|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
281-795 |
7.43e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 70.94 E-value: 7.43e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 281 KSPEKEKQTPLKSLEEKNVEAE----KTLENGVLELSKPLGEEEPRMED-----QELMSPEHTLETVSFLGKENQEVVRS 351
Cdd:PTZ00121 1439 KAEEAKKADEAKKKAEEAKKAEeakkKAEEAKKADEAKKKAEEAKKADEakkkaEEAKKKADEAKKAAEAKKKADEAKKA 1518
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 352 SEEQNLESLITFKEESQYPLGGPEAEDQMLERLVEKEDQRFPRSPEEDQQAFRPLEKENQEPLRFEEAedqvleRLIEKE 431
Cdd:PTZ00121 1519 EEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEA------KKAEEA 1592
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 432 R-QESLKSPEEEDQQAFRLLEKENQEPLRFEdaedQVLERLIEKERQESLKSPEEEdqqafrllEKENQEPLRFEEAEDQ 510
Cdd:PTZ00121 1593 RiEEVMKLYEEEKKMKAEEAKKAEEAKIKAE----ELKKAEEEKKKVEQLKKKEAE--------EKKKAEELKKAEEENK 1660
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 511 VlerlvekeSQESLKSPEEEDQRTGKPLEKENQESLRSldENQETIVLLESKNQRPLRSLEVEEEEQ-RIVKPLEKVSQV 589
Cdd:PTZ00121 1661 I--------KAAEEAKKAEEDKKKAEEAKKAEEDEKKA--AEALKKEAEEAKKAEELKKKEAEEKKKaEELKKAEEENKI 1730
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 590 SLESLEKENVQSPRYLEE---DDHMIKSLLEDKTHEILGSLEDRNGENFIPPENetqgslrpPEEEDQRIVNHLEKESQE 666
Cdd:PTZ00121 1731 KAEEAKKEAEEDKKKAEEakkDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEE--------LDEEDEKRRMEVDKKIKD 1802
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 667 FLRSPEAEEEEeqvmvrsleGENHDPLSSVVKEEQMAESKLENESQDSRKSLEDESQETFGSLEKENLESLRSLAGQDQE 746
Cdd:PTZ00121 1803 IFDNFANIIEG---------GKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKE 1873
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 1907149237 747 EQKLEQETQQPLRAVEDEQMTVNPPEKVDPELPKPLRNDQEVVRSLDKE 795
Cdd:PTZ00121 1874 KDLKEDDEEEIEEADEIEKIDKDDIEREIPNNNMAGKNNDIIDDKLDKD 1922
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
375-613 |
1.53e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 49.74 E-value: 1.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 375 EAEDQMLERLVEKEDQRFPRSPEEDQQAFRPLEKE--NQEPLRFEEAEDQVLER--LIEKERQ---ESLKSPEEEDQQAF 447
Cdd:pfam17380 397 ELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEarQREVRRLEEERAREMERvrLEEQERQqqvERLRQQEEERKRKK 476
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 448 RLLEKENQEPLRFEDAEDQVLERLIEKERQESLkspeeEDQQAFRLLEKEnqeplrFEEAEDQVLERLVEKESQESLKSP 527
Cdd:pfam17380 477 LELEKEKRDRKRAEEQRRKILEKELEERKQAMI-----EEERKRKLLEKE------MEERQKAIYEEERRREAEEERRKQ 545
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 528 EEEDQRtgkpleKENQESLRSLDENQETIVLLEskNQRPLRSLEVEEEEQRivKPLEKVSQV-SLESLEKENVQSPRYLE 606
Cdd:pfam17380 546 QEMEER------RRIQEQMRKATEERSRLEAME--REREMMRQIVESEKAR--AEYEATTPItTIKPIYRPRISEYQPPD 615
|
....*..
