALAQGDIERALSILQNVTAEQPYFIEAREKMADIYLKHRKdkmlyitcfreiaermanprsflllgdaymnilePEEAI 524
Cdd:COG2956 153 LYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGD----------------------------------YEEAI 198
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2217331105 525 VAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNYLCYDLAELLLKLKWYDKAEKVLQHALAHE 601
Cdd:COG2956 199 AALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
19-602 |
9.74e-18 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 88.99 E-value: 9.74e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 19 RLLLQDSQNVEALRMQALYYVcREGDIEKASTKLenlgNTLDAMEPQNAQLFyniTLAFSRTCGRSQLilQKIQTLLERA 98
Cdd:TIGR02917 320 QILKYAPNSHQARRLLASIQL-RLGRVDEAIATL----SPALGLDPDDPAAL---SLLGEAYLALGDF--EKAAEYLAKA 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 99 FSLNPQQSEFATELGYQMILQGRVKEALKWYKTAMTLDETSVSALVGFIQCQLiegQLQDADQQLEFLNEIQQSIGKSAE 178
Cdd:TIGR02917 390 TELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYL---RSGQFDKALAAAKKLEKKQPDNAS 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 179 LIYLHAVLAMKKNKRQEEVinllndvldthfsqleglplgiQYFEK---LNPDFLLEIVmeYLSFCPMQPASPGQplcpl 255
Cdd:TIGR02917 467 LHNLLGAIYLGKGDLAKAR----------------------EAFEKalsIEPDFFPAAA--NLARIDIQEGNPDD----- 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 256 lrrCISVLETVVRTVPGLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKlcsQSLELCL 335
Cdd:TIGR02917 518 ---AIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLK---KALAILN 591
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 336 SYDFKVRDYPLYHLIKAQSQKKMGEIADAIKTLhmamslpgmkrigastkskdRKTEVDTSHRLSIFLELIDVHRLNGEQ 415
Cdd:TIGR02917 592 EAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSF--------------------KKLLALQPDSALALLLLADAYAVMKNY 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 416 HEATKVLQDAIHEFSGTseeVRVTIANADLALAQGDIERALSILQNVTAEQPYFIEAREKMADIYLKhRKDKMLYITCFR 495
Cdd:TIGR02917 652 AKAITSLKRALELKPDN---TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLR-QKDYPAAIQAYR 727
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 496 EIAERMANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNYLCY 575
Cdd:TIGR02917 728 KALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVL 807
|
570 580
....*....|....*....|....*...
gi 2217331105 576 -DLAELLLKLKwYDKAEKVLQHALAHEP 602
Cdd:TIGR02917 808 nNLAWLYLELK-DPRALEYAERALKLAP 834
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
286-999 |
4.97e-17 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 86.68 E-value: 4.97e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 286 LSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELCLSYDFKVRDyplYHLIKAQSQKKMGEIADAI 365
Cdd:TIGR02917 137 GLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVD---ALLLKGDLLLSLGNIELAL 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 366 KTLHMAMSL-PG--MKRIGAST----KSKDRKTEVDTSHRLSIFLELIDVHRLNGEQHEATKVLQDAIHEF-----SGTS 433
Cdd:TIGR02917 214 AAYRKAIALrPNniAVLLALATilieAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLqdalkSAPE 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 434 EEVRVTIANAdLALAQGDIERALSILQNVTAEQPYFIEAREKMADIYLKHRKDKMLYITCFREIAERMANPRSFLLLGDA 513
Cdd:TIGR02917 294 YLPALLLAGA-SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEA 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 514 YMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKtgqknyLCYDL--AELLL-----KLKW 586
Cdd:TIGR02917 373 YLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQ------LDPELgrADLLLilsylRSGQ 446
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 587 YDKAEKVLQHALAHEPVNELSalmedgrcQVLLAKVYSKMEKLGDAITALQQARELqarvlkrvqmeQPDAVPAQkhlaa 666
Cdd:TIGR02917 447 FDKALAAAKKLEKKQPDNASL--------HNLLGAIYLGKGDLAKAREAFEKALSI-----------EPDFFPAA----- 502
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 667 eicAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFR 746
Cdd:TIGR02917 503 ---ANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLG 579
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 747 KQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPRFFSMAEKRNSraklepgfqyckglylwYTGEPNDALR 826
Cdd:TIGR02917 580 KGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-----------------DSALALLLLA 642
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 827 HFNKARKDRDWGQNALYNMIEIclNPDNetvggEVFENLDGDLGNSTEKQESvqlavrtAEKLLKELKPQTVQGHVQLRI 906
Cdd:TIGR02917 643 DAYAVMKNYAKAITSLKRALEL--KPDN-----TEAQIGLAQLLLAAKRTES-------AKKIAKSLQKQHPKAALGFEL 708
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 907 mENYCLMATKQKSNVEQALNTFTEIAASEKehipALLGMATAYMILKQTPRARNQLKRIAKMNWNAIDAEefekswLLLA 986
Cdd:TIGR02917 709 -EGDLYLRQKDYPAAIQAYRKALKRAPSSQ----NAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLR------TALA 777
|
730
....*....|...
gi 2217331105 987 DIYIQSAKYDMAE 999
Cdd:TIGR02917 778 ELYLAQKDYDKAI 790
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
704-1036 |
2.38e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 80.54 E-value: 2.38e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 704 LELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRcgk 783
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLK--- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 784 ledvprffsmaekrnsraklepgfqyckglylwyTGEPNDALRHFNKARKDRDWGQNALYNMIEIClnpdnetvggevfe 863
Cdd:COG2956 89 ----------------------------------AGLLDRAEELLEKLLELDPDDAEALRLLAEIY-------------- 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 864 nldgdlgnstEKQESVQLAVRTAEKLLKeLKPQTVQGHVQLRimenyclMATKQKSNVEQALNTFTEIAASEKEHIPALL 943
Cdd:COG2956 121 ----------EQEGDWEKAIEVLERLLK-LGPENAHAYCELA-------ELYLEQGDYDEAIEALEKALKLDPDCARALL 182
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 944 GMATAYMILKQTPRARNQLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIM 1023
Cdd:COG2956 183 LLAELYLEQGDYEEAIAALERALEQDPDYLPA------LPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLE 256
|
330
....*....|...
