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Conserved domains on  [gi|2082505266|ref|XP_042966344|]
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tetratricopeptide repeat protein 33 [Carya illinoinensis]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 708416)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  10517866|30708253
SCOP:  3001345

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Spy super family cl27809
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 24-187 3.75e-15

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG3914:

Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 73.49  E-value: 3.75e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266  24 PNLPFEHHQEDDEANNSSNTQLKIKENGSEGLASLDASNSSDAKQLAQSFQMQGNKLAEDGKYREALGKWEAALTLMPEL 103
Cdd:COG3914    32 LEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDN 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266 104 AVLHEQKAQILLEIGDSWNSLKAAARATELEPSWAEAWITLGRAQLNFGEPDSAIESFDKALSIKPDCEEAQDDRYTALH 183
Cdd:COG3914   112 AEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQ 191


                  ....
gi 2082505266 184 LIKR 187
Cdd:COG3914   192 DLGR 195
 
Name Accession Description Interval E-value
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 24-187 3.75e-15

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 73.49  E-value: 3.75e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266  24 PNLPFEHHQEDDEANNSSNTQLKIKENGSEGLASLDASNSSDAKQLAQSFQMQGNKLAEDGKYREALGKWEAALTLMPEL 103
Cdd:COG3914    32 LEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDN 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266 104 AVLHEQKAQILLEIGDSWNSLKAAARATELEPSWAEAWITLGRAQLNFGEPDSAIESFDKALSIKPDCEEAQDDRYTALH 183
Cdd:COG3914   112 AEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQ 191


                  ....
gi 2082505266 184 LIKR 187
Cdd:COG3914   192 DLGR 195
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 56-170 5.74e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 46.23  E-value: 5.74e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266  56 ASLDASNSSDAKQLAQSFQMQGNKlaedgkyREALGKWEAALTLMPELAVLHEQKAQILLEIGDSWNSLKAAARATELEP 135
Cdd:TIGR02917 390 TELDPENAAARTQLGISKLSQGDP-------SEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQP 462

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2082505266 136 SWAEAWITLGRAQLNFGEPDSAIESFDKALSIKPD 170
Cdd:TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD 497
TPR_1 pfam00515
Tetratricopeptide repeat;
138-171 1.64e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.79  E-value: 1.64e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 2082505266 138 AEAWITLGRAQLNFGEPDSAIESFDKALSIKPDC 171
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 83-182 2.86e-04

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 40.93  E-value: 2.86e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266  83 DGKYREALGKWEAALTLMPELAVLHEQKAQILLEIGDSWNSLKAAARATELEPSWAEAWITLGRAQLNFGEPDSAIESFD 162
Cdd:PLN03088   15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALE 94

                          90       100
                  ....*....|....*....|
gi 2082505266 163 KALSIKPDceeaqDDRYTAL 182
Cdd:PLN03088   95 KGASLAPG-----DSRFTKL 109
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 138-171 4.08e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.66  E-value: 4.08e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2082505266  138 AEAWITLGRAQLNFGEPDSAIESFDKALSIKPDC 171
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 109-170 6.00e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 39.92  E-value: 6.00e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2082505266 109 QKAQILLEIGDSWNSLKAAARATELEPSWAEAWITLGRAQLNFGEPDSAIESFDKALSIKPD 170
Cdd:cd24142     5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPD 66
 
Name Accession Description Interval E-value
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 24-187 3.75e-15

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 73.49  E-value: 3.75e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266  24 PNLPFEHHQEDDEANNSSNTQLKIKENGSEGLASLDASNSSDAKQLAQSFQMQGNKLAEDGKYREALGKWEAALTLMPEL 103
Cdd:COG3914    32 LEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDN 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266 104 AVLHEQKAQILLEIGDSWNSLKAAARATELEPSWAEAWITLGRAQLNFGEPDSAIESFDKALSIKPDCEEAQDDRYTALH 183
Cdd:COG3914   112 AEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQ 191


                  ....
gi 2082505266 184 LIKR 187
Cdd:COG3914   192 DLGR 195
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
69-190 1.40e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 70.04  E-value: 1.40e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266  69 LAQSFQMQGNKLAEDGKYREALGKWEAALTLMPELAVLHEQKAQILLEIGDSWNSLKAAARATELEPSWAEAWITLGRAQ 148
Cdd:COG0457     7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLAL 86

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 2082505266 149 LNFGEPDSAIESFDKALSIKPDCEEAQDDRYTALHLIKRRKQ 190
Cdd:COG0457    87 QALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDE 128
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
68-190 3.50e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 68.88  E-value: 3.50e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266  68 QLAQSFQMQGNKLAEDGKYREALGKWEAALTLMPELAVLHEQKAQILLEIGDSWNSLKAAARATELEPSWAEAWITLGRA 147
Cdd:COG0457    40 DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLA 119

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2082505266 148 QLNFGEPDSAIESFDKALSIKPDCEEAQDDRYTALHLIKRRKQ 190
Cdd:COG0457   120 LLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEE 162
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 77-175 4.78e-14

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 70.02  E-value: 4.78e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266  77 GNKLAEDGKYREALGKWEAALTLMPELAVLHEQKAQILLEIGDSWNSLKAAARATELEPSWAEAWITLGRAQLNFGEPDS 156
Cdd:COG3914   119 GNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEE 198

                          90
                  ....*....|....*....
gi 2082505266 157 AIESFDKALSIKPDCEEAQ 175
Cdd:COG3914   199 AIAAYRRALELDPDNADAH 217
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
7-194 9.91e-12

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 61.85  E-value: 9.91e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266   7 NNSKNSKKRSLASVSNFPNLPFEHHQEDDEANNSSNTQLKIKENGSEGLASLDASNSSDAKQLAQSFQMQGNKLAEDGKY 86
Cdd:COG4785    10 LALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDY 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266  87 REALGKWEAALTLMPELAVLHEQKAQILLEIGDSWNSLKAAARATELEPSWAEAWITLGRAQLNFGEPDSAIESFDKALS 166
Cdd:COG4785    90 DLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALE 169

                         170       180
                  ....*....|....*....|....*...
gi 2082505266 167 IKPDceeaQDDRYTALHLIKRRKQLHSA 194
Cdd:COG4785   170 LDPN----DPERALWLYLAERKLDPEKA 193
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 68-190 1.46e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 59.82  E-value: 1.46e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266  68 QLAQSFQMQGNKLAEDGKYREALGKWEAALTLMPELAVLHEQKAQILLEIGDSWNSLKAAARATELEPSWAEAWITLGRA 147
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2082505266 148 QLNFGEPDSAIESFDKALSIKPDCEEAQDDRYTALHLIKRRKQ 190
Cdd:COG4783    82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDE 124
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
97-187 3.16e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 58.09  E-value: 3.16e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266  97 LTLMPELAVLHEQKAQILLEIGDSWNSLKAAARATELEPSWAEAWITLGRAQLNFGEPDSAIESFDKALSIKPDCEEAQD 176
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90
                  ....*....|.
gi 2082505266 177 DRYTALHLIKR 187
Cdd:COG0457    81 NLGLALQALGR 91
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
68-165 3.73e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 57.71  E-value: 3.73e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266  68 QLAQSFQMQGNKLAEDGKYREALGKWEAALTLMPELAVLHEQKAQILLEIGDSWNSLKAAARATELEPSWAEAWITLGRA 147
Cdd:COG0457    74 DDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIA 153

                          90
                  ....*....|....*...
gi 2082505266 148 QLNFGEPDSAIESFDKAL 165
Cdd:COG0457   154 LEKLGRYEEALELLEKLE 171
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 53-191 8.96e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 57.05  E-value: 8.96e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266  53 EGLASLDASNSSDAKQLAQSFQMQGNklaedgkYREALGKWEAALTLMPELAVLHEQKAQILLEIGDSWNSLKAAARATE 132
Cdd:COG2956   100 EKLLELDPDDAEALRLLAEIYEQEGD-------WEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALK 172

