|
Name |
Accession |
Description |
Interval |
E-value |
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
89-261 |
2.41e-23 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 100.63 E-value: 2.41e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 89 KKLTKQDNLALIKSL-------NlslskdggkKFKYIENLEKCVKLEVLNLSYNLIGKIEKLDKLLKLRELNLSYNKISK 161
Cdd:cd21340 12 KNITKIDNLSLCKNLkvlylydN---------KITKIENLEFLTNLTHLYLQNNQIEKIENLENLVNLKKLYLGGNRISV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 162 IEGIENMCNLQKLNLAGNEIEhipvwLGKKL-----------KSLRVLNLKGNKISSLQDISKLKPLQDLI--------- 221
Cdd:cd21340 83 VEGLENLTNLEELHIENQRLP-----PGEKLtfdprslaalsNSLRVLNISGNNIDSLEPLAPLRNLEQLDasnnqisdl 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2217375254 222 --------------SLILVENPVVTLPHYLQFTIFHLRSLESLEGQPVTTQDRQ 261
Cdd:cd21340 158 eelldllsswpslrELDLTGNPVCKKPKYRDKIILASKSLEVLDGKEITDTERQ 211
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1287-2161 |
3.76e-23 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 108.22 E-value: 3.76e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1287 RASKRQSEKEMEELHHN---IDDLLQEkksLECEVEELHRTVQKRQQQKDfidgnVESLMTELEIEKSLKHHEDIVDEIE 1363
Cdd:TIGR02168 171 KERRKETERKLERTRENldrLEDILNE---LERQLKSLERQAEKAERYKE-----LKAELRELELALLVLRLEELREELE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1364 CIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQ 1443
Cdd:TIGR02168 243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1444 ADAKDLEQHKIKQEEILKEINKivaakdsDFQCLSKKKEKLTEELQKLQKDIEMAERNedhhlqvLKESEVLLQAKRAEL 1523
Cdd:TIGR02168 323 AQLEELESKLDELAEELAELEE-------KLEELKEELESLEAELEELEAELEELESR-------LEELEEQLETLRSKV 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1524 EKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEA-LRLGETEVTEKCNHIREVKSLLEELSFQKGELNV 1602
Cdd:TIGR02168 389 AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAeLKELQAELEELEEELEELQEELERLEEALEELRE 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1603 QISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQlENHELQGLKLQHDQRVSELEKTQVAVLEEKLELE 1682
Cdd:TIGR02168 469 ELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLK-NQSGLSGILGVLSELISVDEGYEAAIEAALGGRL 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1683 nlQQI----SQQQKGEIEWQKQ----------LLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTK 1748
Cdd:TIGR02168 548 --QAVvvenLNAAKKAIAFLKQnelgrvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGV 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1749 RV---LAAAEENSKMEQSNL--------------------EKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKRE 1805
Cdd:TIGR02168 626 LVvddLDNALELAKKLRPGYrivtldgdlvrpggvitggsAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRK 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1806 AVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLV 1885
Cdd:TIGR02168 706 ELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIE 785
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1886 QQEMMFQRLQKERESEESKLEtskvtlkeqqhQLEKELTDQKSKLDQVLSKvlaaeervrtlqeeerwCESLEKTLSQTK 1965
Cdd:TIGR02168 786 ELEAQIEQLKEELKALREALD-----------ELRAELTLLNEEAANLRER-----------------LESLERRIAATE 837
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1966 RQLSEREQQLVEKSGELLALQKEadsmRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKnlltinedserdssl 2045
Cdd:TIGR02168 838 RRLEDLEEQIEELSEDIESLAAE----IEELEELIEELESELEALLNERASLEEALALLRSELEE--------------- 898
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2046 lskeqkqenscIQKEMATIELVAQDNHERARRLMKELNQMQYEYTELKKQMANQKD--LERRQMEISDAMRTLKSEVKD- 2122
Cdd:TIGR02168 899 -----------LSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQErlSEEYSLTLEEAEALENKIEDDe 967
|
890 900 910 920
....*....|....*....|....*....|....*....|....*..
gi 2217375254 2123 -EIRTSLKNLNQFLPEL-PADLEAILE------RNENLEGELESLKE 2161
Cdd:TIGR02168 968 eEARRRLKRLENKIKELgPVNLAAIEEyeelkeRYDFLTAQKEDLTE 1014
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
96-345 |
5.81e-21 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 98.08 E-value: 5.81e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 96 NLALIKSLNLSlskdgGKKFKYI-ENLEKCVKLEVLNLSYNLIGKI-EKLDKLLKLRELNLSYNKISKI-EGIENMCNLQ 172
Cdd:COG4886 134 NLTNLKELDLS-----NNQLTDLpEPLGNLTNLKSLDLSNNQLTDLpEELGNLTNLKELDLSNNQITDLpEPLGNLTNLE 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 173 KLNLAGNEIEHIPVWLGkKLKSLRVLNLKGNKISSLQDISKLKPLQdliSLILVENPVVTLPHYLQFTifHLRSLeSLEG 252
Cdd:COG4886 209 ELDLSGNQLTDLPEPLA-NLTNLETLDLSNNQLTDLPELGNLTNLE---ELDLSNNQLTDLPPLANLT--NLKTL-DLSN 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 253 QPVTTQDRQEAFERFSLEEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSLKEEAMLQKQSCEELKSDLNTKN 332
Cdd:COG4886 282 NQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSL 361
|
250
....*....|...
gi 2217375254 333 ELLKQKTIELTRA 345
Cdd:COG4886 362 LLTLLLTLGLLGL 374
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
435-995 |
2.09e-19 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 95.77 E-value: 2.09e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 435 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAgkdllykQLSGRLQLVNKLRQEALD 514
Cdd:COG1196 244 LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELA-------RLEQDIARLEERRRELEE 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 515 LELQMEKQKQEIAGKQKEIKDLQIAIdsldskdpkhshmKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKD 594
Cdd:COG1196 317 RLEELEEELAELEEELEELEEELEEL-------------EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEE 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 595 LEEQLTEGQIAANEALKKDLEgvisglqeylgtIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMR 674
Cdd:COG1196 384 LAEELLEALRAAAELAAQLEE------------LEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 675 KLEQSALQAELEKERQALKNALGKAQFSEEKEQENSELHAKLKHLQDDNNL--------LKQQLKDFQNHLNHVVDGLVR 746
Cdd:COG1196 452 AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADyegflegvKAALLLAGLRGLAGAVAVLIG 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 747 PEEVAARVDELRrklkLGTGEMNIHSPSDVLGKSLADLQKQ-------FSEILARSKWERDEAQVRERKLQEEMALQQEK 819
Cdd:COG1196 532 VEAAYEAALEAA----LAAALQNIVVEDDEVAAAAIEYLKAakagratFLPLDKIRARAALAAALARGAIGAAVDLVASD 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 820 LATGQEEFRQACERALEARMnfDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKK 899
Cdd:COG1196 608 LREADARYYVLGDTLLGRTL--VAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELA 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 900 KLEDAKSQEQVFGLDKELKKLKKAVATSDKLATAELTIAKDQLKSLHGTVMKINQERAEELQEAERFSRKAAQAArDLTR 979
Cdd:COG1196 686 ERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPP-DLEE 764
|
570
....*....|....*.
gi 2217375254 980 AEAEIELLQNLLRQKG 995
Cdd:COG1196 765 LERELERLEREIEALG 780
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1262-2022 |
2.15e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 95.89 E-value: 2.15e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1262 LENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVES 1341
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1342 LMTELeiekslkhhEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEEL 1421
Cdd:TIGR02168 314 LERQL---------EELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1422 ERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKivAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERN 1501
Cdd:TIGR02168 385 RSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLK--KLEEAELKELQAELEELEEELEELQEELERLEEA 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1502 EDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLD------RQLGHKKEELHLLQG---SMVQAKADLQEALR-- 1570
Cdd:TIGR02168 463 LEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEgfsegvKALLKNQSGLSGILGvlsELISVDEGYEAAIEaa 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1571 LGETE---VTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDML- 1646
Cdd:TIGR02168 543 LGGRLqavVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLl 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1647 -------QLENHELQGLKLQHDQRVSELEKTQVAVLEEKLelenlqqisqqqKGEIEWQKQLLERdKREIERMTAESRAL 1719
Cdd:TIGR02168 623 ggvlvvdDLDNALELAKKLRPGYRIVTLDGDLVRPGGVIT------------GGSAKTNSSILER-RREIEELEEKIEEL 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1720 QSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQ 1799
Cdd:TIGR02168 690 EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEER 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1800 LQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEE 1879
Cdd:TIGR02168 770 LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1880 NKLKLVQQEMMFQRLQKERESEESKLEtskvTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEerwCESLEK 1959
Cdd:TIGR02168 850 LSEDIESLAAEIEELEELIEELESELE----ALLNERASLEEALALLRSELEELSEELRELESKRSELRRE---LEELRE 922
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217375254 1960 TLSQTKRQLSEREQQLVEKSGELLALQK-EADSMRAdfslLRNQFLTERKKAEKQVASLKEALK 2022
Cdd:TIGR02168 923 KLAQLELRLEGLEVRIDNLQERLSEEYSlTLEEAEA----LENKIEDDEEEARRRLKRLENKIK 982
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
443-1064 |
9.15e-19 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 93.85 E-value: 9.15e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 443 EKKISAAQTRLSELHDEIEKAEQQI--L----RATEEFKQLEEAIQLKKISEAGkdLLYKQLSGRLQlvnKLRQEALDLE 516
Cdd:COG1196 178 ERKLEATEENLERLEDILGELERQLepLerqaEKAERYRELKEELKELEAELLL--LKLRELEAELE---ELEAELEELE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 517 LQMEKQKQEIAGKQKEIKDLQIAIDSLdskdpkhshmkaqksgkEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLE 596
Cdd:COG1196 253 AELEELEAELAELEAELEELRLELEEL-----------------ELELEEAQAEEYELLAELARLEQDIARLEERRRELE 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 597 EQLTEgqiaaNEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEivaMDAENMRKL 676
Cdd:COG1196 316 ERLEE-----LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE---EELEELAEE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 677 EQSALQAELEKERQALKNALGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEVAARVDE 756
Cdd:COG1196 388 LLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 757 LRRKLKLGTGEMNihspsDVLGKSLADLQKQFSEILARSKWERDEAQVRERKLQEEMALQQEKLA---TGQEEFRQACER 833
Cdd:COG1196 468 LLEEAALLEAALA-----ELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAvliGVEAAYEAALEA 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 834 ALEARMNFDKRQHEARIQQMeneIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQ----------LRELEKKKKLED 903
Cdd:COG1196 543 ALAAALQNIVVEDDEVAAAA---IEYLKAAKAGRATFLPLDKIRARAALAAALARGAIgaavdlvasdLREADARYYVLG 619
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 904 AKSQEQVFGLDKELKKLKKAVATSDKL--ATAELTIAKDQLKSLHGTVMKINQERAEELQEAERFSRKAAQAARDLTRAE 981
Cdd:COG1196 620 DTLLGRTLVAARLEAALRRAVTLAGRLreVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEAL 699
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 982 AEIELLQNLLRQKGEQFRLEmektgvgtgansqVLEIEKLNETMERQRTEIARLQNVLDLTGSDNKGGFENVLEEIAELR 1061
Cdd:COG1196 700 LAEEEEERELAEAEEERLEE-------------ELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELE 766
|
...
gi 2217375254 1062 REV 1064
Cdd:COG1196 767 REL 769
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
55-250 |
1.96e-18 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 90.38 E-value: 1.96e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 55 QVEIADENNMLLDYQDHKGADSHAGVRYITEALIKKLTKQDNLALIKSLNLSLSKDGGKKFKYIENLEKCVKLEVLNLSY 134
Cdd:COG4886 43 LSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEELSNLTNLESLDLSG 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 135 NLIGKI-EKLDKLLKLRELNLSYNKISKI-EGIENMCNLQKLNLAGNEIEHIPVWLGkKLKSLRVLNLKGNKISSLQD-I 211
Cdd:COG4886 123 NQLTDLpEELANLTNLKELDLSNNQLTDLpEPLGNLTNLKSLDLSNNQLTDLPEELG-NLTNLKELDLSNNQITDLPEpL 201
|
170 180 190
....*....|....*....|....*....|....*....
gi 2217375254 212 SKLKPLQdliSLILVENPVVTLPHylqfTIFHLRSLESL 250
Cdd:COG4886 202 GNLTNLE---ELDLSGNQLTDLPE----PLANLTNLETL 233
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1477-2208 |
1.42e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 90.12 E-value: 1.42e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1477 LSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKeseVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQG 1556
Cdd:TIGR02168 198 LERQLKSLERQAEKAERYKELKAELRELELALLV---LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1557 SMVQAKADLQEAlrlgETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQvvlrQMSKHK 1636
Cdd:TIGR02168 275 EVSELEEEIEEL----QKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELA----ELEEKL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1637 TELKNILDMLQLENHELQGLKLQHDQRVSELEKtqvAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAES 1716
Cdd:TIGR02168 347 EELKEELESLEAELEELEAELEELESRLEELEE---QLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1717 RALQScvECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENskmeqsnLEKLELNVRKLQQELDQLNRDKLSLHNDISAM 1796
Cdd:TIGR02168 424 EELLK--KLEEAELKELQAELEELEEELEELQEELERLEEA-------LEELREELEEAEQALDAAERELAQLQARLDSL 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1797 QQQLQEKREAVNSLQEELAN------------------------------------VQDHLNLAKQDLLHTTKHQDVLLS 1840
Cdd:TIGR02168 495 ERLQENLEGFSEGVKALLKNqsglsgilgvlselisvdegyeaaieaalggrlqavVVENLNAAKKAIAFLKQNELGRVT 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1841 -------EQTRLQKDISEWANRFEDCQ---KEEETKQQQLQVLQN------------EIEENKLKLVQQEMMF------- 1891
Cdd:TIGR02168 575 flpldsiKGTEIQGNDREILKNIEGFLgvaKDLVKFDPKLRKALSyllggvlvvddlDNALELAKKLRPGYRIvtldgdl 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1892 ----------------QRLQKERESEEskLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCE 1955
Cdd:TIGR02168 655 vrpggvitggsaktnsSILERRREIEE--LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALR 732
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1956 SLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQ---LEKNL 2032
Cdd:TIGR02168 733 KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAldeLRAEL 812
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2033 LTINEDSERDSSLLSKEQKQENSCiQKEMATIELVAQDNHERARRLMKELNQMQYEYTELKKQMA---NQKDLERRQMEI 2109
Cdd:TIGR02168 813 TLLNEEAANLRERLESLERRIAAT-ERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEallNERASLEEALAL 891
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2110 SDAMRTLKSEVKDEIRTSLKNLNQFLPELPADLEAILERNENLEGELESLKENLPftmnegpfeEKLNFSQVHIMDEHWR 2189
Cdd:TIGR02168 892 LRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS---------EEYSLTLEEAEALENK 962
|
810
....*....|....*....
gi 2217375254 2190 GEALREKLRHREDRLKAQL 2208
Cdd:TIGR02168 963 IEDDEEEARRRLKRLENKI 981
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1741-2002 |
9.37e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 80.75 E-value: 9.37e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1741 EKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDH 1820
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEER 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1821 LNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERES 1900
Cdd:COG1196 318 LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1901 EESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEKSG 1980
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEA 477
|
250 260
....*....|....*....|..
gi 2217375254 1981 ELLALQKEADSMRADFSLLRNQ 2002
Cdd:COG1196 478 ALAELLEELAEAAARLLLLLEA 499
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1685-2209 |
1.81e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.60 E-value: 1.81e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1685 QQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSN 1764
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEER 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1765 LEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTR 1844
Cdd:COG1196 318 LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1845 LQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQemmfQRLQKERESEESKLETSKVTLKEQQHQLEKELT 1924
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEE----EEALEEAAEEEAELEEEEEALLELLAELLEEAA 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1925 DQKSKLDQVLSKVLAAEERVRTLQEEErwcESLEKTLSQTKRQLSEREQQLVEKSGELLA---LQKEADSMRADFSLLRN 2001
Cdd:COG1196 474 LLEAALAELLEELAEAAARLLLLLEAE---ADYEGFLEGVKAALLLAGLRGLAGAVAVLIgveAAYEAALEAALAAALQN 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2002 QFLTERKKAEKQVASLKEAL----------KIQRSQLEKNLLTINEdSERDSSLLSKEQKQENSCIQKEMATI--ELVAQ 2069
Cdd:COG1196 551 IVVEDDEVAAAAIEYLKAAKagratflpldKIRARAALAAALARGA-IGAAVDLVASDLREADARYYVLGDTLlgRTLVA 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2070 DNHERARRLMKELNQMQYEYT------------ELKKQMANQKDLERRQMEISDAMRTLKSEVKDEIRTSLKNLNQFLPE 2137
Cdd:COG1196 630 ARLEAALRRAVTLAGRLREVTlegeggsaggslTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEEREL 709
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217375254 2138 LPADLEAILERNENLEGELESLKENLPFTMNEGPFEEKLNFSQVHIMDEhwrgEALREKLRHREDRLKAQLR 2209
Cdd:COG1196 710 AEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPE----PPDLEELERELERLEREIE 777
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1260-1924 |
5.69e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.17 E-value: 5.69e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1260 HNLENEVSRLEDIMQHLKSKKREerwMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNV 1339
Cdd:TIGR02168 312 ANLERQLEELEAQLEELESKLDE---LAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1340 ESLmtELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAE-SELSCTKEKTKNAVEKFTDAKRSLLQTESDA 1418
Cdd:TIGR02168 389 AQL--ELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAElKELQAELEELEEELEELQEELERLEEALEEL 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1419 EELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLS------KKKEK--------- 1483
Cdd:TIGR02168 467 REELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSelisvdEGYEAaieaalggr 546
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1484 ----LTEELQKLQKDIEMAERNEDHHLQVLkeseVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELH-----LL 1554
Cdd:TIGR02168 547 lqavVVENLNAAKKAIAFLKQNELGRVTFL----PLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRkalsyLL 622
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1555 QGSMV----QAKADLQEALRLGETEVTEKCNHIREVKSlleeLSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLR 1630
Cdd:TIGR02168 623 GGVLVvddlDNALELAKKLRPGYRIVTLDGDLVRPGGV----ITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEK 698
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1631 QMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIE 1710
Cdd:TIGR02168 699 ALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELA 778
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1711 RMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLH 1790
Cdd:TIGR02168 779 EAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1791 NDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEwanrfedCQKEEETKQQQL 1870
Cdd:TIGR02168 859 AEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEE-------LREKLAQLELRL 931
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 2217375254 1871 QVLQNEIEENKLKL-VQQEMMFQrlqkERESEESKLETSKVTLKEQQHQLEKELT 1924
Cdd:TIGR02168 932 EGLEVRIDNLQERLsEEYSLTLE----EAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1294-2104 |
5.91e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 78.19 E-value: 5.91e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1294 EKEMEELHHNIDDLLQEKKSLECEVEELHR--TVQKRQQQKDFIDGNVESLMTELEIEKSLKHHEDIVDEIECIEKTLLK 1371
Cdd:TIGR02169 183 EENIERLDLIIDEKRQQLERLRREREKAERyqALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1372 RRSELREADRLLAEAESELSCTKEKTKNAV-EKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLE 1450
Cdd:TIGR02169 263 LEKRLEEIEQLLEELNKKIKDLGEEEQLRVkEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1451 QhkikqeeilkeinkivaakdsDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQV 1530
Cdd:TIGR02169 343 R---------------------EIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREI 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1531 TSQQQEMavldRQLGHKKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQ 1610
Cdd:TIGR02169 402 NELKREL----DRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEE 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1611 LTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQVAVleEKLELENLQQISQQ 1690
Cdd:TIGR02169 478 YDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAI--EVAAGNRLNNVVVE 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1691 QKGEIEWQKQLLERdkREIERMT----AESRALQSCVECLSKEKE-----DLQEKCDIWEKKLAQ------------TKR 1749
Cdd:TIGR02169 556 DDAVAKEAIELLKR--RKAGRATflplNKMRDERRDLSILSEDGVigfavDLVEFDPKYEPAFKYvfgdtlvvedieAAR 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1750 VLAAAEENSKMEQSNLEK-------------LELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELAN 1816
Cdd:TIGR02169 634 RLMGKYRMVTLEGELFEKsgamtggsraprgGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSD 713
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1817 vqdhlnlAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRL-Q 1895
Cdd:TIGR02169 714 -------ASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLeA 786
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1896 KERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWC-----------ESLEKTLSQT 1964
Cdd:TIGR02169 787 RLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLkeqiksiekeiENLNGKKEEL 866
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1965 KRQLSEREQQLVEKSGELLALQKEADSMRADFSLLR---NQFLTERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSER 2041
Cdd:TIGR02169 867 EEELEELEAALRDLESRLGDLKKERDELEAQLRELErkiEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEI 946
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217375254 2042 DSSLLSKEQKQEN-SCIQKEMATIELV---AQDNHERARRLMKEL----NQMQYEYTELKKQMANQKDLER 2104
Cdd:TIGR02169 947 PEEELSLEDVQAElQRVEEEIRALEPVnmlAIQEYEEVLKRLDELkekrAKLEEERKAILERIEEYEKKKR 1017
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1290-1879 |
6.14e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.05 E-value: 6.14e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1290 KRQSEKEMEELHHN---IDDLLQEK----KSLE--CEVEELHRTVQKRQQQKDfidgnveSLMTELEIEKSLKHHEDIVD 1360
Cdd:COG1196 174 KEEAERKLEATEENlerLEDILGELerqlEPLErqAEKAERYRELKEELKELE-------AELLLLKLRELEAELEELEA 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1361 EIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLR 1440
Cdd:COG1196 247 ELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1441 SLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKR 1520
Cdd:COG1196 327 ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1521 AELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGEL 1600
Cdd:COG1196 407 EAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1601 NVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNIL----------------DMLQLENHE--------LQGL 1656
Cdd:COG1196 487 AEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLigveaayeaaleaalaAALQNIVVEddevaaaaIEYL 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1657 KLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEk 1736
Cdd:COG1196 567 KAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGR- 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1737 cdiWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELAN 1816
Cdd:COG1196 646 ---LREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELE 722
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217375254 1817 VQDHLNLAKQDLLHttkhqdvLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEE 1879
Cdd:COG1196 723 EEALEEQLEAEREE-------LLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
435-1060 |
1.07e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.40 E-value: 1.07e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 435 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDLLYKQLSGRLQlvnKLRQEALD 514
Cdd:TIGR02168 258 LTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLE---ELESKLDE 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 515 LELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKhshMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKD 594
Cdd:TIGR02168 335 LAEELAELEEKLEELKEELESLEAELEELEAELEE---LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLER 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 595 LEEQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLE--------IV 666
Cdd:TIGR02168 412 LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAErelaqlqaRL 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 667 AMDAENMRKLE---------------------------------QSALQAELEKERQAL----------------KNALG 697
Cdd:TIGR02168 492 DSLERLQENLEgfsegvkallknqsglsgilgvlselisvdegyEAAIEAALGGRLQAVvvenlnaakkaiaflkQNELG 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 698 KAQFSEE---KEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEVAARVDELRRKLKLGTGEMNIHSPS 774
Cdd:TIGR02168 572 RVTFLPLdsiKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLD 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 775 DVL---------GKSLADLQKQFSEI-LARSKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEAR-----M 839
Cdd:TIGR02168 652 GDLvrpggvitgGSAKTNSSILERRReIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSrqisaL 731
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 840 NFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEkkKKLEDAKSQEQVFGLDKELKK 919
Cdd:TIGR02168 732 RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE--AQIEQLKEELKALREALDELR 809
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 920 LKKAvATSDKLATAELTIA--KDQLKSLHGTVMKINQERAEELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQKGEQ 997
Cdd:TIGR02168 810 AELT-LLNEEAANLRERLEslERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEA 888
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217375254 998 F-RLEMEKTGVGTGANSQVLEIEKLNETMERQRTEIARLQNVLDLTgsdnKGGFENVLEEIAEL 1060
Cdd:TIGR02168 889 LaLLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL----EVRIDNLQERLSEE 948
|
|
| LRR_9 |
pfam14580 |
Leucine-rich repeat; |
130-279 |
1.62e-13 |
|
Leucine-rich repeat;
Pssm-ID: 405295 [Multi-domain] Cd Length: 175 Bit Score: 70.95 E-value: 1.62e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 130 LNLSYNLIGKIEKLDKLL-KLRELNLSYNKISKIEGIENMCNLQKLNLAGNEIEHIPVWLGKKLKSLRVLNLKGNKISSL 208
Cdd:pfam14580 24 LDLRGYKIPIIENLGATLdQFDTIDFSDNEIRKLDGFPLLRRLKTLLLNNNRICRIGEGLGEALPNLTELILTNNNLQEL 103
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217375254 209 QDISKLKPLQDLISLILVENPVVTLPHYLQFTIFHLRSLESLEGQPVTTQDRQEAFERFSLEEVERLERDL 279
Cdd:pfam14580 104 GDLDPLASLKKLTFLSLLRNPVTNKPHYRLYVIYKVPQLRLLDFRKVKQKERQAAEKMFRSKQGKQLAKEI 174
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1418-2017 |
1.65e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.51 E-value: 1.65e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1418 AEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEM 1497
Cdd:COG1196 220 EELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1498 AERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRLgetevt 1577
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE------ 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1578 ekcnhIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGLK 1657
Cdd:COG1196 374 -----LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1658 LQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRAlqscveclSKEKEDLQEKC 1737
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG--------VKAALLLAGLR 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1738 DIWEKK--LAQTKRVLAAAEENSkMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELA 1815
Cdd:COG1196 521 GLAGAVavLIGVEAAYEAALEAA-LAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGA 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1816 NVQDHLNLAKQDLLHTTKHQDVLLSEqtrlqkdiSEWANRFEDCQKEEETKQQQLQVLQNEIEEnklkLVQQEMMFQRLQ 1895
Cdd:COG1196 600 AVDLVASDLREADARYYVLGDTLLGR--------TLVAARLEAALRRAVTLAGRLREVTLEGEG----GSAGGSLTGGSR 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1896 KERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEErwceslEKTLSQTKRQLSEREQQL 1975
Cdd:COG1196 668 RELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEE------EALEEQLEAEREELLEEL 741
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 2217375254 1976 VEKSGELLALQKEADSMRADFSLLRnqflTERKKAEKQVASL 2017
Cdd:COG1196 742 LEEEELLEEEALEELPEPPDLEELE----RELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
509-904 |
3.05e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.86 E-value: 3.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 509 RQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKhshMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKE 588
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQ---LRKELEELSRQISALRKDLARLEAEVEQLEERIAQL 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 589 TEEIKDLEEQLTE--GQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEiv 666
Cdd:TIGR02168 753 SKELTELEAEIEEleERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLE-- 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 667 amdaENMRKLEQSALQAELEKERQALKNALGKAQFSEEKEQENsELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLvr 746
Cdd:TIGR02168 831 ----RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIE-ELESELEALLNERASLEEALALLRSELEELSEEL-- 903
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 747 pEEVAARVDELRRKLKLgtgemnihspsdvlgksladLQKQFSEILARskweRDEAQVRERKLQEEMALQQEKLATGQEE 826
Cdd:TIGR02168 904 -RELESKRSELRRELEE--------------------LREKLAQLELR----LEGLEVRIDNLQERLSEEYSLTLEEAEA 958
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 827 frqaceraLEARMNFDKRQHEARIQQMENEIHYLQE-NLKSMEEiqgltdlqLQEADEEKERILAQLRELEK-KKKLEDA 904
Cdd:TIGR02168 959 --------LENKIEDDEEEARRRLKRLENKIKELGPvNLAAIEE--------YEELKERYDFLTAQKEDLTEaKETLEEA 1022
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1606-2161 |
8.18e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.20 E-value: 8.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1606 ERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQvavleeKLELENLQ 1685
Cdd:COG1196 222 LKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQ------AEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1686 QISQQQKGEIEwQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNL 1765
Cdd:COG1196 296 ELARLEQDIAR-LEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1766 EKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRL 1845
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1846 QKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEmmfQRLQKERESEESKLETSKVTLKEQQHQLEKELTD 1925
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLL---EAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIG 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1926 QKSKLDQVLSKVLAA--EERVRTLQEEERWCESLEKT-----------LSQTKRQLSEREQQLVEKSGELLALQKEADSM 1992
Cdd:COG1196 532 VEAAYEAALEAALAAalQNIVVEDDEVAAAAIEYLKAakagratflplDKIRARAALAAALARGAIGAAVDLVASDLREA 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1993 RADFSLLRNQFL--------------------TERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSERDSSLLSKEQKQ 2052
Cdd:COG1196 612 DARYYVLGDTLLgrtlvaarleaalrravtlaGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2053 ENSCIQKEMATIELVAQDNHERARRLMKELNQMQYE-YTELKKQMANQKDLERRQMEISDAMRTLKSEVK-DEIRTSLKN 2130
Cdd:COG1196 692 ELELEEALLAEEEEERELAEAEEERLEEELEEEALEeQLEAEREELLEELLEEEELLEEEALEELPEPPDlEELERELER 771
|
570 580 590
....*....|....*....|....*....|....*...
gi 2217375254 2131 LNQFLPELPA-------DLEAILERNENLEGELESLKE 2161
Cdd:COG1196 772 LEREIEALGPvnllaieEYEELEERYDFLSEQREDLEE 809
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1291-1975 |
8.30e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 74.33 E-value: 8.30e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1291 RQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESLMTELEIEKSLKhhEDIVDEIECIEKTLL 1370
Cdd:TIGR02169 290 LRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRR--DKLTEEYAELKEELE 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1371 KRRSELREADRLLAEaeselscTKEKTKNAVEKFTDAKRSLlqtesdaEELERRAQETAVNLVKADQQLRSLQADAKDLE 1450
Cdd:TIGR02169 368 DLRAELEEVDKEFAE-------TRDELKDYREKLEKLKREI-------NELKRELDRLQEELQRLSEELADLNAAIAGIE 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1451 QHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQV 1530
Cdd:TIGR02169 434 AKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVE 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1531 T---SQQQEMAVLDRQLGHKKEELHL---------LQGSMVQAKADLQEALRLGETEVTEKC-----NHIREVKSLLEEL 1593
Cdd:TIGR02169 514 EvlkASIQGVHGTVAQLGSVGERYATaievaagnrLNNVVVEDDAVAKEAIELLKRRKAGRAtflplNKMRDERRDLSIL 593
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1594 SfQKGELN-----VQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKtelknildMLQLENHELQ--------GLKLQH 1660
Cdd:TIGR02169 594 S-EDGVIGfavdlVEFDPKYEPAFKYVFGDTLVVEDIEAARRLMGKYR--------MVTLEGELFEksgamtggSRAPRG 664
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1661 DQRVSELEKTQVAVLEEKLELENLQQISQQQkgEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIW 1740
Cdd:TIGR02169 665 GILFSRSEPAELQRLRERLEGLKRELSSLQS--ELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEEL 742
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1741 EKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLslhndisamQQQLQEKREAVNSLQEELANVQDH 1820
Cdd:TIGR02169 743 EEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLS---------HSRIPEIQAELSKLEEEVSRIEAR 813
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1821 LNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERE- 1899
Cdd:TIGR02169 814 LREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDe 893
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217375254 1900 --SEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKtLSQTKRQLSEREQQL 1975
Cdd:TIGR02169 894 leAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLED-VQAELQRVEEEIRAL 970
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
451-1001 |
1.24e-12 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 73.80 E-value: 1.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 451 TRLSELHDEIEKAEQQ------ILRATEEFKQLEEAIQLKKISEAGKDLLYKQLSGRL--QLVNKLRQEALDLELQMEKQ 522
Cdd:COG4913 235 DDLERAHEALEDAREQiellepIRELAERYAAARERLAELEYLRAALRLWFAQRRLELleAELEELRAELARLEAELERL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 523 KQEIAGKQKEIKDLQIAIDSLDSKDpkHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLteg 602
Cdd:COG4913 315 EARLDALREELDELEAQIRGNGGDR--LEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEA--- 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 603 qiaanEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLT----EVEQERDQL-EIVAMDAENMR--- 674
Cdd:COG4913 390 -----AALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSnipaRLLALRDALaEALGLDEAELPfvg 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 675 -----KLEQSALQAELEK---------------ERQALK--NAL---GKAQFSEEKEQENSELHAKLkhlqDDNNLL-KQ 728
Cdd:COG4913 465 elievRPEEERWRGAIERvlggfaltllvppehYAAALRwvNRLhlrGRLVYERVRTGLPDPERPRL----DPDSLAgKL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 729 QLKD--FQNHLNHVvdgLVRPEEVA--ARVDELRR-----------KLKLGTGEMNIHSPSD---VLGKS----LADLQK 786
Cdd:COG4913 541 DFKPhpFRAWLEAE---LGRRFDYVcvDSPEELRRhpraitragqvKGNGTRHEKDDRRRIRsryVLGFDnrakLAALEA 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 787 QfseiLARSKWERDEAQVRERKLQEEMALQQEKlatgqeefRQACERALEARMNF-DKRQHEARIQQMENEihyLQENLK 865
Cdd:COG4913 618 E----LAELEEELAEAEERLEALEAELDALQER--------REALQRLAEYSWDEiDVASAEREIAELEAE---LERLDA 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 866 SMEEIQGLTDlQLQEADEEKERILAQLRELEKK-----KKLEDAKSQEQvfgldkelkklkkavATSDKLATAELTIAKD 940
Cdd:COG4913 683 SSDDLAALEE-QLEELEAELEELEEELDELKGEigrleKELEQAEEELD---------------ELQDRLEAAEDLARLE 746
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217375254 941 QLKSLhgtvmkinQERAEELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQKGEQFRLE 1001
Cdd:COG4913 747 LRALL--------EERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1280-2021 |
1.40e-12 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 73.61 E-value: 1.40e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1280 KREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESLMTELEIEKSLKHH--ED 1357
Cdd:pfam15921 88 KDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDmlED 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1358 IVDEIECIEKTLLKRRSELREADRLLAEAEsELSCTKEKTKNAVEkfTDAKRSLLQTESDA-EELERRAQETAVNLVKAD 1436
Cdd:pfam15921 168 SNTQIEQLRKMMLSHEGVLQEIRSILVDFE-EASGKKIYEHDSMS--TMHFRSLGSAISKIlRELDTEISYLKGRIFPVE 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1437 QQLRSLQADAKD-----LEQHKIKQEEILKEinkivaaKDSDFQCLSKKKEKLTEELQKLQKDIEMAERnedhhlQVLKE 1511
Cdd:pfam15921 245 DQLEALKSESQNkiellLQQHQDRIEQLISE-------HEVEITGLTEKASSARSQANSIQSQLEIIQE------QARNQ 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1512 SEVLLQakraELEKLKSQVTSQQQEMAVLDRQLGHKKEElhlLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLE 1591
Cdd:pfam15921 312 NSMYMR----QLSDLESTVSQLRSELREAKRMYEDKIEE---LEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLA 384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1592 ELSFQKGELNVQiserKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQ 1671
Cdd:pfam15921 385 DLHKREKELSLE----KEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESL 460
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1672 VAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRvl 1751
Cdd:pfam15921 461 EKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKN-- 538
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1752 aaAEENSKMEQSNLEKLELN-------VRKLQQELDQLNR--------------DKLSLHNDISAMQQQLQE----KREA 1806
Cdd:pfam15921 539 --EGDHLRNVQTECEALKLQmaekdkvIEILRQQIENMTQlvgqhgrtagamqvEKAQLEKEINDRRLELQEfkilKDKK 616
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1807 VNSLQEELANVQDhLNLAKQDLLHTTkhqdvllSEQTRLQKDIS----EWANRFEDCQKEEETKQQQLQVLQNEIEEnkl 1882
Cdd:pfam15921 617 DAKIRELEARVSD-LELEKVKLVNAG-------SERLRAVKDIKqerdQLLNEVKTSRNELNSLSEDYEVLKRNFRN--- 685
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1883 KLVQQEMMFQRLQKERESEESKLETSKVTLKEQQHQ----------LEKELTDQKSKLDQVLSKVLAAEERVRTLQEEER 1952
Cdd:pfam15921 686 KSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSdghamkvamgMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKH 765
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217375254 1953 WCESLEKTLSQtkrqlsereqqlveksgELLALQKEADSMRADFSLLRNQfltERKKAEKqVASLKEAL 2021
Cdd:pfam15921 766 FLKEEKNKLSQ-----------------ELSTVATEKNKMAGELEVLRSQ---ERRLKEK-VANMEVAL 813
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
430-894 |
1.42e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.43 E-value: 1.42e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 430 RGHTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDLLYK----QLSGRLQLV 505
Cdd:COG1196 302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLeaeaELAEAEEEL 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 506 NKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSK----DPKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEI 581
Cdd:COG1196 382 EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEEleelEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 582 LSRIAKETEEIKDLEEQLTE--GQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNecRKLRDEKETLLQRLTEVEQE 659
Cdd:COG1196 462 LELLAELLEEAALLEAALAEllEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGL--RGLAGAVAVLIGVEAAYEAA 539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 660 RDQLEIVAMDAENMRKLEQSALQAELEKERQA-----LKNALGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQ 734
Cdd:COG1196 540 LEAALAAALQNIVVEDDEVAAAAIEYLKAAKAgratfLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLG 619
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 735 NHLNHVVDGLVRPEEVAARVDELRRKLKLGTGEMNIHSPsdvlGKSLADLQKQFSEILARSKwERDEAQVRERKLQEEMA 814
Cdd:COG1196 620 DTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSA----GGSLTGGSRRELLAALLEA-EAELEELAERLAEEELE 694
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 815 LQQEKLATGQEEFRQACERALEARMNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRE 894
Cdd:COG1196 695 LEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLER 774
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1258-1785 |
1.87e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.05 E-value: 1.87e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1258 EHHNLENEVSRLEDIMQHLKSKKREERwmrASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFidg 1337
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELE---AELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIAR--- 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1338 nveslmTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESD 1417
Cdd:COG1196 307 ------LEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1418 AEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEM 1497
Cdd:COG1196 381 LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1498 AERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMV----------QAKADLQE 1567
Cdd:COG1196 461 LLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLagavavligvEAAYEAAL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1568 ALRLGETEVTEKCNHIREVKSLLEELSFQKGE------LNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKN 1641
Cdd:COG1196 541 EAALAAALQNIVVEDDEVAAAAIEYLKAAKAGratflpLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGD 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1642 ILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQS 1721
Cdd:COG1196 621 TLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALL 700
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217375254 1722 CVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLEL-----------NVRKLQQELDQLNRD 1785
Cdd:COG1196 701 AEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEeealeelpeppDLEELERELERLERE 775
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
83-250 |
2.53e-12 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 71.50 E-value: 2.53e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 83 ITEALIKKLTKQDNLALIKSLNLSLSKDGGKKFKYIENLEKCVKLEVLNLSYNLIGKIEKLDKLLKLRELNLSYNkiski 162
Cdd:COG4886 32 LLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGN----- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 163 EGIENMCNLQKLNLAGNEIEHIPVWLGkKLKSLRVLNLKGNKISSLQdiSKLKPLQDLISLILVENPVVTLPHylqfTIF 242
Cdd:COG4886 107 EELSNLTNLESLDLSGNQLTDLPEELA-NLTNLKELDLSNNQLTDLP--EPLGNLTNLKSLDLSNNQLTDLPE----ELG 179
|
....*...
gi 2217375254 243 HLRSLESL 250
Cdd:COG4886 180 NLTNLKEL 187
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1310-1952 |
3.20e-11 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 69.31 E-value: 3.20e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1310 EKKSLECEVEELHRTVQKRQQQKDFIDGNVESLMTELEIEK--------SLKHHEDIVDEIECIEKTLLKRRSELREADR 1381
Cdd:TIGR00606 406 EAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKeilekkqeELKFVIKELQQLEGSSDRILELDQELRKAER 485
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1382 LLAEAE--SELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEI 1459
Cdd:TIGR00606 486 ELSKAEknSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSL 565
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1460 LKEINKIVAAKDSdFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLL-------------QAKRAELEKL 1526
Cdd:TIGR00606 566 LGYFPNKKQLEDW-LHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLssyedklfdvcgsQDEESDLERL 644
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1527 KSQVTSQQQEMAVLD----------RQLGHKKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSFQ 1596
Cdd:TIGR00606 645 KEEIEKSSKQRAMLAgatavysqfiTQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKR 724
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1597 KGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGLK-LQHDQRVSElektQVAVL 1675
Cdd:TIGR00606 725 RDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKvCLTDVTIME----RFQME 800
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1676 EEKLELENLQQISQQQKGEIEWQKQLLERDKREIERmtaESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAE 1755
Cdd:TIGR00606 801 LKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQH---ELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIG 877
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1756 ENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKH- 1834
Cdd:TIGR00606 878 TNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYm 957
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1835 -------QDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENK---------LKLVQQEMMFQRLQKER 1898
Cdd:TIGR00606 958 kdienkiQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKiqerwlqdnLTLRKRENELKEVEEEL 1037
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 2217375254 1899 ESEESKLETSKVTLKEQQHQ-LEKELTDQKSKLDQVLSKVLAAEERVRTLQEEER 1952
Cdd:TIGR00606 1038 KQHLKEMGQMQVLQMKQEHQkLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELR 1092
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
245-1038 |
3.91e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.93 E-value: 3.91e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 245 RSLESLEGQPVTTQDRQEAferfsLEEVERLERDLEKKmiETEELKSKQTRFLEEIK-NQDKLNKSLKEEAMLQKQScEE 323
Cdd:TIGR02168 200 RQLKSLERQAEKAERYKEL-----KAELRELELALLVL--RLEELREELEELQEELKeAEEELEELTAELQELEEKL-EE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 324 LKSDLNTKNELLKQKTIELTRACQKQYELEQELAFYKidAKFEPLNYYPSEYAEidkapdespYIGKSRYKRNMFATESy 403
Cdd:TIGR02168 272 LRLEVSELEEEIEELQKELYALANEISRLEQQKQILR--ERLANLERQLEELEA---------QLEELESKLDELAEEL- 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 404 iidSAQAVQIKKMEPD-EQLRNDHMNLRGHTP-LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAI 481
Cdd:TIGR02168 340 ---AELEEKLEELKEElESLEAELEELEAELEeLESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 482 Q---------LKKISEAGKDLLYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSH 552
Cdd:TIGR02168 417 ErlqqeieelLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 553 MKAQKSGKEQQLDIMNKQYQQLESRLDEILSRI--------AKETEEIKDLEEQLTEGQIAANEA---LKKDLEGVISGL 621
Cdd:TIGR02168 497 LQENLEGFSEGVKALLKNQSGLSGILGVLSELIsvdegyeaAIEAALGGRLQAVVVENLNAAKKAiafLKQNELGRVTFL 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 622 QeyLGTIKGQATQAQNecRKLRDEKETLLQRLTEVEQERDQLEIV-------------AMDAENMRKLEQSA-----LQA 683
Cdd:TIGR02168 577 P--LDSIKGTEIQGND--REILKNIEGFLGVAKDLVKFDPKLRKAlsyllggvlvvddLDNALELAKKLRPGyrivtLDG 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 684 ELEKERQALKNALGKAQFSE-EKEQENSELHAKLKHLQDDNNLLKQQLKD----FQNHLNHVVDGLVRPEEVAARVDELR 758
Cdd:TIGR02168 653 DLVRPGGVITGGSAKTNSSIlERRREIEELEEKIEELEEKIAELEKALAElrkeLEELEEELEQLRKELEELSRQISALR 732
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 759 RKL-KLGTGEMNIHSPSDVLGKSLADLQKQFSEILARSKWERDEAQVRERKLQEemalQQEKLATGQEEFRQACERALEA 837
Cdd:TIGR02168 733 KDLaRLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEE----LEAQIEQLKEELKALREALDEL 808
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 838 RM-----NFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKK-KKLEDAKSQEQvf 911
Cdd:TIGR02168 809 RAeltllNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESElEALLNERASLE-- 886
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 912 gldkelkklkkavatsdklatAELTIAKDQLKSLHGTVMKINQERAEELQEAERFSRKAAQAARDLTRAEAEIellQNLL 991
Cdd:TIGR02168 887 ---------------------EALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRI---DNLQ 942
|
810 820 830 840
....*....|....*....|....*....|....*....|....*..
gi 2217375254 992 RQKGEQFRLEMEktGVGTGANSQVLEIEKLNETMERQRTEIARLQNV 1038
Cdd:TIGR02168 943 ERLSEEYSLTLE--EAEALENKIEDDEEEARRRLKRLENKIKELGPV 987
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
96-280 |
4.75e-11 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 67.27 E-value: 4.75e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 96 NLALIKSLNLSlskdgGKKFKYI-ENLEKCVKLEVLNLSYNLIGKIEKLDKLLKLRELNLSYNKISKIEGIENMCNLQKL 174
Cdd:COG4886 203 NLTNLEELDLS-----GNQLTDLpEPLANLTNLETLDLSNNQLTDLPELGNLTNLEELDLSNNQLTDLPPLANLTNLKTL 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 175 NLAGNEIEHIPVWLGKKLKSLRVLNLKGNKISSLQDISKLKPLQDLISLILVENPVVTLPHYLQFTIFHLRSLESLEGQP 254
Cdd:COG4886 278 DLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLN 357
|
170 180
....*....|....*....|....*.
gi 2217375254 255 VTTQDRQEAFERFSLEEVERLERDLE 280
Cdd:COG4886 358 LLSLLLTLLLTLGLLGLLEATLLTLA 383
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1265-2094 |
8.78e-11 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 67.69 E-value: 8.78e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1265 EVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEV------------EELHRTVQKRQQQK 1332
Cdd:pfam02463 171 KKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEyllyldylklneERIDLLQELLRDEQ 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1333 DFIDGNVESLMTELEI-EKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSL 1411
Cdd:pfam02463 251 EEIESSKQEIEKEEEKlAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKEL 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1412 LQTESDAEELERRAQE----TAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEE 1487
Cdd:pfam02463 331 KKEKEEIEELEKELKEleikREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLL 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1488 LQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQE 1567
Cdd:pfam02463 411 LELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLL 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1568 ALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRqmskHKTELKNILDMLQ 1647
Cdd:pfam02463 491 SRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEV----SATADEVEERQKL 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1648 LENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLS 1727
Cdd:pfam02463 567 VRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKES 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1728 KEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAV 1807
Cdd:pfam02463 647 GLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADR 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1808 NSLQEELANVQdhLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQ 1887
Cdd:pfam02463 727 VQEAQDKINEE--LKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELR 804
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1888 EMMFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQ 1967
Cdd:pfam02463 805 ALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKL 884
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1968 LSEREQQLVEKSGELLALQKEadsmradfsLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSERDSSLLS 2047
Cdd:pfam02463 885 KDELESKEEKEKEEKKELEEE---------SQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNK 955
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....
gi 2217375254 2048 KEQKQENSCIQKEMATIELV-------AQDNHERARRLMKELNQMQYEYTELKK 2094
Cdd:pfam02463 956 EEEEERNKRLLLAKEELGKVnlmaieeFEEKEERYNKDELEKERLEEEKKKLIR 1009
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1262-2120 |
1.35e-10 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 66.99 E-value: 1.35e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1262 LENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHH---NIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGN 1338
Cdd:TIGR00606 212 LKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNrlkEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELK 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1339 VESLM--TELEIEKSLKHHEDIVDEIE----CIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFT--DAKRS 1410
Cdd:TIGR00606 292 MEKVFqgTDEQLNDLYHNHQRTVREKErelvDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRarDSLIQ 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1411 LLQTESDAEELER-----RAQETAVNLVKADQQlRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLT 1485
Cdd:TIGR00606 372 SLATRLELDGFERgpfseRQIKNFHTLVIERQE-DEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1486 EELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRaELEKLKSQVTSQQQEMAVLdrqlghkkeelhllqgSMVQAKADL 1565
Cdd:TIGR00606 451 KKQEELKFVIKELQQLEGSSDRILELDQELRKAER-ELSKAEKNSLTETLKKEVK----------------SLQNEKADL 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1566 QEALRlGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDM 1645
Cdd:TIGR00606 514 DRKLR-KLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDR 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1646 LQLENHELQGLKLQHDQRVSELEKTQvAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVEC 1725
Cdd:TIGR00606 593 LAKLNKELASLEQNKNHINNELESKE-EQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQ 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1726 LSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKRE 1805
Cdd:TIGR00606 672 LTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRN 751
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1806 AVNSLQEELANVQDHLnlakqdllhttkhqdvllSEQTRLQKDISEWANRFEDCQKEEETKQQqlqvLQNEIEENKLKLV 1885
Cdd:TIGR00606 752 KLQKVNRDIQRLKNDI------------------EEQETLLGTIMPEEESAKVCLTDVTIMER----FQMELKDVERKIA 809
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1886 QQEmmfqrlqkereseeSKLETSKVTLKEQQhqLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTK 1965
Cdd:TIGR00606 810 QQA--------------AKLQGSDLDRTVQQ--VNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEK 873
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1966 RQLSEREQQLVEKSGELLALQKEADSMradfsllrnqfLTERKKAEKQVASLKEALKiQRSQLEKNLLTINEDSERDSSL 2045
Cdd:TIGR00606 874 LQIGTNLQRRQQFEEQLVELSTEVQSL-----------IREIKDAKEQDSPLETFLE-KDQQEKEELISSKETSNKKAQD 941
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217375254 2046 LSKEQKQENSCIQKEMATIELVAQDNHERarrlmkelnQMQYEYTELKKQMANQKDLERRQMEISDAMRTLKSEV 2120
Cdd:TIGR00606 942 KVNDIKEKVKNIHGYMKDIENKIQDGKDD---------YLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDI 1007
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1714-2042 |
5.38e-10 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 64.92 E-value: 5.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1714 AESRALQScVECLSKEKEDLQEKCDIWEKKLAQT-KRVLAAAEENSKME--QSNLEKLELN-----------VRKLQQEL 1779
Cdd:PLN02939 150 ARLQALED-LEKILTEKEALQGKINILEMRLSETdARIKLAAQEKIHVEilEEQLEKLRNEllirgateglcVHSLSKEL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1780 DQLNRDKLSLHNDISAMQQQLQEKREAVNSLqeelanvqdhLNLAKQDLLHTTKHQDvLLSEQTRLQKDISEWANRFEDC 1859
Cdd:PLN02939 229 DVLKEENMLLKDDIQFLKAELIEVAETEERV----------FKLEKERSLLDASLRE-LESKFIVAQEDVSKLSPLQYDC 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1860 QKEE-ETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEE----SKLETSKVTLKEQQHQLEKELTDQKSKldQVL 1934
Cdd:PLN02939 298 WWEKvENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKeanvSKFSSYKVELLQQKLKLLEERLQASDH--EIH 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1935 SKVLAAEERVRTLQeeerwcESLEKTLSQTKRQlsereqqlveksgellALQKEADSMRADF----SLLRNQFLTERKKA 2010
Cdd:PLN02939 376 SYIQLYQESIKEFQ------DTLSKLKEESKKR----------------SLEHPADDMPSEFwsriLLLIDGWLLEKKIS 433
|
330 340 350
....*....|....*....|....*....|..
gi 2217375254 2011 EKQVASLKEALKIQRSQLEKNLLTINEDSERD 2042
Cdd:PLN02939 434 NNDAKLLREMVWKRDGRIREAYLSCKGKNERE 465
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1728-2163 |
6.27e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 64.68 E-value: 6.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1728 KEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNV---RKLQQELDQLNRDKLSLHNDISAMQQQLQEKR 1804
Cdd:PRK02224 199 KEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLeehEERREELETLEAEIEDLRETIAETEREREELA 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1805 EAVNSLQEELANVQDHLNlakqDLLHTTKHQDvllSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKL 1884
Cdd:PRK02224 279 EEVRDLRERLEELEEERD----DLLAEAGLDD---ADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDA 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1885 VQQEMMFQRLQKERESEESKLETSKVTL---KEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTL 1961
Cdd:PRK02224 352 DDLEERAEELREEAAELESELEEAREAVedrREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAEL 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1962 SQTKRQLSEReqqlVEKSGELLAL-------QKEADSMRADFsllrnqfLTERKKAEKQVASLKEALKIQRSQLEKNLLT 2034
Cdd:PRK02224 432 EATLRTARER----VEEAEALLEAgkcpecgQPVEGSPHVET-------IEEDRERVEELEAELEDLEEEVEEVEERLER 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2035 INEDSERDSSLLSKEQKQENscIQKEMATIELVAQDNHERARRLMKELNQMQYEYTELKKQMANQKDLERRQMEISDAMR 2114
Cdd:PRK02224 501 AEDLVEAEDRIERLEERRED--LEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELN 578
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 2217375254 2115 TLKSEVKDEIrtslknlnqflpELPADLEAILERNENLEGELESLKENL 2163
Cdd:PRK02224 579 SKLAELKERI------------ESLERIRTLLAAIADAEDEIERLREKR 615
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
641-1021 |
6.87e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.57 E-value: 6.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 641 KLRDEKETLLQRLTEVEQERDQLEIVAmdAENMRKLEQSALQAELEKERQALKnalgkaqfSEEKEQENSELHAKLKHLQ 720
Cdd:COG1196 169 KYKERKEEAERKLEATEENLERLEDIL--GELERQLEPLERQAEKAERYRELK--------EELKELEAELLLLKLRELE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 721 DDNNLLKQQLKDFQNHLNHVVDGLvrpEEVAARVDELRRKLklgtgemnihspsDVLGKSLADLQKQFSEILAR-SKWER 799
Cdd:COG1196 239 AELEELEAELEELEAELEELEAEL---AELEAELEELRLEL-------------EELELELEEAQAEEYELLAElARLEQ 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 800 DEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEARMNFDKRQHEARIQQMENEIHYLQENLKsmEEIQGLTDLQLQ 879
Cdd:COG1196 303 DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL--EAEAELAEAEEE 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 880 EADEEKERILAQLRELEKKKKLEDAKSQEQvfgldkELKKLKKAVATSDKLATAELTIAKDQLKSLHGTVMKINQERAEE 959
Cdd:COG1196 381 LEELAEELLEALRAAAELAAQLEELEEAEE------ALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217375254 960 LQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQKGEQFRLEMEKTGVGTGANSQVLEIEKL 1021
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLL 516
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
406-1017 |
7.36e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 64.78 E-value: 7.36e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 406 DSAQAVQIKKMEPDEQLRNDHMNLRGHTPLDTQLEDKEKKISAAQTRLSElhdEIEKAEQqiLRATEEFKQLEEAiqLKK 485
Cdd:PTZ00121 1238 DAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAE---EKKKADE--AKKAEEKKKADEA--KKK 1310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 486 ISEAGK-DLLYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIK--DLQIAIDSLDSKDPKHSHMKAQKSGKE- 561
Cdd:PTZ00121 1311 AEEAKKaDEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEaaEEKAEAAEKKKEEAKKKADAAKKKAEEk 1390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 562 QQLDIMNKQYQQLESRLDEILSRIA--KETEEIKDLEEQLTEgqiaANEALKKDLEGVISglqEYLGTIKGQATQAQNEC 639
Cdd:PTZ00121 1391 KKADEAKKKAEEDKKKADELKKAAAakKKADEAKKKAEEKKK----ADEAKKKAEEAKKA---DEAKKKAEEAKKAEEAK 1463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 640 RKlRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKLEQSALQAELEKERQALKNALGKAQFSEEKEQENSELHAKLKHL 719
Cdd:PTZ00121 1464 KK-AEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKA 1542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 720 QDDNNllkqqlkdfqnhlnhvVDGLVRPEEVaaRVDELRRKLKLGTGEMNIHSPSDVLGKSLADLQKQFSEILARSKWER 799
Cdd:PTZ00121 1543 EEKKK----------------ADELKKAEEL--KKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEE 1604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 800 DEAQVRERKLQEEMALQQEKLATGQEEfRQACERALEARMNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQ 879
Cdd:PTZ00121 1605 KKMKAEEAKKAEEAKIKAEELKKAEEE-KKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKA 1683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 880 EADEEKerilaqlRELEKKKKLEDAKSQEQVFGLDKELKKLKKAVATSDKLATAELTIAKDQLKSlhgtvmkiNQERAEE 959
Cdd:PTZ00121 1684 EEDEKK-------AAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE--------DKKKAEE 1748
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217375254 960 LQEAERFSRKAAQAARDLTRAEAEIE-----LLQNLLRQKGEQFRLEMEKTGVGTGANSQVLE 1017
Cdd:PTZ00121 1749 AKKDEEEKKKIAHLKKEEEKKAEEIRkekeaVIEEELDEEDEKRRMEVDKKIKDIFDNFANII 1811
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1741-1974 |
7.79e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 63.24 E-value: 7.79e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1741 EKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDH 1820
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1821 LN--LAKQDLLHTTKHQDVLLSeqtrlQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEEnklklvqqemmFQRLQKER 1898
Cdd:COG4942 106 LAelLRALYRLGRQPPLALLLS-----PEDFLDAVRRLQYLKYLAPARREQAEELRADLAE-----------LAALRAEL 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217375254 1899 ESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEErwcESLEKTLSQTKRQLSEREQQ 1974
Cdd:COG4942 170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEA---EELEALIARLEAEAAAAAER 242
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1257-1851 |
1.06e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 1.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1257 PEHHNLENEVSRLEDIMQHLKSKKR--EERWMRASKRQSEKEMEELHHN--IDDLLQEKKSLECEVEELH---RTVQKRQ 1329
Cdd:TIGR02168 351 EELESLEAELEELEAELEELESRLEelEEQLETLRSKVAQLELQIASLNneIERLEARLERLEDRRERLQqeiEELLKKL 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1330 QQKDFIDGNVESLMTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTkEKTKNAVEKFTDAKR 1409
Cdd:TIGR02168 431 EEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL-ERLQENLEGFSEGVK 509
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1410 SLLQTESD--------AEELERRAQ-ETAVNLVKAD--QQLRSLQADAKDLEQHKIKQEEI---------------LKEI 1463
Cdd:TIGR02168 510 ALLKNQSGlsgilgvlSELISVDEGyEAAIEAALGGrlQAVVVENLNAAKKAIAFLKQNELgrvtflpldsikgteIQGN 589
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1464 NKIVAAKDSDFQCLSKKKEKLTEELQK--------------LQKDIEMAERNEDHHLQVLKESEVL-------------- 1515
Cdd:TIGR02168 590 DREILKNIEGFLGVAKDLVKFDPKLRKalsyllggvlvvddLDNALELAKKLRPGYRIVTLDGDLVrpggvitggsaktn 669
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1516 --LQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEEL 1593
Cdd:TIGR02168 670 ssILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1594 SFQKGELNVQISERKTQLTlikqeiekeeenlqvvlrQMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQVA 1673
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEE------------------RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE 811
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1674 VLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAEsralqscVECLSKEKEDLQEKCDIWEKKLAQTKRVLAA 1753
Cdd:TIGR02168 812 LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED-------IESLAAEIEELEELIEELESELEALLNERAS 884
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1754 AEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELAN-VQDHLNLAKQDLLHTT 1832
Cdd:TIGR02168 885 LEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEeYSLTLEEAEALENKIE 964
|
650
....*....|....*....
gi 2217375254 1833 KHQDVLLSEQTRLQKDISE 1851
Cdd:TIGR02168 965 DDEEEARRRLKRLENKIKE 983
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1741-2121 |
1.70e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.55 E-value: 1.70e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1741 EKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNR------------------DKLSLHNDISAMQQQLQE 1802
Cdd:TIGR02169 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERyqallkekreyegyellkEKEALERQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1803 KREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLS-EQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIeenk 1881
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEeEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERL---- 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1882 lklvqqemmfQRLQKERESEESKLEtskvtlkeqqhQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEerwCESLEKTL 1961
Cdd:TIGR02169 325 ----------AKLEAEIDKLLAEIE-----------ELEREIEEERKRRDKLTEEYAELKEELEDLRAE---LEEVDKEF 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1962 SQTKRQLSEREQQLVEKSGELLALQKEADSMradfsllrnqfLTERKKAEKQVASLKEALKIQRSQLEKnlltiNEDSER 2041
Cdd:TIGR02169 381 AETRDELKDYREKLEKLKREINELKRELDRL-----------QEELQRLSEELADLNAAIAGIEAKINE-----LEEEKE 444
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2042 DSSLLSKEQKQENSCIQKEMATIELVAQDNHERARRLMKELNQMQYEYTELKKQmanQKDLERRQMEISDAMRTLKSEVK 2121
Cdd:TIGR02169 445 DKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQ---ARASEERVRGGRAVEEVLKASIQ 521
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1356-1936 |
2.76e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 62.73 E-value: 2.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1356 EDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKA 1435
Cdd:TIGR04523 36 KQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKND 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1436 DQQLRSLQADAKDLEQHKIKQEEILKEIN-------KIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDH---- 1504
Cdd:TIGR04523 116 KEQKNKLEVELNKLEKQKKENKKNIDKFLteikkkeKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKiknk 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1505 ---------HLQVLKESEVLLQAKRAELEK----LKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEA--- 1568
Cdd:TIGR04523 196 llklelllsNLKKKIQKNKSLESQISELKKqnnqLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKqke 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1569 LRLGETEVTEKCNHIREVKSLLEELSFQK-----GELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKN-- 1641
Cdd:TIGR04523 276 LEQNNKKIKELEKQLNQLKSEISDLNNQKeqdwnKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNse 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1642 -----ILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAES 1716
Cdd:TIGR04523 356 senseKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETI 435
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1717 RALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAM 1796
Cdd:TIGR04523 436 IKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDL 515
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1797 QQQLQEKREAVNSLQEELANVQDHLNLAKQDL--LHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQ 1874
Cdd:TIGR04523 516 TKKISSLKEKIEKLESEKKEKESKISDLEDELnkDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKE 595
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217375254 1875 NEIEENKLKLVQQEMMFQRLQKERES---EESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSK 1936
Cdd:TIGR04523 596 KEKKDLIKEIEEKEKKISSLEKELEKakkENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNK 660
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
460-1065 |
5.71e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.62 E-value: 5.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 460 IEKAEQQILRATEEFKQLEEaiQLKKIseagkDLLYKQLSGRLQLVNKLRQEALD-LELQMEKQKQEIAGKQKEIKDLQI 538
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEE--NIERL-----DLIIDEKRQQLERLRREREKAERyQALLKEKREYEGYELLKEKEALER 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 539 AIDSLDskdpkhshmkAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDL--EEQLT-EGQIAANEALKKDLE 615
Cdd:TIGR02169 238 QKEAIE----------RQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgeEEQLRvKEKIGELEAEIASLE 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 616 GVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQL-EIVAMDAENMRKLEQSAlqAELEKERQALKN 694
Cdd:TIGR02169 308 RSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLtEEYAELKEELEDLRAEL--EEVDKEFAETRD 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 695 ALGKAQfsEEKEQ---ENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLV----RPEEVAARVDELRRKLKLGTGE 767
Cdd:TIGR02169 386 ELKDYR--EKLEKlkrEINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINeleeEKEDKALEIKKQEWKLEQLAAD 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 768 M--------NIHSPSDVLGKSLADLQKQFSEILARSKWERDEaqVRERKLQEEMALQQEKLATGQ--------EEFRQAC 831
Cdd:TIGR02169 464 LskyeqelyDLKEEYDRVEKELSKLQRELAEAEAQARASEER--VRGGRAVEEVLKASIQGVHGTvaqlgsvgERYATAI 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 832 ERALEARMNFDKRQHEA-----------------------RIQQMENEIHYLQE--------NLKSMEE------IQGLT 874
Cdd:TIGR02169 542 EVAAGNRLNNVVVEDDAvakeaiellkrrkagratflplnKMRDERRDLSILSEdgvigfavDLVEFDPkyepafKYVFG 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 875 DLQLQEADEEKERILAQLRELEKKKKLEDaKSQEQVFGLDKELKKLKKAVATSDKLATAeltiaKDQLKSLHGTVMKINQ 954
Cdd:TIGR02169 622 DTLVVEDIEAARRLMGKYRMVTLEGELFE-KSGAMTGGSRAPRGGILFSRSEPAELQRL-----RERLEGLKRELSSLQS 695
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 955 ERAEELQEAERFSRKAAQAARDLTRAEAEIELL---QNLLRQKGEQFRLEMEKTGVGTGANSQvlEIEKLNETMERQRTE 1031
Cdd:TIGR02169 696 ELRRIENRLDELSQELSDASRKIGEIEKEIEQLeqeEEKLKERLEELEEDLSSLEQEIENVKS--ELKELEARIEELEED 773
|
650 660 670
....*....|....*....|....*....|....*
gi 2217375254 1032 IARLQNVL-DLTGSDNKGGFENVLEEIAELRREVS 1065
Cdd:TIGR02169 774 LHKLEEALnDLEARLSHSRIPEIQAELSKLEEEVS 808
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1298-2162 |
8.51e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 61.14 E-value: 8.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1298 EELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDgnveslmteleiekslkhheDIVDEIECIEKTLLKRRSELR 1377
Cdd:pfam02463 152 PERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELII--------------------DLEELKLQELKLKEQAKKALE 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1378 EADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQE 1457
Cdd:pfam02463 212 YYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLL 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1458 EILKEINKIVAAK-DSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQ----VTS 1532
Cdd:pfam02463 292 AKEEEELKSELLKlERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLqeklEQL 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1533 QQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSfQKGELNVQISERKTQLT 1612
Cdd:pfam02463 372 EEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILE-EEEESIELKQGKLTEEK 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1613 LIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQK 1692
Cdd:pfam02463 451 EELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGR 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1693 GEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNV 1772
Cdd:pfam02463 531 LGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDK 610
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1773 RKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQE----ELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKD 1848
Cdd:pfam02463 611 ATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKgvslEEGLAEKSEVKASLSELTKELLEIQELQEKAESELA 690
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1849 ISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEM----MFQRLQKERESEESKLETSKVTLKEQQHQLEKELT 1924
Cdd:pfam02463 691 KEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQdkinEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELS 770
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1925 DQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFL 2004
Cdd:pfam02463 771 LKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEK 850
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2005 TERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSERDSSLLSKEQKQENSCIQKEMATIELVAQDNHERARRLMKELNQ 2084
Cdd:pfam02463 851 LAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEIL 930
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217375254 2085 MQYEYTELKKQMANQKDLERRQMEISDAMRTLKSEVKDEIRTSLKNLNQFlpelpADLEAILERNENLEGELESLKEN 2162
Cdd:pfam02463 931 LKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAI-----EEFEEKEERYNKDELEKERLEEE 1003
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
438-841 |
1.09e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.85 E-value: 1.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 438 QLEDKEKKISAAQTRLSELHDEIEKAEQQILRAtEEFKqleeAIQLKKISEAGKDLLYKQLSGRLQLVNKLRQEAlDLEL 517
Cdd:TIGR02169 178 ELEEVEENIERLDLIIDEKRQQLERLRREREKA-ERYQ----ALLKEKREYEGYELLKEKEALERQKEAIERQLA-SLEE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 518 QMEKQKQEIAGKQKEIKDLQIAIDSLDSKdpkhshmkAQKSGKEQQLDImNKQYQQLESRLDEILSRIAKETEEIKDLEE 597
Cdd:TIGR02169 252 ELEKLTEEISELEKRLEEIEQLLEELNKK--------IKDLGEEEQLRV-KEKIGELEAEIASLERSIAEKERELEDAEE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 598 QLTEGqiaanEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLeivamdaenmrKLE 677
Cdd:TIGR02169 323 RLAKL-----EAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAET-----------RDE 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 678 QSALQAELEK---ERQALKNALGKAQF-SEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLvrpEEVAAR 753
Cdd:TIGR02169 387 LKDYREKLEKlkrEINELKRELDRLQEeLQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKL---EQLAAD 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 754 VDELRRKLKlgtgemNIHSPSDVLGKSLADLQKQFSEILARSKWERDEaqVRERKLQEEMALQQEKLATGQ--------E 825
Cdd:TIGR02169 464 LSKYEQELY------DLKEEYDRVEKELSKLQRELAEAEAQARASEER--VRGGRAVEEVLKASIQGVHGTvaqlgsvgE 535
|
410
....*....|....*.