gi 2217331105 1024 EKEQAytDAALNY 1036
Cdd:COG2956 257 RKEGL--EAALAL 267
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
63-737 |
4.65e-16 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 83.59 E-value: 4.65e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 63 EPQNAQLFYNITLAFSRTCGRSQLILQKIQ----------TLLERAFSLNPQQSEFATELGYQMILQGRVKEALKWYKTA 132
Cdd:TIGR02917 140 QLELAQKSYEQALAIDPRSLYAKLGLAQLAlaenrfdearALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKA 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 133 MTLDETSVSALVGFIQCQLIEGQLQDADQQLEflnEIQQSIGKSAELIYLHAVLAMKKnKRQEEVINLLNDVLDTHFSQL 212
Cdd:TIGR02917 220 IALRPNNIAVLLALATILIEAGEFEEAEKHAD---ALLKKAPNSPLAHYLKALVDFQK-KNYEDARETLQDALKSAPEYL 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 213 EGLPL-GIQYFEKLNPDFLLEIVMEYLSFCPMQPASPGQPLCPLLR--------RCISVLETVVRTVPGLL--------- 274
Cdd:TIGR02917 296 PALLLaGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRlgrvdeaiATLSPALGLDPDDPAALsllgeayla 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 275 -----QTVFLIAKVKYLS-----------------GDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLE 332
Cdd:TIGR02917 376 lgdfeKAAEYLAKATELDpenaaartqlgisklsqGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAK 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 333 lclSYDFKVRDYPLYHLIKAQSQKKMGEIADAIKTLHMAMSL-PG-------MKRIGASTK----SKDRKTEVDTS--HR 398
Cdd:TIGR02917 456 ---KLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIePDffpaaanLARIDIQEGnpddAIQRFEKVLTIdpKN 532
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 399 LSIFLELIDVHRLNGEQHEATKVLQDAIHEFSGT-------------------SEEVRVTIAN------------ADLAL 447
Cdd:TIGR02917 533 LRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEiepalalaqyylgkgqlkkALAILNEAADaapdspeawlmlGRAQL 612
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 448 AQGDIERALSILQNVTAEQPYFIEAREKMADIYLKHRKDKMLYITCFREIAERMANPRSFLLLGDAYMNILEPEEAIVAY 527
Cdd:TIGR02917 613 AAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIA 692
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 528 EQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNYLCYDLAELLLKLKWYDKAEKVLQHALAHEPvnels 607
Cdd:TIGR02917 693 KSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP----- 767
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 608 almEDGRCQVLLAKVYSKMEKLGDAITALQQARELqarvlkrvqmeQPDAVPAQKHLAaeicaeiakHSVAQRDYEKAIK 687
Cdd:TIGR02917 768 ---NDAVLRTALAELYLAQKDYDKAIKHYQTVVKK-----------APDNAVVLNNLA---------WLYLELKDPRALE 824
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|
gi 2217331105 688 FYREALVHCETDNKIMLELARLYLAQDDPDSCLRqcALLLQSDQDNEAAT 737
Cdd:TIGR02917 825 YAERALKLAPNIPAILDTLGWLLVEKGEADRALP--LLRKAVNIAPEAAA 872
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
508-645 |
3.18e-14 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 70.61 E-value: 3.18e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 508 LLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKN-YLCYDLAELLLKLKW 586
Cdd:COG4783 8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEpEARLNLGLALLKAGD 87
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 2217331105 587 YDKAEKVLQHALAHEPvnelsalmEDGRCQVLLAKVYSKMEKLGDAITALQQARELQAR 645
Cdd:COG4783 88 YDEALALLEKALKLDP--------EHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
586-815 |
7.79e-14 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 75.80 E-value: 7.79e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 586 WYDKAEKVLQHALAHEPVNELSALMEdgrcqvLLAKVYSKMEKLGDAITALQQARELQARVLKRVQMEQPDAVPAQKHLA 665
Cdd:COG3914 4 AALLALAALAAAALLAAAAAAELALA------AELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 666 AEICAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMF 745
Cdd:COG3914 78 AALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALR 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 746 RKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPRFFSMAekrnsrAKLEPGFQYCKGLYL 815
Cdd:COG3914 158 RLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRA------LELDPDNADAHSNLL 221
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
491-714 |
1.71e-13 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 71.58 E-value: 1.71e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 491 ITCFRE-IAERMANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQ 569
Cdd:COG0457 28 IEDYEKaLELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDP 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 570 KNYLCYD-LAELLLKLKWYDKAEKVLQHALAHEPvnelsalmEDGRCQVLLAKVYSKMEKLGDAITALQQARELQARVLK 648
Cdd:COG0457 108 DDAEALYnLGLALLELGRYDEAIEAYERALELDP--------DDADALYNLGIALEKLGRYEEALELLEKLEAAALAALL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217331105 649 RVQMEQPDAVPAQKHLAAEICAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQD 714
Cdd:COG0457 180 AAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
503-764 |
3.59e-13 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 70.42 E-value: 3.59e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 503 NPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNYLCY-DLAELL 581
Cdd:COG0457 7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALnNLGLAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 582 LKLKWYDKAEKVLQHALAHEPvnelsalmEDGRCQVLLAKVYSKMEKLGDAITALQQARELQarvlkrvqmeqPDAVPAQ 661
Cdd:COG0457 87 QALGRYEEALEDYDKALELDP--------DDAEALYNLGLALLELGRYDEAIEAYERALELD-----------PDDADAL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 662 KHLAAEICAeiakhsvaQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMA 741
Cdd:COG0457 148 YNLGIALEK--------LGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAAL 219
|
250 260
....*....|....*....|...
gi 2217331105 742 DLMFRKQDYEQAVFHLQQLLERK 764
Cdd:COG0457 220 AELLLLALALLLALRLAALALYQ 242
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
513-839 |
4.45e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 73.49 E-value: 4.45e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 513 AYMNILEPEEAIVAYEQALNQNPKDGTLAskmgKALIKTHNYSMAITYYEAALKTGQKNYLCYDLAELLLKLKWYDKAEK 592
Cdd:COG3914 24 AELALAAELEAAALAAALGLALLLLAALA----EAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALA 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 593 VLQHALAHEPvNELSALmedgrcqVLLAKVYSKMEKLGDAITALQQARELQarvlkrvqmeqPDAVPAQKHLAaeicaEI 672
Cdd:COG3914 100 LYRRALALNP-DNAEAL-------FNLGNLLLALGRLEEALAALRRALALN-----------PDFAEAYLNLG-----EA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 673 AKHsvaQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQddpdsclrqcalllqsdqdneaatmmmadlmfrkQDYEQ 752
Cdd:COG3914 156 LRR---LGRLEEAIAALRRALELDPDNAEALNNLGNALQDL----------------------------------GRLEE 198
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 753 AVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPRFfsmaekRNSRAKLEPGFQYCKGLYLWYTGEpNDALRHFNKAR 832
Cdd:COG3914 199 AIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRF------EELLAALARGPSELSPFALLYLPD-DDPAELLALAR 271
|
....*..