gi 1907149237 607 EDDHMIK 613
Cdd:pfam17380 616 VESHMIR 622
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
414-635 |
1.31e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.39 E-value: 1.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 414 LRFEEAEDQVLERLIEKERQESLKSPEEEDQQAF-----RLLEKENQEPLRFEDAEDQVLERLIEKER-QESLKSPEEED 487
Cdd:COG1196 281 LELEEAQAEEYELLAELARLEQDIARLEERRRELeerleELEEELAELEEELEELEEELEELEEELEEaEEELEEAEAEL 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 488 QQAFRLLEKENQEPLRFEEAEDQVLERLVEKESQES-LKSPEEEDQRTgkpLEKENQESLRSLDENQETIVLLESKNQRP 566
Cdd:COG1196 361 AEAEEALLEAEAELAEAEEELEELAEELLEALRAAAeLAAQLEELEEA---EEALLERLERLEEELEELEEALAELEEEE 437
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907149237 567 LRSLEVEEEEQRIVKPLEKVSQVSLESLEKENVQSPRYLEEDDHMIKSLLEDKTHEILGSLEDRNGENF 635
Cdd:COG1196 438 EEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGF 506
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
375-765 |
3.87e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.88 E-value: 3.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 375 EAEDQMLERLVEKEDQRFPRSP-EEDQQAFRPLEKENQEPLrfeeAEDQVLERLIEKERQE--SLKSPEEEDQQAFRLLE 451
Cdd:TIGR00618 273 RAQEAVLEETQERINRARKAAPlAAHIKAVTQIEQQAQRIH----TELQSKMRSRAKLLMKraAHVKQQSSIEEQRRLLQ 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 452 KENQEPLRFEDAEDQVLERLIEKERQESLKSPEEEDQQAFRLLEKENQEPLRFEEAEDQVLERLVEKESQESLKSPEEED 531
Cdd:TIGR00618 349 TLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAH 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 532 QRTGKPLEKENQESLRSLDENQETIVLLESKNQRPLRSLEVEEEEQ-----RIVKPLEKVSQVSLESLEkENVQSPRYLE 606
Cdd:TIGR00618 429 AKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQlqtkeQIHLQETRKKAVVLARLL-ELQEEPCPLC 507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 607 E-----DDHMIKSLLEDKTHEILGSLEDRN------GENFIPPENETQGSLRPPEEEDQRIVNHLEKESQEFLRSPEAEE 675
Cdd:TIGR00618 508 GscihpNPARQDIDNPGPLTRRMQRGEQTYaqletsEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIP 587
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 676 EEEQVMVRSL-EGENHDPLSSVVKEEQMAES-KLENESQDSRKSLEDESQETFGSLEKENLESLRSLAGQDQEEQKLEQE 753
Cdd:TIGR00618 588 NLQNITVRLQdLTEKLSEAEDMLACEQHALLrKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSI 667
|
410
....*....|..
gi 1907149237 754 TQQPLRAVEDEQ 765
Cdd:TIGR00618 668 RVLPKELLASRQ 679
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
281-795 |
7.43e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 70.94 E-value: 7.43e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 281 KSPEKEKQTPLKSLEEKNVEAE----KTLENGVLELSKPLGEEEPRMED-----QELMSPEHTLETVSFLGKENQEVVRS 351
Cdd:PTZ00121 1439 KAEEAKKADEAKKKAEEAKKAEeakkKAEEAKKADEAKKKAEEAKKADEakkkaEEAKKKADEAKKAAEAKKKADEAKKA 1518
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 352 SEEQNLESLITFKEESQYPLGGPEAEDQMLERLVEKEDQRFPRSPEEDQQAFRPLEKENQEPLRFEEAedqvleRLIEKE 431
Cdd:PTZ00121 1519 EEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEA------KKAEEA 1592
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 432 R-QESLKSPEEEDQQAFRLLEKENQEPLRFEdaedQVLERLIEKERQESLKSPEEEdqqafrllEKENQEPLRFEEAEDQ 510
Cdd:PTZ00121 1593 RiEEVMKLYEEEKKMKAEEAKKAEEAKIKAE----ELKKAEEEKKKVEQLKKKEAE--------EKKKAEELKKAEEENK 1660
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 511 VlerlvekeSQESLKSPEEEDQRTGKPLEKENQESLRSldENQETIVLLESKNQRPLRSLEVEEEEQ-RIVKPLEKVSQV 589
Cdd:PTZ00121 1661 I--------KAAEEAKKAEEDKKKAEEAKKAEEDEKKA--AEALKKEAEEAKKAEELKKKEAEEKKKaEELKKAEEENKI 1730
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 590 SLESLEKENVQSPRYLEE---DDHMIKSLLEDKTHEILGSLEDRNGENFIPPENetqgslrpPEEEDQRIVNHLEKESQE 666
Cdd:PTZ00121 1731 KAEEAKKEAEEDKKKAEEakkDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEE--------LDEEDEKRRMEVDKKIKD 1802