gi 2217375254 826 EFRQACERALEARMNF 841
Cdd:TIGR02169 536 RYATAIEVAAGNRLNN 551
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
521-900 |
1.34e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.47 E-value: 1.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 521 KQKQEIAGKQKEIKDLQIAIDSLDSKdpkHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQL- 599
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSE---LRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLs 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 600 -TEGQIAANEALKKDLEGVISGLQEYLGTIkgQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAEnmRKLEQ 678
Cdd:TIGR02169 748 sLEQEIENVKSELKELEARIEELEEDLHKL--EEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIE--QKLNR 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 679 SALQAE-LEKERQalknalgkaqfseEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLnhvvdglvrpEEVAARVDEL 757
Cdd:TIGR02169 824 LTLEKEyLEKEIQ-------------ELQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL----------EELEAALRDL 880
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 758 RRKLKlgtgemNIHSPSDVLGKSLADLQKQFSEIlarsKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACEralEA 837
Cdd:TIGR02169 881 ESRLG------DLKKERDELEAQLRELERKIEEL----EAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEE---IP 947
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 838 RMNFDKRQHEARIQQMENEIHYLQE-NLKSMEE----IQGLTDLQLQEA--DEEKERILAQLRELEKKKK 900
Cdd:TIGR02169 948 EEELSLEDVQAELQRVEEEIRALEPvNMLAIQEyeevLKRLDELKEKRAklEEERKAILERIEEYEKKKR 1017
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1277-1978 |
1.35e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 60.37 E-value: 1.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1277 KSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESLMTELEIEKSLKHHE 1356
Cdd:TIGR00618 187 AKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLR 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1357 DIVDEIECIEKTLLKRRSEL---READRLLAEAESelsctkektknavekftdakrsLLQTESDAEELERRAQETAVNLV 1433
Cdd:TIGR00618 267 ARIEELRAQEAVLEETQERInraRKAAPLAAHIKA----------------------VTQIEQQAQRIHTELQSKMRSRA 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1434 KADQQLRSLQADAKDLEQHKIKQEEILKE--INKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEmaernedhhlqVLKE 1511
Cdd:TIGR00618 325 KLLMKRAAHVKQQSSIEEQRRLLQTLHSQeiHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKT-----------TLTQ 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1512 SEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALrlgeTEVTEKCNHIREVKSLLE 1591
Cdd:TIGR00618 394 KLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTA----QCEKLEKIHLQESAQSLK 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1592 ELSFQKGelnvqiserktqltlikqeiekeeeNLQVVLRQMSKHKTELKNILDMLQLENHELQGLKL---QHDQRVSELE 1668
Cdd:TIGR00618 470 EREQQLQ-------------------------TKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIhpnPARQDIDNPG 524
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1669 KTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEkcdiwekklaQTK 1748
Cdd:TIGR00618 525 PLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQN----------ITV 594
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1749 RVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLnrdklslhnDISAMQQQLQEKREavnslQEELANVQDHLNLAKQDL 1828
Cdd:TIGR00618 595 RLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQ---------DVRLHLQQCSQELA-----LKLTALHALQLTLTQERV 660
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1829 LHT---TKHQDVLLSEQTRLQKDISEWANRFEDCQKEE-ETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESK 1904
Cdd:TIGR00618 661 REHalsIRVLPKELLASRQLALQKMQSEKEQLTYWKEMlAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDA 740
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217375254 1905 LETSkvtLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEK 1978
Cdd:TIGR00618 741 LNQS---LKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQE 811
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
495-898 |
1.84e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 59.78 E-value: 1.84e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 495 YKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHMKAQKSgKEQQLDIMNKQYQQL 574
Cdd:COG4717 73 LKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEA-LEAELAELPERLEEL 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 575 ESRLDEILSRIaketEEIKDLEEQLTEGQIAANEALKKDLEGVisglQEYLGTIKGQATQAQNECRKLRDEKETLLQRLT 654
Cdd:COG4717 152 EERLEELRELE----EELEELEAELAELQEELEELLEQLSLAT----EEELQDLAEELEELQQRLAELEEELEEAQEELE 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 655 EVEQERDQLEIVAMDAENMRKLEQ--------------SALQAELEKERQALKNAL--------------GKAQFSEEKE 706
Cdd:COG4717 224 ELEEELEQLENELEAAALEERLKEarlllliaaallalLGLGGSLLSLILTIAGVLflvlgllallflllAREKASLGKE 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 707 QENSELHAKLKHLQDDNnlLKQQLKDFQNHLNHVVDGLVRPEEVAARVDELRRKLKLGTGEMNIHspsdvlgkslaDLQK 786
Cdd:COG4717 304 AEELQALPALEELEEEE--LEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLE-----------ELEQ 370
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 787 QFSEILARSKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEARMNFDKRQHEARIQQMENEIHYLQENLKS 866
Cdd:COG4717 371 EIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEE 450
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 2217375254 867 M-EEIQGL--------TDLQLQEADEEKERILAQLRELEKK 898
Cdd:COG4717 451 LrEELAELeaeleqleEDGELAELLQELEELKAELRELAEE 491
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1521-1881 |
2.61e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.70 E-value: 2.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1521 AELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRLGETEVTEkcnHIREVKSLLEELSFQKGEL 1600
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYE---LLKEKEALERQKEAIERQL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1601 NvQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTEL-KNILDMLQLENHELQGlklqhdqrvsELEKTQVAVLEEKL 1679
Cdd:TIGR02169 247 A-SLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEA----------EIASLERSIAEKER 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1680 ELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSK 1759
Cdd:TIGR02169 316 ELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1760 MEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLlhttkhqDVLL 1839
Cdd:TIGR02169 396 KLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADL-------SKYE 468
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 2217375254 1840 SEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENK 1881
Cdd:TIGR02169 469 QELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGR 510
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
781-1567 |
3.31e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.30 E-value: 3.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 781 LADLQKQFSEILARSKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEA------------RMNFDKRQHEA 848
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELqkelyalaneisRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 849 RIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKKKLEDAKSQEQVFGLDKELKKLKKAVATSD 928
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 929 KL------ATAELTIAKDQLKSLHGTVMKINQERAEELQEAERFSRKAAQaaRDLTRAEAEIELLQNLLRQKGEQFRLEM 1002
Cdd:TIGR02168 390 QLelqiasLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQ--AELEELEEELEELQEELERLEEALEELR 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1003 EktgvgtgansqvlEIEKLNETMERQRTEIARLQNVLDLTGSDnKGGFENVLEEIAELRREVSYQNDYISSMADPFKRRG 1082
Cdd:TIGR02168 468 E-------------ELEEAEQALDAAERELAQLQARLDSLERL-QENLEGFSEGVKALLKNQSGLSGILGVLSELISVDE 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1083 YWyfmppppsskvsshSSQATKDSGVGLKYSAStpvrkprPGQQDGKEG--SQPPPASGYWVYSPIRSGLHKLFPSRDAD 1160
Cdd:TIGR02168 534 GY--------------EAAIEAALGGRLQAVVV-------ENLNAAKKAiaFLKQNELGRVTFLPLDSIKGTEIQGNDRE 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1161 S--GGDSQEESELDDQEEPPFVPPP-GYMMYTVLPDGSpVPQGMALYAPPPPLPNNSRP----LTPGTVVYGpppagapm 1233
Cdd:TIGR02168 593 IlkNIEGFLGVAKDLVKFDPKLRKAlSYLLGGVLVVDD-LDNALELAKKLRPGYRIVTLdgdlVRPGGVITG-------- 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1234 vyGPPPPNFSIpfipmgvlhcnvpehHNLENEVSRLedimqhlkskkreerwmraskrqsEKEMEELHHNIDDLLQEKKS 1313
Cdd:TIGR02168 664 --GSAKTNSSI---------------LERRREIEEL------------------------EEKIEELEEKIAELEKALAE 702
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1314 LECEVEELhrTVQKRQQQKDFIDGNVESLMTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCT 1393
Cdd:TIGR02168 703 LRKELEEL--EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA 780
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1394 KEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVaakdsd 1473
Cdd:TIGR02168 781 EAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI------ 854
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1474 fqclskkkEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHL 1553
Cdd:TIGR02168 855 --------ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQ 926
|
810
....*....|....
gi 2217375254 1554 LQGSMVQAKADLQE 1567
Cdd:TIGR02168 927 LELRLEGLEVRIDN 940
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
438-660 |
4.06e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.85 E-value: 4.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 438 QLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEeaiqlKKISEAGKDLlyKQLSGRLqlvNKLRQEALDLEL 517
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALE-----RRIAALARRI--RALEQEL---AALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 518 QMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHMKAQKSgkeQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEE 597
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDF---LDAVRRLQYLKYLAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217375254 598 QLT------EGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQER 660
Cdd:COG4942 168 ELEaeraelEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1523-2173 |
4.25e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 58.98 E-value: 4.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1523 LEKLKSQVTSQQQEMAvlDRQLGHKKEELHLLQGSMvqakaDLQEALRLGETEVTEKCNHIREVKSLLEELsfqKGELNV 1602
Cdd:pfam15921 80 LEEYSHQVKDLQRRLN--ESNELHEKQKFYLRQSVI-----DLQTKLQEMQMERDAMADIRRRESQSQEDL---RNQLQN 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1603 QISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLqLENHELQGLKLQHDQRVSELEKTQVAvleeklelE 1682
Cdd:pfam15921 150 TVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSIL-VDFEEASGKKIYEHDSMSTMHFRSLG--------S 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1683 NLQQISQQQKGEIEWQKQLLERDKREIERMTAESralQSCVECLskekedLQEKCDIWEKKLAQTKRVLAAAEENSKMEQ 1762
Cdd:pfam15921 221 AISKILRELDTEISYLKGRIFPVEDQLEALKSES---QNKIELL------LQQHQDRIEQLISEHEVEITGLTEKASSAR 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1763 SNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQ-EKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSE 1841
Cdd:pfam15921 292 SQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRsELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQE 371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1842 QTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNE-------IEENKLKLVQQEMMFQRLQ---KERESE-ESKLETSKV 1910
Cdd:pfam15921 372 SGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRdtgnsitIDHLRRELDDRNMEVQRLEallKAMKSEcQGQMERQMA 451
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1911 TLKEQQHQLEK--ELTDQKSKLDQVLSKVlaaeerVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEKSGELLALQKe 1988
Cdd:pfam15921 452 AIQGKNESLEKvsSLTAQLESTKEMLRKV------VEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRS- 524
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1989 adsmRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSERDSSLLSKEQKQENScIQKEMATIElva 2068
Cdd:pfam15921 525 ----RVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGA-MQVEKAQLE--- 596
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2069 qdnherarrlmKELNQMQYEYTELKKqMANQKDLERRQME--ISD-----------------AMRTLKSEvKDEIRTSLK 2129
Cdd:pfam15921 597 -----------KEINDRRLELQEFKI-LKDKKDAKIRELEarVSDlelekvklvnagserlrAVKDIKQE-RDQLLNEVK 663
|
650 660 670 680
....*....|....*....|....*....|....*....|....
gi 2217375254 2130 NLNQFLPELPADLEAILERNENLEGELESLKENLPFTMNEGPFE 2173
Cdd:pfam15921 664 TSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSE 707
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
510-731 |
4.40e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.85 E-value: 4.40e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 510 QEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLdskdpkhshmKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKET 589
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKAL----------LKQLAALERRIAALARRIRALEQELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 590 EEIKDLEEQLtegqiaanEALKKDLEGVI-----SGLQEYLGTIKGQ--ATQAQNECRKLRDEKETLLQRLTEVEQERDQ 662
Cdd:COG4942 90 KEIAELRAEL--------EAQKEELAELLralyrLGRQPPLALLLSPedFLDAVRRLQYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 663 LEIVAMDAENMRKlEQSALQAELEKERQALKNALG-KAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLK 731
Cdd:COG4942 162 LAALRAELEAERA-ELEALLAELEEERAALEALKAeRQKLLARLEKELAELAAELAELQQEAEELEALIA 230
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1750-1991 |
5.99e-08 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 57.53 E-value: 5.99e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1750 VLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLL 1829
Cdd:COG3883 10 TPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1830 HTTKHQ----------DVLLSeqtrlQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKlklvqqemmfqRLQKERE 1899
Cdd:COG3883 90 ERARALyrsggsvsylDVLLG-----SESFSDFLDRLSALSKIADADADLLEELKADKAELE-----------AKKAELE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1900 SEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEKS 1979
Cdd:COG3883 154 AKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAA 233
|
250
....*....|..
gi 2217375254 1980 GELLALQKEADS 1991
Cdd:COG3883 234 AAAAAAAAAAAS 245
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1402-2208 |
8.87e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.77 E-value: 8.87e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1402 EKFTDAKRSLLQTESDAEELERRAQETAVNLVK-ADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAK---DSDFQCL 1477
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERlRREREKAERYQALLKEKREYEGYELLKEKEALERQKeaiERQLASL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1478 SKKKEKLTEELQKLQKDIEMAERN-EDHHLQVLKESEVLLQAKRAELEKLKSQVTSqqqemavLDRQLGHKKEELHllqg 1556
Cdd:TIGR02169 250 EEELEKLTEEISELEKRLEEIEQLlEELNKKIKDLGEEEQLRVKEKIGELEAEIAS-------LERSIAEKERELE---- 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1557 smvqakaDLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHK 1636
Cdd:TIGR02169 319 -------DAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1637 TEL---KNILDMLQLENHELQGLKLQHDQRVSELEktqvavleeklelenlqqisQQQKGEIEWQKQLLERDKREIERMT 1713
Cdd:TIGR02169 392 EKLeklKREINELKRELDRLQEELQRLSEELADLN--------------------AAIAGIEAKINELEEEKEDKALEIK 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1714 AESRALQSCVECLSKEKE---DLQEKCDIWEKKLAQTKRVLAAAEEnskmEQSNLEKLELNVRKLQQELDQLNRDKLSLH 1790
Cdd:TIGR02169 452 KQEWKLEQLAADLSKYEQelyDLKEEYDRVEKELSKLQRELAEAEA----QARASEERVRGGRAVEEVLKASIQGVHGTV 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1791 NDISAMQQQLQEKRE--AVNSLQ----EELANVQDHLNLAKQ------DLLHTTKHQDVLLSEQTRLQKDISEWANRFED 1858
Cdd:TIGR02169 528 AQLGSVGERYATAIEvaAGNRLNnvvvEDDAVAKEAIELLKRrkagraTFLPLNKMRDERRDLSILSEDGVIGFAVDLVE 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1859 CQKEEETKQQQL---QVLQNEIEENKLKLVQQEMM----------------------FQRLQKERESEESKLETSKVTLK 1913
Cdd:TIGR02169 608 FDPKYEPAFKYVfgdTLVVEDIEAARRLMGKYRMVtlegelfeksgamtggsraprgGILFSRSEPAELQRLRERLEGLK 687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1914 EQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEErwcESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMR 1993
Cdd:TIGR02169 688 RELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEI---EQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELE 764
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1994 ADFSLLrnqflterkkaEKQVASLKEALkiqrsqleknlltinEDSERDsslLSKEQKQEnscIQKEMATIELVAQDNHE 2073
Cdd:TIGR02169 765 ARIEEL-----------EEDLHKLEEAL---------------NDLEAR---LSHSRIPE---IQAELSKLEEEVSRIEA 812
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2074 RARRLMKELNQMQYEYTELKKQMANqkdLERRQMEISDAMRTLKSEVkDEIRTSLKNLNQFLPELPADLEAILERNENLE 2153
Cdd:TIGR02169 813 RLREIEQKLNRLTLEKEYLEKEIQE---LQEQRIDLKEQIKSIEKEI-ENLNGKKEELEEELEELEAALRDLESRLGDLK 888
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*
gi 2217375254 2154 GELESLKENLpftmneGPFEEKLNfsqvhimdehwRGEALREKLRHREDRLKAQL 2208
Cdd:TIGR02169 889 KERDELEAQL------RELERKIE-----------ELEAQIEKKRKRLSELKAKL 926
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
423-1034 |
8.94e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.84 E-value: 8.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 423 RNDHMN-LRGHTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQ----LKKISEAGK-DLLYK 496
Cdd:PTZ00121 1062 AKAHVGqDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKkaedARKAEEARKaEDARK 1141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 497 QLSGRLQLVNKLRQEALDLElqmEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHmKAQKSGKEQQLDIMNKQYQQLES 576
Cdd:PTZ00121 1142 AEEARKAEDAKRVEIARKAE---DARKAEEARKAEDAKKAEAARKAEEVRKAEELR-KAEDARKAEAARKAEEERKAEEA 1217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 577 RLDEILSRI--AKETEEI-KDLEEQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRL 653
Cdd:PTZ00121 1218 RKAEDAKKAeaVKKAEEAkKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKK 1297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 654 TEVEQERDQLEIVAMDAENMRKLEQSALQAELEKE--RQALKNALGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLK 731
Cdd:PTZ00121 1298 AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADaaKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAK 1377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 732 DFQNHLNHVVDGLVRPEEVAARVDELRRKLKLGTGEMNIHSPSDVLGKSLADLQKqfSEILARSKWERDEAQvrERKLQE 811
Cdd:PTZ00121 1378 KKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK--ADEAKKKAEEAKKAD--EAKKKA 1453
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 812 EMALQQEKLATGQEEFRQACE---RALEARMNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTdlQLQEADE----E 884
Cdd:PTZ00121 1454 EEAKKAEEAKKKAEEAKKADEakkKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAE--EAKKADEakkaE 1531
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 885 KERILAQLRELEKKKKLEDAKSQEQVFGLDKELKKLKKAVATSDK-LATAELTIAKDQLKSLHGTVMKINQE----RAEE 959
Cdd:PTZ00121 1532 EAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKnMALRKAEEAKKAEEARIEEVMKLYEEekkmKAEE 1611
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217375254 960 LQEAERFSRKAAQaardlTRAEAEIELLQNLLRQKGEQFRLEMEKTGVGTGANSQVLEIEKLNETMERQRTEIAR 1034
Cdd:PTZ00121 1612 AKKAEEAKIKAEE-----LKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAK 1681
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1262-1916 |
9.16e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 57.82 E-value: 9.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1262 LENEVSRLEDIMQHLKSKKRE--ERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTV-----QKRQQQKDF 1334
Cdd:pfam15921 236 LKGRIFPVEDQLEALKSESQNkiELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLeiiqeQARNQNSMY 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1335 ID--GNVESLMTEL--EIEKSLKHHEDivdEIECIEKTLLKRRSELREA------------------DRLLAE---AESE 1389
Cdd:pfam15921 316 MRqlSDLESTVSQLrsELREAKRMYED---KIEELEKQLVLANSELTEArterdqfsqesgnlddqlQKLLADlhkREKE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1390 LSCTKEKTKNAVEKFTDAKRSL--LQTESDAEELERRAQETAVNLVKAD------QQLRSLQAdakdleqhkikQEEILK 1461
Cdd:pfam15921 393 LSLEKEQNKRLWDRDTGNSITIdhLRRELDDRNMEVQRLEALLKAMKSEcqgqmeRQMAAIQG-----------KNESLE 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1462 EINKIVAAKDSDFQCLskkkEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLd 1541
Cdd:pfam15921 462 KVSSLTAQLESTKEML----RKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHL- 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1542 rqlghKKEELHLLQgsmVQAKAdlqEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTlikqeieke 1621
Cdd:pfam15921 537 -----KNEGDHLRN---VQTEC---EALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLE--------- 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1622 eenlqvvlRQMSKHKTELKnildmlqlenhELQGLKLQHDQRVSELEKtqvavleeklelenlqQISQQQKGEIEWQKQL 1701
Cdd:pfam15921 597 --------KEINDRRLELQ-----------EFKILKDKKDAKIRELEA----------------RVSDLELEKVKLVNAG 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1702 LERdKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLaqtkrvlaaaEENSKMEQSNLEKLELNVRKLQQELDQ 1781
Cdd:pfam15921 642 SER-LRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNF----------RNKSEEMETTTNKLKMQLKSAQSELEQ 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1782 LNRDKLSLHND-------ISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWAN 1854
Cdd:pfam15921 711 TRNTLKSMEGSdghamkvAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAG 790
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217375254 1855 RFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRlqKERESEESKLETSkVTLKEQQ 1916
Cdd:pfam15921 791 ELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQR--QEQESVRLKLQHT-LDVKELQ 849
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
270-1081 |
9.99e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 57.67 E-value: 9.99e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 270 EEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSLKEEAMLQKQSCEELKSDLNTKNELLKQKTIELTRACQKQ 349
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQEL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 350 YELEQElafyKIDAKFEPLNYYPSEYAEIDKAPDEspyigKSRYKRNMFATESYIIDSAQAVQIKKMEPDEQLRNDHMNL 429
Cdd:pfam02463 246 LRDEQE----EIESSKQEIEKEEEKLAQVLKENKE-----EEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 430 RGHtplDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDLLYKQLSGRLQLVNKLR 509
Cdd:pfam02463 317 KES---EKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLK 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 510 QEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKhshmKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKET 589
Cdd:pfam02463 394 EEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILE----EEEESIELKQGKLTEEKEELEKQELKLLKDELELKK 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 590 EEIKDLEEQLTEGQIAANEALK-KDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAM 668
Cdd:pfam02463 470 SEDLLKETQLVKLQEQLELLLSrQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAV 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 669 DAENMRKLEQSALQAELEKERQALKNALGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPE 748
Cdd:pfam02463 550 IVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGIL 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 749 EVAARVDELRRKLKLGTGEMNIHSpSDVLGKSLADLQKQFSEILARSKWERDEAQVRERKLQEEMALQQEKLATGQEEFR 828
Cdd:pfam02463 630 KDTELTKLKESAKAKESGLRKGVS-LEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQRE 708
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 829 QACER--ALEARMNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQ-LRELEKKKKLEDAK 905
Cdd:pfam02463 709 KEELKklKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEkELAEEREKTEKLKV 788
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 906 SQEQVFGLDKELKKLKKAVATSDKLATAELTIAKDQLKSLHGTVMKINQERAEELQEAERFSRKAAQAARDLTRAEAEIE 985
Cdd:pfam02463 789 EEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEEL 868
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 986 LLQNLLRQKGEQFRLEMEKTGvgtGANSQVLEIEKLNETMERQRTEIARLQNVLDLTGSDNKGGFENVLEEIAELRREVS 1065
Cdd:pfam02463 869 LQELLLKEEELEEQKLKDELE---SKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEA 945
|
810
....*....|....*.
gi 2217375254 1066 YQNDYISSMADPFKRR 1081
Cdd:pfam02463 946 DEKEKEENNKEEEEER 961
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1295-2151 |
1.01e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.84 E-value: 1.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1295 KEMEEL--HHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESL----MTELEIEKSLKHHEDIVDEIECIEKT 1368
Cdd:PTZ00121 1027 EKIEELteYGNNDDVLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYkdfdFDAKEDNRADEATEEAFGKAEEAKKT 1106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1369 LLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSllqTESDAEELERRAQET-AVNLVKADQQLRSLQADAK 1447
Cdd:PTZ00121 1107 ETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKA---EDAKRVEIARKAEDArKAEEARKAEDAKKAEAARK 1183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1448 DLEQHKIKQEEILKEINKIVAAKDSDfqclskkKEKLTEELQKLQ--KDIEMAERNEdhhlQVLKESEvllQAKRAELEK 1525
Cdd:PTZ00121 1184 AEEVRKAEELRKAEDARKAEAARKAE-------EERKAEEARKAEdaKKAEAVKKAE----EAKKDAE---EAKKAEEER 1249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1526 LKSQVTSQQQEMAV--LDRQLGHKKEELHllQGSMVQAKADLQEALRLGETEVTEKCNHIR----------EVKSLLEEL 1593
Cdd:PTZ00121 1250 NNEEIRKFEEARMAhfARRQAAIKAEEAR--KADELKKAEEKKKADEAKKAEEKKKADEAKkkaeeakkadEAKKKAEEA 1327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1594 SFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMS---KHKTELKNILDMLQLENHE------LQGLKLQHDQRV 1664
Cdd:PTZ00121 1328 KKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEaaeKKKEEAKKKADAAKKKAEEkkkadeAKKKAEEDKKKA 1407
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1665 SELEKTQVAVLEEKLELENLQQI--SQQQKGEIEWQKQLLERDKREIERMTAES---RALQSCVECLSKEKEDLQEKCDI 1739
Cdd:PTZ00121 1408 DELKKAAAAKKKADEAKKKAEEKkkADEAKKKAEEAKKADEAKKKAEEAKKAEEakkKAEEAKKADEAKKKAEEAKKADE 1487
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1740 WEKKLAQTKRvlaAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQ----EELA 1815
Cdd:PTZ00121 1488 AKKKAEEAKK---KADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEElkkaEEKK 1564
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1816 NVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDI----SEWANRFEDCQKEEETKQQQLQVLQneiEENKLKLVQQEMMF 1891
Cdd:PTZ00121 1565 KAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMklyeEEKKMKAEEAKKAEEAKIKAEELKK---AEEEKKKVEQLKKK 1641
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1892 QRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSER 1971
Cdd:PTZ00121 1642 EAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEEL 1721
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1972 EQQLVEKSGELLALQKEADSmradfsllrnqfltERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSERDSSL---LSK 2048
Cdd:PTZ00121 1722 KKAEEENKIKAEEAKKEAEE--------------DKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIeeeLDE 1787
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2049 EQKQENSCIQKEMATIELVAQDNHERARRLMKELNQMQYEYTELKKQMANQKDLERRQMEISDAMRTLKSEVKDEIRTSL 2128
Cdd:PTZ00121 1788 EDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKE 1867
|
890 900
....*....|....*....|...
gi 2217375254 2129 KNLNQFLPELPADLEAILERNEN 2151
Cdd:PTZ00121 1868 ADFNKEKDLKEDDEEEIEEADEI 1890
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
629-969 |
1.24e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 1.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 629 KGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENM---RKLEQSALQAELEKERQALKNALGKAQFSEEK 705
Cdd:TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKigeIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 706 ----EQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNH-----VVDGLVRPEEVAARVDELRRKLKLGTGEMniHSPSDV 776
Cdd:TIGR02169 753 ienvKSELKELEARIEELEEDLHKLEEALNDLEARLSHsripeIQAELSKLEEEVSRIEARLREIEQKLNRL--TLEKEY 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 777 LGKSLADLQKQFSEILARSKWERDEaqvrerklQEEMALQQEKLATGQEEFrQACERALEAR---MNFDKRQHEARIQQM 853
Cdd:TIGR02169 831 LEKEIQELQEQRIDLKEQIKSIEKE--------IENLNGKKEELEEELEEL-EAALRDLESRlgdLKKERDELEAQLREL 901
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 854 ENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKKklEDAKSQEQVFGLDKELKKLKKAVATSDKLATA 933
Cdd:TIGR02169 902 ERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIP--EEELSLEDVQAELQRVEEEIRALEPVNMLAIQ 979
|
330 340 350
....*....|....*....|....*....|....*.
gi 2217375254 934 ELTIAKDQLKSLHGTVMKINQERAEELQEAERFSRK 969
Cdd:TIGR02169 980 EYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1261-1815 |
1.43e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.00 E-value: 1.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1261 NLENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKrqqqkdfidgnve 1340
Cdd:PRK03918 225 KLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEK------------- 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1341 slmtELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESElsctKEKTKNAVEKFTDAKRSLLQTESDAEE 1420
Cdd:PRK03918 292 ----AEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEK----EERLEELKKKLKELEKRLEELEERHEL 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1421 LER-RAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKdSDFQCLSKKKEKLTEELQKLQKDIEMAE 1499
Cdd:PRK03918 364 YEEaKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARI-GELKKEIKELKKAIEELKKAKGKCPVCG 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1500 R--NEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQgsMVQAKADLQEALRLGETEVT 1577
Cdd:PRK03918 443 RelTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKE--LAEQLKELEEKLKKYNLEEL 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1578 EKCNhiREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEkeeenLQVVLRQMSKHKTELKNILDMLQLENHElqglk 1657
Cdd:PRK03918 521 EKKA--EEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAE-----LEKKLDELEEELAELLKELEELGFESVE----- 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1658 lQHDQRVSELEKTQVAVLEEKLElenlqqisqqqKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKC 1737
Cdd:PRK03918 589 -ELEERLKELEPFYNEYLELKDA-----------EKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKY 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1738 DIWE-----KKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNdISAMQQQLQEKREAVNSLQE 1812
Cdd:PRK03918 657 SEEEyeelrEEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEK-LEKALERVEELREKVKKYKA 735
|
...
gi 2217375254 1813 ELA 1815
Cdd:PRK03918 736 LLK 738
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
419-1079 |
1.83e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 56.77 E-value: 1.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 419 DEQLRNDHMNLRGHTpldTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISeagKDLLYKQL 498
Cdd:pfam12128 229 DIQAIAGIMKIRPEF---TKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRT---LDDQWKEK 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 499 SGRLqlvnKLRQEALDLELQMEKQKQEIAGKQKEI---KDLQIAIDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLE 575
Cdd:pfam12128 303 RDEL----NGELSAADAAVAKDRSELEALEDQHGAfldADIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYN 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 576 SRLDEILSRIAKETEEIKDLEEQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTE 655
Cdd:pfam12128 379 RRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATA 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 656 VEQERDQLEIVAMDAENMRK------LEQSALQAELEKERQALKNALGKAQFSEEKEQENSELHAKLKHLQDDN-----N 724
Cdd:pfam12128 459 TPELLLQLENFDERIERAREeqeaanAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQagtllH 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 725 LLKQQLKDFQNHLNHVVD-GLVRPEEVAARVDELRRKLKLGTGEMNIHSPSdVLGKSLADLQKQFSEILARSKWERDEAQ 803
Cdd:pfam12128 539 FLRKEAPDWEQSIGKVISpELLHRTDLDPEVWDGSVGGELNLYGVKLDLKR-IDVPEWAASEEELRERLDKAEEALQSAR 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 804 VRERKLQEEMAL---QQEKLATGQEEFRQACERALE--ARMNFDKRQHEARIQQ-MENEIHYLQENLKSMEEIQGLTDLQ 877
Cdd:pfam12128 618 EKQAAAEEQLVQangELEKASREETFARTALKNARLdlRRLFDEKQSEKDKKNKaLAERKDSANERLNSLEAQLKQLDKK 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 878 LQEADEEKER--------ILAQLRELEKKKKLEDAKSQEQVFGLDKELKKLKKAVATS-----DKLATAELTIAK--DQL 942
Cdd:pfam12128 698 HQAWLEEQKEqkrearteKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETWykrdlASLGVDPDVIAKlkREI 777
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 943 KSLHGTVMKINQERAEELQ----EAERFSRKAAQAARDLTRAEAEIELLQNLLRQKGEQFRLEMEKTGVGTGANSQVLei 1018
Cdd:pfam12128 778 RTLERKIERIAVRRQEVLRyfdwYQETWLQRRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQ-- 855
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217375254 1019 EKLNETMERQRTEIARLQNV-LDLTGSDNKGGFENVLEEIAELRREVSYQNDYISSMADPFK 1079
Cdd:pfam12128 856 VRLSENLRGLRCEMSKLATLkEDANSEQAQGSIGERLAQLEDLKLKRDYLSESVKKYVEHFK 917
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1698-1940 |
1.88e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.93 E-value: 1.88e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1698 QKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQ 1777
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1778 ELDQLnRDKLSlhNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQdllhttkhqdvLLSEQTRLQKDISEWANRFE 1857
Cdd:COG4942 98 ELEAQ-KEELA--ELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKY-----------LAPARREQAEELRADLAELA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1858 DCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKV 1937
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
...
