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Conserved domains on  [gi|1955727452|ref|XP_038869709|]
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sushi domain-containing protein 2-like [Salvelinus namaycush]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AMOP pfam03782
AMOP domain; This domain may have a role in cell adhesion. It is called the AMOP domain after ...
 293-433 6.51e-71

AMOP domain; This domain may have a role in cell adhesion. It is called the AMOP domain after Adhesion associated domain in MUC4 and Other Proteins. This domain is extracellular and contains a number of cysteines that probably form disulphide bridges.


:

Pssm-ID: 461048  Cd Length: 143  Bit Score: 229.55  E-value: 6.51e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955727452 293 ALDRCLAWDILEKSLPNFLEEVVDCPCTLAQARADTGRFHTDYGCDMEKGSV--CTYHPGSVHCVRAVHASPvYRAGQQC 370
Cdd:pfam03782   1 AHDMCDNWYNCDRFLKNFLAELPSCPCTLPQALLDKGRFMPDPRCDLDWNPKetCTYHPGAVHCVRSGLPSF-SGSGQQC 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1955727452 371 CYDSTGAQVLTGDSIGGSTPDRAHDWGSPPYRDPPRIPSLSHWMYDVLTFYYCCLWSD-HCQVY 433
Cdd:pfam03782  80 CYDDDGYLMLTYDSFWGSTPDRGHDWGAPPYRSPPFVPGLSHWLHDVMPFYYCCLWADeDCERY 143
VWD super family cl47498
von Willebrand factor type D domain; Swiss:P17554 contains a vwd domain. Its function is ...
 455-617 4.45e-13

von Willebrand factor type D domain; Swiss:P17554 contains a vwd domain. Its function is unrelated but the similarity is very strong by several methods.


The actual alignment was detected with superfamily member pfam00094:

Pssm-ID: 459671 [Multi-domain]  Cd Length: 154  Bit Score: 67.40  E-value: 4.45e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955727452 455 GDPHFLTFDGVRYTFNGKGEYYLvlspdrglsVQGRTEQVKLENGTLSKATRLSAVAMRERSsdvIEVRQAEQQNQL--- 531
Cdd:pfam00094   5 GDPHYVTFDGVKYTFPGTCTYVL---------AKDCSEEPDFSFSVTNKNCNGGASGVCLKS---VTVIVGDLEITLqkg 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955727452 532 -EVLRNQQVlsFTEQSWMDLHGVFLYSptPQNVTVMFSSGVGVEVRGRegGAMAVTVLLPSNYTNLTQGLLGQMNSDPLD 610
Cdd:pfam00094  73 gTVLVNGQK--VSLPYKSDGGEVEILG--SGFVVVDLSPGVGLQVDGD--GRGQLFVTLSPSYQGKTCGLCGNYNGNQED 146


                  ....*..
gi 1955727452 611 DLLTSLG 617
Cdd:pfam00094 147 DFMTPDG 153
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 732-786 3.73e-12

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


:

Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 61.71  E-value: 3.73e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1955727452 732 CGWLASPRYGEKIG--TRYLEGSTVSFTCNSGYVLYGSPERTCLPSGEWTGEEASCI 786
Cdd:cd00033     1 CPPPPVPENGTVTGskGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57
Somatomedin_B pfam01033
Somatomedin B domain;
26-59 4.54e-05

Somatomedin B domain;


:

Pssm-ID: 460034  Cd Length: 40  Bit Score: 41.13  E-value: 4.54e-05
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1955727452  26 SCDGQCGET---QGTCSCHATCVSLLTCCGDYRQYCL 59
Cdd:pfam01033   2 SCKGRCGESfdrGRLCQCDDDCVKYGDCCPDYESLCL 38
 
Name Accession Description Interval E-value
AMOP pfam03782
AMOP domain; This domain may have a role in cell adhesion. It is called the AMOP domain after ...
 293-433 6.51e-71

AMOP domain; This domain may have a role in cell adhesion. It is called the AMOP domain after Adhesion associated domain in MUC4 and Other Proteins. This domain is extracellular and contains a number of cysteines that probably form disulphide bridges.


