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Conserved domains on  [gi|1958648771|ref|XP_038943709|]
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lysine-rich nucleolar protein 1 isoform X1 [Rattus norvegicus]

Protein Classification

small acidic/RSRC2 family protein( domain architecture ID 10634575)

small acidic/RSRC2 family protein similar to small acidic protein and arginine/serine-rich coiled-coil protein 2 (RSRC2)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SMAP pfam15477
Small acidic protein family; This domain family is found in eukaryotes, and is approximately ...
 367-440 1.74e-20

Small acidic protein family; This domain family is found in eukaryotes, and is approximately 70 amino acids in length. There is a single completely conserved residue G that may be functionally important.


:

Pssm-ID: 464738 [Multi-domain]  Cd Length: 73  Bit Score: 85.05  E-value: 1.74e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958648771 367 WDTAGF-ENEEQKLKFLKLMGGFKHLSPSfnrPPSMTVRSNMALDKKSSDTLQQSLQQDYDRAMSW-KYSRGAGLG 440
Cdd:pfam15477   1 WDTAAFdGDAERQEKFLRLMGGKKAGSSG---SAESSTRPNMALSKKKQEKLQQDLEQQYEAAMKEtHGGRGVGLG 73
 
Name Accession Description Interval E-value
SMAP pfam15477
Small acidic protein family; This domain family is found in eukaryotes, and is approximately ...
 367-440 1.74e-20

Small acidic protein family; This domain family is found in eukaryotes, and is approximately 70 amino acids in length. There is a single completely conserved residue G that may be functionally important.


Pssm-ID: 464738 [Multi-domain]  Cd Length: 73  Bit Score: 85.05  E-value: 1.74e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958648771 367 WDTAGF-ENEEQKLKFLKLMGGFKHLSPSfnrPPSMTVRSNMALDKKSSDTLQQSLQQDYDRAMSW-KYSRGAGLG 440
Cdd:pfam15477   1 WDTAAFdGDAERQEKFLRLMGGKKAGSSG---SAESSTRPNMALSKKKQEKLQQDLEQQYEAAMKEtHGGRGVGLG 73
 
Name Accession Description Interval E-value
SMAP pfam15477
Small acidic protein family; This domain family is found in eukaryotes, and is approximately ...
 367-440 1.74e-20

Small acidic protein family; This domain family is found in eukaryotes, and is approximately 70 amino acids in length. There is a single completely conserved residue G that may be functionally important.


Pssm-ID: 464738 [Multi-domain]  Cd Length: 73  Bit Score: 85.05  E-value: 1.74e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958648771 367 WDTAGF-ENEEQKLKFLKLMGGFKHLSPSfnrPPSMTVRSNMALDKKSSDTLQQSLQQDYDRAMSW-KYSRGAGLG 440
Cdd:pfam15477   1 WDTAAFdGDAERQEKFLRLMGGKKAGSSG---SAESSTRPNMALSKKKQEKLQQDLEQQYEAAMKEtHGGRGVGLG 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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