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2082505266 133 LEPSWAEAWITLGRAQLNFGEPDSAIESFDKALSIKPDCEEAQDDRYTALHLIKRRKQL 191
Cdd:COG2956   173 LDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEA 231
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 70-170 2.54e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 53.47  E-value: 2.54e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266  70 AQSFQMQGNKLAEDGKYREALGKWEAALTLMPELAVLHEQKAQILLEIGDSWNSLKAAARATELEPSWAEAWITLGRAQL 149
Cdd:COG4235    17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF 96

                          90       100
                  ....*....|....*....|.
gi 2082505266 150 NFGEPDSAIESFDKALSIKPD 170
Cdd:COG4235    97 QQGDYAEAIAAWQKLLALLPA 117
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 70-170 2.63e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 53.66  E-value: 2.63e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266  70 AQSFQMQGNKLAEDGKYREALGKWEAALTLMPELAVLHEQKAQILLEIGDSWNSLKAAARATELEPSWAEAWITLGRAQL 149
Cdd:COG4783    38 PEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYR 117

                          90       100
                  ....*....|....*....|.
gi 2082505266 150 NFGEPDSAIESFDKALSIKPD 170
Cdd:COG4783   118 ALGRPDEAIAALEKALELDPD 138
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
80-170 2.64e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 52.48  E-value: 2.64e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266  80 LAEDGKYREALGKWEAALTLMPELAVLHEQKAQILLEIGDsWNSLKAAARATELEPSWAEAWITLGRAQLNFGEPDSAIE 159
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGR-YDEAIALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80

                          90
                  ....*....|.
gi 2082505266 160 SFDKALSIKPD 170
Cdd:COG3063    81 YLERALELDPS 91
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 79-175 1.09e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 53.58  E-value: 1.09e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266  79 KLAED----GKYREALGKWEAALTLMPELAVLHEQKAQILLEIGDSWNSLKAAARATELEPSWAEAWITLGRAQLNFGEP 154
Cdd:COG2956    81 ELAQDylkaGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDY 160

                          90       100
                  ....*....|....*....|.
gi 2082505266 155 DSAIESFDKALSIKPDCEEAQ 175
Cdd:COG2956   161 DEAIEALEKALKLDPDCARAL 181
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 26-169 1.23e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 52.27  E-value: 1.23e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266  26 LPFEHHQEDDEANNSSNTQLKIKENGSEGLASLDASNSSDAKQLAQSFQMQGNKLAEDGKYREALGKWEAALTLMPELAV 105
Cdd:COG5010    10 LPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPE 89

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2082505266 106 LHEQKAQILLEIGDSWNSLKAAARATELEPSWAEAWITLGRAQLNFGEPDSAIESFDKALSIKP 169
Cdd:COG5010    90 LYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 88-175 6.22e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 49.62  E-value: 6.22e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266  88 EALGKWEAALTLMPELAVLHEQKAQILLEIGDSWNSLKAAARATELEPSWAEAWITLGRAQLNFGEPDSAIESFDKALSI 167
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80


                  ....*...
gi 2082505266 168 KPDCEEAQ 175
Cdd:COG4235    81 DPDNPEAL 88
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 80-190 1.30e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 46.49  E-value: 1.30e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266  80 LAEDGKYREALGKWEAALTLMPELAVLHEQKAQILLEIGDSWNSLKAAARATELEPSWAEAWITLGRAQLNFGEPDSAIE 159
Cdd:COG5010    30 ALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKE 109

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2082505266 160 SFDKALSIKPDCEEAQDDRYTALHLIKRRKQ 190
Cdd:COG5010   110 YYEKALALSPDNPNAYSNLAALLLSLGQDDE 140
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 77-194 1.46e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.42  E-value: 1.46e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266  77 GNKLAEDGKYREALGKWEAALTLMPELAVLHEQKAQILLEIGDSWNSLKAAARATELEPSWAEAWITLGRAQLNFGEPDS 156
Cdd:COG2956   151 AELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEE 230

