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Conserved domains on  [gi|2217356450|ref|XP_047273363|]
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endoplasmic reticulum-Golgi intermediate compartment protein 1 isoform X6 [Homo sapiens]

Protein Classification

ERGIC_N domain-containing protein( domain architecture ID 10620097)

ERGIC_N domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ERGIC_N pfam13850
Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC); This family is the N-terminal of ...
 31-122 1.51e-36

Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC); This family is the N-terminal of ERGIC proteins, ER-Golgi intermediate compartment clusters, otherwise known as Ervs, and is associated with family COPIIcoated_ERV, pfam07970.


:

Pssm-ID: 464000  Cd Length: 91  Bit Score: 122.95  E-value: 1.51e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217356450  31 KFDIYRKVPKDLTQPTYTGAIISICCCLFILFLFLSELTGFITTEVVNELYVddpDKDSGGKIDVSLNISLPNLHCELVG 110
Cdd:pfam13850   3 SFDAFPKTPEDYRVRTSSGGIITIISILIILFLFLSELGSYLTGTVDPELVV---DKSRGEKLQINLDITFPAMPCDLLS 79

                          90
                  ....*....|..
gi 2217356450 111 LDIQDEMGRHEV 122
Cdd:pfam13850  80 VDVMDASGDRQL 91
 
Name Accession Description Interval E-value
ERGIC_N pfam13850
Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC); This family is the N-terminal of ...
 31-122 1.51e-36

Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC); This family is the N-terminal of ERGIC proteins, ER-Golgi intermediate compartment clusters, otherwise known as Ervs, and is associated with family COPIIcoated_ERV, pfam07970.


Pssm-ID: 464000  Cd Length: 91  Bit Score: 122.95  E-value: 1.51e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217356450  31 KFDIYRKVPKDLTQPTYTGAIISICCCLFILFLFLSELTGFITTEVVNELYVddpDKDSGGKIDVSLNISLPNLHCELVG 110
Cdd:pfam13850   3 SFDAFPKTPEDYRVRTSSGGIITIISILIILFLFLSELGSYLTGTVDPELVV---DKSRGEKLQINLDITFPAMPCDLLS 79

                          90
                  ....*....|..
gi 2217356450 111 LDIQDEMGRHEV 122
Cdd:pfam13850  80 VDVMDASGDRQL 91
 
Name Accession Description Interval E-value
ERGIC_N pfam13850
Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC); This family is the N-terminal of ...
 31-122 1.51e-36

Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC); This family is the N-terminal of ERGIC proteins, ER-Golgi intermediate compartment clusters, otherwise known as Ervs, and is associated with family COPIIcoated_ERV, pfam07970.


Pssm-ID: 464000  Cd Length: 91  Bit Score: 122.95  E-value: 1.51e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217356450  31 KFDIYRKVPKDLTQPTYTGAIISICCCLFILFLFLSELTGFITTEVVNELYVddpDKDSGGKIDVSLNISLPNLHCELVG 110
Cdd:pfam13850   3 SFDAFPKTPEDYRVRTSSGGIITIISILIILFLFLSELGSYLTGTVDPELVV---DKSRGEKLQINLDITFPAMPCDLLS 79

                          90
                  ....*....|..
gi 2217356450 111 LDIQDEMGRHEV 122
Cdd:pfam13850  80 VDVMDASGDRQL 91
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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