gi 2217331105 833 KdrdWGQ 839
Cdd:COG3914 272 A---WAQ 275
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
440-1082 |
6.18e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 73.19 E-value: 6.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 440 IANADLALAQGDIERALSILQNVTAEQPYFIEAREKMADIYLKH-------------------RKDKMLYIT-------C 493
Cdd:TIGR02917 26 IEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALgdyaaaekelrkalslgypKNQVLPLLArayllqgK 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 494 FREIAERMANPRS---------FLLLGDAYMNILEPEEAIVAYEQALNQNPKdgTLASKMGKALIKT--HNYSMAITYYE 562
Cdd:TIGR02917 106 FQQVLDELPGKTLlddegaaelLALRGLAYLGLGQLELAQKSYEQALAIDPR--SLYAKLGLAQLALaeNRFDEARALID 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 563 AALKTGQKNYLCYDL-AELLLKLKWYDKAEKVLQHALAHEPVNELSALMEDGrcqVLL-AKVYSKMEKlgDAITALQQAR 640
Cdd:TIGR02917 184 EVLTADPGNVDALLLkGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALAT---ILIeAGEFEEAEK--HADALLKKAP 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 641 -ELQARVLK-RVQMEQPDAVPAQKHLAAEICAE----IAKH-----SVAQRDYEKAIKFYREALVHCETDNKIMLELARL 709
Cdd:TIGR02917 259 nSPLAHYLKaLVDFQKKNYEDARETLQDALKSApeylPALLlagasEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASI 338
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 710 YLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPR 789
Cdd:TIGR02917 339 QLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIA 418
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 790 FFSMAEKRNS---RAKLEPGFQYC------KGLYL---WYTGEPNDALRHFNKA-----RKDRDWGQNALYNMIEIclNP 852
Cdd:TIGR02917 419 DLETAAQLDPelgRADLLLILSYLrsgqfdKALAAakkLEKKQPDNASLHNLLGaiylgKGDLAKAREAFEKALSI--EP 496
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 853 DNETVGGEvfenldgdLGNSTEKQESVQLAVRTAEKLLKELkPQTVQGHVQLRIMENyclmatkQKSNVEQALNTFTEIA 932
Cdd:TIGR02917 497 DFFPAAAN--------LARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYL-------RTGNEEEAVAWLEKAA 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 933 ASEKEHIPALLGMATAYMILKQTPRARNQLKRIAKmnwNAIDAEEFeksWLLLADIYIQSAKYDMAEDLLKRCLRHNRSC 1012
Cdd:TIGR02917 561 ELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD---AAPDSPEA---WLMLGRAQLAAGDLNKAVSSFKKLLALQPDS 634
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217331105 1013 CKAYEYMGYIMEKEQAYTDAALNYE--MAWKYSNRTNPAVgykLAFNYLKAKRYVDSIDICHQVLEAHPTYP 1082
Cdd:TIGR02917 635 ALALLLLADAYAVMKNYAKAITSLKraLELKPDNTEAQIG---LAQLLLAAKRTESAKKIAKSLQKQHPKAA 703
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
504-1080 |
1.45e-12 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 72.04 E-value: 1.45e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 504 PRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGtlaskmgkalikthnysmaityyEAalktgqkNYLcydLAELLLK 583
Cdd:TIGR02917 22 PEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDA-----------------------EA-------RFL---LGKIYLA 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 584 LKWYDKAEKVLQHALahepvnelSALMEDGRCQVLLAKVYSKMEKLGDAITalqqarelqarvlkrvQMEQPDAVPAQkh 663
Cdd:TIGR02917 69 LGDYAAAEKELRKAL--------SLGYPKNQVLPLLARAYLLQGKFQQVLD----------------ELPGKTLLDDE-- 122
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 664 LAAEICAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADL 743
Cdd:TIGR02917 123 GAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDL 202
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 744 MFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPrffSMAEKRNSRAKLEPGFQYCKGLYLWYTGEPND 823
Cdd:TIGR02917 203 LLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAE---KHADALLKKAPNSPLAHYLKALVDFQKKNYED 279
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 824 ALRHFNKARKDRDWGQNALY--NMIEICLNpDNETVGGEVFENLDGDLGNSTEKQ--ESVQLAVRTAEKLLKELKP--QT 897
Cdd:TIGR02917 280 ARETLQDALKSAPEYLPALLlaGASEYQLG-NLEQAYQYLNQILKYAPNSHQARRllASIQLRLGRVDEAIATLSPalGL 358
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 898 VQGHVQLRIMENYCLMATKQksnVEQALNTFTEIAASEKEHIPALLGMATAYMILKQTPRARNQLKRIAKMNWNAIDAEe 977
Cdd:TIGR02917 359 DPDDPAALSLLGEAYLALGD---FEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRAD- 434
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 978 fekswLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIMEKEQAYTDAALNYEMAWKySNRTNPAVGYKLAFN 1057
Cdd:TIGR02917 435 -----LLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALS-IEPDFFPAAANLARI 508
|
570 580
....*....|....*....|...
gi 2217331105 1058 YLKAKRYVDSIDICHQVLEAHPT 1080
Cdd:TIGR02917 509 DIQEGNPDDAIQRFEKVLTIDPK 531
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
433-602 |
6.23e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 64.06 E-value: 6.23e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 433 SEEVRVTIANADLALAQGDIERALSILQNVTAEQPYfiearekmadiylkhrkdkmlyitcfreiaermaNPRSFLLLGD 512
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPD----------------------------------NPEAFALLGE 46
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 513 AYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNYLCYD-LAELLLKLKWYDKAE 591
Cdd:COG4783 47 ILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLrLARAYRALGRPDEAI 126
|
170
....*....|.
gi 2217331105 592 KVLQHALAHEP 602
Cdd:COG4783 127 AALEKALELDP 137
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
869-1079 |
7.92e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 67.06 E-value: 7.92e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 869 LGNSTEKQESVQLAVRTAEKLLkELKPQTVQGHVQLrimenyCLMATKQKsNVEQALNTFTEIAASEKEHIPALLGMATA 948
Cdd:COG2956 48 LGNLYRRRGEYDRAIRIHQKLL-ERDPDRAEALLEL------AQDYLKAG-LLDRAEELLEKLLELDPDDAEALRLLAEI 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 949 YMILKQTPRARNQLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIMEKEQA 1028
Cdd:COG2956 120 YEQEGDWEKAIEVLERLLKLGPENAHA------YCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGD 193
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2217331105 1029 YTDAALNYEMAWKySNRTNPAVGYKLAFNYLKAKRYVDSIDICHQVLEAHP 1079
Cdd:COG2956 194 YEEAIAALERALE-QDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP 243
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
441-602 |
1.66e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 68.48 E-value: 1.66e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 441 ANADLALAQGDIERALSILQNVTAEQPYFIEAREkmadiyLKHRKDKMLYITCFREIAERM-ANPRSFLLLGDAYMNILE 519
Cdd:COG3914 54 AAAAALLALAAGEAAAAAAALLLLAALLELAALL------LQALGRYEEALALYRRALALNpDNAEALFNLGNLLLALGR 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 520 PEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALK-TGQKNYLCYDLAELLLKLKWYDKAEKVLQHAL 598
Cdd:COG3914 128 LEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALElDPDNAEALNNLGNALQDLGRLEEAIAAYRRAL 207
|
....
