NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1958771523|ref|XP_038964306|]
View 

chemokine-like protein TAFA-4 isoform X1 [Rattus norvegicus]

Protein Classification

chemokine-like protein TAFA( domain architecture ID 10572247)

chemokine-like protein TAFA is a brain-specific secreted protein, similar to human chemokine-like protein TAFA-1, a regulatory factor that is involved in the modulation of neural stem-cell proliferation and differentiation

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
TAFA pfam12020
TAFA family; This family of secreted proteins are brain specific and thought to be chemokines. ...
 45-132 1.30e-50

TAFA family; This family of secreted proteins are brain specific and thought to be chemokines. These proteins are found in vertebrates. Proteins in this family are typically between 94 to 133 amino acids in length and contain a number of conserved cysteines.


:

Pssm-ID: 432266  Cd Length: 89  Bit Score: 156.13  E-value: 1.30e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958771523  45 QGTCEVVAVHRCCNKNRIEERSQTVKCSCFPGQVAGTTRAQPSCVEASIVIEKWWCHMDPCLEGEDCKVLPDSSGWSCSS 124
Cdd:pfam12020   1 AGTCEVIALDRCCNRNRIEERSQTARCSCFPGQVAGTTRAKPSCVDASIVLRKWWCDMEPCLDGEECKLLPDRSGWSCSS 80


                  ....*...
gi 1958771523 125 GNKVKTTK 132
Cdd:pfam12020  81 GGRVKTTK 88
 
Name Accession Description Interval E-value
TAFA pfam12020
TAFA family; This family of secreted proteins are brain specific and thought to be chemokines. ...
 45-132 1.30e-50

TAFA family; This family of secreted proteins are brain specific and thought to be chemokines. These proteins are found in vertebrates. Proteins in this family are typically between 94 to 133 amino acids in length and contain a number of conserved cysteines.


Pssm-ID: 432266  Cd Length: 89  Bit Score: 156.13  E-value: 1.30e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958771523  45 QGTCEVVAVHRCCNKNRIEERSQTVKCSCFPGQVAGTTRAQPSCVEASIVIEKWWCHMDPCLEGEDCKVLPDSSGWSCSS 124
Cdd:pfam12020   1 AGTCEVIALDRCCNRNRIEERSQTARCSCFPGQVAGTTRAKPSCVDASIVLRKWWCDMEPCLDGEECKLLPDRSGWSCSS 80


                  ....*...
gi 1958771523 125 GNKVKTTK 132
Cdd:pfam12020  81 GGRVKTTK 88
 
Name Accession Description Interval E-value
TAFA pfam12020
TAFA family; This family of secreted proteins are brain specific and thought to be chemokines. ...
 45-132 1.30e-50

TAFA family; This family of secreted proteins are brain specific and thought to be chemokines. These proteins are found in vertebrates. Proteins in this family are typically between 94 to 133 amino acids in length and contain a number of conserved cysteines.


Pssm-ID: 432266  Cd Length: 89  Bit Score: 156.13  E-value: 1.30e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958771523  45 QGTCEVVAVHRCCNKNRIEERSQTVKCSCFPGQVAGTTRAQPSCVEASIVIEKWWCHMDPCLEGEDCKVLPDSSGWSCSS 124
Cdd:pfam12020   1 AGTCEVIALDRCCNRNRIEERSQTARCSCFPGQVAGTTRAKPSCVDASIVLRKWWCDMEPCLDGEECKLLPDRSGWSCSS 80


                  ....*...
gi 1958771523 125 GNKVKTTK 132
Cdd:pfam12020  81 GGRVKTTK 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH