rap1 GTPase-GDP dissociation stimulator 1 isoform X5 [Homo sapiens]
List of domain hits
Name | Accession | Description | Interval | E-value | |||
ARM | smart00185 | Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ... |
168-211 | 5.73e-04 | |||
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. : Pssm-ID: 214547 [Multi-domain] Cd Length: 41 Bit Score: 37.41 E-value: 5.73e-04
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chemoreceptor_sensor super family | cl00144 | 4-helix bundle ligand binding sensor domain of chemoreceptors such as Tar or Tsr; The ligand ... |
183-266 | 5.55e-03 | |||
4-helix bundle ligand binding sensor domain of chemoreceptors such as Tar or Tsr; The ligand binding sensor domain of chemoreceptors and related sensor histidine kinases forms homodimers and binds to ligands via the dimerization interface, a feature that appears to be conserved in this domain superfamily. This family includes ligand binding sensor domain of several chemoreceptors, such as Escherichia coli Tar, Tsr, NarQ, NarX, Pseudomonas aeruginosa KinB, Rhodopseudomonas palustris histidine kinase HK9 chemoreceptors, Comamonas testosteroni CNB-2 MCP2201 and Anaeromyxobacter dehalogenans histidine kinase Adeh_2942, among others. The actual alignment was detected with superfamily member cd19411: Pssm-ID: 444710 [Multi-domain] Cd Length: 138 Bit Score: 36.85 E-value: 5.55e-03
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Name | Accession | Description | Interval | E-value | |||
ARM | smart00185 | Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ... |
168-211 | 5.73e-04 | |||
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Pssm-ID: 214547 [Multi-domain] Cd Length: 41 Bit Score: 37.41 E-value: 5.73e-04
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Arm | pfam00514 | Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ... |
168-211 | 2.51e-03 | |||
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Pssm-ID: 425727 [Multi-domain] Cd Length: 41 Bit Score: 35.51 E-value: 2.51e-03
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MCP2201-like_sensor | cd19411 | ligand-binding sensor domain of Comamonas testosteroni CNB-2 MCP2201 and similar ... |
183-266 | 5.55e-03 | |||
ligand-binding sensor domain of Comamonas testosteroni CNB-2 MCP2201 and similar chemoreceptors; This family includes the ligand-binding sensor domain of Comamonas testosteroni transmembrane chemoreceptor CNB-2 MCP2201 and similar chemoreceptors. The C. testosteroni methyl-accepting chemotaxis protein MCP2201 triggers chemotaxis towards tricarboxylic acid cycle intermediates such as citric acid and aromatic compounds. While the apo-form ligand binding domain (LBD) forms a typical four-helix bundle homodimer, similar to other chemoreceptors in the superfamily such as Escherichia coli Tar and Tsr, the citrate-bound LBD reveals a four-helix bundle homotrimer. This type of oligomerization has never been observed in other bacterial chemoreceptor LBD. Site-directed mutations of key amino acid residues have demonstrated the physiological importance of the homotrimer for chemotaxis. Pssm-ID: 438629 [Multi-domain] Cd Length: 138 Bit Score: 36.85 E-value: 5.55e-03
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Name | Accession | Description | Interval | E-value | |||
ARM | smart00185 | Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ... |
168-211 | 5.73e-04 | |||
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Pssm-ID: 214547 [Multi-domain] Cd Length: 41 Bit Score: 37.41 E-value: 5.73e-04
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Arm | pfam00514 | Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ... |
168-211 | 2.51e-03 | |||
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Pssm-ID: 425727 [Multi-domain] Cd Length: 41 Bit Score: 35.51 E-value: 2.51e-03
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MCP2201-like_sensor | cd19411 | ligand-binding sensor domain of Comamonas testosteroni CNB-2 MCP2201 and similar ... |
183-266 | 5.55e-03 | |||
ligand-binding sensor domain of Comamonas testosteroni CNB-2 MCP2201 and similar chemoreceptors; This family includes the ligand-binding sensor domain of Comamonas testosteroni transmembrane chemoreceptor CNB-2 MCP2201 and similar chemoreceptors. The C. testosteroni methyl-accepting chemotaxis protein MCP2201 triggers chemotaxis towards tricarboxylic acid cycle intermediates such as citric acid and aromatic compounds. While the apo-form ligand binding domain (LBD) forms a typical four-helix bundle homodimer, similar to other chemoreceptors in the superfamily such as Escherichia coli Tar and Tsr, the citrate-bound LBD reveals a four-helix bundle homotrimer. This type of oligomerization has never been observed in other bacterial chemoreceptor LBD. Site-directed mutations of key amino acid residues have demonstrated the physiological importance of the homotrimer for chemotaxis. Pssm-ID: 438629 [Multi-domain] Cd Length: 138 Bit Score: 36.85 E-value: 5.55e-03
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Blast search parameters | ||||
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