gi 2217375254 1938 LAA 1940
Cdd:COG4942 244 PAA 246
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1259-2163 |
2.10e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 56.72 E-value: 2.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1259 HHNLENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKK----SLECEVEELHRTVQKRQQQKDF 1334
Cdd:pfam01576 35 HQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEILHELESRLEEEEersqQLQNEKKKMQQHIQDLEEQLDE 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1335 IDGNVESLMTE-LEIEKSLKHHEDIVDEIECIEKTLLKRRSELRE-----ADRLLAEAESELSCTKEKTKNAVeKFTDAK 1408
Cdd:pfam01576 115 EEAARQKLQLEkVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEErisefTSNLAEEEEKAKSLSKLKNKHEA-MISDLE 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1409 RSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEEL 1488
Cdd:pfam01576 194 ERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQI 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1489 QKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEA 1568
Cdd:pfam01576 274 SELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQK 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1569 LRLGETEVTEKCNHIREVKSLLEE----LSFQKGELNVQI---SERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKN 1641
Cdd:pfam01576 354 HTQALEELTEQLEQAKRNKANLEKakqaLESENAELQAELrtlQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAE 433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1642 ILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQS 1721
Cdd:pfam01576 434 KLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKR 513
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1722 CVEclsKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQ 1801
Cdd:pfam01576 514 NVE---RQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLD 590
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1802 EKREAVNSLQEelanvqdhlnlaKQdllhttKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENK 1881
Cdd:pfam01576 591 HQRQLVSNLEK------------KQ------KKFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARALEEALEAK 652
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1882 LKLvqqemmfQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVlaaEERVRTLQEEERWCESLEKTL 1961
Cdd:pfam01576 653 EEL-------ERTNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQL---EELEDELQATEDAKLRLEVNM 722
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1962 ----SQTKRQLSEREQQLVEKSGELLALQKEADSMradfsllrnqfLTERKKAEKQVASLKEALKIQRSQLEKNLLTINE 2037
Cdd:pfam01576 723 qalkAQFERDLQARDEQGEEKRRQLVKQVRELEAE-----------LEDERKQRAQAVAAKKKLELDLKELEAQIDAANK 791
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2038 DSERDSSLLSKEQKQ----ENSCIQKEMATIELVAQ--DNHERARRLMKELNQMQYEYT---ELKKQMANQKDLERRQME 2108
Cdd:pfam01576 792 GREEAVKQLKKLQAQmkdlQRELEEARASRDEILAQskESEKKLKNLEAELLQLQEDLAaseRARRQAQQERDELADEIA 871
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|....*
gi 2217375254 2109 ISDAMRTLKSEVKDEIRTSLKNLNQFLPELPADLEAILERNENLEGELESLKENL 2163
Cdd:pfam01576 872 SGASGKSALQDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTEL 926
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
275-896 |
2.33e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 56.59 E-value: 2.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 275 LERDLEKKMIETEELKSKQTRFLEEIKNQDKLnksLKEEAMLQKQSCEELKSDLNTKNELLKQKTIELtracqKQYELEQ 354
Cdd:TIGR00606 442 IELKKEILEKKQEELKFVIKELQQLEGSSDRI---LELDQELRKAERELSKAEKNSLTETLKKEVKSL-----QNEKADL 513
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 355 ELAFYKIDAKFEPLNYYPSEYAEI-----DKA-PDESPYIGKSRYKRNM------FATESYIIDSAQAVQIKKMEPDEQL 422
Cdd:TIGR00606 514 DRKLRKLDQEMEQLNHHTTTRTQMemltkDKMdKDEQIRKIKSRHSDELtsllgyFPNKKQLEDWLHSKSKEINQTRDRL 593
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 423 RNDHMNLRGHTPLDTQLEDKEKKISAAQTRLSELHDEI---EKAEQQILRATEEFKQLEEAIQLKKISEAGKDLLYKQLS 499
Cdd:TIGR00606 594 AKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVcgsQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLT 673
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 500 GRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSH-MKAQKSGKEQQLDIMNKQYQQLESRL 578
Cdd:TIGR00606 674 DENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDeMLGLAPGRQSIIDLKEKEIPELRNKL 753
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 579 DEILSRIAKETEEIKDLEEQLteGQIAANEALKKDLE---GVISGLQEYLGTIKGQATQAQNECRKLrDEKETLLQRLTE 655
Cdd:TIGR00606 754 QKVNRDIQRLKNDIEEQETLL--GTIMPEEESAKVCLtdvTIMERFQMELKDVERKIAQQAAKLQGS-DLDRTVQQVNQE 830
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 656 VEQERDQLEIVAMDAENMRKLEQSALQA---------ELEKERQALKNALGKAQF----SEEKEQENSELHAKLKHLQDD 722
Cdd:TIGR00606 831 KQEKQHELDTVVSKIELNRKLIQDQQEQiqhlksktnELKSEKLQIGTNLQRRQQfeeqLVELSTEVQSLIREIKDAKEQ 910
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 723 NNLLKQQLKDFQNHLNHVVDGLVRPEEVAA-RVDELRRKLKLGTGEMNihSPSDVLGKSLADLQKQFSEILARSKWERDE 801
Cdd:TIGR00606 911 DSPLETFLEKDQQEKEELISSKETSNKKAQdKVNDIKEKVKNIHGYMK--DIENKIQDGKDDYLKQKETELNTVNAQLEE 988
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 802 AQVRERKLQEEMALQQEKLATGQEE------------FRQACERALEARMNFDKRQHEARIQQMENEIHYLQENLKSMEE 869
Cdd:TIGR00606 989 CEKHQEKINEDMRLMRQDIDTQKIQerwlqdnltlrkRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKR 1068
|
650 660
....*....|....*....|....*..
gi 2217375254 870 IQGLTDLQLQEADEEKERILAQLRELE 896
Cdd:TIGR00606 1069 NHVLALGRQKGYEKEIKHFKKELREPQ 1095
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
148-205 |
2.35e-07 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 49.45 E-value: 2.35e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217375254 148 KLRELNLSYNKISKIEG--IENMCNLQKLNLAGNEIEHI-PVWLGKkLKSLRVLNLKGNKI 205
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDgaFKGLSNLKVLDLSNNLLTTLsPGAFSG-LPSLRYLDLSGNRL 61
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
441-761 |
3.08e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.08 E-value: 3.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 441 DKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEaiqlkkiseagkdllykqlsgrlqlvnklRQEALDLELQME 520
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALEAELDALQE-----------------------------RREALQRLAEYS 657
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 521 KQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHMkaqksgkEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLT 600
Cdd:COG4913 658 WDEIDVASAEREIAELEAELERLDASSDDLAAL-------EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELD 730
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 601 EGQIAANEALKKDLEGVISGLQEYLGTIKGQATQA------QNECRKLRDEKETLLQRLTEVEQE---RDQLEIVAMDAE 671
Cdd:COG4913 731 ELQDRLEAAEDLARLELRALLEERFAAALGDAVERelrenlEERIDALRARLNRAEEELERAMRAfnrEWPAETADLDAD 810
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 672 NM---------RKLEQSALQAELEKERQALKNALG--KAQFSEEKEQENSELHAKLKHLqddNNLLKQ------------ 728
Cdd:COG4913 811 LEslpeylallDRLEEDGLPEYEERFKELLNENSIefVADLLSKLRRAIREIKERIDPL---NDSLKRipfgpgrylrle 887
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 2217375254 729 -------QLKDFQNHLNHVVDGLVRPEEVAA-----RVDELRRKL 761
Cdd:COG4913 888 arprpdpEVREFRQELRAVTSGASLFDEELSearfaALKRLIERL 932
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
551-872 |
3.73e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.83 E-value: 3.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 551 SHMKAQKSGKEQQLDIMNKQYQQLESRLDEI------LSRIAKETEEIKDLEEQLTEGQIAANEALKKDLEGVISGLQEy 624
Cdd:TIGR02168 168 SKYKERRKETERKLERTRENLDRLEDILNELerqlksLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQE- 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 625 lgtikgQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEiVAMDAENMRKLEQSALQAELEKERQALKNALGKAQFS-- 702
Cdd:TIGR02168 247 ------ELKEAEEELEELTAELQELEEKLEELRLEVSELE-EEIEELQKELYALANEISRLEQQKQILRERLANLERQle 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 703 ------EEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLV----RPEEVAARVDELRRKLKLGTGEMNIH- 771
Cdd:TIGR02168 320 eleaqlEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEelesRLEELEEQLETLRSKVAQLELQIASLn 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 772 ---SPSDVLGKSLADLQKQFSEILARSKWERDEAQVRErkLQEEMALQQEKLATGQEEFRQACERALEARMNFdkRQHEA 848
Cdd:TIGR02168 400 neiERLEARLERLEDRRERLQQEIEELLKKLEEAELKE--LQAELEELEEELEELQEELERLEEALEELREEL--EEAEQ 475
|
330 340
....*....|....*....|....
gi 2217375254 849 RIQQMENEIHYLQENLKSMEEIQG 872
Cdd:TIGR02168 476 ALDAAERELAQLQARLDSLERLQE 499
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
259-900 |
3.95e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 3.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 259 DRQEAFERFSLEEVERLERDLEKKmIETEELKSKqtrfLEEIKNQDKLNKSLKEEAMLqkqscEELKSDLNTKNELLKQK 338
Cdd:TIGR02169 187 ERLDLIIDEKRQQLERLRREREKA-ERYQALLKE----KREYEGYELLKEKEALERQK-----EAIERQLASLEEELEKL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 339 TIELTRACQKQYELEQELAfyKIDAKFEPLNyyPSEYAEIdKAPDESPYIGKSRYKRNMFATESYIIDSAQAVQIKKMEP 418
Cdd:TIGR02169 257 TEEISELEKRLEEIEQLLE--ELNKKIKDLG--EEEQLRV-KEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEI 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 419 DEQLRNdhmnlrgHTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQL-EEAIQLKKISEAGKDLLY-- 495
Cdd:TIGR02169 332 DKLLAE-------IEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETrDELKDYREKLEKLKREINel 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 496 -KQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSkdpKHSHMKAQKSGKEQQLDIMNKQYQQL 574
Cdd:TIGR02169 405 kRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW---KLEQLAADLSKYEQELYDLKEEYDRV 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 575 ESRLDEILSRIAkETEEIKDLEEQLTEGQIAANEALKKDLEGVIsGLQEYLGTIKGQ----------------------- 631
Cdd:TIGR02169 482 EKELSKLQRELA-EAEAQARASEERVRGGRAVEEVLKASIQGVH-GTVAQLGSVGERyataievaagnrlnnvvveddav 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 632 ATQAQNECRKLRDEKETLLQrLTEVEQERDQLEIVAMDA------------------------------------ENMRK 675
Cdd:TIGR02169 560 AKEAIELLKRRKAGRATFLP-LNKMRDERRDLSILSEDGvigfavdlvefdpkyepafkyvfgdtlvvedieaarRLMGK 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 676 LEQSALQAELEKERQAL----KNALGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEE-- 749
Cdd:TIGR02169 639 YRMVTLEGELFEKSGAMtggsRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRki 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 750 ----------------VAARVDELRRKLK-LGTGEMNIHSPSDVLGKSLADLQKQFSEI-LARSKWERDEAQVRERKLQE 811
Cdd:TIGR02169 719 geiekeieqleqeeekLKERLEELEEDLSsLEQEIENVKSELKELEARIEELEEDLHKLeEALNDLEARLSHSRIPEIQA 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 812 EMALQQEKLATgQEEFRQACERALEARmNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQ 891
Cdd:TIGR02169 799 ELSKLEEEVSR-IEARLREIEQKLNRL-TLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAA 876
|
....*....
gi 2217375254 892 LRELEKKKK 900
Cdd:TIGR02169 877 LRDLESRLG 885
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
435-602 |
3.97e-07 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 53.39 E-value: 3.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 435 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDLLYKQLSGRLQLVNKLRqEALD 514
Cdd:COG1579 15 LDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNK-EYEA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 515 LELQMEKQKQEIAGKQKEIKDLQIAIDSLdskdpkhshmKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKD 594
Cdd:COG1579 94 LQKEIESLKRRISDLEDEILELMERIEEL----------EEELAELEAELAELEAELEEKKAELDEELAELEAELEELEA 163
|
....*...
gi 2217375254 595 LEEQLTEG 602
Cdd:COG1579 164 EREELAAK 171
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
435-1063 |
4.04e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 55.43 E-value: 4.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 435 LDTQLEDKEKK-----ISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQlkkiseagkdllykqlsgrlqlvnklr 509
Cdd:PRK02224 192 LKAQIEEKEEKdlherLNGLESELAELDEEIERYEEQREQARETRDEADEVLE--------------------------- 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 510 qealdlelqmekqkqEIAGKQKEIKDLQIAIDSLDSKdpkhshmkaqKSGKEQQLDIMNKQYQQLESRLDEILSRIaket 589
Cdd:PRK02224 245 ---------------EHEERREELETLEAEIEDLRET----------IAETEREREELAEEVRDLRERLEELEEER---- 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 590 EEIKDlEEQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMD 669
Cdd:PRK02224 296 DDLLA-EAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEE 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 670 AENM---RKLEQSALQAELEKERQALKNA---LGKAQ-FSEEKEQENSELHAKLKHLQDDnnllkqqlkdfqnhlnhvvd 742
Cdd:PRK02224 375 AREAvedRREEIEELEEEIEELRERFGDApvdLGNAEdFLEELREERDELREREAELEAT-------------------- 434
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 743 gLVRPEEVAARVDELRRKLKLGTGEMNIHSPSDVlgKSLADLQKQFSEILA-RSKWERDEAQVRERKLQEEMALQQEKLA 821
Cdd:PRK02224 435 -LRTARERVEEAEALLEAGKCPECGQPVEGSPHV--ETIEEDRERVEELEAeLEDLEEEVEEVEERLERAEDLVEAEDRI 511
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 822 TGQEEFRQACERALEarmnfdkrQHEARIQQMENEIHYLQENLKSMEEiqgltdlqlqEADEEKERilAQLRELEKKKKL 901
Cdd:PRK02224 512 ERLEERREDLEELIA--------ERRETIEEKRERAEELRERAAELEA----------EAEEKREA--AAEAEEEAEEAR 571
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 902 EDAKSQEQVFGLDKELKKLKKAVATSDklatAELTIAKDQLKSLhgtvmkinQERAEELQEAERFSRKAAQAARDLTRA- 980
Cdd:PRK02224 572 EEVAELNSKLAELKERIESLERIRTLL----AAIADAEDEIERL--------REKREALAELNDERRERLAEKRERKREl 639
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 981 -----EAEIELLQNlLRQKGEQFrlemektgvgtgansqvleIEKLNETMERQRTEIARLQNVLdltgsdnkGGFENVLE 1055
Cdd:PRK02224 640 eaefdEARIEEARE-DKERAEEY-------------------LEQVEEKLDELREERDDLQAEI--------GAVENELE 691
|
....*...
gi 2217375254 1056 EIAELRRE 1063
Cdd:PRK02224 692 ELEELRER 699
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
126-181 |
4.62e-07 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 48.67 E-value: 4.62e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 126 KLEVLNLSYNLIGKIEK--LDKLLKLRELNLSYNKISKIEG--IENMCNLQKLNLAGNEI 181
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDgaFKGLSNLKVLDLSNNLLTTLSPgaFSGLPSLRYLDLSGNRL 61
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1258-1671 |
6.72e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 54.73 E-value: 6.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1258 EHHNLENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDD---LLQEKKSLECEVEELHRTVQK-----RQ 1329
Cdd:pfam05483 368 EQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEdekLLDEKKQFEKIAEELKGKEQElifllQA 447
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1330 QQKDFIDGNVESLMTELEIEKSLKHHEDIVDEiecIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKR 1409
Cdd:pfam05483 448 REKEIHDLEIQLTAIKTSEEHYLKEVEDLKTE---LEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIIN 524
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1410 SLLQTESDAEELErRAQETAVNLVKADQQLRSLQADAKDLEQHKI-KQEEILKEINKIVAAKDSDFQCLSKKKEKLTEEL 1488
Cdd:pfam05483 525 CKKQEERMLKQIE-NLEEKEMNLRDELESVREEFIQKGDEVKCKLdKSEENARSIEYEVLKKEKQMKILENKCNNLKKQI 603
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1489 QKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVL----DRQLGHKKEELHLLQGSMVQAKAD 1564
Cdd:pfam05483 604 ENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIidnyQKEIEDKKISEEKLLEEVEKAKAI 683
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1565 LQEALRLgETEVTEKCNH-IREVKSLLEELSFQKGELnvqISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNIL 1643
Cdd:pfam05483 684 ADEAVKL-QKEIDKRCQHkIAEMVALMEKHKHQYDKI---IEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLK 759
|
410 420
....*....|....*....|....*...
gi 2217375254 1644 DMLQLENHELQGLKLQHDQRVSELEKTQ 1671
Cdd:pfam05483 760 KQLEIEKEEKEKLKMEAKENTAILKDKK 787
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1262-1959 |
7.43e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.68 E-value: 7.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1262 LENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKrqqqkdfidgnves 1341
Cdd:PRK03918 160 YENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEK-------------- 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1342 lmteleIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELsctkEKTKNAVEKFTDAKRSLLQTESDAEEL 1421
Cdd:PRK03918 226 ------LEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERI----EELKKEIEELEEKVKELKELKEKAEEY 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1422 ERRAQEtavnLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKivaaKDSDFQCLSKKKEKLTEELQKLQKDIEMAERn 1501
Cdd:PRK03918 296 IKLSEF----YEEYLDELREIEKRLSRLEEEINGIEERIKELEE----KEERLEELKKKLKELEKRLEELEERHELYEE- 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1502 edhhlqvlkesevlLQAKRAELEKLKSQVTsqqqemavldrqlGHKKEELHLLQGSMVQAKADLQEALRLGETEVTEKCN 1581
Cdd:PRK03918 367 --------------AKAKKEELERLKKRLT-------------GLTPEKLEKELEELEKAKEEIEEEISKITARIGELKK 419
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1582 HIREVKSLLEELSFQKGELNVQISErktqltlikqEIEKEEENLqvvlrqMSKHKTELKNILDMLQLENHELQGLKlqhd 1661
Cdd:PRK03918 420 EIKELKKAIEELKKAKGKCPVCGRE----------LTEEHRKEL------LEEYTAELKRIEKELKEIEEKERKLR---- 479
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1662 QRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKcdiwe 1741
Cdd:PRK03918 480 KELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEEL----- 554
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1742 kklaqtkrvlaaaeenskmeQSNLEKLELNVRKLQQELDQLNRDKLSL-HNDISAMQQQLQEKREAVNSLQEelanvqdh 1820
Cdd:PRK03918 555 --------------------KKKLAELEKKLDELEEELAELLKELEELgFESVEELEERLKELEPFYNEYLE-------- 606
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1821 LNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQvlQNEIEENKLKLVQQEMMFQRLQKERES 1900
Cdd:PRK03918 607 LKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYS--EEEYEELREEYLELSRELAGLRAELEE 684
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217375254 1901 EESKLETSKVTLKEQQHQLE--KELTDQKSKLDQVLSKVLAAEERVRTLQEEERwCESLEK 1959
Cdd:PRK03918 685 LEKRREEIKKTLEKLKEELEerEKAKKELEKLEKALERVEELREKVKKYKALLK-ERALSK 744
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
526-875 |
7.47e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.92 E-value: 7.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 526 IAGKQKEIKDLQIAIDSLDskdpkhshmkaqksgkeQQLDIMNKQYQQLESRLDEiLSRIAKETEEIKDLEEqlTEGQIA 605
Cdd:COG4913 612 LAALEAELAELEEELAEAE-----------------ERLEALEAELDALQERREA-LQRLAEYSWDEIDVAS--AEREIA 671
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 606 ANEALKKDLE---GVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEivaMDAENMRKLEQSALQ 682
Cdd:COG4913 672 ELEAELERLDassDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQ---DRLEAAEDLARLELR 748
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 683 AELEKERQALKNALGKAQFSEEKEQENSELHAKLKHLQDD-NNLLKQQLKDFQNHLNHVVDGLVRPEEVAARVDELRR-- 759
Cdd:COG4913 749 ALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEElERAMRAFNREWPAETADLDADLESLPEYLALLDRLEEdg 828
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 760 ------KLKLGTGEMNIHSPSDVLGK---SLADLQKQFSEI---LARSKWERDEA---QVRERKLQEEmalqqeklatgq 824
Cdd:COG4913 829 lpeyeeRFKELLNENSIEFVADLLSKlrrAIREIKERIDPLndsLKRIPFGPGRYlrlEARPRPDPEV------------ 896
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 2217375254 825 EEFRQACERALEARMNFDKRQHEARIQQMENEIHYL--QENLKSMEEIQGLTD 875
Cdd:COG4913 897 REFRQELRAVTSGASLFDEELSEARFAALKRLIERLrsEEEESDRRWRARVLD 949
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
441-722 |
8.65e-07 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 54.58 E-value: 8.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 441 DKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQlkkiseagkdlLYKQLSGRLQL--VNKLRQEALDLELQ 518
Cdd:PRK04863 834 DPEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLS-----------ALNRLLPRLNLlaDETLADRVEEIREQ 902
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 519 M---EKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHMKAQKsgkeQQLDIMNKQYQQLESRLDEILSRIAKETEEikDL 595
Cdd:PRK04863 903 LdeaEEAKRFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDY----QQAQQTQRDAKQQAFALTEVVQRRAHFSYE--DA 976
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 596 EEQLTEGQiAANEALKKDLEgvisGLQEYLGTIKGQATQAQNECRK-------LRDEKETLLQRLTEVEQERDQLEIVA- 667
Cdd:PRK04863 977 AEMLAKNS-DLNEKLRQRLE----QAEQERTRAREQLRQAQAQLAQynqvlasLKSSYDAKRQMLQELKQELQDLGVPAd 1051
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 2217375254 668 MDAENMRKLEQSALQAELEKERQAlKNALGKAQFSEEKEQENseLHAKLKHLQDD 722
Cdd:PRK04863 1052 SGAEERARARRDELHARLSANRSR-RNQLEKQLTFCEAEMDN--LTKKLRKLERD 1103
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1571-2240 |
9.25e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 9.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1571 LGETEVTEKcnHIREVKSLLEELSFQKGELNvqiSERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLEN 1650
Cdd:TIGR02169 176 LEELEEVEE--NIERLDLIIDEKRQQLERLR---REREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1651 HELQGLKLQHDQRVSELEktqvavleeklelenlqqisqqqkgEIEwqkQLLERDKREIERMTA-ESRALQSCVECLSKE 1729
Cdd:TIGR02169 251 EELEKLTEEISELEKRLE-------------------------EIE---QLLEELNKKIKDLGEeEQLRVKEKIGELEAE 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1730 KEDLqekcdiwEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNS 1809
Cdd:TIGR02169 303 IASL-------ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1810 LQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEM 1889
Cdd:TIGR02169 376 VDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1890 MFQRLQKERESEESKLETskvtLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQL- 1968
Cdd:TIGR02169 456 KLEQLAADLSKYEQELYD----LKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLg 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1969 --SEREQQLVEKSG----------------ELLALQKEADSMRADFSLL------------------------------- 1999
Cdd:TIGR02169 532 svGERYATAIEVAAgnrlnnvvveddavakEAIELLKRRKAGRATFLPLnkmrderrdlsilsedgvigfavdlvefdpk 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2000 -----------------------------------------------------RNQFLTERKKAEKQVASLKEALKIQRS 2026
Cdd:TIGR02169 612 yepafkyvfgdtlvvedieaarrlmgkyrmvtlegelfeksgamtggsraprgGILFSRSEPAELQRLRERLEGLKRELS 691
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2027 QLEKNLLTINEDSERDSSLLSKEQKqENSCIQKEMATIELVAQDNHERARRLMKELNQMQYEYTELKKQMAN-------- 2098
Cdd:TIGR02169 692 SLQSELRRIENRLDELSQELSDASR-KIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKElearieel 770
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2099 QKDLERRQMEISDAMRTLKSEVKDEIRTSLKNLNQFLPELPA---DLEAILERNENLEGELESLKENLpftmnegpfEEK 2175
Cdd:TIGR02169 771 EEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEArlrEIEQKLNRLTLEKEYLEKEIQEL---------QEQ 841
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217375254 2176 LNFSQVHIMDEHWRGEALREKLRHREDRLKaqlrhcmSKQAEVlikgkRQTEGTLHSLRRQVDAL 2240
Cdd:TIGR02169 842 RIDLKEQIKSIEKEIENLNGKKEELEEELE-------ELEAAL-----RDLESRLGDLKKERDEL 894
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
435-662 |
1.01e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 54.25 E-value: 1.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 435 LDTQLEDKEKKISAA----QTRLSELHDEIEKAEQQIlratEEFKQLEEAIQLkkisEAGKDLLYKQLSGrlqlvnkLRQ 510
Cdd:COG3206 162 LEQNLELRREEARKAleflEEQLPELRKELEEAEAAL----EEFRQKNGLVDL----SEEAKLLLQQLSE-------LES 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 511 EALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLdSKDPKHSHMKAQKSGKEQQLDIMNKQY-------QQLESRLDEILS 583
Cdd:COG3206 227 QLAEARAELAEAEARLAALRAQLGSGPDALPEL-LQSPVIQQLRAQLAELEAELAELSARYtpnhpdvIALRAQIAALRA 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 584 RIAKETEEIKdleeQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQA---QNECRKLRDEKETLLQRLTEVEQER 660
Cdd:COG3206 306 QLQQEAQRIL----ASLEAELEALQAREASLQAQLAQLEARLAELPELEAELrrlEREVEVARELYESLLQRLEEARLAE 381
|
..
gi 2217375254 661 DQ 662
Cdd:COG3206 382 AL 383
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1365-1576 |
1.02e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 54.25 E-value: 1.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1365 IEKTLLKRRSELREADRLLAE--AESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSL 1442
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEEfrQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPEL 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1443 QADA--KDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEdhhLQVLKESEVLLQAKR 1520
Cdd:COG3206 260 LQSPviQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAE---LEALQAREASLQAQL 336
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2217375254 1521 AELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKadLQEALRLGETEV 1576
Cdd:COG3206 337 AQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEAR--LAEALTVGNVRV 390
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
440-730 |
1.20e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 54.19 E-value: 1.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 440 EDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEaiqlkkiseagkdllykqlsgRLQLVNKL----------- 508
Cdd:COG3096 832 PDPEAELAALRQRRSELERELAQHRAQEQQLRQQLDQLKE---------------------QLQLLNKLlpqanlladet 890
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 509 ---RQEALDLEL-QMEKQKQEIAGKQKEIKDLQIAIDSLDSkDPkhshmkaqksgkeQQLDIMNKQYQQLESRLDEILSR 584
Cdd:COG3096 891 ladRLEELREELdAAQEAQAFIQQHGKALAQLEPLVAVLQS-DP-------------EQFEQLQADYLQAKEQQRRLKQQ 956
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 585 IAKETEEIK--------DLEEQLTEGQiAANEALKKDLEGV---ISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRL 653
Cdd:COG3096 957 IFALSEVVQrrphfsyeDAVGLLGENS-DLNEKLRARLEQAeeaRREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTL 1035
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217375254 654 TEVEQERDQLEI-VAMDAENMRKLEQSALQAELEKERQAlKNALGKAQFSEEKEQENseLHAKLKHLQDDNNLLKQQL 730
Cdd:COG3096 1036 QELEQELEELGVqADAEAEERARIRRDELHEELSQNRSR-RSQLEKQLTRCEAEMDS--LQKRLRKAERDYKQEREQV 1110
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1384-1573 |
1.57e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 52.91 E-value: 1.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1384 AEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKE- 1462
Cdd:COG3883 12 AFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEr 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1463 -------------INKIVAAKD-SDF-------QCLSKKKEKLTEELQKLQKDIEMAERNedhhlqvLKESEVLLQAKRA 1521
Cdd:COG3883 92 aralyrsggsvsyLDVLLGSESfSDFldrlsalSKIADADADLLEELKADKAELEAKKAE-------LEAKLAELEALKA 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2217375254 1522 ELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRLGE 1573
Cdd:COG3883 165 ELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAA 216
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1660-2161 |
1.59e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.51 E-value: 1.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1660 HDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLqekcdi 1739
Cdd:PRK02224 246 HEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREEL------ 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1740 wEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQD 1819
Cdd:PRK02224 320 -EDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1820 HLNLAKQDLLHTTKHQDVLLSEQTRLQKDIsewanrfedcqKEEETKqqqLQVLQNEIEENklklvqqemmfQRLQKE-- 1897
Cdd:PRK02224 399 RFGDAPVDLGNAEDFLEELREERDELRERE-----------AELEAT---LRTARERVEEA-----------EALLEAgk 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1898 -----RESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVlaaeERVRTLQEEERWCESLEKTLSQTKRQLSERE 1972
Cdd:PRK02224 454 cpecgQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERL----ERAEDLVEAEDRIERLEERREDLEELIAERR 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1973 QQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEK---QVASL---KEALKIQRSQLEK--NLLTINEDSERDSS 2044
Cdd:PRK02224 530 ETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEareEVAELnskLAELKERIESLERirTLLAAIADAEDEIE 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2045 LLS--KEQKQENSCIQKEMatielvAQDNHERARRLMKELNQMQYEYTELKKQMAnqkdlERRQMEISDAMRTLKSEvKD 2122
Cdd:PRK02224 610 RLRekREALAELNDERRER------LAEKRERKRELEAEFDEARIEEAREDKERA-----EEYLEQVEEKLDELREE-RD 677
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 2217375254 2123 E-------IRTSLKNLNQFLPELPAdLEAILERNENLEGELESLKE 2161
Cdd:PRK02224 678 DlqaeigaVENELEELEELRERREA-LENRVEALEALYDEAEELES 722
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1294-1819 |
1.76e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.51 E-value: 1.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1294 EKEMEELHHNIDDLLQEKKSLECEVEELH----RTVQKRQQQKDFIDGNVESLMTELEIEKSLKHHEDIVDEIECIEKTL 1369
Cdd:PRK02224 198 EKEEKDLHERLNGLESELAELDEEIERYEeqreQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREEL 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1370 LKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLlqtESDAEELERRAQETAVNLVKADQQLRSLQADAKDL 1449
Cdd:PRK02224 278 AEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREEL---EDRDEELRDRLEECRVAAQAHNEEAESLREDADDL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1450 EQHKIKQEEILKEINKIVAAKDSDfqcLSKKKEKLTEelqkLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQ 1529
Cdd:PRK02224 355 EERAEELREEAAELESELEEAREA---VEDRREEIEE----LEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRER 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1530 VTSQQQEMAVLDRQLgHKKEELhLLQGSMVQAKADLQEALRLGETEvtEKCNHIREVKSLLEELSFQKGELNVQIsERKT 1609
Cdd:PRK02224 428 EAELEATLRTARERV-EEAEAL-LEAGKCPECGQPVEGSPHVETIE--EDRERVEELEAELEDLEEEVEEVEERL-ERAE 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1610 QLTLIKQEIEKEEENLQVVLRQMSKHKTELKNilDMLQLEnhELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQ 1689
Cdd:PRK02224 503 DLVEAEDRIERLEERREDLEELIAERRETIEE--KRERAE--ELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELN 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1690 QQKGEIEWQKQLLERdkreIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLA---QTKRVLAAAEENSKME--QSN 1764
Cdd:PRK02224 579 SKLAELKERIESLER----IRTLLAAIADAEDEIERLREKREALAELNDERRERLAekrERKRELEAEFDEARIEeaRED 654
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217375254 1765 LEKLELNVRKLQQELDQLNRDKLSLHNDISAMQ------QQLQEKREAVNSLQEELANVQD 1819
Cdd:PRK02224 655 KERAEEYLEQVEEKLDELREERDDLQAEIGAVEneleelEELRERREALENRVEALEALYD 715
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1262-1862 |
1.80e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 1.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1262 LENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVES 1341
Cdd:TIGR02169 366 LEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKED 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1342 LmtELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELScTKEKTKNAVEK-----------FTDAKRS 1410
Cdd:TIGR02169 446 K--ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELA-EAEAQARASEErvrggraveevLKASIQG 522
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1411 LLQTESDAEELERRAQ----------------ETAVNLVKADQQLRSLQAD-AKDLEQHKIKQEEILKEINKIVAAKDS- 1472
Cdd:TIGR02169 523 VHGTVAQLGSVGERYAtaievaagnrlnnvvvEDDAVAKEAIELLKRRKAGrATFLPLNKMRDERRDLSILSEDGVIGFa 602
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1473 -DFQCLSKKKEKLTEELQK---LQKDIEMAERNEDHHLQVLKESEVL----------LQAKRAEL--EKLKSQVTSQQQE 1536
Cdd:TIGR02169 603 vDLVEFDPKYEPAFKYVFGdtlVVEDIEAARRLMGKYRMVTLEGELFeksgamtggsRAPRGGILfsRSEPAELQRLRER 682
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1537 MAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRlgetEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQ 1616
Cdd:TIGR02169 683 LEGLKRELSSLQSELRRIENRLDELSQELSDASR----KIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKS 758
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1617 EIEKEEENLQVVLRQMSKHKTELKNILDMLQLE-----NHELQGLKLQH---DQRVSELEKTQVAVLEEKLELENLQQIS 1688
Cdd:TIGR02169 759 ELKELEARIEELEEDLHKLEEALNDLEARLSHSripeiQAELSKLEEEVsriEARLREIEQKLNRLTLEKEYLEKEIQEL 838
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1689 QQQKGEIEWQK----QLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSN 1764
Cdd:TIGR02169 839 QEQRIDLKEQIksieKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKR 918
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1765 LEKLELNVRKLQQELDQLNRDKLSLHNDISAMQ--QQLQEKREAVnslQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQ 1842
Cdd:TIGR02169 919 LSELKAKLEALEEELSEIEDPKGEDEEIPEEELslEDVQAELQRV---EEEIRALEPVNMLAIQEYEEVLKRLDELKEKR 995
|
650 660
....*....|....*....|
gi 2217375254 1843 TRLQKDISEWANRFEDCQKE 1862
Cdd:TIGR02169 996 AKLEEERKAILERIEEYEKK 1015
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
435-609 |
2.03e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 52.52 E-value: 2.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 435 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQL--KKISEAGKDL-------------LYKQ-- 497
Cdd:COG3883 21 KQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKlqAEIAEAEAEIeerreelgeraraLYRSgg 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 498 ----------------LSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKdpkhshMKAQKSGKE 561
Cdd:COG3883 101 svsyldvllgsesfsdFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAE------LEAAKAELE 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2217375254 562 QQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANEA 609
Cdd:COG3883 175 AQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAA 222
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
437-999 |
2.07e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 53.43 E-value: 2.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 437 TQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDLLY-----KQLSGRLQLVNKLRQE 511
Cdd:TIGR00618 246 TQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQieqqaQRIHTELQSKMRSRAK 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 512 ALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDeiLSRIAKETEE 591
Cdd:TIGR00618 326 LLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQ--KLQSLCKELD 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 592 IKDLEEQLTEGQIAANEALKKDL---EGVISGLQEYLgTIKGQATQAQNECRKLRD-EKETLLQRLTEVEQERDQLEIVA 667
Cdd:TIGR00618 404 ILQREQATIDTRTSAFRDLQGQLahaKKQQELQQRYA-ELCAAAITCTAQCEKLEKiHLQESAQSLKEREQQLQTKEQIH 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 668 MDAENMRKLEQSALQaELEKERQALKNALGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRP 747
Cdd:TIGR00618 483 LQETRKKAVVLARLL-ELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASL 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 748 EEVAARVDElrRKLKLGTGEMNIHSPSDVLGKSLADLQKQFSEILARSKWERDEAQVRERKLQEEMALQQEKLATGQEEF 827
Cdd:TIGR00618 562 KEQMQEIQQ--SFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQ 639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 828 RQACERALEARMNFDKRQHEARIQQM---ENEIHYLQENLKSMEEIQGLTDlQLQEADEEKERILAQLRELEKKKKLEDA 904
Cdd:TIGR00618 640 ELALKLTALHALQLTLTQERVREHALsirVLPKELLASRQLALQKMQSEKE-QLTYWKEMLAQCQTLLRELETHIEEYDR 718
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 905 KSQEQVFGLDKELKKLKKAVATSDKLATAELTIAKDQLKSLhgtvMKINQERAEELQEAERFSRKAAQAARDLTRAEAEI 984
Cdd:TIGR00618 719 EFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKAR----TEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLR 794
|
570
....*....|....*
gi 2217375254 985 ELLQNLLRQKGEQFR 999
Cdd:TIGR00618 795 EEDTHLLKTLEAEIG 809
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1766-2125 |
2.32e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 53.42 E-value: 2.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1766 EKLELNVRKLQQELDQLN-RDKLSLHND-ISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTK---HQDVL-- 1838
Cdd:COG3096 279 ERRELSERALELRRELFGaRRQLAEEQYrLVEMARELEELSARESDLEQDYQAASDHLNLVQTALRQQEKierYQEDLee 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1839 LSEQTRLQKDISEWAN--------RFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERE-SEESKLETSK 1909
Cdd:COG3096 359 LTERLEEQEEVVEEAAeqlaeaeaRLEAAEEEVDSLKSQLADYQQALDVQQTRAIQYQQAVQALEKARAlCGLPDLTPEN 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1910 V-----TLKEQQHQLEKELTDQKSKLD-------------QVLSKVL------AAEERVRTLQEEERWCESLEKTLSQTK 1965
Cdd:COG3096 439 AedylaAFRAKEQQATEEVLELEQKLSvadaarrqfekayELVCKIAgeversQAWQTARELLRRYRSQQALAQRLQQLR 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1966 RQLSEREQqlveksgeLLALQKEADSMRADFSLLRNQFLTerkkAEKQVASLKEALKIQRSQLEKNLltiNEDSERDSSl 2045
Cdd:COG3096 519 AQLAELEQ--------RLRQQQNAERLLEEFCQRIGQQLD----AAEELEELLAELEAQLEELEEQA---AEAVEQRSE- 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2046 LSKEQKQENSCIqKEMATIELVAQDNHERARRLMKELNQMQYEYTELKKQMANQKDLERRQMEISDAMRTLKSEVKDEIR 2125
Cdd:COG3096 583 LRQQLEQLRARI-KELAARAPAWLAAQDALERLREQSGEALADSQEVTAAMQQLLEREREATVERDELAARKQALESQIE 661
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1277-1990 |
2.63e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 52.92 E-value: 2.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1277 KSKKREERWMRasKRQSEKEMEELHHNIDDLLQE---KKSLECEVEELHRTVQKRQQQkdfidgnVESLMTELEIEKSLK 1353
Cdd:pfam12128 218 LNRQQVEHWIR--DIQAIAGIMKIRPEFTKLQQEfntLESAELRLSHLHFGYKSDETL-------IASRQEERQETSAEL 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1354 HHEDIVDEIECIEKTLlKRRSELREADRLLAEAESELSCTKEKT----KNAVEKFTDAKRSLLQTESDAEELERR--AQE 1427
Cdd:pfam12128 289 NQLLRTLDDQWKEKRD-ELNGELSAADAAVAKDRSELEALEDQHgaflDADIETAAADQEQLPSWQSELENLEERlkALT 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1428 TAVNLVKADQQLRSLQAD---AKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSkkkeklteelQKLQKDIEMAERNedh 1504
Cdd:pfam12128 368 GKHQDVTAKYNRRRSKIKeqnNRDIAGIKDKLAKIREARDRQLAVAEDDLQALE----------SELREQLEAGKLE--- 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1505 hlqvLKESEVLLQAKRAELEKLKSQVTSQQQEMAvldrQLGHKKEELHLLQGSMVQAKA---DLQEALRLGETEVTEKCN 1581
Cdd:pfam12128 435 ----FNEEEYRLKSRLGELKLRLNQATATPELLL----QLENFDERIERAREEQEAANAeveRLQSELRQARKRRDQASE 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1582 HIREVKSLLEELSFQKGELNVQISERK-TQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENH-ELQGLKLq 1659
Cdd:pfam12128 507 ALRQASRRLEERQSALDELELQLFPQAgTLLHFLRKEAPDWEQSIGKVISPELLHRTDLDPEVWDGSVGGElNLYGVKL- 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1660 HDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQScvecLSKEKEDLQEKCDI 1739
Cdd:pfam12128 586 DLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTA----LKNARLDLRRLFDE 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1740 WEKKLAQTKRVLAAAEENSKMEQSNLEK-LELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREA-VNSLQEELANV 1817
Cdd:pfam12128 662 KQSEKDKKNKALAERKDSANERLNSLEAqLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAqLALLKAAIAAR 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1818 QD----HLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEE-----------ETKQQQLQVLQNEIEENKL 1882
Cdd:pfam12128 742 RSgakaELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRqevlryfdwyqETWLQRRPRLATQLSNIER 821
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1883 KLVQQEMMFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLdqvlskvlaaeERVRTLQEEERwCESLEKTLS 1962
Cdd:pfam12128 822 AISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEM-----------SKLATLKEDAN-SEQAQGSIG 889
|
730 740
....*....|....*....|....*...