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 667 FLRSPEAEEEEeqvmvrsleGENHDPLSSVVKEEQMAESKLENESQDSRKSLEDESQETFGSLEKENLESLRSLAGQDQE 746
Cdd:PTZ00121 1803 IFDNFANIIEG---------GKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKE 1873
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 1907149237 747 EQKLEQETQQPLRAVEDEQMTVNPPEKVDPELPKPLRNDQEVVRSLDKE 795
Cdd:PTZ00121 1874 KDLKEDDEEEIEEADEIEKIDKDDIEREIPNNNMAGKNNDIIDDKLDKD 1922
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
195-585 |
7.38e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 64.39 E-value: 7.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 195 QEEEGQIWELVKKeaATEVKVENSLAQEIQESGLDTEEIQDSQGPLQMETLEALGDEPLMS--LKTQNHETPGKENCNSS 272
Cdd:PTZ00121 1414 AAAKKKADEAKKK--AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKAdeAKKKAEEAKKADEAKKK 1491
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 273 IEENSGTVKSPEKEKQTPLKSLEEKNVEAEKTLEngvlELSKplGEEEPRMEDQELMSPEHTLETVsflgKENQEVVRSS 352
Cdd:PTZ00121 1492 AEEAKKKADEAKKAAEAKKKADEAKKAEEAKKAD----EAKK--AEEAKKADEAKKAEEKKKADEL----KKAEELKKAE 1561
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 353 EEQNLESLITFKEESQYPLGGPEAEDQMLERLVEKEDQRFPRSPEEDQQAFRPLEKE--NQEPLRFEEAEDQVLERLIEK 430
Cdd:PTZ00121 1562 EKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAkiKAEELKKAEEEKKKVEQLKKK 1641
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 431 ERQESLKSPE---EEDQQAFRLLEKENQEPLRFEDAEDQVLERLIEKERQESLKSPEEEDQQAFRLLEKENQEPLRFEEA 507
Cdd:PTZ00121 1642 EAEEKKKAEElkkAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEEL 1721
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 508 EDQVLERlveKESQESLKSPEEEDQRTGKPLEKENQE--SLRSLDENQETIVLLESKNQRPLRSLEVEEEEQRIVKPLEK 585
Cdd:PTZ00121 1722 KKAEEEN---KIKAEEAKKEAEEDKKKAEEAKKDEEEkkKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
318-860 |
9.47e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.99 E-value: 9.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 318 EEEPRMEDQELMSPEHTLETV---SFLGKENQEVVRSSEEQNLESLITFKEESQYPLGGPEA-----EDQMLERLVEKED 389
Cdd:PTZ00121 1209 EEERKAEEARKAEDAKKAEAVkkaEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAaikaeEARKADELKKAEE 1288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 390 QRFP---RSPEEDQQAfRPLEKENQEPLRFEEAEDQVLErliEKERQESLKSPEEEDQQAFRLLEKENQ----------- 455
Cdd:PTZ00121 1289 KKKAdeaKKAEEKKKA-DEAKKKAEEAKKADEAKKKAEE---AKKKADAAKKKAEEAKKAAEAAKAEAEaaadeaeaaee 1364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 456 ----EPLRFEDAE---DQVLERLIEKERQESLKSPEEEDQQAFRLLEKENQEPLRFEEAEDQVLERLVEKESQESLKSPE 528
Cdd:PTZ00121 1365 kaeaAEKKKEEAKkkaDAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAK 1444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 529 EEDQRTGKPLEKENQESLRSLDENQETIVLLESKNQRPLRSLEVE---EEEQRIVKPLEKVSQVSLESLEKENVQSPRYL 605
Cdd:PTZ00121 1445 KADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKkkaEEAKKKADEAKKAAEAKKKADEAKKAEEAKKA 1524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 606 EE---DDHMIKSLLEDKTHEILGSLEDRNGENFIPPENETQGSLRPPEEEDQR-------IVNHLEKESQEFLRSPEAEE 675
Cdd:PTZ00121 1525 DEakkAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNmalrkaeEAKKAEEARIEEVMKLYEEE 1604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 676 EEEQVMVRSLEGENHDPLSSVVKEEQM---AESKLENESQDSRKSLEDESQETFGSLEKENLESLRSLAGQDQEEQKLEQ 752
Cdd:PTZ00121 1605 KKMKAEEAKKAEEAKIKAEELKKAEEEkkkVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAE 1684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 753 ETQQplRAVEDEQMTVNPPEKVDpELPKPLRNDQEVVRSLDKENQEslvslNEGGMETVKSSETENIESLETVGECLGRR 832
Cdd:PTZ00121 1685 EDEK--KAAEALKKEAEEAKKAE-ELKKKEAEEKKKAEELKKAEEE-----NKIKAEEAKKEAEEDKKKAEEAKKDEEEK 1756
|
570 580 590
....*....|....*....|....*....|.