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 2082505266 157 AIESFDKALSIKPDceeaQDDRYTALHLIKRRKQLHSA 194
Cdd:COG2956   231 ALELLRKALELDPS----DDLLLALADLLERKEGLEAA 264
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 75-175 2.46e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.03  E-value: 2.46e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266  75 MQGNKLAEDGKYREALGKWEAALTLMPELAVLHEQKAQILLEIGDSWNSLKAAARATELEPSWAEAWITLGRAQLNFGEP 154
Cdd:COG2956    13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLL 92

                          90       100
                  ....*....|....*....|.
gi 2082505266 155 DSAIESFDKALSIKPDCEEAQ 175
Cdd:COG2956    93 DRAEELLEKLLELDPDDAEAL 113
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 56-170 5.74e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 46.23  E-value: 5.74e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266  56 ASLDASNSSDAKQLAQSFQMQGNKlaedgkyREALGKWEAALTLMPELAVLHEQKAQILLEIGDSWNSLKAAARATELEP 135
Cdd:TIGR02917 390 TELDPENAAARTQLGISKLSQGDP-------SEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQP 462

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2082505266 136 SWAEAWITLGRAQLNFGEPDSAIESFDKALSIKPD 170
Cdd:TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD 497
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 50-175 3.77e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.92  E-value: 3.77e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266  50 NGSEGLASLDASNSSDAKQLAQSFqMQGNKLAEDGKYREALGKWEAALTLMPELAVLHEQKAQILLEIGDSwNSLKAAAR 129
Cdd:TIGR02917 751 NTAEAVKTLEAWLKTHPNDAVLRT-ALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDP-RALEYAER 828

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 2082505266 130 ATELEPSWAEAWITLGRAQLNFGEPDSAIESFDKALSIKPDCEEAQ 175
Cdd:TIGR02917 829 ALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIR 874
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
113-190 7.94e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 40.15  E-value: 7.94e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2082505266 113 ILLEIGDSWNSLKAAARATELEPSWAEAWITLGRAQLNFGEPDSAIEsFDKALSIKPDCEEAQDDRYTALHLIKRRKQ 190
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDE 77
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 55-170 1.55e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 41.99  E-value: 1.55e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266  55 LASLDASNSSDAKQLAQSFQMQGNKLAEDGKYREALGKWEAALTLMPELAVLHEQKAQILLEIGDSWNSLKAAARATELE 134
Cdd:TIGR02917 110 LDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTAD 189

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2082505266 135 PSWAEAWITLGRAQLNFGEPDSAIESFDKALSIKPD 170
Cdd:TIGR02917 190 PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPN 225
TPR_1 pfam00515
Tetratricopeptide repeat;
138-171 1.64e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.79  E-value: 1.64e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 2082505266 138 AEAWITLGRAQLNFGEPDSAIESFDKALSIKPDC 171
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 56-170 2.15e-04

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 41.51  E-value: 2.15e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266  56 ASLDASNSSDaKQLAQSFQMQGNKLAE---DGKYREALGKWEAALT---LMPELAVLHEQKAQILLEIGDSWNSLKAAAR 129
Cdd:TIGR00990 278 AGLEDSNELD-EETGNGQLQLGLKSPEskaDESYEEAARAFEKALDlgkLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2082505266 130 ATELEPSWAEAWITLGRAQLNFGEPDSAIESFDKALSIKPD 170
Cdd:TIGR00990 357 SIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE 397
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 2-170 2.49e-04

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 41.51  E-value: 2.49e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266   2 KLTWKNNSKNSKKRSLASVSNF-----PNLPFEHHQEDDEANNSS-NTQLKIkengseGLASLDASNSSDAKQLAQSF-- 73
Cdd:TIGR00990 246 KAKEILETKPENLPSVTFVGNYlqsfrPKPRPAGLEDSNELDEETgNGQLQL------GLKSPESKADESYEEAARAFek 319

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266  74 QMQGNKLAE---------------DGKYREALGKWEAALTLMPELAVLHEQKAQILLEIGDSWNSLKAAARATELEPSwa 138
Cdd:TIGR00990 320 ALDLGKLGEkeaialnlrgtfkclKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-- 397