gi 2217375254 1963 QTKRQLserEQQLVEKSGELLALQKEAD 1990
Cdd:pfam12128 890 ERLAQL---EDLKLKRDYLSESVKKYVE 914
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
243-763 |
2.79e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.81 E-value: 2.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 243 HLRSLESLEGQPVTTQDRQEAFERFSLEEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDK--------LNKSLKEEA 314
Cdd:pfam15921 315 YMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDqlqklladLHKREKELS 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 315 MLQKQ-------------SCEELKSDLNTKN-ELLKQKTIELTRACQKQYELEQELAfyKIDAKFEPLNYYPSEYAEIDk 380
Cdd:pfam15921 395 LEKEQnkrlwdrdtgnsiTIDHLRRELDDRNmEVQRLEALLKAMKSECQGQMERQMA--AIQGKNESLEKVSSLTAQLE- 471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 381 apdespyigksrykrnmfATESYIIDSAQAVQIKKM--EPDEQLRNDhmnlrghtpLDTQLEDKEKKISAAQTRLSELHD 458
Cdd:pfam15921 472 ------------------STKEMLRKVVEELTAKKMtlESSERTVSD---------LTASLQEKERAIEATNAEITKLRS 524
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 459 EIEKAEQQILRATEEFKQLEEA---IQLKKISEAGKD----LLYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQK 531
Cdd:pfam15921 525 RVDLKLQELQHLKNEGDHLRNVqteCEALKLQMAEKDkvieILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRL 604
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 532 EIKDLQIAidsLDSKDPKHSHMKAQKSGKE-QQLDIMNKQYQQLES------RLDEILSRIAKETEEIKDLEEQLtegqi 604
Cdd:pfam15921 605 ELQEFKIL---KDKKDAKIRELEARVSDLElEKVKLVNAGSERLRAvkdikqERDQLLNEVKTSRNELNSLSEDY----- 676
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 605 aanEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEketllqrLTEVEQERDQLEIVAMDAENM---RKLEQSAL 681
Cdd:pfam15921 677 ---EVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNT-------LKSMEGSDGHAMKVAMGMQKQitaKRGQIDAL 746
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 682 QAELEKERQALKNALGKAQFSEEKEQ-----------ENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEV 750
Cdd:pfam15921 747 QSKIQFLEEAMTNANKEKHFLKEEKNklsqelstvatEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDI 826
|
570
....*....|...
gi 2217375254 751 AARVDELRRKLKL 763
Cdd:pfam15921 827 IQRQEQESVRLKL 839
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1553-1930 |
2.93e-06 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 52.20 E-value: 2.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1553 LLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLtlikqeiekeEENLQVVLRQM 1632
Cdd:pfam07888 31 LLQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEEL----------RQSREKHEELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1633 SKHKtELKNILDMLQLENHELQGLKLQHDQRVSELEktqvavleekleleNLQQISQQQKGEIEWQkqlLERDKREIERM 1712
Cdd:pfam07888 101 EKYK-ELSASSEELSEEKDALLAQRAAHEARIRELE--------------EDIKTLTQRVLERETE---LERMKERAKKA 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1713 TAESRALQScveclskEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKL---SL 1789
Cdd:pfam07888 163 GAQRKEEEA-------ERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAeneAL 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1790 HNDISAMQQQLQEKREAVNSLQEELANVqdhlnLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQ--KEEETKQ 1867
Cdd:pfam07888 236 LEELRSLQERLNASERKVEGLGEELSSM-----AAQRDRTQAELHQARLQAAQLTLQLADASLALREGRARwaQERETLQ 310
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217375254 1868 QQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKL 1930
Cdd:pfam07888 311 QSAEADKDRIEKLSAELQRLEERLQEERMEREKLEVELGREKDCNRVQLSESRRELQELKASL 373
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
566-999 |
3.00e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.46 E-value: 3.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 566 IMNKQYQQLESRLDEILSRIAKETEEIKDLEEqlTEGQIAANEALKKDLEGVISGLQEYLG--TIKGQATQAQNECRKLR 643
Cdd:COG4717 68 LNLKELKELEEELKEAEEKEEEYAELQEELEE--LEEELEELEAELEELREELEKLEKLLQllPLYQELEALEAELAELP 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 644 DEKETLLQRLTEVEQERDQLEIVAMDAENMRKLEQSALQAELEKERQALKNALGKAqfsEEKEQENSELHAKLKHLQDDN 723
Cdd:COG4717 146 ERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEEL---EELQQRLAELEEELEEAQEEL 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 724 NLLKQQLKDFQNHLnhvvdglvRPEEVAARVDELRRKLKLGTGEMNIHSPSDVLGKSLADLQK----------QFSEILA 793
Cdd:COG4717 223 EELEEELEQLENEL--------EAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGvlflvlgllaLLFLLLA 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 794 RSKWERDEAQVRERKLQEEMALQQEKLATGQEEFRqaCERALEARMNFDKRQHEARIQQMENEIHYLQENLK---SMEEI 870
Cdd:COG4717 295 REKASLGKEAEELQALPALEELEEEELEELLAALG--LPPDLSPEELLELLDRIEELQELLREAEELEEELQleeLEQEI 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 871 QGLTDLQLQEADEEKERILAQLREL-EKKKKLEDAKSQEQvfglDKELKKLKKAVATSDKLATAELTIAKDQLKSLHGTV 949
Cdd:COG4717 373 AALLAEAGVEDEEELRAALEQAEEYqELKEELEELEEQLE----ELLGELEELLEALDEEELEEELEELEEELEELEEEL 448
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 2217375254 950 MKINQERAEELQEaerfsRKAAQAARDLTRAEAEIELLQNLLRQKGEQFR 999
Cdd:COG4717 449 EELREELAELEAE-----LEQLEEDGELAELLQELEELKAELRELAEEWA 493
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1457-1966 |
3.41e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.37 E-value: 3.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1457 EEILKEINKIvaakDSDFQCLSKKKEKLTEELQKLQK---DIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQ 1533
Cdd:PRK03918 203 EEVLREINEI----SSELPELREELEKLEKEVKELEElkeEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEEL 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1534 QQEMAVLdRQLGHKKEELHLLQGSMVQAKADLQEaLRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTl 1613
Cdd:PRK03918 279 EEKVKEL-KELKEKAEEYIKLSEFYEEYLDELRE-IEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLE- 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1614 IKQEIEKEEENLQVVLRQMSKHKTELKNI-LDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQK 1692
Cdd:PRK03918 356 ELEERHELYEEAKAKKEELERLKKRLTGLtPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAK 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1693 GEI---------EWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLqEKCDIWEKKLAQTKRVLAAAEE-NSKMEQ 1762
Cdd:PRK03918 436 GKCpvcgrelteEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELREL-EKVLKKESELIKLKELAEQLKElEEKLKK 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1763 SNLEKLELN---VRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREavnsLQEELANVQDHL-NLAKQDLLHTTKHQDVL 1838
Cdd:PRK03918 515 YNLEELEKKaeeYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAE----LEKKLDELEEELaELLKELEELGFESVEEL 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1839 LSEQTRLQKDISEWaNRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKE--------RESEESKLETSKV 1910
Cdd:PRK03918 591 EERLKELEPFYNEY-LELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKEleelekkySEEEYEELREEYL 669
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 2217375254 1911 TLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKR 1966
Cdd:PRK03918 670 ELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEE 725
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
516-708 |
3.63e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 51.75 E-value: 3.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 516 ELQMEKQKQEIAGKQKEIKDLQIAIDSLDskdpkhshmkaqksgkeQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDL 595
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQ-----------------AELEELNEEYNELQAELEALQAEIDKLQAEIAEA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 596 EEQLTEGQIAANEALK------------------KDLEGVISGLqEYLGTIKGQAT----QAQNECRKLRDEKETLLQRL 653
Cdd:COG3883 78 EAEIEERREELGERARalyrsggsvsyldvllgsESFSDFLDRL-SALSKIADADAdlleELKADKAELEAKKAELEAKL 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2217375254 654 TEVEQERDQLEIVAMDAENmRKLEQSALQAELEKERQALKNALGKAQFSEEKEQE 708
Cdd:COG3883 157 AELEALKAELEAAKAELEA-QQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEA 210
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
435-601 |
4.18e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.69 E-value: 4.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 435 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEaiQLKKISEAGKDLLYK------------------ 496
Cdd:COG4942 53 LLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA--ELEAQKEELAELLRAlyrlgrqpplalllsped 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 497 --QLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSL-DSKDPKHSHMKAQKSGKEQQLDIMNKQYQQ 573
Cdd:COG4942 131 flDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALlAELEEERAALEALKAERQKLLARLEKELAE 210
|
170 180
....*....|....*....|....*...
gi 2217375254 574 LESRLDEILSRIAKETEEIKDLEEQLTE 601
Cdd:COG4942 211 LAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1796-2003 |
6.75e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 51.56 E-value: 6.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1796 MQQQLQEKREAVNS----LQEELANVQDHLNLAKQDLLH-TTKHQDVLLSEQTR-LQKDISEWANRFEDCQKEEETKQQQ 1869
Cdd:COG3206 162 LEQNLELRREEARKalefLEEQLPELRKELEEAEAALEEfRQKNGLVDLSEEAKlLLQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1870 LQVLQNEIEENKLKL--VQQEMMFQRLQKERESEESKLETSKVTLKEQqH----QLEKELTDQKSKLDQVLSKVLA-AEE 1942
Cdd:COG3206 242 LAALRAQLGSGPDALpeLLQSPVIQQLRAQLAELEAELAELSARYTPN-HpdviALRAQIAALRAQLQQEAQRILAsLEA 320
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217375254 1943 RVRTLQEEErwcESLEKTLSQTKRQLsereQQLVEKSGELLALQKEADSMRADFSLLRNQF 2003
Cdd:COG3206 321 ELEALQARE---ASLQAQLAQLEARL----AELPELEAELRRLEREVEVARELYESLLQRL 374
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1686-1993 |
7.71e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 51.28 E-value: 7.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1686 QISQQQKGEIEWQKQLlERDKREIERMTAESRALQSCVEclskEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNL 1765
Cdd:pfam17380 276 HIVQHQKAVSERQQQE-KFEKMEQERLRQEKEEKAREVE----RRRKLEEAEKARQAEMDRQAAIYAEQERMAMEREREL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1766 EKLELNVRKlqQELDQLNRDKLSLH----NDISAMQQQLQEKREAVNSLQEELANV-------QDHLNLAKQDLLHTTKH 1834
Cdd:pfam17380 351 ERIRQEERK--RELERIRQEEIAMEisrmRELERLQMERQQKNERVRQELEAARKVkileeerQRKIQQQKVEMEQIRAE 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1835 QDVLLSEQTRLQKDisEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEmmfqrlQKERESEESKLETSKVTLKE 1914
Cdd:pfam17380 429 QEEARQREVRRLEE--ERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELE------KEKRDRKRAEEQRRKILEKE 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1915 QQHQLEKELTDQKSKldQVLSKVLaaEERVRTLQEEERWCESLEKTLSQT----KRQLSEREQQLVEKSGELLALQKEAD 1990
Cdd:pfam17380 501 LEERKQAMIEEERKR--KLLEKEM--EERQKAIYEEERRREAEEERRKQQemeeRRRIQEQMRKATEERSRLEAMERERE 576
|
...
gi 2217375254 1991 SMR 1993
Cdd:pfam17380 577 MMR 579
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1261-2051 |
8.45e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.51 E-value: 8.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1261 NLENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVE 1340
Cdd:pfam02463 301 ELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKK 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1341 SLMTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEE 1420
Cdd:pfam02463 381 LESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKL 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1421 LERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAER 1500
Cdd:pfam02463 461 LKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVEN 540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1501 NEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELhllqgsmvqakadlqeaLRLGETEVTEKC 1580
Cdd:pfam02463 541 YKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPL-----------------KSIAVLEIDPIL 603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1581 NHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIekeeenlqVVLRQMSKHKTELKNILDMLQLENHELQGLKLQH 1660
Cdd:pfam02463 604 NLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESA--------KAKESGLRKGVSLEEGLAEKSEVKASLSELTKEL 675
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1661 DQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIW 1740
Cdd:pfam02463 676 LEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKS 755
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1741 EKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELdqlnrdklslhnDISAMQQQLQEKREAVNSLQEELANVQDH 1820
Cdd:pfam02463 756 RLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEE------------KLKAQEEELRALEEELKEEAELLEEEQLL 823
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1821 LNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANR-FEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERE 1899
Cdd:pfam02463 824 IEQEEKIKEEELEELALELKEEQKLEKLAEEELERlEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELE 903
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1900 SEESKletskvtlKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEKS 1979
Cdd:pfam02463 904 EESQK--------LNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKV 975
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217375254 1980 GELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSERDSSLLSKEQK 2051
Cdd:pfam02463 976 NLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKEFLELFVSINKGWNKVFFYLELGGSAE 1047
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1466-2162 |
8.85e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.17 E-value: 8.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1466 IVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLG 1545
Cdd:TIGR04523 27 IANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLS 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1546 HKKEELHLLQGSMVQAK---ADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEE 1622
Cdd:TIGR04523 107 KINSEIKNDKEQKNKLEvelNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQ 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1623 ENLQVVLRQMSKHKTELKNILDMLQLENH---ELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQK 1699
Cdd:TIGR04523 187 KNIDKIKNKLLKLELLLSNLKKKIQKNKSlesQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIK 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1700 QLLERDKREIERMTAESRALQSCVECLSKEKEDL-QEKCDIWEKKLaqtKRVLAAAEENSKMEQSNLEKLELNVRKLQQE 1778
Cdd:TIGR04523 267 KQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLnNQKEQDWNKEL---KSELKNQEKKLEEIQNQISQNNKIISQLNEQ 343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1779 LDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEElanvqdhlnlaKQDLLHTTKHqdvLLSEQTRLQKDISEWANRFED 1858
Cdd:TIGR04523 344 ISQLKKELTNSESENSEKQRELEEKQNEIEKLKKE-----------NQSYKQEIKN---LESQINDLESKIQNQEKLNQQ 409
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1859 CQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEE---SKLETSKVTLKEQQHQLEKELTDQKSKLDQVLS 1935
Cdd:TIGR04523 410 KDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKEliiKNLDNTRESLETQLKVLSRSINKIKQNLEQKQK 489
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1936 KVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQL----VEKSGELLALQKEADSMraDFSLLRNQFLTERKKAE 2011
Cdd:TIGR04523 490 ELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLesekKEKESKISDLEDELNKD--DFELKKENLEKEIDEKN 567
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2012 KQVASLKEALK-IQRSQLEKNLLTINEDSERD---SSLLSKEQKQEN-----SCIQKEMATIELVAQDNHERARRLMKEL 2082
Cdd:TIGR04523 568 KEIEELKQTQKsLKKKQEEKQELIDQKEKEKKdliKEIEEKEKKISSlekelEKAKKENEKLSSIIKNIKSKKNKLKQEV 647
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2083 NQMQYEYTELKKQMAN----QKDLERRQMEISDAMRTLKSEVKDEIRTSLKNLNQFlpelpADLEAILERNENLEGELES 2158
Cdd:TIGR04523 648 KQIKETIKEIRNKWPEiikkIKESKTKIDDIIELMKDWLKELSLHYKKYITRMIRI-----KDLPKLEEKYKEIEKELKK 722
|
....
gi 2217375254 2159 LKEN 2162
Cdd:TIGR04523 723 LDEF 726
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1764-1967 |
1.00e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 1.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1764 NLEKLELNVRKLQQELDQLNRdklslhndISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLhtTKHQDVLLSEQT 1843
Cdd:COG4913 236 DLERAHEALEDAREQIELLEP--------IRELAERYAAARERLAELEYLRAALRLWFAQRRLELL--EAELEELRAELA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1844 RLQKDISEWANRFEDCQKEEETKQQQ--------LQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEQ 1915
Cdd:COG4913 306 RLEAELERLEARLDALREELDELEAQirgnggdrLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAAL 385
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2217375254 1916 QHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERwceSLEKTLSQTKRQ 1967
Cdd:COG4913 386 RAEAAALLEALEEELEALEEALAEAEAALRDLRRELR---ELEAEIASLERR 434
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1287-1500 |
1.30e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 1.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1287 RASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESLMTEL-EIEKSLKHHEDIVDEieci 1365
Cdd:COG4942 33 QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIaELRAELEAQKEELAE---- 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1366 ektLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQT-ESDAEELERRAQETAVNLVKADQQLRSLQA 1444
Cdd:COG4942 109 ---LLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEElRADLAELAALRAELEAERAELEALLAELEE 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2217375254 1445 DAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAER 1500
Cdd:COG4942 186 ERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1262-1532 |
1.34e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.42 E-value: 1.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1262 LENEVSRLEDIMQHLKSKKREERWMR-------ASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDF 1334
Cdd:PRK02224 211 LESELAELDEEIERYEEQREQARETRdeadevlEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1335 IDGNVESLMTELEIEKSlkHHEDIVDEIEciekTLLKRRSELREAdrlLAEAESELSCTKEKTKNAVEKFTDAKRSLLQT 1414
Cdd:PRK02224 291 LEEERDDLLAEAGLDDA--DAEAVEARRE----ELEDRDEELRDR---LEECRVAAQAHNEEAESLREDADDLEERAEEL 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1415 ESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKD 1494
Cdd:PRK02224 362 REEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARER 441
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 2217375254 1495 IEMAER--------------NEDHHLQVLKESEVLLQAKRAELEKLKSQVTS 1532
Cdd:PRK02224 442 VEEAEAlleagkcpecgqpvEGSPHVETIEEDRERVEELEAELEDLEEEVEE 493
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1360-2157 |
1.63e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 50.56 E-value: 1.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1360 DEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQL 1439
Cdd:pfam01576 12 EELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEILHELESRLEEEEERS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1440 RSLQADAKDLEQHKIKQEEILKEinkivaaKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHhlqvlkesevlLQAK 1519
Cdd:pfam01576 92 QQLQNEKKKMQQHIQDLEEQLDE-------EEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSK-----------LSKE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1520 RAELEKLKSQVTSQQQEMAvldrqlgHKKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGE 1599
Cdd:pfam01576 154 RKLLEERISEFTSNLAEEE-------EKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAE 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1600 LNVQISERKTQLtlikqeiekeeenlqvvlrqmSKHKTELKNILDMLQLEnhelQGLKLQHDQRVSELEktqvavleekl 1679
Cdd:pfam01576 227 LQAQIAELRAQL---------------------AKKEEELQAALARLEEE----TAQKNNALKKIRELE----------- 270
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1680 elenlQQISQQQKGeiewqkqlLERDKREIERMTAESRALQSCVECLSKEKEDL-------QEKCDIWEKKLAQTKRVLa 1752
Cdd:pfam01576 271 -----AQISELQED--------LESERAARNKAEKQRRDLGEELEALKTELEDTldttaaqQELRSKREQEVTELKKAL- 336
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1753 aaEENSKMEQSNLEKLELN----VRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEelanvqdhlnlAKQDL 1828
Cdd:pfam01576 337 --EEETRSHEAQLQEMRQKhtqaLEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQ-----------AKQDS 403
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1829 LHTTKhqdvllseqtRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETS 1908
Cdd:pfam01576 404 EHKRK----------KLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDT 473
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1909 KVTLKEQqhqlekelTDQKSKLDqvlSKVLAAEERVRTLQ----EEERWCESLEKTLSQTKRQLSEREQQLVEKSGELLA 1984
Cdd:pfam01576 474 QELLQEE--------TRQKLNLS---TRLRQLEDERNSLQeqleEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEA 542
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1985 LQKEADSMRADFSLLRNQFlterkkAEKQVASLKEALKIQRSQLEKNLLTINEDSERD-SSLLSKEQKQENSCIQKEMAt 2063
Cdd:pfam01576 543 LEEGKKRLQRELEALTQQL------EEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQlVSNLEKKQKKFDQMLAEEKA- 615
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2064 IELVAQDNHERARRLMKELNQMQYEYT-ELKKQMANQKDLERRQMEISDAMRTLKSEvKDEIRTSLKNLNQFLPELPADL 2142
Cdd:pfam01576 616 ISARYAEERDRAEAEAREKETRALSLArALEEALEAKEELERTNKQLRAEMEDLVSS-KDDVGKNVHELERSKRALEQQV 694
|
810
....*....|....*
gi 2217375254 2143 EAILERNENLEGELE 2157
Cdd:pfam01576 695 EEMKTQLEELEDELQ 709
|
|
| LRR_4 |
pfam12799 |
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ... |
126-167 |
1.68e-05 |
|
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.
Pssm-ID: 463713 [Multi-domain] Cd Length: 44 Bit Score: 43.77 E-value: 1.68e-05
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 2217375254 126 KLEVLNLSYNLIGKIEKLDKLLKLRELNLSYN-KISKIEGIEN 167
Cdd:pfam12799 2 NLEVLDLSNNQITDIPPLAKLPNLETLDLSGNnKITDLSDLAN 44
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1413-1610 |
1.88e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 1.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1413 QTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQ 1492
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1493 KDIE-----MAERNEDHHLQVLKESEVLLQAKRAeLEKLKSQVTSQQQEMAVLDRQLghkkEELHLLQGSMVQAKADLQE 1567
Cdd:COG4942 104 EELAellraLYRLGRQPPLALLLSPEDFLDAVRR-LQYLKYLAPARREQAEELRADL----AELAALRAELEAERAELEA 178
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2217375254 1568 ALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQ 1610
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1726-2163 |
2.78e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.63 E-value: 2.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1726 LSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKRE 1805
Cdd:TIGR04523 38 LEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKE 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1806 AVNSLQEELANVqdhlnlaKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIE--ENKLK 1883
Cdd:TIGR04523 118 QKNKLEVELNKL-------EKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLniQKNID 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1884 LVQQEMMFQRLQ----KERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEE----RWCE 1955
Cdd:TIGR04523 191 KIKNKLLKLELLlsnlKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQnkikKQLS 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1956 SLEKTLSQTKRQLSEREQQLVEKSGELLAL--QKEADSMRADFSLLRNQ------FLTERKKAEKQVASLKEA---LKIQ 2024
Cdd:TIGR04523 271 EKQKELEQNNKKIKELEKQLNQLKSEISDLnnQKEQDWNKELKSELKNQekkleeIQNQISQNNKIISQLNEQisqLKKE 350
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2025 RSQLEKNLLTINEDSERDSSLLSKEQKQENSCIQK------EMATIELVAQDNHERARRLMKELNQMQYEYTELKKQman 2098
Cdd:TIGR04523 351 LTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEiknlesQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKE--- 427
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217375254 2099 QKDLERRQMEISDAMRTLKSEvKDEIRTSLKNLNQFLPELPADLEAILERNENLEGELESLKENL 2163
Cdd:TIGR04523 428 IERLKETIIKNNSEIKDLTNQ-DSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKEL 491
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1365-2110 |
3.00e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.58 E-value: 3.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1365 IEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQA 1444
Cdd:TIGR00618 188 KKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRA 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1445 DAKDLEQHKIKQEEILKEINkivaakdsdfqcLSKKKEKLTEElqklQKDIEMAERNEDHHLQVLKESEVLLQAKRAELE 1524
Cdd:TIGR00618 268 RIEELRAQEAVLEETQERIN------------RARKAAPLAAH----IKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRA 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1525 KLKSQVTSQQQEMAVLDRQLghkKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHIREVksLLEELSFQKGELNVQI 1604
Cdd:TIGR00618 332 AHVKQQSSIEEQRRLLQTLH---SQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTT--LTQKLQSLCKELDILQ 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1605 SERKTQLTLIKQEIEKEeenlQVVLRQMSKHKTELKNILDMLQLENHELQGLKlqhdQRVSELEKTQVAVLEEKLELENL 1684
Cdd:TIGR00618 407 REQATIDTRTSAFRDLQ----GQLAHAKKQQELQQRYAELCAAAITCTAQCEK----LEKIHLQESAQSLKEREQQLQTK 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1685 QQISQQqkgeiewqkqllERDKREIERMTAESRALQSCVECLSkEKEDLQEKCDIWEKKlAQTKRVLAAAEENSKMEQSn 1764
Cdd:TIGR00618 479 EQIHLQ------------ETRKKAVVLARLLELQEEPCPLCGS-CIHPNPARQDIDNPG-PLTRRMQRGEQTYAQLETS- 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1765 leklelnVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTR 1844
Cdd:TIGR00618 544 -------EEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHA 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1845 LQKDISEWANRFEDCQkEEETKQQQLQVLQNEIEENKLKLVQQEMMfQRLQKERESEESKLETSKVTLKEQQHQLEkELT 1924
Cdd:TIGR00618 617 LLRKLQPEQDLQDVRL-HLQQCSQELALKLTALHALQLTLTQERVR-EHALSIRVLPKELLASRQLALQKMQSEKE-QLT 693
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1925 DQKSKLDQVLSKVLAAEERVRTLqeeERWCESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFL 2004
Cdd:TIGR00618 694 YWKEMLAQCQTLLRELETHIEEY---DREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEV 770
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2005 TERKKAEKQVASLKEALKIQRSQLEknlltinEDSERDSSLLSKEQKQENSCIQKEMATIELVAQDN---HERARRLMKE 2081
Cdd:TIGR00618 771 TAALQTGAELSHLAAEIQFFNRLRE-------EDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEeqfLSRLEEKSAT 843
|
730 740
....*....|....*....|....*....
gi 2217375254 2082 LNQMQYEYTELKKQMANQKDLERRQMEIS 2110
Cdd:TIGR00618 844 LGEITHQLLKYEECSKQLAQLTQEQAKII 872
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
270-791 |
3.03e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.25 E-value: 3.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 270 EEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSLKEEAMLQKQSCEELKSDLNT--KNELLKQKTIELTracq 347
Cdd:TIGR04523 117 EQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLleKEKLNIQKNIDKI---- 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 348 KQYELEQELAFYKIDAKFEPLNYYPSEYAEIDKapdespyigksrykrnmfaTESYIIDSAQAVQIKKMEPDEQLRNDHM 427
Cdd:TIGR04523 193 KNKLLKLELLLSNLKKKIQKNKSLESQISELKK-------------------QNNQLKDNIEKKQQEINEKTTEISNTQT 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 428 NLRG----HTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQIL-----RATEEFKQLEEAI--QLKKISEAGKDLLY- 495
Cdd:TIGR04523 254 QLNQlkdeQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISdlnnqKEQDWNKELKSELknQEKKLEEIQNQISQn 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 496 -KQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSL-----------DSKDPKHSHMKAQKSGKEQQ 563
Cdd:TIGR04523 334 nKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYkqeiknlesqiNDLESKIQNQEKLNQQKDEQ 413
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 564 LDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANEALK---------KDLEGVISGLQEYLGTIKGQATQ 634
Cdd:TIGR04523 414 IKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNtresletqlKVLSRSINKIKQNLEQKQKELKS 493
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 635 AQNECRKLRDEKETLLQRLTEVEQERDQL--EIVAMDAENMRK-LEQSALQAELEKERQALKNALGKAQFSeEKEQENSE 711
Cdd:TIGR04523 494 KEKELKKLNEEKKELEEKVKDLTKKISSLkeKIEKLESEKKEKeSKISDLEDELNKDDFELKKENLEKEID-EKNKEIEE 572
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 712 LHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLvrpEEVAARVDELRRKL--------KLGTGEMNIHSPSDVLGKSLAD 783
Cdd:TIGR04523 573 LKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEI---EEKEKKISSLEKELekakkeneKLSSIIKNIKSKKNKLKQEVKQ 649
|
....*...
gi 2217375254 784 LQKQFSEI 791
Cdd:TIGR04523 650 IKETIKEI 657
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1805-2010 |
3.04e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 3.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1805 EAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKL 1884
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1885 VQQE-----------------------------------MMFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSK 1929
Cdd:COG4942 100 EAQKeelaellralyrlgrqpplalllspedfldavrrlQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1930 LDQvlskvlaaeervrtlQEEERwcESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKK 2009
Cdd:COG4942 180 LAE---------------LEEER--AALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
.
gi 2217375254 2010 A 2010
Cdd:COG4942 243 T 243
|
|
| LRR_4 |
pfam12799 |
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ... |
148-179 |
3.09e-05 |
|
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.
Pssm-ID: 463713 [Multi-domain] Cd Length: 44 Bit Score: 43.00 E-value: 3.09e-05
10 20 30
....*....|....*....|....*....|..
gi 2217375254 148 KLRELNLSYNKISKIEGIENMCNLQKLNLAGN 179
Cdd:pfam12799 2 NLEVLDLSNNQITDIPPLAKLPNLETLDLSGN 33
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1360-1570 |
3.81e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 3.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1360 DEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQL 1439
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1440 RSLQADAKDL--EQHKIKQEEILKEINKIVAAKDS--DFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVL 1515
Cdd:COG4942 100 EAQKEELAELlrALYRLGRQPPLALLLSPEDFLDAvrRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2217375254 1516 LQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQgsmvQAKADLQEALR 1570
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQ----QEAEELEALIA 230
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1479-2065 |
4.61e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.91 E-value: 4.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1479 KKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVtsqqQEMAVLDRQLGHKKEELHLLQGSM 1558
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEV----KELEELKEEIEELEKELESLEGSK 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1559 VQAKADLQEalrlgetevTEKcnHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIekeeeNLQVVLRQMSKHKTE 1638
Cdd:PRK03918 255 RKLEEKIRE---------LEE--RIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYE-----EYLDELREIEKRLSR 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1639 LKNILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMtaesra 1718
Cdd:PRK03918 319 LEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKE------ 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1719 lqscVECLSKEKEDLQEKcdiwEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKL--SLHNDISAM 1796
Cdd:PRK03918 393 ----LEELEKAKEEIEEE----ISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELleEYTAELKRI 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1797 QQQLQEKREAVNSLQEELANVQDHLNLAKQdLLHTTKHQDVLLSEQTRLQK----DISEWANRFEDCQKEEETKQQQLQV 1872
Cdd:PRK03918 465 EKELKEIEEKERKLRKELRELEKVLKKESE-LIKLKELAEQLKELEEKLKKynleELEKKAEEYEKLKEKLIKLKGEIKS 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1873 LQNEIEENKLklvqqemmfqrLQKERESEESKLETSKVTLKEQQHQLE-------KELTDQKSKLDQVLSKVLAAEERVR 1945
Cdd:PRK03918 544 LKKELEKLEE-----------LKKKLAELEKKLDELEEELAELLKELEelgfesvEELEERLKELEPFYNEYLELKDAEK 612
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1946 TLQEEERWCESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADsmRADFSLLRNQFLTERKKAEKQVASLKEaLKIQR 2025
Cdd:PRK03918 613 ELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYS--EEEYEELREEYLELSRELAGLRAELEE-LEKRR 689
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 2217375254 2026 SQLEKNLLTINEDSERdssllSKEQKQENSCIQKEMATIE 2065
Cdd:PRK03918 690 EEIKKTLEKLKEELEE-----REKAKKELEKLEKALERVE 724
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1698-1952 |
5.61e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 48.75 E-value: 5.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1698 QKQLLERDKREIErmTAESRALQSCVEclskEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLE-------- 1769
Cdd:PRK11281 42 QAQLDALNKQKLL--EAEDKLVQQDLE----QTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKddndeetr 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1770 -----LNVRKLQQELDQLNRDKLSLHND---------------------ISAMQQQLQEKREAVNSLQEElanvQDHLNL 1823
Cdd:PRK11281 116 etlstLSLRQLESRLAQTLDQLQNAQNDlaeynsqlvslqtqperaqaaLYANSQRLQQIRNLLKGGKVG----GKALRP 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1824 AKQDLLHTtkhQDVLLSEQTRLQKDISEWANRFEDC---QKEEETK-----QQQLQVLQNEIEENKLKLVQQEMMfqrlQ 1895
Cdd:PRK11281 192 SQRVLLQA---EQALLNAQNDLQRKSLEGNTQLQDLlqkQRDYLTAriqrlEHQLQLLQEAINSKRLTLSEKTVQ----E 264
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 2217375254 1896 KERESEESKLETSKVTLKEQQ--HQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEER 1952
Cdd:PRK11281 265 AQSQDEAARIQANPLVAQELEinLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSER 323
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
438-693 |
5.67e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.53 E-value: 5.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 438 QLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAI---------QLKKISEAGKDLLYKQLSGRLQLVNKL 508
Cdd:TIGR02169 738 RLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALndlearlshSRIPEIQAELSKLEEEVSRIEARLREI 817
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 509 RQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDpkhSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKE 588
Cdd:TIGR02169 818 EQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI---ENLNGKKEELEEELEELEAALRDLESRLGDLKKERDEL 894
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 589 TEEIKDLEEQLTEGQIAANEALK--KDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEkETLLQRLTEVEQERDQLEIV 666
Cdd:TIGR02169 895 EAQLRELERKIEELEAQIEKKRKrlSELKAKLEALEEELSEIEDPKGEDEEIPEEELSL-EDVQAELQRVEEEIRALEPV 973
|
250 260 270
....*....|....*....|....*....|...
gi 2217375254 667 AMDAEN------MRKLEQSALQAELEKERQALK 693
Cdd:TIGR02169 974 NMLAIQeyeevlKRLDELKEKRAKLEEERKAIL 1006
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1262-1814 |
8.28e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 47.97 E-value: 8.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1262 LENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVES 1341
Cdd:PRK01156 164 LERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1342 LMTELEIEKslKHHEDIvdeiecieKTLLKRRSELREADRLLAEAESELsctKEKTKNAVEKFTDAKRSLLQTESDAEEL 1421
Cdd:PRK01156 244 LSSLEDMKN--RYESEI--------KTAESDLSMELEKNNYYKELEERH---MKIINDPVYKNRNYINDYFKYKNDIENK 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1422 ERRAQETAVNLVKAD---QQLRSLQADAKDLEQHKIKQEEILKEINKIvAAKDSDFQCLSKKKEKLTEELQKLQKDIEMA 1498
Cdd:PRK01156 311 KQILSNIDAEINKYHaiiKKLSVLQKDYNDYIKKKSRYDDLNNQILEL-EGYEMDYNSYLKSIESLKKKIEEYSKNIERM 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1499 ERNEDHHLQVLKESEVLLQAKRAE----LEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKAdlqeALRLGET 1574
Cdd:PRK01156 390 SAFISEILKIQEIDPDAIKKELNEinvkLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVC----GTTLGEE 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1575 EVTEKCNHIREVKSLLEE-LSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDML-QLENHE 1652
Cdd:PRK01156 466 KSNHIINHYNEKKSRLEEkIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKInELKDKH 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1653 LQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQIS----QQQKGEIEWQKQLLERDKREIE---------------RMT 1713
Cdd:PRK01156 546 DKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDietnRSRSNEIKKQLNDLESRLQEIEigfpddksyidksirEIE 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1714 AESRALQSCVECLSKEK---EDLQEKCDIWEKKLAQTKRVlaaaEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLH 1790
Cdd:PRK01156 626 NEANNLNNKYNEIQENKiliEKLRGKIDNYKKQIAEIDSI----IPDLKEITSRINDIEDNLKKSRKALDDAKANRARLE 701
|
570 580
....*....|....*....|....
gi 2217375254 1791 NDISAMQQQLQEKREAVNSLQEEL 1814
Cdd:PRK01156 702 STIEILRTRINELSDRINDINETL 725
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
435-900 |
8.74e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.71 E-value: 8.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 435 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDLLYKQLsgrlqlvNKLRQEALD 514
Cdd:TIGR04523 157 LNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQI-------SELKKQNNQ 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 515 LELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKdpkHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIA-----KET 589
Cdd:TIGR04523 230 LKDNIEKKQQEINEKTTEISNTQTQLNQLKDE---QNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISdlnnqKEQ 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 590 EEIKDLEEQL---------TEGQIAANEALKKDLEGVISGLQEYLG-------TIKGQATQAQNECRKLRDEKETLLQRL 653
Cdd:TIGR04523 307 DWNKELKSELknqekkleeIQNQISQNNKIISQLNEQISQLKKELTnsesensEKQRELEEKQNEIEKLKKENQSYKQEI 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 654 TEVEQERDQLEIVAMDAENMRKLEQSALQA------ELEKERQALKNALGKAQFS-EEKEQENSELHAKLKHLQDDNNLL 726
Cdd:TIGR04523 387 KNLESQINDLESKIQNQEKLNQQKDEQIKKlqqekeLLEKEIERLKETIIKNNSEiKDLTNQDSVKELIIKNLDNTRESL 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 727 KQQLKDFQNHLNHVVDGLvrpeevaarvDELRRKLKLGTGEMN-IHSPSDVLGKSLADLQKQFSEILARSKWERDEAQVR 805
Cdd:TIGR04523 467 ETQLKVLSRSINKIKQNL----------EQKQKELKSKEKELKkLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEK 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 806 ERKLQE--------EMALQQEKLATGQEEFRQACERALEARMNFDKRQHEA--RIQQMENEIHYLQENLKSMEEIQGLTD 875
Cdd:TIGR04523 537 ESKISDledelnkdDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKqeLIDQKEKEKKDLIKEIEEKEKKISSLE 616
|
490 500
....*....|....*....|....*
gi 2217375254 876 LQLQEADEEKERILAQLRELEKKKK 900
Cdd:TIGR04523 617 KELEKAKKENEKLSSIIKNIKSKKN 641
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1860-2030 |
1.19e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.32 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1860 QKEEETkQQQLQVLQNEIEENKLKLVQQEMMFQRLQKER-----ESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVL 1934
Cdd:COG3206 168 LRREEA-RKALEFLEEQLPELRKELEEAEAALEEFRQKNglvdlSEEAKLLLQQLSELESQLAEARAELAEAEARLAALR 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1935 SKVLAAEERVRTLQEEERWcESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFL----TERKKA 2010
Cdd:COG3206 247 AQLGSGPDALPELLQSPVI-QQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILasleAELEAL 325
|
170 180
....*....|....*....|
gi 2217375254 2011 EKQVASLKEALKIQRSQLEK 2030
Cdd:COG3206 326 QAREASLQAQLAQLEARLAE 345
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1659-1879 |
1.20e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 1.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1659 QHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCD 1738
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1739 IWEKKLAQTKRVLAAAEENSKME----QSNLEKLELNVRKLQqeldQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEEL 1814
Cdd:COG4942 101 AQKEELAELLRALYRLGRQPPLAlllsPEDFLDAVRRLQYLK----YLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217375254 1815 ANVQDHLNLAKQDLLHTTKHQDVLLseqTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEE 1879
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLL---ARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
482-720 |
1.22e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 482 QLKKISEAGKDL--LYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDskdpkhshmkAQKSG 559
Cdd:COG4942 18 QADAAAEAEAELeqLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALE----------AELAE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 560 KEQQLDIMNKQYQQLESRLDEILSRIAKeTEEIKDLEEQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNEC 639
Cdd:COG4942 88 LEKEIAELRAELEAQKEELAELLRALYR-LGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 640 RKLRDEKETLLQRLTEVEQERDQLEivamdaenMRKLEQSALQAELEKERQALKNALgkaqfsEEKEQENSELHAKLKHL 719
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALE--------ALKAERQKLLARLEKELAELAAEL------AELQQEAEELEALIARL 232
|
.
gi 2217375254 720 Q 720
Cdd:COG4942 233 E 233
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1624-2163 |
1.27e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.37 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1624 NLQVVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEeklelenlqqiSQQQKGEIEWQKQLLE 1703
Cdd:PRK03918 190 NIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEE-----------LEKELESLEGSKRKLE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1704 RDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKkLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLN 1783
Cdd:PRK03918 259 EKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIK-LSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1784 RDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEE 1863
Cdd:PRK03918 338 ERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGEL 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1864 ETKQQQLQVLQNEIEENKLKL-----VQQEMMFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDqkskldqvLSKVL 1938
Cdd:PRK03918 418 KKEIKELKKAIEELKKAKGKCpvcgrELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRE--------LEKVL 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1939 AAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEK-SGELLALQKEADSMRADFSLLrNQFLTERKKAEKQVASL 2017
Cdd:PRK03918 490 KKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKlKEKLIKLKGEIKSLKKELEKL-EELKKKLAELEKKLDEL 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2018 KEALK-IQRSQLEKNLLTINEDSERDSSLLSKEQKQensciqkematIELVAQDnheraRRLMKELNQMQYEYTELKKQM 2096
Cdd:PRK03918 569 EEELAeLLKELEELGFESVEELEERLKELEPFYNEY-----------LELKDAE-----KELEREEKELKKLEEELDKAF 632
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2217375254 2097 ANQKDLERRQMEISDAMRTLKSEVKDEIRTSLKNLNQFLPELPADLEAILERNENLEGELESLKENL 2163
Cdd:PRK03918 633 EELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKL 699
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1755-2131 |
1.51e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 47.21 E-value: 1.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1755 EENSKMEQSNLEK-LEL--NVRKLQQELDQLNRDklslhndISAMQQQLQEKREAVNSLQEELANV--QDHLNLAKQDLl 1829
Cdd:PRK11281 55 EAEDKLVQQDLEQtLALldKIDRQKEETEQLKQQ-------LAQAPAKLRQAQAELEALKDDNDEEtrETLSTLSLRQL- 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1830 htTKHQDVLLSEQTRLQKDISEwANrfedcqKEEETKQQQLQVLQNEIEENKlklvqqemmfQRLQKERESEESKLETSK 1909
Cdd:PRK11281 127 --ESRLAQTLDQLQNAQNDLAE-YN------SQLVSLQTQPERAQAALYANS----------QRLQQIRNLLKGGKVGGK 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1910 VTLKEQQHQLEKELT--DQKSKLDQvlsKVLAAEErvrTLQEeerwceslektLSQTKRQLSEREQQLVEKsgELLALQk 1987
Cdd:PRK11281 188 ALRPSQRVLLQAEQAllNAQNDLQR---KSLEGNT---QLQD-----------LLQKQRDYLTARIQRLEH--QLQLLQ- 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1988 eadsmradfSLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLTINED-SERdsslLSKEQKQENSCIQKEMATIEL 2066
Cdd:PRK11281 248 ---------EAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQlSQR----LLKATEKLNTLTQQNLRVKNW 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2067 VaqDNHERARRLMKE--------------LNQMQYEYTELK--KQMANQ-KDLERRQMEIS--------------DAMRT 2115
Cdd:PRK11281 315 L--DRLTQSERNIKEqisvlkgslllsriLYQQQQALPSADliEGLADRiADLRLEQFEINqqrdalfqpdayidKLEAG 392
|
410
....*....|....*.
gi 2217375254 2116 LKSEVKDEIRTSLKNL 2131
Cdd:PRK11281 393 HKSEVTDEVRDALLQL 408
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
170-220 |
1.65e-04 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 41.36 E-value: 1.65e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 2217375254 170 NLQKLNLAGNEIEHIPVWLGKKLKSLRVLNLKGNKISSL--QDISKLKPLQDL 220
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLspGAFSGLPSLRYL 54
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
611-849 |
1.73e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 1.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 611 KKDLEGVISGLQEYLGTIKGqatqAQNECRKLRdEKETLLQRLTEVEQERDQLEIVAMDAENMR--------KLEQSALQ 682
Cdd:COG4913 220 EPDTFEAADALVEHFDDLER----AHEALEDAR-EQIELLEPIRELAERYAAARERLAELEYLRaalrlwfaQRRLELLE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 683 AELEKERQALKNALGKAQFSEEKEQENSELHAKLKHLQDDNNLlkQQLKDFQNHLNHVVDGLVRPEEVAARVDELRRKLK 762
Cdd:COG4913 295 AELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGG--DRLEQLEREIERLERELEERERRRARLEALLAALG 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 763 LgtgemnihspsdvlgkSLADLQKQFSEILARSKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACE--RALEAR-M 839
Cdd:COG4913 373 L----------------PLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAeiASLERRkS 436
|
250
....*....|
gi 2217375254 840 NFDKRQHEAR 849
Cdd:COG4913 437 NIPARLLALR 446
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1467-1716 |
1.77e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 1.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1467 VAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGH 1546
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1547 KKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTlikqeiekeeeNLQ 1626
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLA-----------ELA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1627 VVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQvavleekleLENLQQISQQQKGEIEWQKQL--LER 1704
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKEL---------AELAAELAELQQEAEELEALIarLEA 234
|
250
....*....|..
gi 2217375254 1705 DKREIERMTAES 1716
Cdd:COG4942 235 EAAAAAERTPAA 246
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
261-1040 |
1.88e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.04 E-value: 1.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 261 QEAFERFsLEEVERLERDLEKKMIETEELKSKQTRFLEE--IKNQDKLNK-SLKEEAML-----QKQSCEELKSDL-NTK 331
Cdd:pfam15921 73 KEHIERV-LEEYSHQVKDLQRRLNESNELHEKQKFYLRQsvIDLQTKLQEmQMERDAMAdirrrESQSQEDLRNQLqNTV 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 332 NELLKQKTIELTRACQKQYELEQelaFYKIDAKFEP-LNYYPSEYAEIDKAPdespyiGKSRYKRNMFATESYiidSAQA 410
Cdd:pfam15921 152 HELEAAKCLKEDMLEDSNTQIEQ---LRKMMLSHEGvLQEIRSILVDFEEAS------GKKIYEHDSMSTMHF---RSLG 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 411 VQIKKMEpdEQLRNDHMNLRGHT-PLDTQLED-KEKKISAAQTRLSELHDEIEKA----EQQILRATEEFKQLEEAI--- 481
Cdd:pfam15921 220 SAISKIL--RELDTEISYLKGRIfPVEDQLEAlKSESQNKIELLLQQHQDRIEQLisehEVEITGLTEKASSARSQAnsi 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 482 --QLKKISEAGKD---LLYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAgkqkeiKDLQIAIDSLDSKDPKHSHMkAQ 556
Cdd:pfam15921 298 qsQLEIIQEQARNqnsMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELE------KQLVLANSELTEARTERDQF-SQ 370
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 557 KSGKeqqldiMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANEaLKKDLEGVISGLQEYLGTIKGQATQAQ 636
Cdd:pfam15921 371 ESGN------LDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDH-LRRELDDRNMEVQRLEALLKAMKSECQ 443
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 637 NECRKLRDEKETLLQRLTEVEQERDQLEIVAmdaENMRKL--EQSALQAELEKERQALKNALGKAQfseEKEQENSELHA 714
Cdd:pfam15921 444 GQMERQMAAIQGKNESLEKVSSLTAQLESTK---EMLRKVveELTAKKMTLESSERTVSDLTASLQ---EKERAIEATNA 517
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 715 KLKHLQDDNNLLKQQLKDFQNHLNHVvdglvrpEEVAARVDELRRKLklgtgemnihSPSDVLGKSLADLQKQFSEILAR 794
Cdd:pfam15921 518 EITKLRSRVDLKLQELQHLKNEGDHL-------RNVQTECEALKLQM----------AEKDKVIEILRQQIENMTQLVGQ 580
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 795 SKWERDEAQVRERKLQEEMALQQEKLatgqEEFRqacerALEARMNFDKRQHEARIQQMENE----IHYLQENLKSMEEI 870
Cdd:pfam15921 581 HGRTAGAMQVEKAQLEKEINDRRLEL----QEFK-----ILKDKKDAKIRELEARVSDLELEkvklVNAGSERLRAVKDI 651
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 871 QGLTDLQLQEADEEKERILAQLRELEKKKKLEDAKSQEQvfgldkelKKLKKAVATSDKLATAELTIAKDQLKSLHGT-- 948
Cdd:pfam15921 652 KQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEM--------ETTTNKLKMQLKSAQSELEQTRNTLKSMEGSdg 723
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 949 -----VMKINQERAEELQEAERFSRKAAQAARDLTRAEAEIELLqnllrqKGEQFRLEMEKTGVGTGANSQVLEIEKLNE 1023
Cdd:pfam15921 724 hamkvAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFL------KEEKNKLSQELSTVATEKNKMAGELEVLRS 797
|
810
....*....|....*..
gi 2217375254 1024 TMERQRTEIARLQNVLD 1040
Cdd:pfam15921 798 QERRLKEKVANMEVALD 814
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
76-205 |
1.93e-04 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 46.32 E-value: 1.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 76 SHAGVRYITEALikkltkQDNLALiKSLNLSLSKDGGKKFKYI-ENLEKCVKLEVLNLSYNLIGK------IEKLDKLLK 148
Cdd:COG5238 277 GAEGAIALAKAL------QGNTTL-TSLDLSVNRIGDEGAIALaEGLQGNKTLHTLNLAYNGIGAqgaialAKALQENTT 349
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217375254 149 LRELNLSYNKISK------IEGIENMCNLQKLNLAGNEI-EHIPVWLGKKLK--SLRVLNLKGNKI 205
Cdd:COG5238 350 LHSLDLSDNQIGDegaialAKYLEGNTTLRELNLGKNNIgKQGAEALIDALQtnRLHTLILDGNLI 415
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
1703-1933 |
2.16e-04 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 45.96 E-value: 2.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1703 ERDKReIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRV--LAAAEENSKMEQSNLEKLELNVRKLQQELD 1780
Cdd:pfam15905 91 EQDKR-LQALEEELEKVEAKLNAAVREKTSLSASVASLEKQLLELTRVneLLKAKFSEDGTQKKMSSLSMELMKLRNKLE 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1781 QLNRDKLSLHNDisaMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQ 1860
Cdd:pfam15905 170 AKMKEVMAKQEG---MEGKLQVTQKNLEHSKGKVAQLEEKLVSTEKEKIEEKSETEKLLEYITELSCVSEQVEKYKLDIA 246
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217375254 1861 KEEET---KQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKvtlKEQQHQLEKELTDQKSKLDQV 1933
Cdd:pfam15905 247 QLEELlkeKNDEIESLKQSLEEKEQELSKQIKDLNEKCKLLESEKEELLREY---EEKEQTLNAELEELKEKLTLE 319
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1765-1923 |
2.39e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.92 E-value: 2.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1765 LEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLS--EQ 1842
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNnkEY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1843 TRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEQQHQLEKE 1922
Cdd:COG1579 92 EALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAK 171
|
.
gi 2217375254 1923 L 1923
Cdd:COG1579 172 I 172
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1290-1542 |
2.60e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.16 E-value: 2.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1290 KRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESlmteleiekslkhhEDIVDEIECIEKTL 1369
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEA--------------KLLLQQLSELESQL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1370 LKRRSELREADRLLAEAESELSCTKEKTKNAVEK--FTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQAdak 1447
Cdd:COG3206 229 AEARAELAEAEARLAALRAQLGSGPDALPELLQSpvIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRA--- 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1448 dleqhkikqeEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEV---LLQAKRAELE 1524
Cdd:COG3206 306 ----------QLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVareLYESLLQRLE 375
|
250
....*....|....*...
gi 2217375254 1525 KLKSQVTSQQQEMAVLDR 1542
Cdd:COG3206 376 EARLAEALTVGNVRVIDP 393
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
1698-2121 |
2.65e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 46.35 E-value: 2.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1698 QKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEK-KLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQ 1776
Cdd:pfam10174 174 KKSGEEDWERTRRIAEAEMQLGHLEVLLDQKEKENIHLREELHRRnQLQPDPAKTKALQTVIEMKDTKISSLERNIRDLE 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1777 QELDQLNrdklslHNDISAMQQQLQEKR--EAVNSLQEELANVQDHLnlaKQDLlhtTKHQDVLLSEQTRLQKdiseWAN 1854
Cdd:pfam10174 254 DEVQMLK------TNGLLHTEDREEEIKqmEVYKSHSKFMKNKIDQL---KQEL---SKKESELLALQTKLET----LTN 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1855 RFEDCQKEEE-------TKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESeeskletskvtLKEQQHQLEKELTDQK 1927
Cdd:pfam10174 318 QNSDCKQHIEvlkesltAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQD-----------LTEEKSTLAGEIRDLK 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1928 SKLDQVLSKVLAAEERVRTLQEE-----------ERWCESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSmradf 1996
Cdd:pfam10174 387 DMLDVKERKINVLQKKIENLQEQlrdkdkqlaglKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQRER----- 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1997 slLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSERDSSLLSKEQKQENSCIQKEMATielvaQDNHERAR 2076
Cdd:pfam10174 462 --EDRERLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAV-----EQKKEECS 534
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 2217375254 2077 RLMKELNQMQyeytelkkqmaNQKDLERRQMEISDAMRTLKSEVK 2121
Cdd:pfam10174 535 KLENQLKKAH-----------NAEEAVRTNPEINDRIRLLEQEVA 568
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
270-597 |
2.65e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 2.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 270 EEVERLERDLEKKMIETEELK----------SKQTRFLEEIKNQDKLnksLKEEAMLQKQSCEELKSDlntknelLKQKT 339
Cdd:TIGR02169 681 ERLEGLKRELSSLQSELRRIEnrldelsqelSDASRKIGEIEKEIEQ---LEQEEEKLKERLEELEED-------LSSLE 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 340 IELTRACQKQYELEQElafykIDAKFEPLNYYPSEYAEIDKAPDESPYIGKSRYKRNMFATESYIIDSAQAVQ--IKKME 417
Cdd:TIGR02169 751 QEIENVKSELKELEAR-----IEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEqkLNRLT 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 418 PDEQLRNDHMN--LRGHTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEeaiqlKKISEAGKDLly 495
Cdd:TIGR02169 826 LEKEYLEKEIQelQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLK-----KERDELEAQL-- 898
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 496 KQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHMKAQKSGKEQQLDIMN------- 568
Cdd:TIGR02169 899 RELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEpvnmlai 978
|
330 340
....*....|....*....|....*....
gi 2217375254 569 KQYQQLESRLDEILSRIAKETEEIKDLEE 597
Cdd:TIGR02169 979 QEYEEVLKRLDELKEKRAKLEEERKAILE 1007
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1848-2044 |
2.67e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.59 E-value: 2.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1848 DISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQK 1927
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1928 ------SKLDQVL---------------SKVLAAEERVRTLQEEERwcESLEKTLSQTKRQLSEREQQLveksGELLALQ 1986
Cdd:COG3883 97 rsggsvSYLDVLLgsesfsdfldrlsalSKIADADADLLEELKADK--AELEAKKAELEAKLAELEALK----AELEAAK 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2217375254 1987 KEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSERDSS 2044
Cdd:COG3883 171 AELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAA 228
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
76-181 |
2.78e-04 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 45.42 E-value: 2.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 76 SHAGVRYITEALikklTKQDNLALIKSLNLSLSKDGGKKFKyiENLEKCVKLEVLNLSYNLIGK--IEKLDKLLK----- 148
Cdd:cd00116 178 GDAGIRALAEGL----KANCNLEVLDLNNNGLTDEGASALA--ETLASLKSLEVLNLGDNNLTDagAAALASALLspnis 251
|
90 100 110
....*....|....*....|....*....|....*....
gi 2217375254 149 LRELNLSYNKI------SKIEGIENMCNLQKLNLAGNEI 181
Cdd:cd00116 252 LLTLSLSCNDItddgakDLAEVLAEKESLLELDLRGNKF 290
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1583-1809 |
2.98e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 2.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1583 IREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQ 1662
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1663 RVSELEKTQVAVLEEKLELENLQQISQQQKGEI----EWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKcd 1738
Cdd:COG4942 102 QKEELAELLRALYRLGRQPPLALLLSPEDFLDAvrrlQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL-- 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217375254 1739 iwEKKLAQTKRVLAAAEENskmEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNS 1809
Cdd:COG4942 180 --LAELEEERAALEALKAE---RQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1295-2022 |
4.12e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 4.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1295 KEMEELHHNIDDLLQEKKSLEcEVEELHRTVQKRQQQKDfidgnveslmtELEIEKSLKHHEDIVDEIECIEKTLLKRRS 1374
Cdd:COG4913 235 DDLERAHEALEDAREQIELLE-PIRELAERYAAARERLA-----------ELEYLRAALRLWFAQRRLELLEAELEELRA 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1375 ELREADRLLAEAESELsctkektKNAVEKFTDAKRSLLQTESDA-EELERRAQETAVNLVKADQQLRSLQADAKDLEQHK 1453
Cdd:COG4913 303 ELARLEAELERLEARL-------DALREELDELEAQIRGNGGDRlEQLEREIERLERELEERERRRARLEALLAALGLPL 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1454 IKQEEILKEINKIVAAKdsdfqclskkKEKLTEELQKLQKDIEMAERNEDHHLQVLKEsevlLQAKRAELEKLKSQVTSQ 1533
Cdd:COG4913 376 PASAEEFAALRAEAAAL----------LEALEEELEALEEALAEAEAALRDLRRELRE----LEAEIASLERRKSNIPAR 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1534 QQEM-AVLDRQLGHKKEELHLLqGSMVQAKADLQE------------ALRLgetEVTEKcnHIREVKSLLEELSFqKGEL 1600
Cdd:COG4913 442 LLALrDALAEALGLDEAELPFV-GELIEVRPEEERwrgaiervlggfALTL---LVPPE--HYAAALRWVNRLHL-RGRL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1601 NVQiserktqltlikqeiekeeeNLQVVLRQMSKHKTELKNILDMLQLENHELQG-LKLQHDQR--------VSELEKTQ 1671
Cdd:COG4913 515 VYE--------------------RVRTGLPDPERPRLDPDSLAGKLDFKPHPFRAwLEAELGRRfdyvcvdsPEELRRHP 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1672 VAVLEEKlelenlqQISQ-QQKGEIEWQKQL-------------LERDKREIERMTAESRALQSCVECLSKEKEDLQEKC 1737
Cdd:COG4913 575 RAITRAG-------QVKGnGTRHEKDDRRRIrsryvlgfdnrakLAALEAELAELEEELAEAEERLEALEAELDALQERR 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1738 DIWEKKLAQTkrvlaaaeenskMEQSNLEKLELNVRKLQQELDQLNRDklslHNDISAMQQQLQEKREAVNSLQEELAnv 1817
Cdd:COG4913 648 EALQRLAEYS------------WDEIDVASAEREIAELEAELERLDAS----SDDLAALEEQLEELEAELEELEEELD-- 709
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1818 qdhlnlakqdllhttkhqdvllseqtRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVqQEMMFQRLQKE 1897
Cdd:COG4913 710 --------------------------ELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALL-EERFAAALGDA 762
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1898 RESEESK-LETSKVTLKEQQHQLEKELTDQKSKLDQV-LSKVLAAEERVRTLQEEERWCESLEktlsqtkrqlserEQQL 1975
Cdd:COG4913 763 VERELREnLEERIDALRARLNRAEEELERAMRAFNREwPAETADLDADLESLPEYLALLDRLE-------------EDGL 829
|
730 740 750 760
....*....|....*....|....*....|....*....|....*..
gi 2217375254 1976 VEKSGELLALQKEAdsMRADFSLLRNQFLTERKKAEKQVASLKEALK 2022
Cdd:COG4913 830 PEYEERFKELLNEN--SIEFVADLLSKLRRAIREIKERIDPLNDSLK 874
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1797-2085 |
4.15e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 4.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1797 QQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVL--LSEQTRLQKDISEWanrfedcQKEEETKQQQLQvlq 1874
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALqrLAEYSWDEIDVASA-------EREIAELEAELE--- 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1875 nEIEENKLKLVQQEMMFQRLQKERESEESKLETskvtLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQE---EE 1951
Cdd:COG4913 679 -RLDASSDDLAALEEQLEELEAELEELEEELDE----LKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRallEE 753
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1952 RWCESL-EKTLSQTKRQLSEREQQLVEKsgellaLQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIqRSQLEK 2030
Cdd:COG4913 754 RFAAALgDAVERELRENLEERIDALRAR------LNRAEEELERAMRAFNREWPAETADLDADLESLPEYLAL-LDRLEE 826
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 2217375254 2031 NLLTINEDserdssllsKEQKQENSCIQKEMATIELVAQDNHERARRLMKELNQM 2085
Cdd:COG4913 827 DGLPEYEE---------RFKELLNENSIEFVADLLSKLRRAIREIKERIDPLNDS 872
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1895-2112 |
4.21e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 4.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1895 QKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLS---KVLAAEERVRTLQEEERwceSLEKTLSQTKRQLSER 1971
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAlerRIAALARRIRALEQELA---ALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1972 EQQLVEKSGE----LLALQKEADSMRADFSLLRNQFLTERKKAE------KQVASLKEALKIQRSQLEKNLLTINEDSER 2041
Cdd:COG4942 96 RAELEAQKEElaelLRALYRLGRQPPLALLLSPEDFLDAVRRLQylkylaPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217375254 2042 DSSLLSKEQKQENScIQKEMATIELVAQDNHERARRLMKELNQMQYEYTELKKQMANQKDLERRQMEISDA 2112
Cdd:COG4942 176 LEALLAELEEERAA-LEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1735-2163 |
4.33e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.73 E-value: 4.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1735 EKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEEL 1814
Cdd:TIGR00618 173 FPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQ 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1815 ANVQDHLNLAKQDLLHTTKHQDVLLS-EQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQR 1893
Cdd:TIGR00618 253 EEQLKKQQLLKQLRARIEELRAQEAVlEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAA 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1894 LQKERESEESKlETSKVTLKEQQHQLEKELTDQKSKLDQvLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQ 1973
Cdd:TIGR00618 333 HVKQQSSIEEQ-RRLLQTLHSQEIHIRDAHEVATSIREI-SCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQA 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1974 QLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIQ---------RSQLEKNLLTINEDSERDSS 2044
Cdd:TIGR00618 411 TIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLqesaqslkeREQQLQTKEQIHLQETRKKA 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2045 LLSK--EQKQENSCIQKEMAT---IELVAQDNHE-----------RARRLMKELNQMQYEYTELKKQMANQKDLERRQME 2108
Cdd:TIGR00618 491 VVLArlLELQEEPCPLCGSCIhpnPARQDIDNPGpltrrmqrgeqTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQ 570
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 2217375254 2109 ISDAMRTLKSEVKDEIRTSLKNLNQFLPELPADLEAILERNENLEGELESLKENL 2163
Cdd:TIGR00618 571 SFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQ 625
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1276-2120 |
4.81e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.55 E-value: 4.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1276 LKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLEceveelhrtvqkrqqqkdfidgnvESLMTELEiekslkhh 1355
Cdd:pfam01576 7 MQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQ------------------------EQLQAETE-------- 54
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1356 edIVDEIECIEKTLLKRRSELREadrLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKA 1435
Cdd:pfam01576 55 --LCAEAEEMRARLAARKQELEE---ILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTT 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1436 DQQLRSLQADAKDLEQhkikQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIE-MAERNEDHHLQVLKESEV 1514
Cdd:pfam01576 130 EAKIKKLEEDILLLED----QNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEaMISDLEERLKKEEKGRQE 205
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1515 LLQAKR---AELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQ---AKADLQEALRLGETEVTEKCNHIREVKS 1588
Cdd:pfam01576 206 LEKAKRkleGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEetaQKNNALKKIRELEAQISELQEDLESERA 285
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1589 LLEELSFQKGELNVQISERKTQLtlikqEIEKEEENLQVVLRqmSKHKTELKNILDMLQLE--NHE--LQGLKLQHDQRV 1664
Cdd:pfam01576 286 ARNKAEKQRRDLGEELEALKTEL-----EDTLDTTAAQQELR--SKREQEVTELKKALEEEtrSHEaqLQEMRQKHTQAL 358
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1665 SEL--------------EKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESralqscveclSKEK 1730
Cdd:pfam01576 359 EELteqleqakrnkanlEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSES----------ERQR 428
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1731 EDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLS-------LHNDISAMQQQLQEK 1803
Cdd:pfam01576 429 AELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNlstrlrqLEDERNSLQEQLEEE 508
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1804 REAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLK 1883
Cdd:pfam01576 509 EEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVD 588
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1884 LVQQEMMFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCES------- 1956
Cdd:pfam01576 589 LDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARALEEALEAKEELERTNKQlraemed 668
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1957 --------------LEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEALK 2022
Cdd:pfam01576 669 lvsskddvgknvheLERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNMQALKAQFERDLQARDEQGEEKRRQLV 748
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2023 IQRSQLEKNLltinEDSERDSSLLSKEQKQENSCIQKEMATIELVAQDNHERARRLMKELNQMQYEYTELKKQMANQKDL 2102
Cdd:pfam01576 749 KQVRELEAEL----EDERKQRAQAVAAKKKLELDLKELEAQIDAANKGREEAVKQLKKLQAQMKDLQRELEEARASRDEI 824
|
890
....*....|....*...
