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Conserved domains on  [gi|1958643688|ref|XP_038961132|]
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ralBP1-associated Eps domain-containing protein 1 isoform X10 [Rattus norvegicus]

Protein Classification

EH domain-containing protein( domain architecture ID 12184509)

EH (Eps15 homology) domain-containing protein contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+; similar to Saccharomyces cerevisiae protein TAX4, which negatively regulates signaling through the cell integrity pathway

CATH:  1.10.238.10
Gene Ontology:  GO:0005515|GO:0005509
PubMed:  11911876|9397678|7568168
SCOP:  4000946

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
EH smart00027
Eps15 homology domain; Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe ...
 258-349 1.17e-31

Eps15 homology domain; Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.


:

Pssm-ID: 197477 [Multi-domain]  Cd Length: 96  Bit Score: 118.53  E-value: 1.17e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958643688  258 PWKITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLDEFCAAFHLVVARKNGY 337
Cdd:smart00027   1 PWAISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGY 80

                           90
                   ....*....|..
gi 1958643688  338 DLPEKLPESLMP 349
Cdd:smart00027  81 PIPASLPPSLIP 92
PRK07764 super family cl35613
DNA polymerase III subunits gamma and tau; Validated
 111-208 1.06e-03

DNA polymerase III subunits gamma and tau; Validated


The actual alignment was detected with superfamily member PRK07764:

Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.67  E-value: 1.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958643688 111 PPPPGRGQVKKAPGSHDAAQPRPSADQQEPASPVVSPQQSPPTSPHTWRKHNRHPsggnseRPLAGPGPFWSPFGDAQSG 190
Cdd:PRK07764  689 APAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPP------EPDDPPDPAGAPAQPPPPP 762

                          90
                  ....*....|....*...
gi 1958643688 191 SSAGDAVWSGHSPPPPQE 208
Cdd:PRK07764  763 APAPAAAPAAAPPPSPPS 780
 
Name Accession Description Interval E-value
EH smart00027
Eps15 homology domain; Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe ...
 258-349 1.17e-31

Eps15 homology domain; Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.


Pssm-ID: 197477 [Multi-domain]  Cd Length: 96  Bit Score: 118.53  E-value: 1.17e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958643688  258 PWKITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLDEFCAAFHLVVARKNGY 337
Cdd:smart00027   1 PWAISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGY 80

                           90
                   ....*....|..
gi 1958643688  338 DLPEKLPESLMP 349
Cdd:smart00027  81 PIPASLPPSLIP 92
EH cd00052
Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and ...
 269-335 3.55e-24

Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.


Pssm-ID: 238009 [Multi-domain]  Cd Length: 67  Bit Score: 96.13  E-value: 3.55e-24
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958643688 269 YVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLDEFCAAFHLVVARKN 335
Cdd:cd00052     1 YDQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIALALN 67
EF-hand_4 pfam12763
Cytoskeletal-regulatory complex EF hand; This is an efhand family from the N-terminal of actin ...
 260-349 9.45e-11

Cytoskeletal-regulatory complex EF hand; This is an efhand family from the N-terminal of actin cytoskeleton-regulatory complex END3 and similar proteins from fungi and closely related species.


Pssm-ID: 289529  Cd Length: 104  Bit Score: 59.31  E-value: 9.45e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958643688 260 KITDEQRQYYVNQFKTIQPDlNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLDEFCAAFHLVVARKNGY-- 337
Cdd:pfam12763   3 RLEEWEIKKYWEIFSGLKPE-NNKLTGDQVSPVLKNSRLPDDQLAKIWDLADIDSDGKLDFEEFCIAMRLIFDLVNGNia 81

                          90
                  ....*....|..
gi 1958643688 338 DLPEKLPESLMP 349
Cdd:pfam12763  82 DVPDELPDWLVP 93
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 111-208 1.06e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.67  E-value: 1.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958643688 111 PPPPGRGQVKKAPGSHDAAQPRPSADQQEPASPVVSPQQSPPTSPHTWRKHNRHPsggnseRPLAGPGPFWSPFGDAQSG 190
Cdd:PRK07764  689 APAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPP------EPDDPPDPAGAPAQPPPPP 762

                          90
                  ....*....|....*...
gi 1958643688 191 SSAGDAVWSGHSPPPPQE 208
Cdd:PRK07764  763 APAPAAAPAAAPPPSPPS 780
 
Name Accession Description Interval E-value
EH smart00027
Eps15 homology domain; Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe ...
 258-349 1.17e-31

Eps15 homology domain; Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.