gi 2217331105 599 AHEP 602
Cdd:COG3914 208 ELDP 211
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
503-611 |
1.99e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 62.33 E-value: 1.99e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 503 NPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNYLC-YDLAELL 581
Cdd:COG4235 16 DAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEAlYLLGLAA 95
|
90 100 110
....*....|....*....|....*....|
gi 2217331105 582 LKLKWYDKAEKVLQHALAHEPVNELSALME 611
Cdd:COG4235 96 FQQGDYAEAIAAWQKLLALLPADAPARLLE 125
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
408-829 |
1.56e-10 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 65.49 E-value: 1.56e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 408 VHRLNGEQHEATKVLQdAIHEFSGTSEEVRVTIANadLALAQGDIERALSILQNVtAEQPyfiEAREKMADIYLKHRKDK 487
Cdd:PRK11447 156 VAKLPAQRPEAINQLQ-RLNADYPGNTGLRNTLAL--LLFSSGRRDEGFAVLEQM-AKSP---AGRDAAAQLWYGQIKDM 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 488 ML----------YITCFREiAERMANPRSFL-----LLGD-AYMNILE---------PEEAIVAYEQALNQNPKDGTLAS 542
Cdd:PRK11447 229 PVsdasvaalqkYLQVFSD-GDSVAAARSQLaeqqkQLADpAFRARAQglaavdsgqGGKAIPELQQAVRANPKDSEALG 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 543 KMGKALIKTHNYSMAITYYEAALKTGQKNYlcydlaelllklkWYDKAEKVLQhalahepVNELSALMEDGRcQVLLAKV 622
Cdd:PRK11447 308 ALGQAYSQQGDRARAVAQFEKALALDPHSS-------------NRDKWESLLK-------VNRYWLLIQQGD-AALKANN 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 623 YSKMEKLgdaitaLQQARelqarvlkrvQMEQPDAvpaqkhLAAEICAEIAkhsVAQRDYEKAIKFYREALvHCETDNKI 702
Cdd:PRK11447 367 LAQAERL------YQQAR----------QVDNTDS------YAVLGLGDVA---MARKDYAAAERYYQQAL-RMDPGNTN 420
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 703 MLE-LARLYLAQDdPDSCLRQCALLLQSDQ----DNEAATMM-----MADLMFRKQDYEQAVFHLQQLLERKPDNYMTLS 772
Cdd:PRK11447 421 AVRgLANLYRQQS-PEKALAFIASLSASQRrsidDIERSLQNdrlaqQAEALENQGKWAQAAELQRQRLALDPGSVWLTY 499
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 2217331105 773 RLIDLLRRCGKLEDVPRFFSMAEKRNSRaklEPGFQYCKGLYLWYTGEPNDALRHFN 829
Cdd:PRK11447 500 RLAQDLRQAGQRSQADALMRRLAQQKPN---DPEQVYAYGLYLSGSDRDRAALAHLN 553
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
882-1098 |
1.80e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 62.82 E-value: 1.80e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 882 AVRTAEKLLkELKPQTVQGHVQL-RIMEnyclmatkQKSNVEQALNTFTEIAASEKEHIPALLGMATAYMILKQTPRARN 960
Cdd:COG2956 27 AIDLLEEAL-ELDPETVEAHLALgNLYR--------RRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 961 QLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIMEKEQAYTDAALNYEMAW 1040
Cdd:COG2956 98 LLEKLLELDPDDAEA------LRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2217331105 1041 KYsNRTNPAVGYKLAFNYLKAKRYVDSIDICHQVLEAHPTYPKIRKDILDKARASLRP 1098
Cdd:COG2956 172 KL-DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDP 228
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
665-798 |
3.82e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 59.05 E-value: 3.82e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 665 AAEICAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLM 744
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 2217331105 745 FRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPRFFSMAEKRN 798
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
666-767 |
1.31e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 57.32 E-value: 1.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 666 AEICAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMF 745
Cdd:COG4235 17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF 96
|
90 100
....*....|....*....|..
gi 2217331105 746 RKQDYEQAVFHLQQLLERKPDN 767
Cdd:COG4235 97 QQGDYAEAIAAWQKLLALLPAD 118
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
703-833 |
1.56e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 57.51 E-value: 1.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 703 MLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCG 782
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 2217331105 783 KLEDVPRFFSMAEKRNSRaklEPGFQYCKGLYLWYTGEPNDALRHFNKARK 833
Cdd:COG4783 87 DYDEALALLEKALKLDPE---HPEAYLRLARAYRALGRPDEAIAALEKALE 134
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
112-566 |
3.79e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 60.87 E-value: 3.79e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 112 LGYQMILQGRVKEALKWYKTAMTLDETSVSALVGFIQCQLIEGQLQDADQQLEflnEIQQSIGKSAELIYLHAVLAMKKN 191
Cdd:TIGR02917 471 LGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFE---KVLTIDPKNLRAILALAGLYLRTG 547
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 192 kRQEEVINLLNDVLDTHFSQLEGLPLGIQYFEKLNPdflleivmeylsfcpmqpaspgqplcplLRRCISVLETVVRTVP 271
Cdd:TIGR02917 548 -NEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQ----------------------------LKKALAILNEAADAAP 598
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 272 GLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELCLSYDfkvRDYPLYHLIK 351
Cdd:TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK---PDNTEAQIGL 675
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 352 AQSQKKMGEIADAIKTLHM--------AMSLPGMKRIGASTKS-KDRKTEVDTSHRLS----IFLELIDVHRLNGEQHEA 418
Cdd:TIGR02917 676 AQLLLAAKRTESAKKIAKSlqkqhpkaALGFELEGDLYLRQKDyPAAIQAYRKALKRApssqNAIKLHRALLASGNTAEA 755
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 419 TKVLQDAIHEfsgTSEEVRVTIANADLALAQGDIERALSILQNVTAEQPYFIEAREKMADIYLKHRKDKMLyitcfrEIA 498
Cdd:TIGR02917 756 VKTLEAWLKT---HPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDPRAL------EYA 826
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217331105 499 ERM-----ANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALK 566
Cdd:TIGR02917 827 ERAlklapNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
531-763 |
4.95e-09 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 58.09 E-value: 4.95e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 531 LNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNY-LCYDLAELLLKLKWYDKAEKVLQHALAHEPvnelsal 609
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAeALYNLGLAYLRLGRYEEALADYEQALELDP------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 610 mEDGRCQVLLAKVYSKMEKLGDAITALQQARELQarvlkrvqmeqPDAVPAQKHLAaEICAEiakhsvaQRDYEKAIKFY 689
Cdd:COG0457 74 -DDAEALNNLGLALQALGRYEEALEDYDKALELD-----------PDDAEALYNLG-LALLE-------LGRYDEAIEAY 133
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217331105 690 REALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLER 763
Cdd:COG0457 134 ERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQAL 207
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
611-804 |
6.24e-09 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 58.09 E-value: 6.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 611 EDGRCQVLLAKVYSKMEKLGDAITALQQARELQarvlkrvqmeqPDAVPAQKHLAaeicaeIAKHsvAQRDYEKAIKFYR 690
Cdd:COG0457 6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELD-----------PDDAEALYNLG------LAYL--RLGRYEEALADYE 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 691 EALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDNYMT 770
Cdd:COG0457 67 QALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADA 146
|
170 180 190
....*....|....*....|....*....|....