gi 2217375254 2103 ERRQMEISDAMRTLKSEV 2120
Cdd:pfam01576 825 LAQSKESEKKLKNLEAEL 842
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1253-1894 |
5.08e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.34 E-value: 5.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1253 HCNVPEHHNLENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECE---VEELHRTVQKRQ 1329
Cdd:TIGR00618 279 LEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQrrlLQTLHSQEIHIR 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1330 QQKDFIDGNVESLMTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKR 1409
Cdd:TIGR00618 359 DAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQR 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1410 SLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKiVAAKDSDFQCLSKKKEK------ 1483
Cdd:TIGR00618 439 YAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLA-RLLELQEEPCPLCGSCIhpnpar 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1484 -LTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAK 1562
Cdd:TIGR00618 518 qDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQ 597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1563 ADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTEL--- 1639
Cdd:TIGR00618 598 DLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELlas 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1640 -KNILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESra 1718
Cdd:TIGR00618 678 rQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTV-- 755
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1719 lqscveclSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNdisAMQQ 1798
Cdd:TIGR00618 756 --------LKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILN---LQCE 824
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1799 QLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQkdisewanrfedcqkEEETKQQQLQVLQNEIE 1878
Cdd:TIGR00618 825 TLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKII---------------QLSDKLNGINQIKIQFD 889
|
650
....*....|....*.
gi 2217375254 1879 ENKLKLVQQEMMFQRL 1894
Cdd:TIGR00618 890 GDALIKFLHEITLYAN 905
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
438-861 |
5.89e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 5.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 438 QLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDL--LYKQLSGRLQLVNKLRQEALDL 515
Cdd:COG4717 82 EAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALeaELAELPERLEELEERLEELREL 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 516 ELQMEKQKQEIAGKQKEIKDLqiaidsldskdpkhshMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDL 595
Cdd:COG4717 162 EEELEELEAELAELQEELEEL----------------LEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEEL 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 596 EEQL--TEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENM 673
Cdd:COG4717 226 EEELeqLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAE 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 674 RKLEQSALQAELEKERQALKNALG-KAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLK--DFQNHLNHVVD--GLVRPE 748
Cdd:COG4717 306 ELQALPALEELEEEELEELLAALGlPPDLSPEELLELLDRIEELQELLREAEELEEELQleELEQEIAALLAeaGVEDEE 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 749 EVAARVDELRRKLKLGTGEMNIHSPSDVLGKSLADLQKQFSEILARSKWERDEAQVRErkLQEEMALQQEKLATGQEEFR 828
Cdd:COG4717 386 ELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEE--LEEELEELREELAELEAELE 463
|
410 420 430
....*....|....*....|....*....|...
gi 2217375254 829 QACERALEARMNFDKRQHEARIQQMENEIHYLQ 861
Cdd:COG4717 464 QLEEDGELAELLQELEELKAELRELAEEWAALK 496
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1428-1613 |
5.97e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.82 E-value: 5.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1428 TAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQ 1507
Cdd:COG3883 7 AAPTPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERRE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1508 VLKES--------------EVLLQAK-------RAE-LEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADL 1565
Cdd:COG3883 87 ELGERaralyrsggsvsylDVLLGSEsfsdfldRLSaLSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAEL 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2217375254 1566 QEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTL 1613
Cdd:COG3883 167 EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAA 214
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
298-891 |
6.19e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 45.45 E-value: 6.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 298 EEIKNQDKLNKSLKEEAMLQKQSCEELKSDLNTKNELLKQKTIELTRACQKQYELEQELAFYKIDAKFEPLNYYPSEYAE 377
Cdd:COG5022 810 KEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKI 889
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 378 IDKapdespyigksryKRNMFATESYIIDSaQAVQIKK-MEPDEQLRNDHmnlrghtpldtqledKEKKIsaaqTRLSEL 456
Cdd:COG5022 890 DVK-------------SISSLKLVNLELES-EIIELKKsLSSDLIENLEF---------------KTELI----ARLKKL 936
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 457 HDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDL--LYKQLsgrlqlvNKLRQEALDLELQMEKQKQEIAGKQKEIK 534
Cdd:COG5022 937 LNNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYedLLKKS-------TILVREGNKANSELKNFKKELAELSKQYG 1009
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 535 DLQIAIDSLDSKD----PKHSHMK---AQKSGKEQQLDI------MNKQYQQLESRLDEILSRiaKETEEIKDLEE---Q 598
Cdd:COG5022 1010 ALQESTKQLKELPvevaELQSASKiisSESTELSILKPLqklkglLLLENNQLQARYKALKLR--RENSLLDDKQLyqlE 1087
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 599 LTEGQIAANEALKKDLEGVIS-GLQEYLGTIKGQATQAQNecrkLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKle 677
Cdd:COG5022 1088 STENLLKTINVKDLEVTNRNLvKPANVLQFIVAQMIKLNL----LQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFW-- 1161
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 678 QSALQAELEKERQALKnalgkaqfSEEKEQENSELHAKLKHLQDDNNLLKQQLKdfqNHLNHVVDGLVRpeevAARVDEL 757
Cdd:COG5022 1162 EANLEALPSPPPFAAL--------SEKRLYQSALYDEKSKLSSSEVNDLKNELI---ALFSKIFSGWPR----GDKLKKL 1226
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 758 RRKLKLGTGEMNIHSPSDVLGKSLADLQKQFSEILaRSKWERDEAQVRERKLQEEM-------ALQQEKLATGQEEFRQA 830
Cdd:COG5022 1227 ISEGWVPTEYSTSLKGFNNLNKKFDTPASMSNEKL-LSLLNSIDNLLSSYKLEEEVlpatinsLLQYINVGLFNALRTKA 1305
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217375254 831 CERALEARMNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQ 891
Cdd:COG5022 1306 SSLRWKSATEVNYNSEELDDWCREFEISDVDEELEELIQAVKVLQLLKDDLNKLDELLDAC 1366
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
439-667 |
6.63e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 45.01 E-value: 6.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 439 LEDKEKKISAAQTRLSELHDE----IEKAEQQILRATEEFKQLEeaIQLKKISEAgkdllykqlsgrlqlVNKLRQEALD 514
Cdd:PHA02562 204 IEEQRKKNGENIARKQNKYDElveeAKTIKAEIEELTDELLNLV--MDIEDPSAA---------------LNKLNTAAAK 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 515 LELQMEKQkqeiagkQKEIKDLQ------IAIDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKE 588
Cdd:PHA02562 267 IKSKIEQF-------QKVIKMYEkggvcpTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKL 339
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217375254 589 TEEIKDLEEQltEGQIAANEALKKDLEGVISGLQEYLGTIKGqatqaqnECRKLRDEKETLLQRLTEVEQERDQLEIVA 667
Cdd:PHA02562 340 LELKNKISTN--KQSLITLVDKAKKVKAAIEELQAEFVDNAE-------ELAKLQDELDKIVKTKSELVKEKYHRGIVT 409
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1293-1607 |
7.51e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.03 E-value: 7.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1293 SEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDfiDGNVESLMTELE-------IEKSLKHHEDIVDEIECI 1365
Cdd:PRK02224 410 AEDFLEELREERDELREREAELEATLRTARERVEEAEALLE--AGKCPECGQPVEgsphvetIEEDRERVEELEAELEDL 487
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1366 EKTLLKRRSELREADRLlAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAvnlVKADQQlrslQAD 1445
Cdd:PRK02224 488 EEEVEEVEERLERAEDL-VEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELE---AEAEEK----REA 559
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1446 AKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSK------KKEKLTEELQKLQ-KDIEMAERNEDH--HLQVLKESEVLL 1516
Cdd:PRK02224 560 AAEAEEEAEEAREEVAELNSKLAELKERIESLERirtllaAIADAEDEIERLReKREALAELNDERreRLAEKRERKREL 639
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1517 QAK--RAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGS--MVQAKADLQEALRLGETEVTEKCNHIREVKSLLEE 1592
Cdd:PRK02224 640 EAEfdEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEigAVENELEELEELRERREALENRVEALEALYDEAEE 719
|
330
....*....|....*
gi 2217375254 1593 LSFQKGELNVQISER 1607
Cdd:PRK02224 720 LESMYGDLRAELRQR 734
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1715-1943 |
7.54e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.44 E-value: 7.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1715 ESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLnRDKLSlhNDIS 1794
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEER-REELG--ERAR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1795 AMQQQlqekrEAVNSLQEELANVQDHlnlakQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQ 1874
Cdd:COG3883 94 ALYRS-----GGSVSYLDVLLGSESF-----SDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALK 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217375254 1875 NEIEENKLKLvqqemmfQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEER 1943
Cdd:COG3883 164 AELEAAKAEL-------EAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAA 225
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1700-2122 |
8.00e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 8.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1700 QLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQsnleklelnvrkLQQEL 1779
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEA------------LEAEL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1780 DQLNRDKLSLHNDIsamqQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQdvllseqtrlqkdISEWANRFEDC 1859
Cdd:COG4717 142 AELPERLEELEERL----EELRELEEELEELEAELAELQEELEELLEQLSLATEEE-------------LQDLAEELEEL 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1860 QKEEETKQQQLQVLQNEIE--ENKLKLVQQEMMFQRLQKERESEESKLE-TSKVTLKEQQHQLEKELTDQKSKLDQVLSK 1936
Cdd:COG4717 205 QQRLAELEEELEEAQEELEelEEELEQLENELEAAALEERLKEARLLLLiAAALLALLGLGGSLLSLILTIAGVLFLVLG 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1937 VLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQlveksgELLALQKEADSMRADFSLLRNQFLTERKKAEKQVAS 2016
Cdd:COG4717 285 LLALLFLLLAREKASLGKEAEELQALPALEELEEEELE------ELLAALGLPPDLSPEELLELLDRIEELQELLREAEE 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2017 LKEALKIQRSQLEKNLLTINEDSERDSSLLSK-EQKQENSCIQKEMATIE--LVAQDNHERARRLMKELNQMQYEYTELK 2093
Cdd:COG4717 359 LEEELQLEELEQEIAALLAEAGVEDEEELRAAlEQAEEYQELKEELEELEeqLEELLGELEELLEALDEEELEEELEELE 438
|
410 420
....*....|....*....|....*....
gi 2217375254 2094 KQManqKDLERRQMEISDAMRTLKSEVKD 2122
Cdd:COG4717 439 EEL---EELEEELEELREELAELEAELEQ 464
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1746-2092 |
8.37e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 44.12 E-value: 8.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1746 QTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAK 1825
Cdd:COG4372 21 KTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQ 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1826 QDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKL 1905
Cdd:COG4372 101 EELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAE 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1906 ETSKVTLKEQQHQLEKELTDQKSKLDQ---VLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEKSGEL 1982
Cdd:COG4372 181 AEQALDELLKEANRNAEKEEELAEAEKlieSLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEI 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1983 LALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSERDSSLLSKEQKQENSCIQKEMA 2062
Cdd:COG4372 261 EELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELA 340
|
330 340 350
....*....|....*....|....*....|
gi 2217375254 2063 TIELVAQDNHERARRLMKELNQMQYEYTEL 2092
Cdd:COG4372 341 DLLQLLLVGLLDNDVLELLSKGAEAGVADG 370
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1763-2136 |
8.66e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 44.68 E-value: 8.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1763 SNLEKLELNVRKLQQELDQLNRDKLSLhnDISAMQQQLQEKREAVNSLQEELANVQDHlnlaKQDLLHTTKHQDVLLSEQ 1842
Cdd:COG5022 787 VDYELKWRLFIKLQPLLSLLGSRKEYR--SYLACIIKLQKTIKREKKLRETEEVEFSL----KAEVLIQKFGRSLKAKKR 860
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1843 TRLQKDisewANRFEDCQKEEETKQQQLQVLQNEIEE-NKLKLVQQEMMFQRLQKERESEESKLETSKVTLKE----QQH 1917
Cdd:COG5022 861 FSLLKK----ETIYLQSAQRVELAERQLQELKIDVKSiSSLKLVNLELESEIIELKKSLSSDLIENLEFKTELiarlKKL 936
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1918 QLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFS 1997
Cdd:COG5022 937 LNNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTK 1016
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1998 LL--RNQFLTERKKAEKQVASLKEALKIQRSQLE---KNLLTINEDSERDSSLLskeqkqenscIQKEMATIELVAQDNH 2072
Cdd:COG5022 1017 QLkeLPVEVAELQSASKIISSESTELSILKPLQKlkgLLLLENNQLQARYKALK----------LRRENSLLDDKQLYQL 1086
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217375254 2073 ERARRLMKELNqmqyeytELKKQMANQKDLERRQMEISDAMRTLKSEVKDEIRTSLKNLNQFLP 2136
Cdd:COG5022 1087 ESTENLLKTIN-------VKDLEVTNRNLVKPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLE 1143
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
442-537 |
8.78e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.38 E-value: 8.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 442 KEKKISAAQtrlSELHDEIEKAEQQILRATEEFKQLEEAIQLKKiseagkdllyKQLSGRLQLVNKLRQEALDLELQMEK 521
Cdd:PRK12704 55 KKEALLEAK---EEIHKLRNEFEKELRERRNELQKLEKRLLQKE----------ENLDRKLELLEKREEELEKKEKELEQ 121
|
90
....*....|....*.
gi 2217375254 522 QKQEIAGKQKEIKDLQ 537
Cdd:PRK12704 122 KQQELEKKEEELEELI 137
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1463-1922 |
1.11e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1463 INKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKEsevlLQAKRAELEKLKSQVTSQQQEMAVLDR 1542
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEE----LEELEEELEELEAELEELREELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1543 QLGHKkeelhllqgSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEE 1622
Cdd:COG4717 124 LLQLL---------PLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEEL 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1623 ENLQVVLRQMSKHKTELKNILDMLQ---------LENHELQGLKLQHDQRVSELEKTQVAV----------LEEKLELEN 1683
Cdd:COG4717 195 QDLAEELEELQQRLAELEEELEEAQeeleeleeeLEQLENELEAAALEERLKEARLLLLIAaallallglgGSLLSLILT 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1684 LQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQS 1763
Cdd:COG4717 275 IAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLR 354
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1764 NLEKL--ELNVRKLQQELDQL-NRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQdvLLS 1840
Cdd:COG4717 355 EAEELeeELQLEELEQEIAALlAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEE--LEE 432
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1841 EQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLvQQEMMFQRLQkERESEESKLETSKVTLKEQQHQLE 1920
Cdd:COG4717 433 ELEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQ-ELEELKAELR-ELAEEWAALKLALELLEEAREEYR 510
|
..
gi 2217375254 1921 KE 1922
Cdd:COG4717 511 EE 512
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1434-1537 |
1.29e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.00 E-value: 1.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1434 KADQQLRSLQADAKD-LEQHKIKQEEILKEinKIVAAKD------SDFQCLSKKKEKlteELQKLQKDIEMAERNEDHHL 1506
Cdd:PRK12704 28 IAEAKIKEAEEEAKRiLEEAKKEAEAIKKE--ALLEAKEeihklrNEFEKELRERRN---ELQKLEKRLLQKEENLDRKL 102
|
90 100 110
....*....|....*....|....*....|.
gi 2217375254 1507 QVLKESEVLLQAKRAELEKLKSQVTSQQQEM 1537
Cdd:PRK12704 103 ELLEKREEELEKKEKELEQKQQELEKKEEEL 133
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1377-1931 |
1.30e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.94 E-value: 1.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1377 READRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLE---QHK 1453
Cdd:pfam05483 229 EEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKmslQRS 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1454 IKQEEILKEinkivaakdsDFQCLSKKKEKLTEElqklqKDIEMAERNEDH--HLQVLKESEVLLQAKRAELEKLKSQVT 1531
Cdd:pfam05483 309 MSTQKALEE----------DLQIATKTICQLTEE-----KEAQMEELNKAKaaHSFVVTEFEATTCSLEELLRTEQQRLE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1532 SQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALR-LGETEVTEKCNhiREVKSLLEELSFQKGELNVQISERKTQ 1610
Cdd:pfam05483 374 KNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKiLAEDEKLLDEK--KQFEKIAEELKGKEQELIFLLQAREKE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1611 LTLIKQEIEKEEENLQVVLRQMSKHKTELknildmlqlENHELQGLKLQHDQRVSELEK---TQVAVLEEKLELENLQQI 1687
Cdd:pfam05483 452 IHDLEIQLTAIKTSEEHYLKEVEDLKTEL---------EKEKLKNIELTAHCDKLLLENkelTQEASDMTLELKKHQEDI 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1688 SQQQKGEIEWQKQLLERDKREiermTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEK 1767
Cdd:pfam05483 523 INCKKQEERMLKQIENLEEKE----MNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNN 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1768 LELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQ----DHLNLAKQDLLHTTKHQDVLLSEQT 1843
Cdd:pfam05483 599 LKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKqkfeEIIDNYQKEIEDKKISEEKLLEEVE 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1844 RLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLetsKVTLKEQQHQLEKEL 1923
Cdd:pfam05483 679 KAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSA---KAALEIELSNIKAEL 755
|
....*...
gi 2217375254 1924 TDQKSKLD 1931
Cdd:pfam05483 756 LSLKKQLE 763
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
1699-2163 |
1.31e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 44.04 E-value: 1.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1699 KQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQE 1778
Cdd:pfam10174 288 KNKIDQLKQELSKKESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQ 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1779 LDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLnlakqdllhttKHQDvllseqtrlqKDISEWANRFED 1858
Cdd:pfam10174 368 LQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQL-----------RDKD----------KQLAGLKERVKS 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1859 CQKEEETKQQQLQVLQNEIEEnklklvqQEMMFQRLQKERESEESKletskvtLKEQQHQLEKELTDQKSKLDQVLSKVL 1938
Cdd:pfam10174 427 LQTDSSNTDTALTTLEEALSE-------KERIIERLKEQREREDRE-------RLEELESLKKENKDLKEKVSALQPELT 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1939 AAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMrADFSLLRNQFLTERKKAEKQVASLK 2018
Cdd:pfam10174 493 EKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAHNA-EEAVRTNPEINDRIRLLEQEVARYK 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2019 EALKIQRSQLEKnLLTINEDSERDSSLLSKEQKQENSCIQKEMATiELVAQDNHERARRLMKELNQMQYEYTELKKQMAN 2098
Cdd:pfam10174 572 EESGKAQAEVER-LLGILREVENEKNDKDKKIAELESLTLRQMKE-QNKKVANIKHGQQEMKKKGAQLLEEARRREDNLA 649
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217375254 2099 QKDLERRQMEISDAMRTLKSEVkDEIRTSLKNLNQFLPELPADLEAI-LERNENLEGELESLKENL 2163
Cdd:pfam10174 650 DNSQQLQLEELMGALEKTRQEL-DATKARLSSTQQSLAEKDGHLTNLrAERRKQLEEILEMKQEAL 714
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
475-1064 |
1.39e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.90 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 475 KQLEEAIQLKKISEAGKDL--LYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHS- 551
Cdd:PRK03918 149 KVVRQILGLDDYENAYKNLgeVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEk 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 552 ------HMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQ---LTEGQIAANE-----ALKKDLEGV 617
Cdd:PRK03918 229 evkeleELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKvkeLKELKEKAEEyiklsEFYEEYLDE 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 618 ISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKLEQSALQAELEKERQALKNALG 697
Cdd:PRK03918 309 LREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 698 KAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEVAARVDELRRK--LKLGTGEM-NIHSPS 774
Cdd:PRK03918 389 LEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKelLEEYTAELkRIEKEL 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 775 DVLGKSLADLQKQFSEIlaRSKWERDEAQVRERKLQEEMALQQEKLAT-GQEEFRQACERALEARMNFDKRqhEARIQQM 853
Cdd:PRK03918 469 KEIEEKERKLRKELREL--EKVLKKESELIKLKELAEQLKELEEKLKKyNLEELEKKAEEYEKLKEKLIKL--KGEIKSL 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 854 ENEIHYLQENLKSMEEIQGltdlQLQEADEEKERILAQLREL------EKKKKLEDAKSQEQVFgldkelkklkkavaTS 927
Cdd:PRK03918 545 KKELEKLEELKKKLAELEK----KLDELEEELAELLKELEELgfesveELEERLKELEPFYNEY--------------LE 606
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 928 DKLATAELTIAKDQLKSLHGTVMKINQERAEELQEAERFSRKAAQAARDLTRAEAEiELLQNLLRQKGEQFRLEMEKtgv 1007
Cdd:PRK03918 607 LKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYE-ELREEYLELSRELAGLRAEL--- 682
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 2217375254 1008 gTGANSQVLEIEKLNETMERQRTEIARLQNVLDLtgsdnkggFENVLEEIAELRREV 1064
Cdd:PRK03918 683 -EELEKRREEIKKTLEKLKEELEEREKAKKELEK--------LEKALERVEELREKV 730
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1365-1525 |
1.41e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 1.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1365 IEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQ--ETAVNLVKADQQLRSL 1442
Cdd:COG1579 15 LDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKkyEEQLGNVRNNKEYEAL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1443 QADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAernedhhLQVLKESEVLLQAKRAE 1522
Cdd:COG1579 95 QKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEE-------LAELEAELEELEAEREE 167
|
...
gi 2217375254 1523 LEK 1525
Cdd:COG1579 168 LAA 170
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1258-1453 |
1.42e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 1.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1258 EHHNLENEVSRLEDIMQHLKSKKREERWmraskRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDG 1337
Cdd:COG4913 263 RYAAARERLAELEYLRAALRLWFAQRRL-----ELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGG 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1338 NveslmtelEIEkSLKHhedivdEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKftdAKRSLLQTESD 1417
Cdd:COG4913 338 D--------RLE-QLER------EIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAE---AAALLEALEEE 399
|
170 180 190
....*....|....*....|....*....|....*.
gi 2217375254 1418 AEELERRAQETAVNLVKADQQLRSLQADAKDLEQHK 1453
Cdd:COG4913 400 LEALEEALAEAEAALRDLRRELRELEAEIASLERRK 435
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1869-2034 |
1.60e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1869 QLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEqqhqLEKELTDQKSKLDQVLSKVLAAEER----- 1943
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELED----LEKEIKRLELEIEEVEARIKKYEEQlgnvr 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1944 ----VRTLQEEErwcESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKE 2019
Cdd:COG1579 87 nnkeYEALQKEI---ESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEA 163
|
170
....*....|....*
gi 2217375254 2020 ALKIQRSQLEKNLLT 2034
Cdd:COG1579 164 EREELAAKIPPELLA 178
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
427-861 |
1.62e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.79 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 427 MNLRGHTPLDTQLEDKEKKISAAQTRLSELHDEIEKA-------EQQILRATEEFKQLEEA-IQLKKISEAGKDL--LYK 496
Cdd:PRK04863 283 VHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELneaesdlEQDYQAASDHLNLVQTAlRQQEKIERYQADLeeLEE 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 497 QLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLES 576
Cdd:PRK04863 363 RLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAED 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 577 RLDEILSRIAKETEEIKDLEEQLTEGQiAANEALKKDLEGVISglqeylgtIKGQ--ATQAQNECRKLRDEKETLLQRLT 654
Cdd:PRK04863 443 WLEEFQAKEQEATEELLSLEQKLSVAQ-AAHSQFEQAYQLVRK--------IAGEvsRSEAWDVARELLRRLREQRHLAE 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 655 EVEQERDQLeivamdaenmRKLEQS-ALQAELEKERQALKNALGKA-QFSEEKEQENSELHAKLKHLQDdnnllkqqlkd 732
Cdd:PRK04863 514 QLQQLRMRL----------SELEQRlRQQQRAERLLAEFCKRLGKNlDDEDELEQLQEELEARLESLSE----------- 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 733 fqnhlnhvvdglvRPEEVAARVDELRRKLKlgtgemnihspsdvlgkslaDLQKQFSEILARS-KWErdEAQVRERKLQE 811
Cdd:PRK04863 573 -------------SVSEARERRMALRQQLE--------------------QLQARIQRLAARApAWL--AAQDALARLRE 617
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 2217375254 812 EMAlqqEKLATGQ--EEFRQA-CERALEARMNfdKRQHEARIQQMENEIHYLQ 861
Cdd:PRK04863 618 QSG---EEFEDSQdvTEYMQQlLERERELTVE--RDELAARKQALDEEIERLS 665
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1772-2162 |
1.66e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 1.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1772 VRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISE 1851
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1852 WA--NRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSK 1929
Cdd:COG4717 128 LPlyQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQR 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1930 LDQvlskvlaAEERVRTLQEE-----ERWCESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFS------- 1997
Cdd:COG4717 208 LAE-------LEEELEEAQEEleeleEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILtiagvlf 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1998 ------------LLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSERDS--SLLSKEQKQENSCIQKEMAT 2063
Cdd:COG4717 281 lvlgllallfllLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEEllELLDRIEELQELLREAEELE 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2064 IELVAQDNHERARRLMKELN-QMQYEYTELKKQMANQKDLERRQMEISDAMRTLKSEV--------KDEIRTSLKNLNQF 2134
Cdd:COG4717 361 EELQLEELEQEIAALLAEAGvEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELeellealdEEELEEELEELEEE 440
|
410 420
....*....|....*....|....*...
gi 2217375254 2135 LPELPADLEAILERNENLEGELESLKEN 2162
Cdd:COG4717 441 LEELEEELEELREELAELEAELEQLEED 468
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1727-2239 |
1.67e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 43.74 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1727 SKEKEDLQEKCDIweKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRdklSLHNDISAMQQQLQEKREa 1806
Cdd:PRK01156 149 AQRKKILDEILEI--NSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKK---QIADDEKSHSITLKEIER- 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1807 vnsLQEELANVQDHLNLAKQDLlhttKHQDVLLSEQTRLQKDISEWANRFEDcQKEEETKQQQLQVLQNEIEENKLKLVQ 1886
Cdd:PRK01156 223 ---LSIEYNNAMDDYNNLKSAL----NELSSLEDMKNRYESEIKTAESDLSM-ELEKNNYYKELEERHMKIINDPVYKNR 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1887 QEMM-FQRLQKERESEESKLETSKVTLkEQQHQLEKELTDQKSKLDQVLSKVLAAEE---RVRTLQEEERWCESLEKTLS 1962
Cdd:PRK01156 295 NYINdYFKYKNDIENKKQILSNIDAEI-NKYHAIIKKLSVLQKDYNDYIKKKSRYDDlnnQILELEGYEMDYNSYLKSIE 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1963 QTKRQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASL---KEALKIQRSQLEKNLLTINEDS 2039
Cdd:PRK01156 374 SLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLnqrIRALRENLDELSRNMEMLNGQS 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2040 ----------ERDSSLLSKEQKQENSCIQKEMATIELVAQDNHERARRLMK--------ELNQMQYEYTELKKQMANQKD 2101
Cdd:PRK01156 454 vcpvcgttlgEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKrkeyleseEINKSINEYNKIESARADLED 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2102 LERRQMEISDA----------MRTLKSEVKDEIRTSLKNLNQFLPELpaDLEAILERNENLEGELESLKENLPFTMNEGP 2171
Cdd:PRK01156 534 IKIKINELKDKhdkyeeiknrYKSLKLEDLDSKRTSWLNALAVISLI--DIETNRSRSNEIKKQLNDLESRLQEIEIGFP 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2172 FEEKLNFSQVHIMDEHWRG-----------EALREKLRHREDRLK---AQLRHCMSKQAEVLIKGKrQTEGTLHSLRRQV 2237
Cdd:PRK01156 612 DDKSYIDKSIREIENEANNlnnkyneiqenKILIEKLRGKIDNYKkqiAEIDSIIPDLKEITSRIN-DIEDNLKKSRKAL 690
|
..
gi 2217375254 2238 DA 2239
Cdd:PRK01156 691 DD 692
|
|
| LRR_4 |
pfam12799 |
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ... |
170-213 |
1.72e-03 |
|
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.
Pssm-ID: 463713 [Multi-domain] Cd Length: 44 Bit Score: 38.00 E-value: 1.72e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 2217375254 170 NLQKLNLAGNEIEHIPvwLGKKLKSLRVLNLKGN-KISSLQDISK 213
Cdd:pfam12799 2 NLEVLDLSNNQITDIP--PLAKLPNLETLDLSGNnKITDLSDLAN 44
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
145-206 |
1.88e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 43.27 E-value: 1.88e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217375254 145 KLLKLRELNLSYNKIskiEG-----IENMCNLQKLNLAGNEIE-HIPVWLGKkLKSLRVLNLKGNKIS 206
Cdd:PLN03150 440 KLRHLQSINLSGNSI---RGnippsLGSITSLEVLDLSYNSFNgSIPESLGQ-LTSLRILNLNGNSLS 503
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1338-1602 |
1.91e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 43.53 E-value: 1.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1338 NVESLMTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEaesELSCTKEKTKNAVEKFTDAKRSLLqtesd 1417
Cdd:COG5022 798 KLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAE---VLIQKFGRSLKAKKRFSLLKKETI----- 869
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1418 aeelerrAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDfqcLSKKKEKLTEELQKLQKDIEM 1497
Cdd:COG5022 870 -------YLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSD---LIENLEFKTELIARLKKLLNN 939
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1498 AERNEDHHLQVLKESEVL-LQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQ---GSMVQAKADLQEALRLGE 1573
Cdd:COG5022 940 IDLEEGPSIEYVKLPELNkLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKkelAELSKQYGALQESTKQLK 1019
|
250 260 270
....*....|....*....|....*....|..
gi 2217375254 1574 ---TEVTEKCNHIREVKSLLEELSFQKGELNV 1602
Cdd:COG5022 1020 elpVEVAELQSASKIISSESTELSILKPLQKL 1051
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1393-1828 |
1.94e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 1.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1393 TKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQhKIKQEEILKEINKIVAAKDS 1472
Cdd:COG4717 65 KPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEK-LLQLLPLYQELEALEAELAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1473 DFQCLSKKKEKLtEELQKLQKDIEMAERNEDHHLQVLKES-EVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEEL 1551
Cdd:COG4717 144 LPERLEELEERL-EELRELEEELEELEAELAELQEELEELlEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEEL 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1552 HLLQGSMVQAKADLQealRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQ 1631
Cdd:COG4717 223 EELEEELEQLENELE---AAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKAS 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1632 MSKHKTELKNILDMLQLENHELQGLKlqHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIer 1711
Cdd:COG4717 300 LGKEAEELQALPALEELEEEELEELL--AALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAAL-- 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1712 mtaesralqsCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLE-LNVRKLQQELDQLNRDKLSLH 1790
Cdd:COG4717 376 ----------LAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEaLDEEELEEELEELEEELEELE 445
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 2217375254 1791 NDISAMQQQLQEKREAVNSL--QEELANVQDHLNLAKQDL 1828
Cdd:COG4717 446 EELEELREELAELEAELEQLeeDGELAELLQELEELKAEL 485
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1914-2163 |
1.94e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.51 E-value: 1.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1914 EQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMR 1993
Cdd:PRK03918 186 KRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1994 ADFSLLRNQfLTERKKAEKQVASLKEALKiQRSQLEKNLLTINEDSERDSSLLSKEQKQENScIQKEMATIElvaqDNHE 2073
Cdd:PRK03918 266 ERIEELKKE-IEELEEKVKELKELKEKAE-EYIKLSEFYEEYLDELREIEKRLSRLEEEING-IEERIKELE----EKEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2074 RARRLMKELNQMQYEYTELKKQMANQKDLERRQMEISDAMRTLKSEVKDEIRTSLKNLNQFLPELPADLEAILERNENLE 2153
Cdd:PRK03918 339 RLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELK 418
|
250
....*....|
gi 2217375254 2154 GELESLKENL 2163
Cdd:PRK03918 419 KEIKELKKAI 428
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
458-665 |
2.14e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 43.50 E-value: 2.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 458 DEIEKAEQQILRATEEFKQLEEAIQ--LKKISE-AGKDLLYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIagkqKEIK 534
Cdd:TIGR01612 1500 DEADKNAKAIEKNKELFEQYKKDVTelLNKYSAlAIKNKFAKTKKDSEIIIKEIKDAHKKFILEAEKSEQKI----KEIK 1575
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 535 DLQIAIDsldskDPKHSHMKAQKSGKEQQLDIMNKQYQQLesRLDEILSRIAKETEEIKDLEEQLTEGQIAANEALKKDL 614
Cdd:TIGR01612 1576 KEKFRIE-----DDAAKNDKSNKAAIDIQLSLENFENKFL--KISDIKKKINDCLKETESIEKKISSFSIDSQDTELKEN 1648
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2217375254 615 EGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEI 665
Cdd:TIGR01612 1649 GDNLNSLQEFLESLKDQKKNIEDKKKELDELDSEIEKIEIDVDQHKKNYEI 1699
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1265-1522 |
2.20e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.59 E-value: 2.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1265 EVSRLEDIMQHLKSKKREERWMRASKRQSE--KEMEELH--HNIDDLLQEKKSLECEVEELHRTVQKRQQQKdfidGNVE 1340
Cdd:PTZ00121 1520 EAKKADEAKKAEEAKKADEAKKAEEKKKADelKKAEELKkaEEKKKAEEAKKAEEDKNMALRKAEEAKKAEE----ARIE 1595
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1341 SLMTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEE 1420
Cdd:PTZ00121 1596 EVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKK 1675
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1421 LERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQK-DIEMAE 1499
Cdd:PTZ00121 1676 KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEaKKDEEE 1755
|
250 260
....*....|....*....|...