Pssm-ID: 197477 [Multi-domain]  Cd Length: 96  Bit Score: 118.53  E-value: 1.17e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958643688  258 PWKITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLDEFCAAFHLVVARKNGY 337
Cdd:smart00027   1 PWAISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGY 80

                           90
                   ....*....|..
gi 1958643688  338 DLPEKLPESLMP 349
Cdd:smart00027  81 PIPASLPPSLIP 92
EH cd00052
Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and ...
 269-335 3.55e-24

Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.


Pssm-ID: 238009 [Multi-domain]  Cd Length: 67  Bit Score: 96.13  E-value: 3.55e-24
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958643688 269 YVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLDEFCAAFHLVVARKN 335
Cdd:cd00052     1 YDQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIALALN 67
EF-hand_4 pfam12763
Cytoskeletal-regulatory complex EF hand; This is an efhand family from the N-terminal of actin ...
 260-349 9.45e-11

Cytoskeletal-regulatory complex EF hand; This is an efhand family from the N-terminal of actin cytoskeleton-regulatory complex END3 and similar proteins from fungi and closely related species.


Pssm-ID: 289529  Cd Length: 104  Bit Score: 59.31  E-value: 9.45e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958643688 260 KITDEQRQYYVNQFKTIQPDlNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLDEFCAAFHLVVARKNGY-- 337
Cdd:pfam12763   3 RLEEWEIKKYWEIFSGLKPE-NNKLTGDQVSPVLKNSRLPDDQLAKIWDLADIDSDGKLDFEEFCIAMRLIFDLVNGNia 81

                          90
                  ....*....|..
gi 1958643688 338 DLPEKLPESLMP 349
Cdd:pfam12763  82 DVPDELPDWLVP 93
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 111-208 1.06e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.67  E-value: 1.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958643688 111 PPPPGRGQVKKAPGSHDAAQPRPSADQQEPASPVVSPQQSPPTSPHTWRKHNRHPsggnseRPLAGPGPFWSPFGDAQSG 190
Cdd:PRK07764  689 APAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPP------EPDDPPDPAGAPAQPPPPP 762

                          90
                  ....*....|....*...
gi 1958643688 191 SSAGDAVWSGHSPPPPQE 208
Cdd:PRK07764  763 APAPAAAPAAAPPPSPPS 780
EF-hand_7 pfam13499
EF-hand domain pair;
273-327 2.09e-03

EF-hand domain pair;


Pssm-ID: 463900 [Multi-domain]  Cd Length: 67  Bit Score: 37.23  E-value: 2.09e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1958643688 273 FKTIQPDLNGFIP----GSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLDEFCAAF 327
Cdd:pfam13499   8 FKLLDSDGDGYLDveelKKLLRKLEEGEPLSDEEVEELFKEFDLDKDGRISFEEFLELY 66
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 91-258 8.24e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.58  E-value: 8.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958643688  91 RHAASYSSDAENQSAYAGVIPPPPGRGQVkkapgshdAAQPRPSADQQEPASPVVSPQQSPPTSPHTWrkHNRHPSGGNS 170
Cdd:PRK07764  581 DWQVEAVVGPAPGAAGGEGPPAPASSGPP--------EEAARPAAPAAPAAPAAPAPAGAAAAPAEAS--AAPAPGVAAP 650

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958643688 171 ERPLAGPGPFWSPFGDAQSGSSAGDAVWSGHSPPPPQENWVSFADTPPTSALLTMHPASVQDQTTVRTVASATTANEIRR 250
Cdd:PRK07764  651 EHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASA 730


                  ....*...
gi 1958643688 251 QSSSYDDP 258
Cdd:PRK07764  731 PSPAADDP 738
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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