gi 2217331105 771 LSRLIDLLRRCGKLEDVPRFFSMAEKRNSRAKLE 804
Cdd:COG0457 147 LYNLGIALEKLGRYEEALELLEKLEAAALAALLA 180
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
16-238 |
8.37e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 57.82 E-value: 8.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 16 AWLRLLLQDSQNVEALRMQALYYVcREGDIEKAstklENLGNTLDAMEPQNAQLFYNITLAFSRTcGRsqliLQKIQTLL 95
Cdd:COG2956 64 IHQKLLERDPDRAEALLELAQDYL-KAGLLDRA----EELLEKLLELDPDDAEALRLLAEIYEQE-GD----WEKAIEVL 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 96 ERAFSLNPQQSEFATELGYQMILQGRVKEALKWYKTAMTLDETSVSALVGFIQCQLIEGQLQDAdqqLEFLNEIQQSIGK 175
Cdd:COG2956 134 ERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEA---IAALERALEQDPD 210
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217331105 176 SAELIYLHAVLAMKKNkRQEEVINLLNDVLDTHFSQLEGLPLGIQYFEKLNPDFLLEIVMEYL 238
Cdd:COG2956 211 YLPALPRLAELYEKLG-DPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQL 272
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
408-641 |
1.26e-08 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 56.94 E-value: 1.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 408 VHRLNGEQHEATKVLQDAIhEFSGTSEEVRVTIANAdlALAQGDIERALSILQNVTAEQPYFIEAREKMADIYLKHRKDK 487
Cdd:COG0457 17 AYRRLGRYEEAIEDYEKAL-ELDPDDAEALYNLGLA--YLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 488 MlYITCFRE-IAERMANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALK 566
Cdd:COG0457 94 E-ALEDYDKaLELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEA 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217331105 567 tgQKNYLCYDLAELLLKLKWYDKAEKVLQHALAHEPVNELSALMEDGRCQVLLAKVYSKMEKLGDAITALQQARE 641
Cdd:COG0457 173 --AALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
14-208 |
1.66e-08 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 57.05 E-value: 1.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 14 KSAWLRLLLQDSQNVEALRMQALYYVcREGDIEKAstklENLGNTLDAMEPQNAQLFYNITLAFSRTcGRsqliLQKIQT 93
Cdd:COG2956 96 EELLEKLLELDPDDAEALRLLAEIYE-QEGDWEKA----IEVLERLLKLGPENAHAYCELAELYLEQ-GD----YDEAIE 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 94 LLERAFSLNPQQSEFATELGYQMILQGRVKEALKWYKTAMTLDETSVSALVGFIQCQLIEGQLQDAdqqLEFLNEIQQSI 173
Cdd:COG2956 166 ALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEA---LELLRKALELD 242
|
170 180 190
....*....|....*....|....*....|....*
gi 2217331105 174 GKSAELIYLHAVLAmkKNKRQEEVINLLNDVLDTH 208
Cdd:COG2956 243 PSDDLLLALADLLE--RKEGLEAALALLERQLRRH 275
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
495-603 |
4.35e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 53.81 E-value: 4.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 495 REIAERMANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKN-YL 573
Cdd:COG5010 45 AGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNpNA 124
|
90 100 110
....*....|....*....|....*....|
gi 2217331105 574 CYDLAELLLKLKWYDKAEKVLQHALAHEPV 603
Cdd:COG5010 125 YSNLAALLLSLGQDDEAKAALQRALGTSPL 154
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
513-602 |
6.81e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 51.32 E-value: 6.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 513 AYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNYLCYDLAELLLKLKWYDKAEK 592
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|
gi 2217331105 593 VLQHALAHEP 602
Cdd:COG3063 81 YLERALELDP 90
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
619-767 |
6.97e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 52.50 E-value: 6.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 619 LAKVYSKMEKLGDAITALQQARELQarvlkrvqmeqPDAVPAQkhlaaeicAEIAKHSVAQRDYEKAIKFYREALVHCET 698
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELD-----------PDNPEAF--------ALLGEILLQLGDLDEAIVLLHEALELDPD 70
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217331105 699 DNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDN 767
Cdd:COG4783 71 EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
680-790 |
7.72e-08 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 55.97 E-value: 7.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 680 RDYEKAIKFYREALVHCETDNKIML-----ELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAV 754
Cdd:PRK11788 155 KDWQKAIDVAERLEKLGGDSLRVEIahfycELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAI 234
|
90 100 110
....*....|....*....|....*....|....*..
gi 2217331105 755 FHLQQLLERKPDnYMTLsrLIDLLRRC-GKLEDVPRF 790
Cdd:PRK11788 235 EALERVEEQDPE-YLSE--VLPKLMECyQALGDEAEG 268
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
922-1097 |
8.41e-08 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 54.63 E-value: 8.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 922 EQALNTFTEIAASEKEHIPALLGMATAYMILKQTPRARNQLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYDMAEDL 1001
Cdd:COG0457 25 EEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA------LNNLGLALQALGRYEEALED 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 1002 LKRCLRHNRSCCKAYEYMGYIMEKEQAYTDAALNYEMAWKYsNRTNPAVGYKLAFNYLKAKRYVDSIDICHQVLEAHPTY 1081
Cdd:COG0457 99 YDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALEL-DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAA 177
|
170
....*....|....*.
gi 2217331105 1082 PKIRKDILDKARASLR 1097
Cdd:COG0457 178 LLAAALGEAALALAAA 193
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
389-535 |
1.76e-07 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 54.81 E-value: 1.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 389 RKTEVDTSHRLSIFL-ELIDVHRLNGEQHEATKVLQDAIHEFSGTseeVRVTIANADLALAQGDIERALSILQNVTAEQP 467
Cdd:PRK11788 169 KLGGDSLRVEIAHFYcELAQQALARGDLDAARALLKKALAADPQC---VRASILLGDLALAQGDYAAAIEALERVEEQDP 245
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 468 -YFIEAREKMADIYLK-HRKDKmlYITCFREIAERMANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNP 535
Cdd:PRK11788 246 eYLSEVLPKLMECYQAlGDEAE--GLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHP 313
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
454-584 |
2.61e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 50.77 E-value: 2.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 454 RALSILQNVTAEQPYFIEAREKMADIYLK-HRKDKMlyITCFREIAERM-ANPRSFLLLGDAYMNILEPEEAIVAYEQAL 531
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRlGRYDEA--LAAYEKALRLDpDNADALLDLAEALLAAGDTEEAEELLERAL 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 2217331105 532 NQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNYLCYDLAELLLKL 584
Cdd:COG4235 79 ALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
937-1081 |
2.95e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 50.96 E-value: 2.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 937 EHIPALLGMATAYMILKQTPRARNQLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAY 1016
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEA------FALLGEILLQLGDLDEAIVLLHEALELDPDEPEAR 75
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217331105 1017 EYMGYIMEKEQAYTDAALNYEMAWKYsNRTNPAVGYKLAFNYLKAKRYVDSIDICHQVLEAHPTY 1081
Cdd:COG4783 76 LNLGLALLKAGDYDEALALLEKALKL-DPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
553-774 |
4.45e-07 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 52.99 E-value: 4.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 553 NYSMAITYYEAALKTGQKNYLCYDL--AELLLKLKWYDKAEKVLQHALAHEPVN------ELSALMEDGRCQVLLaKVYS 624
Cdd:COG3071 65 DYERRDEYLAQALELAPEAELAVLLtrAELLLDQGQAEQALATLEALRAGAPRHpqvlrlLLQAYRQLGDWEELL-ELLP 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 625 KMEKLGdAITAlQQARELQARV---LKRVQMEQPDA-------VPAQKHLAAEICAEIAKHSVAQRDYEKAIKFYREALV 694
Cdd:COG3071 144 ALRKHK-ALSA-EEAQALERRAylgLLRQAARDAEAlkalwkaLPRAERRDPELAAAYARALIALGDHDEAERLLREALK 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 695 HCETDnkimlELARLY--LAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDN--YMT 770
Cdd:COG3071 222 RQWDP-----RLVRLYgrLQGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPSAeaYAE 296
|
....
gi 2217331105 771 LSRL 774
Cdd:COG3071 297 LARL 300
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
424-727 |
1.26e-06 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 51.83 E-value: 1.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 424 DAIHEFSGTSEEVrVTIANADLALAQGDIERALSILQNVTAEQPYFIEAREKMADIYLKHRKDKMLYitcfrEIAERMAN 503
Cdd:COG3071 74 AQALELAPEAELA-VLLTRAELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELL-----ELLPALRK 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 504 PRsflLLGDAYMNILEPEeaivAYEQALNQNPKDGTLASKMGKALikthnysmaityyEAALKtgQKNYLCYDLAELLLK 583
Cdd:COG3071 148 HK---ALSAEEAQALERR----AYLGLLRQAARDAEALKALWKAL-------------PRAER--RDPELAAAYARALIA 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 584 LKWYDKAEKVLQHALAHEPVNELSALMedGRCQvllakvyskmekLGDAITALQQARELQArvlkrvqmEQPDAvPAQKH 663
Cdd:COG3071 206 LGDHDEAERLLREALKRQWDPRLVRLY--GRLQ------------GGDPAKQLKRAEKWLK--------KHPND-PDLLL 262
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2217331105 664 LAAEICaeiakhsVAQRDYEKAIKFYREALVHcETDNKIMLELARLYLAQDDPDS---CLRQCALLL 727
Cdd:COG3071 263 ALGRLC-------LRNQLWGKAREYLEAALAL-RPSAEAYAELARLLEQLGDPEEaaeHYRKALALA 321
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
678-768 |
2.57e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 46.70 E-value: 2.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 678 AQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLrQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHL 757
Cdd:COG3063 4 KLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYL 82
|
90
....*....|.