gi 1907149237 833 KSV---DTQEPLWSTEVTSETIEPLEDETQE 860
Cdd:PTZ00121 1757 KKIahlKKEEEKKAEEIRKEKEAVIEEELDE 1787
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
375-613 |
1.53e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 49.74 E-value: 1.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 375 EAEDQMLERLVEKEDQRFPRSPEEDQQAFRPLEKE--NQEPLRFEEAEDQVLER--LIEKERQ---ESLKSPEEEDQQAF 447
Cdd:pfam17380 397 ELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEarQREVRRLEEERAREMERvrLEEQERQqqvERLRQQEEERKRKK 476
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 448 RLLEKENQEPLRFEDAEDQVLERLIEKERQESLkspeeEDQQAFRLLEKEnqeplrFEEAEDQVLERLVEKESQESLKSP 527
Cdd:pfam17380 477 LELEKEKRDRKRAEEQRRKILEKELEERKQAMI-----EEERKRKLLEKE------MEERQKAIYEEERRREAEEERRKQ 545
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 528 EEEDQRtgkpleKENQESLRSLDENQETIVLLEskNQRPLRSLEVEEEEQRivKPLEKVSQV-SLESLEKENVQSPRYLE 606
Cdd:pfam17380 546 QEMEER------RRIQEQMRKATEERSRLEAME--REREMMRQIVESEKAR--AEYEATTPItTIKPIYRPRISEYQPPD 615
|
....*..
gi 1907149237 607 EDDHMIK 613
Cdd:pfam17380 616 VESHMIR 622
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
415-769 |
3.04e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.81 E-value: 3.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 415 RFEEAEDQVLERLIEKERQESLKSPEEEDQQAFRLLEKEnqeplRFEDAEDQVLERLIEKERQESLKSPEEEDQQAFRll 494
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKE-----QAKKALEYYQLKEKLELEEEYLLYLDYLKLNEER-- 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 495 EKENQEPLRFEEAEDQVLERLVEKESQESLKSPEEEDQRTGKPLEKENQESLRSLDENQETIVLLESKNQRPLRSLEVEE 574
Cdd:pfam02463 239 IDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 575 EEQRIVKPLEKVSQVSLESLEKENvqsprylEEDDHMIKSLLEDKTHEILGSLEDRNGENFIPPENETQGSLRPPEEEDQ 654
Cdd:pfam02463 319 SEKEKKKAEKELKKEKEEIEELEK-------ELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAK 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 655 RIVNHLEKESQEFLRSPEAEEEEEQVMVRSLegENHDPLSSVVKEEQmaESKLENESQDSRKSLEDESQEtfgSLEKENL 734
Cdd:pfam02463 392 LKEEELELKSEEEKEAQLLLELARQLEDLLK--EEKKEELEILEEEE--ESIELKQGKLTEEKEELEKQE---LKLLKDE 464
|
330 340 350
....*....|....*....|....*....|....*
gi 1907149237 735 ESLRSLAGQDQEEQKLEQETQQPLRAVEDEQMTVN 769
Cdd:pfam02463 465 LELKKSEDLLKETQLVKLQEQLELLLSRQKLEERS 499
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
414-635 |
1.31e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.39 E-value: 1.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 414 LRFEEAEDQVLERLIEKERQESLKSPEEEDQQAF-----RLLEKENQEPLRFEDAEDQVLERLIEKER-QESLKSPEEED 487
Cdd:COG1196 281 LELEEAQAEEYELLAELARLEQDIARLEERRRELeerleELEEELAELEEELEELEEELEELEEELEEaEEELEEAEAEL 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 488 QQAFRLLEKENQEPLRFEEAEDQVLERLVEKESQES-LKSPEEEDQRTgkpLEKENQESLRSLDENQETIVLLESKNQRP 566
Cdd:COG1196 361 AEAEEALLEAEAELAEAEEELEELAEELLEALRAAAeLAAQLEELEEA---EEALLERLERLEEELEELEEALAELEEEE 437
