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Conserved domains on  [gi|1965564078|ref|XP_039072851|]
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serum response factor-binding protein 1 isoform X2 [Hyaena hyaena]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BUD22 super family cl25625
BUD22; BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. ...
 292-367 6.36e-07

BUD22; BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal. More recently it has been shown to be involved in ribosome biogenesis.


The actual alignment was detected with superfamily member pfam09073:

Pssm-ID: 401132  Cd Length: 426  Bit Score: 50.99  E-value: 6.36e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1965564078 292 GSKSSRREQAPKSRTPGFQQNEPELKNLFSKSAPRGLENTKQQsqlPLHPSWEASRRRKEQQsKIAVFQGKKITFD 367
Cdd:pfam09073 355 DAKRGAKAGEDRDESSFTGSNSRAPPPAKKKKDDKGAKSAVEG---ELHPSWEAKKKAKEKL-KNAKFQGKKITFD 426
 
Name Accession Description Interval E-value
BUD22 pfam09073
BUD22; BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. ...
 292-367 6.36e-07

BUD22; BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal. More recently it has been shown to be involved in ribosome biogenesis.


Pssm-ID: 401132  Cd Length: 426  Bit Score: 50.99  E-value: 6.36e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1965564078 292 GSKSSRREQAPKSRTPGFQQNEPELKNLFSKSAPRGLENTKQQsqlPLHPSWEASRRRKEQQsKIAVFQGKKITFD 367
Cdd:pfam09073 355 DAKRGAKAGEDRDESSFTGSNSRAPPPAKKKKDDKGAKSAVEG---ELHPSWEAKKKAKEKL-KNAKFQGKKITFD 426
 
Name Accession Description Interval E-value
BUD22 pfam09073
BUD22; BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. ...
 292-367 6.36e-07

BUD22; BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal. More recently it has been shown to be involved in ribosome biogenesis.


Pssm-ID: 401132  Cd Length: 426  Bit Score: 50.99  E-value: 6.36e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1965564078 292 GSKSSRREQAPKSRTPGFQQNEPELKNLFSKSAPRGLENTKQQsqlPLHPSWEASRRRKEQQsKIAVFQGKKITFD 367
Cdd:pfam09073 355 DAKRGAKAGEDRDESSFTGSNSRAPPPAKKKKDDKGAKSAVEG---ELHPSWEAKKKAKEKL-KNAKFQGKKITFD 426
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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