gi 2217331105 758 QQLLERKPDNY 768
Cdd:COG3063 83 ERALELDPSAL 93
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
616-765 |
3.77e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 48.03 E-value: 3.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 616 QVLLAKVYSKMEKLGDAITALQQARELQARVLKRVQMEQPDAVPAQKHLAAEICAEIAKHsvAQRDYEKAIKFYREALVH 695
Cdd:COG5010 6 GFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYN--KLGDFEESLALLEQALQL 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 696 CETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKP 765
Cdd:COG5010 84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
255-460 |
9.03e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 48.57 E-value: 9.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 255 LLRRCISVLETVVRTVPGLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELC 334
Cdd:COG2956 91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 335 LSYDfkvRDYPLYHLIKAQSQKKMGEIADAIKTLhmamslpgmkrigastkskdRKTEVDTSHRLSIFLELIDVHRLNGE 414
Cdd:COG2956 171 LKLD---PDCARALLLLAELYLEQGDYEEAIAAL--------------------ERALEQDPDYLPALPRLAELYEKLGD 227
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2217331105 415 QHEATKVLQDAIHEFSGTSEEvrvtIANADLALAQGDIERALSILQ 460
Cdd:COG2956 228 PEEALELLRKALELDPSDDLL----LALADLLERKEGLEAALALLE 269
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
398-537 |
1.01e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 46.34 E-value: 1.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 398 RLSIFLELIDVHRLNGEQHEATKVLQDAIHEFSgtsEEVRVTIANADLALAQGDIERALSILQNVTAEQPYFIEAREKMA 477
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDP---DNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLG 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217331105 478 DIYLK-HRKDKMlyITCFREIAERM-ANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKD 537
Cdd:COG4783 80 LALLKaGDYDEA--LALLEKALKLDpEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| MamA |
NF040959 |
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ... |
666-832 |
1.09e-05 |
|
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.
Pssm-ID: 468889 [Multi-domain] Cd Length: 204 Bit Score: 47.37 E-value: 1.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 666 AEICAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMF 745
Cdd:NF040959 37 AKMYRNKGISHAKKGRYDKAVRYLEQVARIDPDDVEALYRLGVAYLKTGQYDRAIKVLEKVLSLAPDHVKAAYRKGVALL 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 746 RKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPRFFSMAekrnsrAKLEPGF-QYCKGLYLWYT--GEPN 822
Cdd:NF040959 117 KIKDYEKAVEDLEEALEEKPDNFNLNYRLGLALDGLGQYDKAIEAFQKA------LELDPNEiKYHQAIGFMYVqkGDHE 190
|
170
....*....|
gi 2217331105 823 DALRHFNKAR 832
Cdd:NF040959 191 TAAEHFKKAM 200
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
923-1039 |
1.49e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.77 E-value: 1.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 923 QALNTFTEIAASEKEHIPALLGMATAYMILKQTPRARNQLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYDMAEDLL 1002
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADA------LLDLAEALLAAGDTEEAEELL 74
|
90 100 110
....*....|....*....|....*....|....*..
gi 2217331105 1003 KRCLRHNRSCCKAYEYMGYIMEKEQAYTDAALNYEMA 1039
Cdd:COG4235 75 ERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKL 111
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
727-833 |
2.02e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.38 E-value: 2.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 727 LQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPRFFSMAEKRNSRaklEPG 806
Cdd:COG4235 10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPD---NPE 86
|
90 100
....*....|....*....|....*..
gi 2217331105 807 FQYCKGLYLWYTGEPNDALRHFNKARK 833
Cdd:COG4235 87 ALYLLGLAAFQQGDYAEAIAAWQKLLA 113
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
920-1009 |
2.48e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.00 E-value: 2.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 920 NVEQALNTFTEIAASEKEHIPALLGMATAYMILKQTPRARNQLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYDMAE 999
Cdd:COG4235 32 RYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEA------LYLLGLAAFQQGDYAEAI 105
|
90
....*....|
gi 2217331105 1000 DLLKRCLRHN 1009
Cdd:COG4235 106 AAWQKLLALL 115
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
982-1088 |
4.40e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.41 E-value: 4.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 982 WLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIMEKEQAYTDAALNYEMAWKYsNRTNPAVGYKLAFNYLKA 1061
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL-DPDEPEARLNLGLALLKA 85
|
90 100
....*....|....*....|....*..
gi 2217331105 1062 KRYVDSIDICHQVLEAHPTYPKIRKDI 1088
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRL 112
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
25-164 |
4.53e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.41 E-value: 4.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 25 SQNVEALRMQALYYVcREGDIEKAstklENLGNTLDAMEPQNAQLFYNITLAFSRTcGRsqliLQKIQTLLERAFSLNPQ 104
Cdd:COG4783 1 AACAEALYALAQALL-LAGDYDEA----EALLEKALELDPDNPEAFALLGEILLQL-GD----LDEAIVLLHEALELDPD 70
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 105 QSEFATELGYQMILQGRVKEALKWYKTAMTLDETSVSALVGFIQCQLIEGQLQDADQQLE 164
Cdd:COG4783 71 EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALE 130
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
512-602 |
8.02e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 43.06 E-value: 8.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 512 DAYMNILEPEEAIVAYEQALNQNPKDGTLAS---KMGKALIKTHNYSMAITYYEAALKTGQKNYLC----YDLAELLLKL 584
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPLAPDalyWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKApdalLKLGLSYLEL 80
|
90
....*....|....*...
gi 2217331105 585 KWYDKAEKVLQHALAHEP 602
Cdd:COG1729 81 GDYDKARATLEELIKKYP 98
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
495-643 |
1.11e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 43.80 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 495 REIAERMANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNYLC 574
Cdd:COG5010 11 PLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPEL 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 575 Y-DLAELLLKLKWYDKAEKVLQHALAHEPVNELSALmedgrcqvLLAKVYSKMEKLGDAITALQQARELQ 643
Cdd:COG5010 91 YyNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYS--------NLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
547-648 |
1.77e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 41.69 E-value: 1.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 547 ALIKTHNYSMAITYYEAALKTGQKNYLCY-DLAELLLKLKWYDKAEKvLQHALAHEPvnelsalmEDGRCQVLLAKVYSK 625
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALnNLGLLLLEQGRYDEAIA-LEKALKLDP--------NNAEALLNLAELLLE 71
|
90 100
....*....|....*....|...
gi 2217331105 626 MEKLGDAITALQQARELQARVLK 648
Cdd:COG3063 72 LGDYDEALAYLERALELDPSALR 94
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
19-183 |
1.84e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 45.37 E-value: 1.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 19 RLLLQDSQNVEALRMQALYYVcREGDIEKASTKLENLGntldAMEPQNAQLFYNITLAFSRTcGRsqliLQKIQTLLERA 98
Cdd:COG3914 103 RALALNPDNAEALFNLGNLLL-ALGRLEEALAALRRAL----ALNPDFAEAYLNLGEALRRL-GR----LEEAIAALRRA 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 99 FSLNPQQSEFATELGYQMILQGRVKEALKWYKTAMTLDETSVSALVGFIQCQLIEGQLQDADQQLEFLNEIQQSIGKSAE 178
Cdd:COG3914 173 LELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSP 252
|
....*
gi 2217331105 179 LIYLH 183
Cdd:COG3914 253 FALLY 257
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
977-1085 |
1.92e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 44.23 E-value: 1.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 977 EFEKSWLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIMEKEQAYTDAALNYEMAWKYsNRTNPAVGYKLAF 1056
Cdd:COG0457 6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL-DPDDAEALNNLGL 84
|
90 100
....*....|....*....|....*....
gi 2217331105 1057 NYLKAKRYVDSIDICHQVLEAHPTYPKIR 1085
Cdd:COG0457 85 ALQALGRYEEALEDYDKALELDPDDAEAL 113
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
256-374 |
1.93e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 42.49 E-value: 1.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 256 LRRCISVLETVVRTVPGLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELCL 335
Cdd:COG4783 20 YDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKAL 99
|
90 100 110
....*....|....*....|....*....|....*....
gi 2217331105 336 SYDfkvRDYPLYHLIKAQSQKKMGEIADAIKTLHMAMSL 374
Cdd:COG4783 100 KLD---PEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
288-374 |
2.04e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 45.37 E-value: 2.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 288 GDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELCLSYDfkvRDYPLYHLIKAQSQKKMGEIADAIKT 367
Cdd:COG3914 92 GRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALN---PDFAEAYLNLGEALRRLGRLEEAIAA 168
|
....*..
gi 2217331105 368 LHMAMSL 374
Cdd:COG3914 169 LRRALEL 175
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
16-164 |
2.97e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 43.84 E-value: 2.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 16 AWLRLLLQDSQNVEALRMQALYYVcREGDIEKAstkLENLGNTLdAMEPQNAQLFYNITLAFSRTcGRSQLILQkiqtLL 95
Cdd:COG0457 30 DYEKALELDPDDAEALYNLGLAYL-RLGRYEEA---LADYEQAL-ELDPDDAEALNNLGLALQAL-GRYEEALE----DY 99
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217331105 96 ERAFSLNPQQSEFATELGYQMILQGRVKEALKWYKTAMTLDETSVSALVGFIQCQLIEGQLQDADQQLE 164
Cdd:COG0457 100 DKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLE 168
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
659-911 |
3.00e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 44.98 E-value: 3.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 659 PAQKHLAAEICAEIAKHSVAQRDYEKAIKFYREALVHCEtdNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATM 738
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAA--ALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 739 MM----ADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDvprffsmAEKRNSRA-KLEPGF---QYC 810
Cdd:COG3914 79 ALlelaALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEE-------ALAALRRAlALNPDFaeaYLN 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 811 KGLYLWYTGEPNDALRHFNKArkdrdwgqnalynmieICLNPDNEtvggEVFENldgdLGNSTEKQESVQLAVRTAEKLL 890
Cdd:COG3914 152 LGEALRRLGRLEEAIAALRRA----------------LELDPDNA----EALNN----LGNALQDLGRLEEAIAAYRRAL 207
|
250 260
....*....|....*....|..
gi 2217331105 891 kELKPQTVQGHVQ-LRIMENYC 911
Cdd:COG3914 208 -ELDPDNADAHSNlLFALRQAC 228
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
868-1009 |
5.52e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 41.33 E-value: 5.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 868 DLGNSTEKQESVQLAVRTAEKLLKeLKPQTVQGHVQLrimeNYCLMATKQksnVEQALNTFTEIAASEKEHIPALLGMAT 947
Cdd:COG4783 9 ALAQALLLAGDYDEAEALLEKALE-LDPDNPEAFALL----GEILLQLGD---LDEAIVLLHEALELDPDEPEARLNLGL 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217331105 948 AYMILKQTPRARNQLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYDMAEDLLKRCLRHN 1009
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDPEHPEA------YLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
503-572 |
6.24e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 40.15 E-value: 6.24e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 503 NPRSFLLLGDAYMNILEPEEAIvAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNY 572
Cdd:COG3063 25 NADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPSAL 93
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
260-352 |
6.57e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 43.83 E-value: 6.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 260 ISVLETVVRTVPGLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQ----EKVKLCSQSLELCL 335
Cdd:COG3914 132 LAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLgrleEAIAAYRRALELDP 211
|
90
....*....|....*..
gi 2217331105 336 SYDfKVRDYPLYHLIKA 352
Cdd:COG3914 212 DNA-DAHSNLLFALRQA 227
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
418-566 |
6.77e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 41.48 E-value: 6.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 418 ATKVLQDAIHEFSGTSEEVRVTIANADLALAQGDIERALSILQNVTAEQPYFIEAREKMADIYLKHRKDKMLYITCFREI 497
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 498 AERM-ANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALK 566
Cdd:COG5010 81 LQLDpNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALG 150
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
495-651 |
6.81e-04 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 42.56 E-value: 6.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 495 REIAERMA---NPRSFLLLGDAYMNILEPEEAIVAYEQALNQN-PKDGTLASKMGKALIKTHNYSMAITYYEAALKT--- 567
Cdd:COG4700 77 RELEKALEfadTVQNRVRLADALLELGRYDEAIELYEEALTGIfADDPHILLGLAQALFELGRYAEALETLEKLIAKnpd 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 568 --GQKNYLCYDLAelLLKLKWYDKAEKVLQHALAHEPVNElsalmedGRCQvlLAKVYSKMEKLGDAITALQQ------- 638
Cdd:COG4700 157 fkSSDAHLLYARA--LEALGDLEAAEAELEALARRYSGPE-------ARYR--YAKFLARQGRTAEAKELLEEildeakh 225
|
170
....*....|....*..
gi 2217331105 639 ----ARELQARVLKRVQ 651
Cdd:COG4700 226 mpkhYRRLNREWIREAK 242
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
988-1079 |
7.66e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 39.77 E-value: 7.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 988 IYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIMEKEQAYtDAALNYEMAWKYsNRTNPAVGYKLAFNYLKAKRYVDS 1067
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRY-DEAIALEKALKL-DPNNAEALLNLAELLLELGDYDEA 78
|
90
....*....|..
gi 2217331105 1068 IDICHQVLEAHP 1079
Cdd:COG3063 79 LAYLERALELDP 90
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
679-766 |
7.89e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 40.36 E-value: 7.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 679 QRDYEKAIKFYREALVHCETDN---KIMLELARLYLAQDDPDSCLRQCALLLQSDQDNE---AATMMMADLMFRKQDYEQ 752
Cdd:COG1729 6 AGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGDYDK 85
|
90
....*....|....
gi 2217331105 753 AVFHLQQLLERKPD 766
Cdd:COG1729 86 ARATLEELIKKYPD 99
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
274-374 |
9.24e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 40.56 E-value: 9.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 274 LQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELCLSYDfkvRDYPLYHLIKAQ 353
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD---PDEPEARLNLGL 80
|
90 100
....*....|....*....|.
gi 2217331105 354 SQKKMGEIADAIKTLHMAMSL 374
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKL 101
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
491-567 |
1.02e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.97 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 491 ITCFREIAERMAN----PRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLAS---KMGKALIKTHNYSMAITYYEA 563
Cdd:COG1729 13 IAAFKAFLKRYPNsplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDallKLGLSYLELGDYDKARATLEE 92
|
....