Pssm-ID: 461048  Cd Length: 143  Bit Score: 229.55  E-value: 6.51e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955727452 293 ALDRCLAWDILEKSLPNFLEEVVDCPCTLAQARADTGRFHTDYGCDMEKGSV--CTYHPGSVHCVRAVHASPvYRAGQQC 370
Cdd:pfam03782   1 AHDMCDNWYNCDRFLKNFLAELPSCPCTLPQALLDKGRFMPDPRCDLDWNPKetCTYHPGAVHCVRSGLPSF-SGSGQQC 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1955727452 371 CYDSTGAQVLTGDSIGGSTPDRAHDWGSPPYRDPPRIPSLSHWMYDVLTFYYCCLWSD-HCQVY 433
Cdd:pfam03782  80 CYDDDGYLMLTYDSFWGSTPDRGHDWGAPPYRSPPFVPGLSHWLHDVMPFYYCCLWADeDCERY 143
AMOP smart00723
Adhesion-associated domain present in MUC4 and other proteins;
291-437 1.06e-50

Adhesion-associated domain present in MUC4 and other proteins;


Pssm-ID: 128962  Cd Length: 154  Bit Score: 174.71  E-value: 1.06e-50
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955727452  291 AWALDRCLAWDILEKSLPNF---LEEVVDCPCTLAQARADTGRFHTDYGCDMEKGSVCTYHPGSVHCVRAVHASPVYRAG 367
Cdd:smart00723   3 PWDRDMCLRWLECDGQLPNFlwdLEDLPSCPCSLPQAVADSGRFRPDDACDPDERILCTYHPGARHCIRSMQSVESTGAG 82

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1955727452  368 QQCCYDSTGaQVLTGDSIGGSTPDRAHDWGSPPYRDPPRIPSLSHWMYDVLTFYYCCLWSDH---CQVYFTHR 437
Cdd:smart00723  83 QVCCYDAWG-QLMTTDDQPVIKPRRGHGAGTPPYIGSTEVPGLSHFKNDVEPYILCCKWADRpqrCTMYYWRR 154
VWD pfam00094
von Willebrand factor type D domain; Swiss:P17554 contains a vwd domain. Its function is ...
 455-617 4.45e-13

von Willebrand factor type D domain; Swiss:P17554 contains a vwd domain. Its function is unrelated but the similarity is very strong by several methods.


Pssm-ID: 459671 [Multi-domain]  Cd Length: 154  Bit Score: 67.40  E-value: 4.45e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955727452 455 GDPHFLTFDGVRYTFNGKGEYYLvlspdrglsVQGRTEQVKLENGTLSKATRLSAVAMRERSsdvIEVRQAEQQNQL--- 531
Cdd:pfam00094   5 GDPHYVTFDGVKYTFPGTCTYVL---------AKDCSEEPDFSFSVTNKNCNGGASGVCLKS---VTVIVGDLEITLqkg 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955727452 532 -EVLRNQQVlsFTEQSWMDLHGVFLYSptPQNVTVMFSSGVGVEVRGRegGAMAVTVLLPSNYTNLTQGLLGQMNSDPLD 610
Cdd:pfam00094  73 gTVLVNGQK--VSLPYKSDGGEVEILG--SGFVVVDLSPGVGLQVDGD--GRGQLFVTLSPSYQGKTCGLCGNYNGNQED 146


                  ....*..
gi 1955727452 611 DLLTSLG 617
Cdd:pfam00094 147 DFMTPDG 153
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 732-786 3.73e-12

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 61.71  E-value: 3.73e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1955727452 732 CGWLASPRYGEKIG--TRYLEGSTVSFTCNSGYVLYGSPERTCLPSGEWTGEEASCI 786
Cdd:cd00033     1 CPPPPVPENGTVTGskGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57
VWD smart00216
von Willebrand factor (vWF) type D domain; Von Willebrand factor contains several type D ...
 446-615 9.49e-11

von Willebrand factor (vWF) type D domain; Von Willebrand factor contains several type D domains: D1 and D2 are present within the N-terminal propeptide whereas the remaining D domains are required for multimerisation.


Pssm-ID: 214566 [Multi-domain]  Cd Length: 163  Bit Score: 61.26  E-value: 9.49e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955727452  446 TPPTAGAVlGDPHFLTFDGVRYTFNGKGEYYLVLS-PDRG-LSVQGRTEQVklengtLSKATRLSAVAMRERSSDVIEVr 523
Cdd:smart00216   8 CSPTCSVS-GDPHYTTFDGVAYTFPGNCYYVLAQDcSSEPtFSVLLKNVPC------GGGATCLKSVKVELNGDEIELK- 79

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955727452  524 qaEQQNQLEVLRNQQVLSFTEQSWmDLH-----GVFLYSPTPQNVTVMFSsgvgvevrgregGAMAVTVLLPSNYTNLTQ 598
Cdd:smart00216  80 --DDNGKVTVNGQQVSLPYKTSDG-SIQirssgGYLVVITSLGLIQVTFD------------GLTLLSVQLPSKYRGKTC 144