gi 2217375254 1500 RNEDHHLQVLKESEVLLQAKRAE 1522
Cdd:PTZ00121 1756 KKKIAHLKKEEEKKAEEIRKEKE 1778
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
1759-2052 |
2.28e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 43.50 E-value: 2.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1759 KMEQSNLEKLELNVRKLQQ-----------ELDQLNRDKLSLHNDISAMQ----QQLQEKREAVNSLQEELANVQDHLNL 1823
Cdd:PTZ00108 995 KRKEYLLGKLERELARLSNkvrfikhvingELVITNAKKKDLVKELKKLGyvrfKDIIKKKSEKITAEEEEGAEEDDEAD 1074
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1824 AKQDLLHT--TKHQDVLLSEQ-TRLQKDisewanRFEDCQKEEETKQQQLQVLQN-EIEE------NKLKLVQQEMMFQR 1893
Cdd:PTZ00108 1075 DEDDEEELgaAVSYDYLLSMPiWSLTKE------KVEKLNAELEKKEKELEKLKNtTPKDmwledlDKFEEALEEQEEVE 1148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1894 LQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCES---LEKTLSQTKRQLSE 1970
Cdd:PTZ00108 1149 EKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDkpdNKKSNSSGSDQEDD 1228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1971 REQQLVEKSGELLALQKEAD-----SMRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLTINEDSERDSSL 2045
Cdd:PTZ00108 1229 EEQKTKPKKSSVKRLKSKKNnssksSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKK 1308
|
....*..
gi 2217375254 2046 LSKEQKQ 2052
Cdd:PTZ00108 1309 KVKKRLE 1315
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1408-2131 |
2.34e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.17 E-value: 2.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1408 KRSLLQTESDAEELERRAQEtavNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEE 1487
Cdd:pfam05483 91 KKWKVSIEAELKQKENKLQE---NRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLLKETCARS 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1488 LQKLQKDIEMAERNEDHHLQVLKESEVLLQAkraeLEKLKSQVTSQQQEMAVldrQLGHKKEELHLLQGSMVQAKADLQE 1567
Cdd:pfam05483 168 AEKTKKYEYEREETRQVYMDLNNNIEKMILA----FEELRVQAENARLEMHF---KLKEDHEKIQHLEEEYKKEINDKEK 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1568 ALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQ 1647
Cdd:pfam05483 241 QVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQ 320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1648 LENHELQGLKLQHDQRVSELEKTQVAvleeklelenLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLS 1727
Cdd:pfam05483 321 IATKTICQLTEEKEAQMEELNKAKAA----------HSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKS 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1728 KEKEDLQEKCDIWEKKLAQTKRVLAAaEENSKMEQSNLEKLELNVRKLQQELDQLNRDKlslHNDISAMQQQLQEKREAV 1807
Cdd:pfam05483 391 SELEEMTKFKNNKEVELEELKKILAE-DEKLLDEKKQFEKIAEELKGKEQELIFLLQAR---EKEIHDLEIQLTAIKTSE 466
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1808 NSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWAnrfedcqkeEETKQQQLQVLQNEIEEnklklvqq 1887
Cdd:pfam05483 467 EHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMT---------LELKKHQEDIINCKKQE-------- 529
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1888 emmfQRLQKERESeeskLETSKVTLKEQQHQLEKELTDQKsklDQVLSKVLAAEERVRTLQEE----ERWCESLEKTLSQ 1963
Cdd:pfam05483 530 ----ERMLKQIEN----LEEKEMNLRDELESVREEFIQKG---DEVKCKLDKSEENARSIEYEvlkkEKQMKILENKCNN 598
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1964 TKRQLSEREQQLVEKSGELLALQKEADSMRADFsllrNQFLTERKKAEKQVASLKEALK--IQRSQLEKNLLTINEDSER 2041
Cdd:pfam05483 599 LKKQIENKNKNIEELHQENKALKKKGSAENKQL----NAYEIKVNKLELELASAKQKFEeiIDNYQKEIEDKKISEEKLL 674
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2042 DSSLLSKEQKQENSCIQKEmatIELVAQDNHERARRLM-KELNQMQYEYTELKKQMANQKDLERRQMEISDAMRTLKSEV 2120
Cdd:pfam05483 675 EEVEKAKAIADEAVKLQKE---IDKRCQHKIAEMVALMeKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNI 751
|
730
....*....|.
gi 2217375254 2121 KDEIRTSLKNL 2131
Cdd:pfam05483 752 KAELLSLKKQL 762
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1792-1950 |
2.45e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.83 E-value: 2.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1792 DISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQK--EEETKQQQ 1869
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEqlGNVRNNKE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1870 LQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLEtskvTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQE 1949
Cdd:COG1579 91 YEALQKEIESLKRRISDLEDEILELMERIEELEEELA----ELEAELAELEAELEEKKAELDEELAELEAELEELEAERE 166
|
.
gi 2217375254 1950 E 1950
Cdd:COG1579 167 E 167
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
1292-2167 |
2.53e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 43.50 E-value: 2.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1292 QSEKEMEELHHNIDDLLQEKKSLE-CE--VEELHRTVQKRQQQKDFIDGNVESLMTELEIEKSLKHHedivdeiecIEKT 1368
Cdd:TIGR01612 901 EINKSIEEEYQNINTLKKVDEYIKiCEntKESIEKFHNKQNILKEILNKNIDTIKESNLIEKSYKDK---------FDNT 971
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1369 LLKRRSELREADRllaeaESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVkaDQQLRSLQADAKD 1448
Cdd:TIGR01612 972 LIDKINELDKAFK-----DASLNDYEAKNNELIKYFNDLKANLGKNKENMLYHQFDEKEKATNDI--EQKIEDANKNIPN 1044
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1449 LEQ------HKIkQEEILKEINK--------IVAAKDSDFQCLSKKKEKL----------------TEELQKLQKDIEMA 1498
Cdd:TIGR01612 1045 IEIaihtsiYNI-IDEIEKEIGKniellnkeILEEAEINITNFNEIKEKLkhynfddfgkeenikyADEINKIKDDIKNL 1123
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1499 ERNEDHHLQVLKESEvllqaKRAE--LEKLKSQVTSQQQemaVLDRQLGHKK-EELHLLQGSMVqakadlqealrlgeTE 1575
Cdd:TIGR01612 1124 DQKIDHHIKALEEIK-----KKSEnyIDEIKAQINDLED---VADKAISNDDpEEIEKKIENIV--------------TK 1181
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1576 VTEKCNHIREVKSLLEELSfqkgelnvQISERKTQLTLIKQEIEKEEENL-QVVLRQMSKHKTELKNILDMLQLENHELQ 1654
Cdd:TIGR01612 1182 IDKKKNIYDEIKKLLNEIA--------EIEKDKTSLEEVKGINLSYGKNLgKLFLEKIDEEKKKSEHMIKAMEAYIEDLD 1253
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1655 GLKLQHDQRVSELektqvavleeklelenlqQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQ 1734
Cdd:TIGR01612 1254 EIKEKSPEIENEM------------------GIEMDIKAEMETFNISHDDDKDHHIISKKHDENISDIREKSLKIIEDFS 1315
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1735 EKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLEL-NVRKLQQeldqlnrdklsLHNDISAMQQQLQEKREAVNSLQEE 1813
Cdd:TIGR01612 1316 EESDINDIKKELQKNLLDAQKHNSDINLYLNEIANIyNILKLNK-----------IKKIIDEVKEYTKEIEENNKNIKDE 1384
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1814 LANVQDHLNLAKQDL-LHTTKHQdvllSEQTRLQKDISEWANRFEDCQK---EEETKQQQLQVLQNEIEENKLKLVQQ-E 1888
Cdd:TIGR01612 1385 LDKSEKLIKKIKDDInLEECKSK----IESTLDDKDIDECIKKIKELKNhilSEESNIDTYFKNADENNENVLLLFKNiE 1460
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1889 MMFQR----LQKERESEESKLETSKVTLKEQQHQLEKELTD-QKSKLDQVLSKVLAAEERVRTLQEEERWCE-SLEKTLS 1962
Cdd:TIGR01612 1461 MADNKsqhiLKIKKDNATNDHDFNINELKEHIDKSKGCKDEaDKNAKAIEKNKELFEQYKKDVTELLNKYSAlAIKNKFA 1540
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1963 QTKRQLSEREQQLVEKSGELLAlqkEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIQRS--QLEKNLLTINEDSE 2040
Cdd:TIGR01612 1541 KTKKDSEIIIKEIKDAHKKFIL---EAEKSEQKIKEIKKEKFRIEDDAAKNDKSNKAAIDIQLSleNFENKFLKISDIKK 1617
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2041 RDSSLLSkeqkqENSCIQKEMATIELVAQDNheRARRLMKELNQMQYEYTELKKQmanQKDLERRQMEISDAMRTLKSeV 2120
Cdd:TIGR01612 1618 KINDCLK-----ETESIEKKISSFSIDSQDT--ELKENGDNLNSLQEFLESLKDQ---KKNIEDKKKELDELDSEIEK-I 1686
|
890 900 910 920
....*....|....*....|....*....|....*....|....*..
gi 2217375254 2121 KDEIRTSLKNLNQFLpelpadLEAILERNENLEGELESLKENLPFTM 2167
Cdd:TIGR01612 1687 EIDVDQHKKNYEIGI------IEKIKEIAIANKEEIESIKELIEPTI 1727
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
435-888 |
2.53e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.24 E-value: 2.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 435 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEA---IQLKKISEAGK-------DLLYKQLSGRLQL 504
Cdd:pfam01576 73 LEEILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAArqkLQLEKVTTEAKikkleedILLLEDQNSKLSK 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 505 VNKLRQEAL-----DLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLESRLD 579
Cdd:pfam01576 153 ERKLLEERIseftsNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIA 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 580 EILSRIAKETEEIKDLEEQLTEGQIAANEALKK--DLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETL-------- 649
Cdd:pfam01576 233 ELRAQLAKKEEELQAALARLEEETAQKNNALKKirELEAQISELQEDLESERAARNKAEKQRRDLGEELEALkteledtl 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 650 ----------LQRLTEVEQERDQLEIVAMDAE----NMRKLEQSALQAELEKERQALKNALGKAQFSEEKEQENSELHAK 715
Cdd:pfam01576 313 dttaaqqelrSKREQEVTELKKALEEETRSHEaqlqEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAE 392
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 716 LKHLQD-------DNNLLKQQLKDFQNHLNhvvDGLVRPEEVAARVDELRRKLKLGTGEMN-IHSPSDVLGKSLADLQKQ 787
Cdd:pfam01576 393 LRTLQQakqdsehKRKKLEGQLQELQARLS---ESERQRAELAEKLSKLQSELESVSSLLNeAEGKNIKLSKDVSSLESQ 469
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 788 F---SEILARSKWERDEAQVRERKLQEEMALQQEKLATgQEEFRQACERALEArMNFDKRQHEARIQQMENEIHYLQENL 864
Cdd:pfam01576 470 LqdtQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEE-EEEAKRNVERQLST-LQAQLSDMKKKLEEDAGTLEALEEGK 547
|
490 500
....*....|....*....|....
gi 2217375254 865 KSMEEIQGLTDLQLQEADEEKERI 888
Cdd:pfam01576 548 KRLQRELEALTQQLEEKAAAYDKL 571
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1625-2013 |
2.86e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 2.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1625 LQVVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENlQQISQQQKGEIEWQKQLLER 1704
Cdd:COG4717 76 LEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQEL-EALEAELAELPERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1705 DKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNR 1784
Cdd:COG4717 155 LEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLEN 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1785 DKLSLhndisAMQQQLQEKR---------------------------EAVNSLQEELANVQDHLNLAKQDLLHTTKHQDV 1837
Cdd:COG4717 235 ELEAA-----ALEERLKEARlllliaaallallglggsllsliltiaGVLFLVLGLLALLFLLLAREKASLGKEAEELQA 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1838 LLSEQTRLQKDISEWANRFEDCQKEEET-------KQQQLQVLQNEIE--ENKLKLVQQEMMFQRLQKERESEESKLETS 1908
Cdd:COG4717 310 LPALEELEEEELEELLAALGLPPDLSPEellelldRIEELQELLREAEelEEELQLEELEQEIAALLAEAGVEDEEELRA 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1909 KVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTlqeeerwcESLEKTLSQTKRQLSEREQQLVEKSGELLALQKE 1988
Cdd:COG4717 390 ALEQAEEYQELKEELEELEEQLEELLGELEELLEALDE--------EELEEELEELEEELEELEEELEELREELAELEAE 461
|
410 420
....*....|....*....|....*
gi 2217375254 1989 ADSMRADFSLLRNQFLTERKKAEKQ 2013
Cdd:COG4717 462 LEQLEEDGELAELLQELEELKAELR 486
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1264-1668 |
2.93e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 2.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1264 NEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLEcEVEELHRTVQKRQQqkdfIDGNVESLM 1343
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLE-KLLQLLPLYQELEA----LEAELAELP 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1344 TELE-IEKSLKHHEDIVDEIECIEKTLLKRRSELREA-DRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEEL 1421
Cdd:COG4717 146 ERLEeLEERLEELRELEEELEELEAELAELQEELEELlEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEEL 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1422 ERRAQETAVNLVKADQQLR---------------SLQADAKDLEQHKIKQEEILKEINKIVAAkdsDFQCLSKKKEKLTE 1486
Cdd:COG4717 226 EEELEQLENELEAAALEERlkearlllliaaallALLGLGGSLLSLILTIAGVLFLVLGLLAL---LFLLLAREKASLGK 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1487 ELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQemavLDRQLGHKKEELhLLQGSMVQAKADLQ 1566
Cdd:COG4717 303 EAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQE----LLREAEELEEEL-QLEELEQEIAALLA 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1567 EALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISER--------KTQLTLIKQEIEKEEENLQVVLRQMSKHKTE 1638
Cdd:COG4717 378 EAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELeellealdEEELEEELEELEEELEELEEELEELREELAE 457
|
410 420 430
....*....|....*....|....*....|
gi 2217375254 1639 LKNILDMLQlENHELQGLKLQHDQRVSELE 1668
Cdd:COG4717 458 LEAELEQLE-EDGELAELLQELEELKAELR 486
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
86-216 |
3.34e-03 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 41.96 E-value: 3.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 86 ALIKKLTKQDNLALIKSLNLSLSKDGGKKFkyIENLEKCV-KLEVLNLSYNLI--GKIEKLDKLL----KLRELNLSYNK 158
Cdd:cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLL--AKGLKDLPpALEKLVLGRNRLegASCEALAKALranrDLKELNLANNG 176
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217375254 159 ISKiEGIENMC-------NLQKLNLAGNEIEHIPV----WLGKKLKSLRVLNLKGNKISSLqDISKLKP 216
Cdd:cd00116 177 IGD-AGIRALAeglkancNLEVLDLNNNGLTDEGAsalaETLASLKSLEVLNLGDNNLTDA-GAAALAS 243
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1740-1902 |
3.44e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 3.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1740 WEKKLAQTKRVLAAAE-----ENSKMEQSNLEKL-ELNVR----KLQQELDQLNRDKLslhNDISAMQQQLQEKREAVNS 1809
Cdd:PRK12704 24 VRKKIAEAKIKEAEEEakrilEEAKKEAEAIKKEaLLEAKeeihKLRNEFEKELRERR---NELQKLEKRLLQKEENLDR 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1810 LQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEwanRFEDCQK--EEETKQQQLQVLQNEIEENKLKLVQQ 1887
Cdd:PRK12704 101 KLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQ---ELERISGltAEEAKEILLEKVEEEARHEAAVLIKE 177
|
170
....*....|....*
gi 2217375254 1888 EMMFQRLQKERESEE 1902
Cdd:PRK12704 178 IEEEAKEEADKKAKE 192
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
435-734 |
3.80e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.31 E-value: 3.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 435 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLE-----------EAIQLKKISEAGKDLLYKQLSGRLQ 503
Cdd:TIGR04523 108 INSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEkeleklnnkynDLKKQKEELENELNLLEKEKLNIQK 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 504 LVNKLRQEALDLELQM---EKQKQEIAGKQKEIKDLQ----IAIDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLES 576
Cdd:TIGR04523 188 NIDKIKNKLLKLELLLsnlKKKIQKNKSLESQISELKkqnnQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKK 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 577 RLDEILSRIAKETEEIKDLEEQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEV 656
Cdd:TIGR04523 268 QLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQL 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 657 EQERDQLEivamdaenmrkLEQSALQAELEKERQALKNAL----GKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKD 732
Cdd:TIGR04523 348 KKELTNSE-----------SENSEKQRELEEKQNEIEKLKkenqSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKK 416
|
..
gi 2217375254 733 FQ 734
Cdd:TIGR04523 417 LQ 418
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
515-1034 |
4.16e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.44 E-value: 4.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 515 LELQMEKQKQEIAGKQKEIKDLQIAiDSLDSKDPKHSHMKAQKSGKEQQLDimNKQYQQLESRLDEILSRIAKETEEIKD 594
Cdd:PTZ00121 1029 IEELTEYGNNDDVLKEKDIIDEDID-GNHEGKAEAKAHVGQDEGLKPSYKD--FDFDAKEDNRADEATEEAFGKAEEAKK 1105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 595 LEEQLTEGQIAANEALKKDLEgvisgLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEveqERDQLEIvAMDAENMR 674
Cdd:PTZ00121 1106 TETGKAEEARKAEEAKKKAED-----ARKAEEARKAEDARKAEEARKAEDAKRVEIARKAE---DARKAEE-ARKAEDAK 1176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 675 KLEQsALQAELEKERQALKNALGKAQFSEEKEQENSELHAKLKHLQDDNNllkqqlkdfqnhlnhvVDGLVRPEEVAARV 754
Cdd:PTZ00121 1177 KAEA-ARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKK----------------AEAVKKAEEAKKDA 1239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 755 DELRRKLKlgtgEMNIHSPSDVLGKSLADLQKQFSEILARSKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACE-- 832
Cdd:PTZ00121 1240 EEAKKAEE----ERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEak 1315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 833 RALEARMNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLqlqEADEEKERILAQLRELEKKKKLEDAKSQEQVFG 912
Cdd:PTZ00121 1316 KADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEA---EAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK 1392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 913 LDKELKKLKKAVATSDKLATAELTIAK-DQLKSLHGTVMKINQ--ERAEELQEAERFSRKAAQAAR-DLTRAEAEIELLQ 988
Cdd:PTZ00121 1393 ADEAKKKAEEDKKKADELKKAAAAKKKaDEAKKKAEEKKKADEakKKAEEAKKADEAKKKAEEAKKaEEAKKKAEEAKKA 1472
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 2217375254 989 NLLRQKGEQFRLEMEKTGVGTGANSQVLEIEKLNEtmERQRTEIAR 1034
Cdd:PTZ00121 1473 DEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAE--AKKKADEAK 1516
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1256-1608 |
4.40e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 4.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1256 VPEHHNLENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTV---------- 1325
Cdd:PRK03918 285 LKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLeeleerhely 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1326 --------QKRQQQKDFIDGNVESLMTELE-IEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESEL-----S 1391
Cdd:PRK03918 365 eeakakkeELERLKKRLTGLTPEKLEKELEeLEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCpvcgrE 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1392 CTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKiKQEEILKEINKIVAAKD 1471
Cdd:PRK03918 445 LTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLK-ELEEKLKKYNLEELEKK 523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1472 sdfqclSKKKEKLTEELQKLQKDIEMAERnEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLD-RQLGHKKEE 1550
Cdd:PRK03918 524 ------AEEYEKLKEKLIKLKGEIKSLKK-ELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESvEELEERLKE 596
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217375254 1551 LHLLQGSMVQAKA------DLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERK 1608
Cdd:PRK03918 597 LEPFYNEYLELKDaekeleREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEE 660
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2012-2163 |
5.10e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 5.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 2012 KQVASLKEALKIQRSQLEKNLLTINEDSERDSSLLSKEQKQENSCIQKEMATIELVAQDNHERARRLMKELNQMQYEYTE 2091
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEE 150
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217375254 2092 LKKQMANQKDLERRQMEISDAMRTLKSEVKDEIRTSLKNLNQFLPELPADLEAILERNENLEGELESLKENL 2163
Cdd:COG4717 151 LEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEEL 222
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1516-1736 |
6.26e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 6.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1516 LQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEA---LRLGETEVTEKCNHIREVKSLLEE 1592
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALeqeLAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1593 LSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQV 1672
Cdd:COG4942 102 QKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLA 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217375254 1673 AVLEEKLELENLQQISQQQKGEIEwqkQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEK 1736
Cdd:COG4942 182 ELEEERAALEALKAERQKLLARLE---KELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1438-1656 |
6.31e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 6.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1438 QLRSLQADAKDLEQHKIKQEEILKEINKivaakdsdfqcLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQ 1517
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAA-----------LKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1518 AKRAELEKLKSQVTSQQQEMA----VLDRQLGHKKEELHLLQGSMVQAKAD---LQEALRLGETEVTEKCNHIREVKSLL 1590
Cdd:COG4942 87 ELEKEIAELRAELEAQKEELAellrALYRLGRQPPLALLLSPEDFLDAVRRlqyLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217375254 1591 EELSFQKGELNVQISERKTQLTlikqEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGL 1656
Cdd:COG4942 167 AELEAERAELEALLAELEEERA----ALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| GAS |
pfam13851 |
Growth-arrest specific micro-tubule binding; This family is the highly conserved central ... |
550-664 |
6.65e-03 |
|
Growth-arrest specific micro-tubule binding; This family is the highly conserved central region of a number of metazoan proteins referred to as growth-arrest proteins. In mouse, Gas8 is predominantly a testicular protein, whose expression is developmentally regulated during puberty and spermatogenesis. In humans, it is absent in infertile males who lack the ability to generate gametes. The localization of Gas8 in the motility apparatus of post-meiotic gametocytes and mature spermatozoa, together with the detection of Gas8 also in cilia at the apical surfaces of epithelial cells lining the pulmonary bronchi and Fallopian tubes suggests that the Gas8 protein may have a role in the functioning of motile cellular appendages. Gas8 is a microtubule-binding protein localized to regions of dynein regulation in mammalian cells.
Pssm-ID: 464001 [Multi-domain] Cd Length: 200 Bit Score: 40.27 E-value: 6.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 550 HSHMKAQKSGKEQQLDiMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEgqiaaneaLKKDLEGVISGLQEyLGTIK 629
Cdd:pfam13851 22 RNNLELIKSLKEEIAE-LKKKEERNEKLMSEIQQENKRLTEPLQKAQEEVEE--------LRKQLENYEKDKQS-LKNLK 91
|
90 100 110
....*....|....*....|....*....|....*
gi 2217375254 630 GQATQAQNECRKLRDEKETLLQRLTEVEQERDQLE 664
Cdd:pfam13851 92 ARLKVLEKELKDLKWEHEVLEQRFEKVERERDELY 126
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1369-2047 |
7.65e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.75 E-value: 7.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1369 LLKRRSELREADRLLAEAESELSCTK-EKTKNAVE----KFTDAKRSLLQTESDAE--ELERRAQETAVNLVKADQQL-- 1439
Cdd:pfam12128 155 LGRERVELRSLARQFALCDSESPLRHiDKIAKAMHskegKFRDVKSMIVAILEDDGvvPPKSRLNRQQVEHWIRDIQAia 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1440 ---------RSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIE--MAERNEDhhlqv 1508
Cdd:pfam12128 235 gimkirpefTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKekRDELNGE----- 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1509 LKESEVLLQAKRAELEKLKSQVTSQQQEmavldrqlGHKKEELHLLQGSMVQAKADLQEALRLGETE----VTEKCNHIR 1584
Cdd:pfam12128 310 LSAADAAVAKDRSELEALEDQHGAFLDA--------DIETAAADQEQLPSWQSELENLEERLKALTGkhqdVTAKYNRRR 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1585 EVKS--LLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQvvlRQMSKHKTELKNILDMLQLENHELQG------- 1655
Cdd:pfam12128 382 SKIKeqNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELR---EQLEAGKLEFNEEEYRLKSRLGELKLrlnqata 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1656 ---LKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQ--------SCVE 1724
Cdd:pfam12128 459 tpeLLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELElqlfpqagTLLH 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1725 CLSKEKEDlqekcdiWEKKLAqtkRVLAAA-----------EENSKMEQSNLEKLELNVRKLQ-----QELDQLNRDKLS 1788
Cdd:pfam12128 539 FLRKEAPD-------WEQSIG---KVISPEllhrtdldpevWDGSVGGELNLYGVKLDLKRIDvpewaASEEELRERLDK 608
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1789 LHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEwanrfedcQKEEETKQQ 1868
Cdd:pfam12128 609 AEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNK--------ALAERKDSA 680
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1869 QLQVLQNEIEENKLKLVQQEMM-----------FQRLQKERESEESK----------LETSKVTLKEQQHQLEKELTDQK 1927
Cdd:pfam12128 681 NERLNSLEAQLKQLDKKHQAWLeeqkeqkrearTEKQAYWQVVEGALdaqlallkaaIAARRSGAKAELKALETWYKRDL 760
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1928 SKLDQVLSKVLAAEERVRTL-----------QEEERWCESLEKTLSQTKRQLSEreqQLVEKSGELLALQKEADSMRADF 1996
Cdd:pfam12128 761 ASLGVDPDVIAKLKREIRTLerkieriavrrQEVLRYFDWYQETWLQRRPRLAT---QLSNIERAISELQQQLARLIADT 837
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|.
gi 2217375254 1997 SLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKnLLTINEDSERDSSLLS 2047
Cdd:pfam12128 838 KLRRAKLEMERKASEKQQVRLSENLRGLRCEMSK-LATLKEDANSEQAQGS 887
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
435-910 |
7.70e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 41.35 E-value: 7.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 435 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQIlrateefkqleeaiqlkkiseagkDLLYKQLSGRLQLVNKLRQEALD 514
Cdd:pfam10174 294 LKQELSKKESELLALQTKLETLTNQNSDCKQHI------------------------EVLKESLTAKEQRAAILQTEVDA 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 515 LELQMEKQKQEIAGKQKEIKDLQIAIDSLDSkdpKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKD 594
Cdd:pfam10174 350 LRLRLEEKESFLNKKTKQLQDLTEEKSTLAG---EIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKERVKS 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 595 LEEQL--TEGQIAANEALKKDLEGVISGLQEylgtikgqatQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMD--- 669
Cdd:pfam10174 427 LQTDSsnTDTALTTLEEALSEKERIIERLKE----------QREREDRERLEELESLKKENKDLKEKVSALQPELTEkes 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 670 -----AENMRKLEQSA---------LQAELEKERQ---ALKNALGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKD 732
Cdd:pfam10174 497 slidlKEHASSLASSGlkkdsklksLEIAVEQKKEecsKLENQLKKAHNAEEAVRTNPEINDRIRLLEQEVARYKEESGK 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 733 FQNHLNHVVDGLVRPEEvaarvDELRRKLKLGTGEMNIHSPSDVLGKSLADLQKQFSEILARSKWERDEAQVRERKLQEE 812
Cdd:pfam10174 577 AQAEVERLLGILREVEN-----EKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLADN 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 813 MALQQ-EKLATGQEEFRQACErALEARMNFDKRQHEARIQQMENeihYLQENLKSMEEIQGLTDLQLQEADEEKERILAQ 891
Cdd:pfam10174 652 SQQLQlEELMGALEKTRQELD-ATKARLSSTQQSLAEKDGHLTN---LRAERRKQLEEILEMKQEALLAAISEKDANIAL 727
|
490
....*....|....*....
gi 2217375254 892 LRELEKKKKledaKSQEQV 910
Cdd:pfam10174 728 LELSSSKKK----KTQEEV 742
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
507-742 |
7.78e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.15 E-value: 7.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 507 KLRQEALDLEL--QMEK-QKQEIAGKQKEIKDLQIAIDSLDSKdpkhshMKAQKSGKEQQldimNKQYQQLESRLDEILS 583
Cdd:PHA02562 154 KLVEDLLDISVlsEMDKlNKDKIRELNQQIQTLDMKIDHIQQQ------IKTYNKNIEEQ----RKKNGENIARKQNKYD 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 584 RIAKETEEIKDLEEQLTEgQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNE------------CR----------- 640
Cdd:PHA02562 224 ELVEEAKTIKAEIEELTD-ELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVikmyekggvcptCTqqisegpdrit 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 641 KLRDEKETLLQRLTEVEQERDQLEiVAMDAENMRKLEQSALQAELEKERQALKNALGKAqfseekeqenSELHAKLKHLQ 720
Cdd:PHA02562 303 KIKDKLKELQHSLEKLDTAIDELE-EIMDEFNEQSKKLLELKNKISTNKQSLITLVDKA----------KKVKAAIEELQ 371
|
250 260
....*....|....*....|..
gi 2217375254 721 DDNNLLKQQLKDFQNHLNHVVD 742
Cdd:PHA02562 372 AEFVDNAEELAKLQDELDKIVK 393
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
304-580 |
7.78e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.15 E-value: 7.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 304 DKLNKSLKEEAMLQKQSCEELKSDLNTK--------NELLKQKTIELTRAcQKQYELEQELAfYKIDAKFEPLNyypSEY 375
Cdd:PHA02562 169 DKLNKDKIRELNQQIQTLDMKIDHIQQQiktynkniEEQRKKNGENIARK-QNKYDELVEEA-KTIKAEIEELT---DEL 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 376 AEIDKaPDESPyiGKSRYKRNMFATESyiidSAQAVQIKKMEpdeqlrndHMNLRGHT-PLDTQ-LEDKEKKISAAQTRL 453
Cdd:PHA02562 244 LNLVM-DIEDP--SAALNKLNTAAAKI----KSKIEQFQKVI--------KMYEKGGVcPTCTQqISEGPDRITKIKDKL 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 454 SELhdeiekaeqqilraTEEFKQLEEAIQlkkiseagkdllykQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEI 533
Cdd:PHA02562 309 KEL--------------QHSLEKLDTAID--------------ELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKA 360
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 2217375254 534 KDLQIAIDSLDSKDPKHshmKAQKSGKEQQLDIMNKQYQQLESRLDE 580
Cdd:PHA02562 361 KKVKAAIEELQAEFVDN---AEELAKLQDELDKIVKTKSELVKEKYH 404
|
|
| Surf_Exclu_PgrA |
TIGR04320 |
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface ... |
1726-1828 |
8.05e-03 |
|
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.
Pssm-ID: 275124 [Multi-domain] Cd Length: 356 Bit Score: 40.87 E-value: 8.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1726 LSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSL-HNDISAMQQQLQEKR 1804
Cdd:TIGR04320 252 PPNSLAALQAKLATAQADLAAAQTALNTAQAALTSAQTAYAAAQAALATAQKELANAQAQALQTaQNNLATAQAALANAE 331
|
90 100
....*....|....*....|....
gi 2217375254 1805 EAVNSLQEELANVQDHLNLAKQDL 1828
Cdd:TIGR04320 332 ARLAKAKEALANLNADLAKKQAAL 355
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1854-2085 |
8.29e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.03 E-value: 8.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1854 NRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEQQHQLEkeltdQKSKLDQV 1933
Cdd:pfam07888 34 NRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELE-----EKYKELSA 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1934 LSKVLAAEERVRTLQEEE-----RWCESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERK 2008
Cdd:pfam07888 109 SSEELSEEKDALLAQRAAheariRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELR 188
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2217375254 2009 KAEKQVASLKEALKIQRSQLEKNLLTINEDSERDSSLLSKEQKQENSCiqKEMATIELVAQDNHERARRLMKELNQM 2085
Cdd:pfam07888 189 SLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALL--EELRSLQERLNASERKVEGLGEELSSM 263
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
245-664 |
8.94e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.20 E-value: 8.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 245 RSLESLEGQPVTTQDRQEAFERfSLEEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSL----KEEAML--QK 318
Cdd:PRK03918 245 KELESLEGSKRKLEEKIRELEE-RIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELreieKRLSRLeeEI 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 319 QSCEELKSDLNTKNELLKQKTIELTRACQKQYELEQ-ELAFYKIDAKFEPLNYYPSEYAEIDKAPDESPYIGKSRYKRNM 397
Cdd:PRK03918 324 NGIEERIKELEEKEERLEELKKKLKELEKRLEELEErHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEI 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 398 FATESYIIDsaqavQIKKMEPDEQLRNDHMN----LRGHTPL-----------------DTQLEDKEKKISAAQTRLSEL 456
Cdd:PRK03918 404 EEEISKITA-----RIGELKKEIKELKKAIEelkkAKGKCPVcgrelteehrkelleeyTAELKRIEKELKEIEEKERKL 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 457 HDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDLLYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDL 536
Cdd:PRK03918 479 RKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKL 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 537 QIAIDSLDSKDPKHSHMKAQKS-----------GKEQQLDIMNKQYQQL---ESRLDEILSRIAKETEEIKDLEEQLTEG 602
Cdd:PRK03918 559 AELEKKLDELEEELAELLKELEelgfesveeleERLKELEPFYNEYLELkdaEKELEREEKELKKLEEELDKAFEELAET 638
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217375254 603 QIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLE 664
Cdd:PRK03918 639 EKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLK 700
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
572-722 |
9.72e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 9.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 572 QQLESRLDEILSRIAKETEEIKDLEEQLT--EGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKE-- 647
Cdd:COG1579 13 QELDSELDRLEHRLKELPAELAELEDELAalEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEye 92
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217375254 648 TLLQRLTEVEQERDQLEIVAMDAenMRKLEQ-SALQAELEKERQALKNALGKAQfsEEKEQENSELHAKLKHLQDD 722
Cdd:COG1579 93 ALQKEIESLKRRISDLEDEILEL--MERIEElEEELAELEAELAELEAELEEKK--AELDEELAELEAELEELEAE 164
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1778-2030 |
9.79e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.15 E-value: 9.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1778 ELDQLNRDKlslhndISAMQQQLQEKREAVNSLQEELANVQDHLNlakqdllhttkhqdvllsEQTRLQKD-ISEWANRF 1856
Cdd:PHA02562 167 EMDKLNKDK------IRELNQQIQTLDMKIDHIQQQIKTYNKNIE------------------EQRKKNGEnIARKQNKY 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1857 EDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLET-SKV-----------TLKEQQHQLEKELT 1924
Cdd:PHA02562 223 DELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQfQKVikmyekggvcpTCTQQISEGPDRIT 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217375254 1925 DQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFsllrnqfl 2004
Cdd:PHA02562 303 KIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEF-------- 374
|
250 260
....*....|....*....|....*.
gi 2217375254 2005 TERKKAEKQVASLKEALKIQRSQLEK 2030
Cdd:PHA02562 375 VDNAEELAKLQDELDKIVKTKSELVK 400
|
|
| |