gi 2217331105 564 ALKT 567
Cdd:COG1729 93 LIKK 96
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
546-641 |
1.20e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.59 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 546 KALIKTHNYSMAITYYEAALKTGQKNYL----CYDLAELLLKLKWYDKAEKVLQHALAHEPVNELSAlmedgRCQVLLAK 621
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPLapdaLYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAP-----DALLKLGL 75
|
90 100
....*....|....*....|
gi 2217331105 622 VYSKMEKLGDAITALQQARE 641
Cdd:COG1729 76 SYLELGDYDKARATLEELIK 95
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
42-164 |
1.50e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 41.44 E-value: 1.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 42 EGDIEKASTKLENLGNTLDAMEPQNAQLFYNITLAFSRtCGRSQLILQkiqtLLERAFSLNPQQSEFATELGYQMILQGR 121
Cdd:COG4785 48 LAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDS-LGDYDLAIA----DFDQALELDPDLAEAYNNRGLAYLLLGD 122
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 2217331105 122 VKEALKWYKTAMTLDETSVSALVGFIQCQLIEGQLQDADQQLE 164
Cdd:COG4785 123 YDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLE 165
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
287-353 |
1.51e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 37.95 E-value: 1.51e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2217331105 287 SGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKlcsQSLELCLSYDFKVRDYPLYHLIKAQ 353
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLD---EAEALLAALPAADPDDPRYAALLAK 64
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
679-743 |
1.73e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 37.95 E-value: 1.73e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217331105 679 QRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADL 743
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
709-801 |
1.94e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 38.61 E-value: 1.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 709 LYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVfHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVP 788
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|...
gi 2217331105 789 RFFSMAEKRNSRA 801
Cdd:COG3063 80 AYLERALELDPSA 92
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
727-831 |
2.37e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 41.15 E-value: 2.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 727 LQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPRFFSMAEKRNSRAklePG 806
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD---AE 77
|
90 100
....*....|....*....|....*
gi 2217331105 807 FQYCKGLYLWYTGEPNDALRHFNKA 831
Cdd:COG0457 78 ALNNLGLALQALGRYEEALEDYDKA 102
|
|
| YfgM |
COG2976 |
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ... |
671-786 |
2.95e-03 |
|
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];
Pssm-ID: 442215 [Multi-domain] Cd Length: 207 Bit Score: 40.22 E-value: 2.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 671 EIAKHSVAQRDYEKAIKFYREALVHCETDN---KIMLELARLYLAQDDPDSclrqcAL-LLQSDQDNEAATMM---MADL 743
Cdd:COG2976 95 LLAKAAVDAGDLDKAAAQLQWVLDNAKDPAlkaLARLRLARVLLAQKKYDE-----ALaTLDAVKPEAFAALYaelRGDI 169
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 2217331105 744 MFRKQDYEQAVFHLQQLLERKPDNYMtLSRLIDLlrrcgKLED 786
Cdd:COG2976 170 LLAQGDKAEARAAYQKALAALPEDAP-LRQLLQM-----KLDD 206
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
445-536 |
3.51e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.84 E-value: 3.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 445 LALAQGDIERALSILQNVTAEQPYFIEAREKMADIYLKHRKDKMLyITCFREIAERMANPRSFLLLGDAYMNILEPEEAI 524
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 2217331105 525 VAYEQALNQNPK 536
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
978-1090 |
3.66e-03 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 40.48 E-value: 3.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 978 FEKSWLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIMEKEQAYTDAALNYEMAWKySNRTNPAVGYKLAFN 1057
Cdd:COG2956 7 AALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLE-RDPDRAEALLELAQD 85
|
90 100 110
....*....|....*....|....*....|...
gi 2217331105 1058 YLKAKRYVDSIDICHQVLEAHPTYPKIRKDILD 1090
Cdd:COG2956 86 YLKAGLLDRAEELLEKLLELDPDDAEALRLLAE 118
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
917-1011 |
3.69e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.84 E-value: 3.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 917 QKSNVEQALNTFTEIAASEKEHIPALLGMATAYMILKQTPRARnQLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYD 996
Cdd:COG3063 4 KLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEA------LLNLAELLLELGDYD 76
|
90
....*....|....*
gi 2217331105 997 MAEDLLKRCLRHNRS 1011
Cdd:COG3063 77 EALAYLERALELDPS 91
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
288-374 |
3.95e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.84 E-value: 3.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 288 GDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLcSQSLELCLSYDfkvRDYPLYHLIKAQSQKKMGEIADAIKT 367
Cdd:COG3063 6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDE-AIALEKALKLD---PNNAEALLNLAELLLELGDYDEALAY 81
|
....*..
gi 2217331105 368 LHMAMSL 374
Cdd:COG3063 82 LERALEL 88
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
260-374 |
5.71e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 39.99 E-value: 5.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 260 ISVLETVVRTVPGLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELCLSYDf 339
Cdd:COG0457 28 IEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELD- 106
|
90 100 110
....*....|....*....|....*....|....*
gi 2217331105 340 kvRDYPLYHLIKAQSQKKMGEIADAIKTLHMAMSL 374
Cdd:COG0457 107 --PDDAEALYNLGLALLELGRYDEAIEAYERALEL 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
93-206 |
5.73e-03 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 40.75 E-value: 5.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 93 TLLERAFSLNPQQSEFATELGYQMILQGRVKEALKWYKTAMTLDETSVSALVGFIQCQLIEGQLQDADQQLEFLNEIQqs 172
Cdd:COG3914 99 ALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELD-- 176
|
90 100 110
....*....|....*....|....*....|....
gi 2217331105 173 iGKSAElIYLHAVLAMKKNKRQEEVINLLNDVLD 206
Cdd:COG3914 177 -PDNAE-ALNNLGNALQDLGRLEEAIAAYRRALE 208
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
957-1079 |
6.91e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.40 E-value: 6.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 957 RARNQLKRIAKMNWNAIDAEEFEKSWLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIMEKEQAYTDAALNY 1036
Cdd:COG5010 32 AGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYY 111
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 2217331105 1037 EMAWKYsNRTNPAVGYKLAFNYLKAKRYVDSIDICHQVLEAHP 1079
Cdd:COG5010 112 EKALAL-SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
260-374 |
7.65e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 37.68 E-value: 7.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 260 ISVLETVVRTVPGLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELCLSYDf 339
Cdd:COG4235 3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD- 81
|
90 100 110
....*....|....*....|....*....|....*
gi 2217331105 340 kvRDYPLYHLIKAQSQKKMGEIADAIKTLHMAMSL 374
Cdd:COG4235 82 --PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
94-164 |
7.81e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.40 E-value: 7.81e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217331105 94 LLERAFSLNPQQSEFATELGYQMILQGRVKEALKWYKTAMTLDETSVSALVGFIQCQLIEGQLQDADQQLE 164
Cdd:COG5010 76 LLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQ 146
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
21-159 |
8.33e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 37.68 E-value: 8.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217331105 21 LLQDSQNVEALRMQALYYVcREGDIEKASTKLENLGntldAMEPQNAQLFYNITLAFSRTcGRSQlilqKIQTLLERAFS 100
Cdd:COG4235 10 LAANPNDAEGWLLLGRAYL-RLGRYDEALAAYEKAL----RLDPDNADALLDLAEALLAA-GDTE----EAEELLERALA 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 2217331105 101 LNPQQSEFATELGYQMILQGRVKEALKWYKTAMTLDETSVSAlvgfiqcQLIEGQLQDA 159
Cdd:COG4235 80 LDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPA-------RLLEASIAEA 131
|
|
| |