                          170
                   ....*....|....*..
gi 1955727452  599 GLLGQMNSDPLDDLLTS 615
Cdd:smart00216 145 GLCGNFDGEPEDDFRTP 161
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 732-785 4.07e-10

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 56.00  E-value: 4.07e-10
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1955727452  732 CGWLASPRYGEKIG--TRYLEGSTVSFTCNSGYVLYGSPERTCLPSGEWTGEEASC 785
Cdd:smart00032   1 CPPPPDIENGTVTSssGTYSYGDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
746-785 4.98e-08

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 50.19  E-value: 4.98e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1955727452 746 TRYLEGSTVSFTCNSGYVLYGSPERTCLPSGEWTGEEASC 785
Cdd:pfam00084  17 NEYNYGASVSYECDPGYRLVGSPTITCQEDGTWSPPFPEC 56
Somatomedin_B pfam01033
Somatomedin B domain;
26-59 4.54e-05

Somatomedin B domain;


Pssm-ID: 460034  Cd Length: 40  Bit Score: 41.13  E-value: 4.54e-05
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1955727452  26 SCDGQCGET---QGTCSCHATCVSLLTCCGDYRQYCL 59
Cdd:pfam01033   2 SCKGRCGESfdrGRLCQCDDDCVKYGDCCPDYESLCL 38
SO smart00201
Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from ...
 26-59 3.45e-03

Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from vitronectin, that is a growth hormone-dependent serum factor with protease-inhibiting activity.


Pssm-ID: 197571  Cd Length: 43  Bit Score: 36.20  E-value: 3.45e-03
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 1955727452   26 SCDGQCGETQ---GTCSCHATCVSLLTCCGDYRQYCL 59
Cdd:smart00201   4 SCKGRCGESFnegNACRCDALCLSYGDCCTDYESVCK 40
 
Name Accession Description Interval E-value
AMOP pfam03782
AMOP domain; This domain may have a role in cell adhesion. It is called the AMOP domain after ...
 293-433 6.51e-71

AMOP domain; This domain may have a role in cell adhesion. It is called the AMOP domain after Adhesion associated domain in MUC4 and Other Proteins. This domain is extracellular and contains a number of cysteines that probably form disulphide bridges.


Pssm-ID: 461048  Cd Length: 143  Bit Score: 229.55  E-value: 6.51e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955727452 293 ALDRCLAWDILEKSLPNFLEEVVDCPCTLAQARADTGRFHTDYGCDMEKGSV--CTYHPGSVHCVRAVHASPvYRAGQQC 370
Cdd:pfam03782   1 AHDMCDNWYNCDRFLKNFLAELPSCPCTLPQALLDKGRFMPDPRCDLDWNPKetCTYHPGAVHCVRSGLPSF-SGSGQQC 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1955727452 371 CYDSTGAQVLTGDSIGGSTPDRAHDWGSPPYRDPPRIPSLSHWMYDVLTFYYCCLWSD-HCQVY 433
Cdd:pfam03782  80 CYDDDGYLMLTYDSFWGSTPDRGHDWGAPPYRSPPFVPGLSHWLHDVMPFYYCCLWADeDCERY 143
AMOP smart00723
Adhesion-associated domain present in MUC4 and other proteins;
291-437 1.06e-50

Adhesion-associated domain present in MUC4 and other proteins;


Pssm-ID: 128962  Cd Length: 154  Bit Score: 174.71  E-value: 1.06e-50
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955727452  291 AWALDRCLAWDILEKSLPNF---LEEVVDCPCTLAQARADTGRFHTDYGCDMEKGSVCTYHPGSVHCVRAVHASPVYRAG 367
Cdd:smart00723   3 PWDRDMCLRWLECDGQLPNFlwdLEDLPSCPCSLPQAVADSGRFRPDDACDPDERILCTYHPGARHCIRSMQSVESTGAG 82

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1955727452  368 QQCCYDSTGaQVLTGDSIGGSTPDRAHDWGSPPYRDPPRIPSLSHWMYDVLTFYYCCLWSDH---CQVYFTHR 437
Cdd:smart00723  83 QVCCYDAWG-QLMTTDDQPVIKPRRGHGAGTPPYIGSTEVPGLSHFKNDVEPYILCCKWADRpqrCTMYYWRR 154
VWD pfam00094
von Willebrand factor type D domain; Swiss:P17554 contains a vwd domain. Its function is ...
 455-617 4.45e-13

von Willebrand factor type D domain; Swiss:P17554 contains a vwd domain. Its function is unrelated but the similarity is very strong by several methods.


Pssm-ID: 459671 [Multi-domain]  Cd Length: 154  Bit Score: 67.40  E-value: 4.45e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955727452 455 GDPHFLTFDGVRYTFNGKGEYYLvlspdrglsVQGRTEQVKLENGTLSKATRLSAVAMRERSsdvIEVRQAEQQNQL--- 531
Cdd:pfam00094   5 GDPHYVTFDGVKYTFPGTCTYVL---------AKDCSEEPDFSFSVTNKNCNGGASGVCLKS---VTVIVGDLEITLqkg 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955727452 532 -EVLRNQQVlsFTEQSWMDLHGVFLYSptPQNVTVMFSSGVGVEVRGRegGAMAVTVLLPSNYTNLTQGLLGQMNSDPLD 610
Cdd:pfam00094  73 gTVLVNGQK--VSLPYKSDGGEVEILG--SGFVVVDLSPGVGLQVDGD--GRGQLFVTLSPSYQGKTCGLCGNYNGNQED 146


                  ....*..
gi 1955727452 611 DLLTSLG 617
Cdd:pfam00094 147 DFMTPDG 153
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 732-786 3.73e-12

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 61.71  E-value: 3.73e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1955727452 732 CGWLASPRYGEKIG--TRYLEGSTVSFTCNSGYVLYGSPERTCLPSGEWTGEEASCI 786
Cdd:cd00033     1 CPPPPVPENGTVTGskGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57
VWD smart00216
von Willebrand factor (vWF) type D domain; Von Willebrand factor contains several type D ...
 446-615 9.49e-11

von Willebrand factor (vWF) type D domain; Von Willebrand factor contains several type D domains: D1 and D2 are present within the N-terminal propeptide whereas the remaining D domains are required for multimerisation.


Pssm-ID: 214566 [Multi-domain]  Cd Length: 163  Bit Score: 61.26  E-value: 9.49e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955727452  446 TPPTAGAVlGDPHFLTFDGVRYTFNGKGEYYLVLS-PDRG-LSVQGRTEQVklengtLSKATRLSAVAMRERSSDVIEVr 523
Cdd:smart00216   8 CSPTCSVS-GDPHYTTFDGVAYTFPGNCYYVLAQDcSSEPtFSVLLKNVPC------GGGATCLKSVKVELNGDEIELK- 79

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955727452  524 qaEQQNQLEVLRNQQVLSFTEQSWmDLH-----GVFLYSPTPQNVTVMFSsgvgvevrgregGAMAVTVLLPSNYTNLTQ 598
Cdd:smart00216  80 --DDNGKVTVNGQQVSLPYKTSDG-SIQirssgGYLVVITSLGLIQVTFD------------GLTLLSVQLPSKYRGKTC 144

                          170
                   ....*....|....*..
gi 1955727452  599 GLLGQMNSDPLDDLLTS 615
Cdd:smart00216 145 GLCGNFDGEPEDDFRTP 161
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 732-785 4.07e-10

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 56.00  E-value: 4.07e-10
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1955727452  732 CGWLASPRYGEKIG--TRYLEGSTVSFTCNSGYVLYGSPERTCLPSGEWTGEEASC 785
Cdd:smart00032   1 CPPPPDIENGTVTSssGTYSYGDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
746-785 4.98e-08

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 50.19  E-value: 4.98e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1955727452 746 TRYLEGSTVSFTCNSGYVLYGSPERTCLPSGEWTGEEASC 785
Cdd:pfam00084  17 NEYNYGASVSYECDPGYRLVGSPTITCQEDGTWSPPFPEC 56
Somatomedin_B pfam01033
Somatomedin B domain;
26-59 4.54e-05

Somatomedin B domain;


Pssm-ID: 460034  Cd Length: 40  Bit Score: 41.13  E-value: 4.54e-05
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1955727452  26 SCDGQCGET---QGTCSCHATCVSLLTCCGDYRQYCL 59
Cdd:pfam01033   2 SCKGRCGESfdrGRLCQCDDDCVKYGDCCPDYESLCL 38
SO smart00201
Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from ...
 26-59 3.45e-03

Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from vitronectin, that is a growth hormone-dependent serum factor with protease-inhibiting activity.


Pssm-ID: 197571  Cd Length: 43  Bit Score: 36.20  E-value: 3.45e-03
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 1955727452   26 SCDGQCGETQ---GTCSCHATCVSLLTCCGDYRQYCL 59
Cdd:smart00201   4 SCKGRCGESFnegNACRCDALCLSYGDCCTDYESVCK 40
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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