                         170       180       190
                  ....*....|....*....|....*....|....
gi 2082505266 139 EAWITLGRAQLNF--GEPDSAIESFDKALSIKPD 170
Cdd:TIGR00990 398 DPDIYYHRAQLHFikGEFAQAGKDYQKSIDLDPD 431
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 83-182 2.86e-04

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 40.93  E-value: 2.86e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266  83 DGKYREALGKWEAALTLMPELAVLHEQKAQILLEIGDSWNSLKAAARATELEPSWAEAWITLGRAQLNFGEPDSAIESFD 162
Cdd:PLN03088   15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALE 94

                          90       100
                  ....*....|....*....|
gi 2082505266 163 KALSIKPDceeaqDDRYTAL 182
Cdd:PLN03088   95 KGASLAPG-----DSRFTKL 109
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 138-171 4.08e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.66  E-value: 4.08e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2082505266  138 AEAWITLGRAQLNFGEPDSAIESFDKALSIKPDC 171
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 109-170 6.00e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 39.92  E-value: 6.00e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2082505266 109 QKAQILLEIGDSWNSLKAAARATELEPSWAEAWITLGRAQLNFGEPDSAIESFDKALSIKPD 170
Cdd:cd24142     5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPD 66
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 138-170 7.26e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 35.96  E-value: 7.26e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2082505266 138 AEAWITLGRAQLNFGEPDSAIESFDKALSIKPD 170
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 84-175 7.34e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.07  E-value: 7.34e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266  84 GKYREALGKWEAALTLMPELAVLHEQKAQILLEIGDSWNSLKAAARATELEPSWAEAWITLGRAQLNFGEPDSAIESFDK 163
Cdd:TIGR02917 547 GNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKK 626

                          90
                  ....*....|..
gi 2082505266 164 ALSIKPDCEEAQ 175
Cdd:TIGR02917 627 LLALQPDSALAL 638
TPR_8 pfam13181
Tetratricopeptide repeat;
138-170 1.14e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 35.45  E-value: 1.14e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2082505266 138 AEAWITLGRAQLNFGEPDSAIESFDKALSIKPD 170
Cdd:pfam13181   1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 60-189 4.33e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 37.76  E-value: 4.33e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266  60 ASNSSDAKQLAQSFQMqgnklaEDGKYREALGKWEAALTLMPELAVLHEQKAQILLEIGDSWNSLKAAARATELEPSWAE 139
Cdd:TIGR02917 325 APNSHQARRLLASIQL------RLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAA 398

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 2082505266 140 AWITLGRAQLNFGEPDSAIESFDKALSIKPDCEEAqdDRYTALHLIKRRK 189
Cdd:TIGR02917 399 ARTQLGISKLSQGDPSEAIADLETAAQLDPELGRA--DLLLILSYLRSGQ 446
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 66-190 6.61e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 36.89  E-value: 6.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266  66 AKQLAQSFQMQGNKLAEDGKYREALGKWEAALTLMPELAVLHEQKAQILLEIGDSWNSLKAAARATELEPSWAEAWI--T 143
Cdd:COG3914     4 AALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALleL 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 2082505266 144 LGRAQLNFGEPDSAIESFDKALSIKPDCEEAQDDRYTALHLIKRRKQ 190
Cdd:COG3914    84 AALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEE 130
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 79-178 8.88e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 34.97  E-value: 8.88e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505266  79 KLAEDGKYREALGKWEAALTLMPElavlHEQKAQILLEIGDSWNSLKAAARATEL----------EPSWAEAWITLGRAQ 148
Cdd:COG1729     2 ALLKAGDYDEAIAAFKAFLKRYPN----SPLAPDALYWLGEAYYALGDYDEAAEAfekllkrypdSPKAPDALLKLGLSY 77

                          90       100       110
                  ....*....|....*....|....*....|
gi 2082505266 149 LNFGEPDSAIESFDKALSIKPDCEEAQDDR 178
Cdd:COG1729    78 LELGDYDKARATLEELIKKYPDSEAAKEAR 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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