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Conserved domains on  [gi|1958676338|ref|XP_038947999|]
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aftiphilin isoform X4 [Rattus norvegicus]

Protein Classification

Clathrin_bdg domain-containing protein( domain architecture ID 10633337)

Clathrin_bdg domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Clathrin_bdg pfam15045
Clathrin-binding box of Aftiphilin, vesicle trafficking; Aftiphilin forms a stable complex ...
 696-758 5.47e-21

Clathrin-binding box of Aftiphilin, vesicle trafficking; Aftiphilin forms a stable complex with p200 and gamma-synergin. This family contains a clathrin box, with two identified clathrin-binding motifs. This family of proteins is found in eukaryotes.


:

Pssm-ID: 464467  Cd Length: 80  Bit Score: 87.84  E-value: 5.47e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958676338 696 RDVWAELQDIHDAHGLRYQWGGSHSNKKLLCSLGIDTRNILFTGNKK-----QPVIVPMYAAGLESLP 758
Cdd:pfam15045   2 RKLWRALQDTDGTSALRCLWSKSHCQENLLLVLGIDARQKLLSGDQNhilegSDLKEPEFAAGVSGFP 69
 
Name Accession Description Interval E-value
Clathrin_bdg pfam15045
Clathrin-binding box of Aftiphilin, vesicle trafficking; Aftiphilin forms a stable complex ...
 696-758 5.47e-21

Clathrin-binding box of Aftiphilin, vesicle trafficking; Aftiphilin forms a stable complex with p200 and gamma-synergin. This family contains a clathrin box, with two identified clathrin-binding motifs. This family of proteins is found in eukaryotes.


Pssm-ID: 464467  Cd Length: 80  Bit Score: 87.84  E-value: 5.47e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958676338 696 RDVWAELQDIHDAHGLRYQWGGSHSNKKLLCSLGIDTRNILFTGNKK-----QPVIVPMYAAGLESLP 758
Cdd:pfam15045   2 RKLWRALQDTDGTSALRCLWSKSHCQENLLLVLGIDARQKLLSGDQNhilegSDLKEPEFAAGVSGFP 69
 
Name Accession Description Interval E-value
Clathrin_bdg pfam15045
Clathrin-binding box of Aftiphilin, vesicle trafficking; Aftiphilin forms a stable complex ...
 696-758 5.47e-21

Clathrin-binding box of Aftiphilin, vesicle trafficking; Aftiphilin forms a stable complex with p200 and gamma-synergin. This family contains a clathrin box, with two identified clathrin-binding motifs. This family of proteins is found in eukaryotes.


Pssm-ID: 464467  Cd Length: 80  Bit Score: 87.84  E-value: 5.47e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958676338 696 RDVWAELQDIHDAHGLRYQWGGSHSNKKLLCSLGIDTRNILFTGNKK-----QPVIVPMYAAGLESLP 758
Cdd:pfam15045   2 RKLWRALQDTDGTSALRCLWSKSHCQENLLLVLGIDARQKLLSGDQNhilegSDLKEPEFAAGVSGFP 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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