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Conserved domains on  [gi|2217289481|ref|XP_047284933|]
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5'-nucleotidase domain-containing protein 3 isoform X4 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
5_nucleotid super family cl17687
5' nucleotidase family; This family of eukaryotic proteins includes 5' nucleotidase enzymes, ...
93-253 1.04e-67

5' nucleotidase family; This family of eukaryotic proteins includes 5' nucleotidase enzymes, such as purine 5'-nucleotidase EC:3.1.3.5.


The actual alignment was detected with superfamily member pfam05761:

Pssm-ID: 473086  Cd Length: 445  Bit Score: 217.00  E-value: 1.04e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217289481  93 LSDIEIYGFDYDYTLVFY-SKHLHTLIFNAARDLLINEHRYPAEIRKYEYDPNFAIRGLHYDVQRAVLMKIDAFHYIQlg 171
Cdd:pfam05761   1 LDNIKAYGFDMDYTLAQYkSPTFESLAYDLAKERLVEKLGYPEELLELEYDPDFAIRGLVYDKKRGNLLKVDRFGYIQ-- 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217289481 172 TVYRGLSVVPDEEVIEMYEGSHVPLeqmsdfygkSSHGNTMKQFMDIFSLPEMTLLSCVNEYFLK-NNIDYEPVHLYKDV 250
Cdd:pfam05761  79 VAYHGFRPLSDEEVRELYGNTFIPL---------SFDEPRYVQLNTLFSLPEAYLLAQLVDYFDNgGNIDYDYESLYQDV 149

                  ...
gi 2217289481 251 KKS 253
Cdd:pfam05761 150 REA 152
 
Name Accession Description Interval E-value
5_nucleotid pfam05761
5' nucleotidase family; This family of eukaryotic proteins includes 5' nucleotidase enzymes, ...
93-253 1.04e-67

5' nucleotidase family; This family of eukaryotic proteins includes 5' nucleotidase enzymes, such as purine 5'-nucleotidase EC:3.1.3.5.


Pssm-ID: 461733  Cd Length: 445  Bit Score: 217.00  E-value: 1.04e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217289481  93 LSDIEIYGFDYDYTLVFY-SKHLHTLIFNAARDLLINEHRYPAEIRKYEYDPNFAIRGLHYDVQRAVLMKIDAFHYIQlg 171
Cdd:pfam05761   1 LDNIKAYGFDMDYTLAQYkSPTFESLAYDLAKERLVEKLGYPEELLELEYDPDFAIRGLVYDKKRGNLLKVDRFGYIQ-- 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217289481 172 TVYRGLSVVPDEEVIEMYEGSHVPLeqmsdfygkSSHGNTMKQFMDIFSLPEMTLLSCVNEYFLK-NNIDYEPVHLYKDV 250
Cdd:pfam05761  79 VAYHGFRPLSDEEVRELYGNTFIPL---------SFDEPRYVQLNTLFSLPEAYLLAQLVDYFDNgGNIDYDYESLYQDV 149

                  ...
gi 2217289481 251 KKS 253
Cdd:pfam05761 150 REA 152
HAD_cN-II cd07522
cytosolic 5'-nucleotidase II (cN-II) similar to human NT5DC1 (5'-nucleotidase ...
86-250 1.28e-56

cytosolic 5'-nucleotidase II (cN-II) similar to human NT5DC1 (5'-nucleotidase domain-containing protein 1) and NT5DC2; Cytosolic 5'-nucleotidase II (cN-II), also known as purine 5'-nucleotidase, IMP-GMP specific nucleotidase, or high Km 5prime-nucleotidase, catalyzes the dephosphorylation of 6-hydroxypurine nucleoside monophosphates. It is ubiquitously expressed and likely to play an important role in the regulation of purine nucleotide interconversions and in the regulation of IMP and GMP pools within the cell. It is also acts as a phosphotransferase, catalyzing the reverse reaction, the transfer of a phosphate from a monophosphate substrate to a nucleoside acceptor, to form a nucleoside monophosphate. The nucleoside acceptor is preferentially inosine and deoxyinosine, phosphate donors include any 6-hydroxypurine monophosphate substrate of the nucleotidase reaction. Both the dephosphorylation and phosphotransferase reactions are allosterically activated by adenine-based nucleotides and 2,3-bisphosphoglycerate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319824  Cd Length: 352  Bit Score: 185.55  E-value: 1.28e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217289481  86 FSNNEMSLSDIEIYGFDYDYTLVFY-SKHLHTLIFNAARDLLINEHRYPAEIRKYEYDPNFAIRGLHYDVQRAVLMKIDA 164
Cdd:cd07522     1 FVNRSLNLEKIKVFGFDMDYTLARYnSPELESLIYDLAKERLVEEKGYPEELLKFDYDPNFPVRGLVFDKEKGNLLKLDA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217289481 165 fhYIQLGTVYRGLSVVPDEEVIEMYEGshvpleQMSDFYGKSSHgntMKQFMDIFSLPEMTLLSCVNEYFLKNNI--DYE 242
Cdd:cd07522    81 --YGQILRAYHGTRPLSDEEVREIYGS------NNTGVRDDESR---YYFLNTLFSLPEACLLAQLVDYFDNNPLesDMS 149

                  ....*...
gi 2217289481 243 PVHLYKDV 250
Cdd:cd07522   150 YRSIYQDV 157
 
Name Accession Description Interval E-value
5_nucleotid pfam05761
5' nucleotidase family; This family of eukaryotic proteins includes 5' nucleotidase enzymes, ...
93-253 1.04e-67

5' nucleotidase family; This family of eukaryotic proteins includes 5' nucleotidase enzymes, such as purine 5'-nucleotidase EC:3.1.3.5.


Pssm-ID: 461733  Cd Length: 445  Bit Score: 217.00  E-value: 1.04e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217289481  93 LSDIEIYGFDYDYTLVFY-SKHLHTLIFNAARDLLINEHRYPAEIRKYEYDPNFAIRGLHYDVQRAVLMKIDAFHYIQlg 171
Cdd:pfam05761   1 LDNIKAYGFDMDYTLAQYkSPTFESLAYDLAKERLVEKLGYPEELLELEYDPDFAIRGLVYDKKRGNLLKVDRFGYIQ-- 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217289481 172 TVYRGLSVVPDEEVIEMYEGSHVPLeqmsdfygkSSHGNTMKQFMDIFSLPEMTLLSCVNEYFLK-NNIDYEPVHLYKDV 250
Cdd:pfam05761  79 VAYHGFRPLSDEEVRELYGNTFIPL---------SFDEPRYVQLNTLFSLPEAYLLAQLVDYFDNgGNIDYDYESLYQDV 149

                  ...
gi 2217289481 251 KKS 253
Cdd:pfam05761 150 REA 152
HAD_cN-II cd07522
cytosolic 5'-nucleotidase II (cN-II) similar to human NT5DC1 (5'-nucleotidase ...
86-250 1.28e-56

cytosolic 5'-nucleotidase II (cN-II) similar to human NT5DC1 (5'-nucleotidase domain-containing protein 1) and NT5DC2; Cytosolic 5'-nucleotidase II (cN-II), also known as purine 5'-nucleotidase, IMP-GMP specific nucleotidase, or high Km 5prime-nucleotidase, catalyzes the dephosphorylation of 6-hydroxypurine nucleoside monophosphates. It is ubiquitously expressed and likely to play an important role in the regulation of purine nucleotide interconversions and in the regulation of IMP and GMP pools within the cell. It is also acts as a phosphotransferase, catalyzing the reverse reaction, the transfer of a phosphate from a monophosphate substrate to a nucleoside acceptor, to form a nucleoside monophosphate. The nucleoside acceptor is preferentially inosine and deoxyinosine, phosphate donors include any 6-hydroxypurine monophosphate substrate of the nucleotidase reaction. Both the dephosphorylation and phosphotransferase reactions are allosterically activated by adenine-based nucleotides and 2,3-bisphosphoglycerate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319824  Cd Length: 352  Bit Score: 185.55  E-value: 1.28e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217289481  86 FSNNEMSLSDIEIYGFDYDYTLVFY-SKHLHTLIFNAARDLLINEHRYPAEIRKYEYDPNFAIRGLHYDVQRAVLMKIDA 164
Cdd:cd07522     1 FVNRSLNLEKIKVFGFDMDYTLARYnSPELESLIYDLAKERLVEEKGYPEELLKFDYDPNFPVRGLVFDKEKGNLLKLDA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217289481 165 fhYIQLGTVYRGLSVVPDEEVIEMYEGshvpleQMSDFYGKSSHgntMKQFMDIFSLPEMTLLSCVNEYFLKNNI--DYE 242
Cdd:cd07522    81 --YGQILRAYHGTRPLSDEEVREIYGS------NNTGVRDDESR---YYFLNTLFSLPEACLLAQLVDYFDNNPLesDMS 149

                  ....*...
gi 2217289481 243 PVHLYKDV 250
Cdd:cd07522   150 YRSIYQDV 157
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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