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907149237 567 LRSLEVEEEEQRIVKPLEKVSQVSLESLEKENVQSPRYLEEDDHMIKSLLEDKTHEILGSLEDRNGENF 635
Cdd:COG1196 438 EEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGF 506
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
394-530 |
3.43e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 42.00 E-value: 3.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 394 RSPEEDQQAFRPLEKENQEPLRFEEAEDQ-VLERLIEKERQESLKSPEEEDQQAFRLLEKENQEPLRFEDAEDQVlERLI 472
Cdd:PRK12705 30 RLAKEAERILQEAQKEAEEKLEAALLEAKeLLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLE-NQLE 108
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907149237 473 EKER---QESLKSPEEEDQQAFRLLEKENQEPlrfEEAEDQVLERL---VEKESQESLKSPEEE 530
Cdd:PRK12705 109 EREKalsARELELEELEKQLDNELYRVAGLTP---EQARKLLLKLLdaeLEEEKAQRVKKIEEE 169
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
195-520 |
3.74e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.88 E-value: 3.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 195 QEEEGQIWELVKKEAATEVKVENSLAQEIQESGLDTEEIQDSQGPLQMETLEALGDEPLMSLKTQNHETPGKENCNSSIE 274
Cdd:pfam02463 672 TKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEE 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 275 ENSGTVKSPEKEKQTPLKSLEEKNvEAEKTLENGVLELSKPLGEEEPRMEDQELMSPEHTLETVSFLGKENQEVVRSSEE 354
Cdd:pfam02463 752 EEKSRLKKEEKEEEKSELSLKEKE-LAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKI 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 355 QN--LESLITFKEESQYPLGGPEAEDQMLERLVEKEDQRFPRSPEEDQQAFRPLEKENQEPLRFEEAEDQvlerLIEKER 432
Cdd:pfam02463 831 KEeeLEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKK----ELEEES 906
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 433 QESLKSPEEEDQQAFRLLEKENQEPLRFEDAEDQVLERLIEKERQESLKSPEEED----QQAFRLLEKENqEPLRFEEAE 508
Cdd:pfam02463 907 QKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERnkrlLLAKEELGKVN-LMAIEEFEE 985
|
330
....*....|....
gi 1907149237 509 DQV--LERLVEKES 520
Cdd:pfam02463 986 KEEryNKDELEKER 999
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
375-765 |
3.87e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.88 E-value: 3.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 375 EAEDQMLERLVEKEDQRFPRSP-EEDQQAFRPLEKENQEPLrfeeAEDQVLERLIEKERQE--SLKSPEEEDQQAFRLLE 451
Cdd:TIGR00618 273 RAQEAVLEETQERINRARKAAPlAAHIKAVTQIEQQAQRIH----TELQSKMRSRAKLLMKraAHVKQQSSIEEQRRLLQ 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 452 KENQEPLRFEDAEDQVLERLIEKERQESLKSPEEEDQQAFRLLEKENQEPLRFEEAEDQVLERLVEKESQESLKSPEEED 531
Cdd:TIGR00618 349 TLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAH 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 532 QRTGKPLEKENQESLRSLDENQETIVLLESKNQRPLRSLEVEEEEQ-----RIVKPLEKVSQVSLESLEkENVQSPRYLE 606
Cdd:TIGR00618 429 AKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQlqtkeQIHLQETRKKAVVLARLL-ELQEEPCPLC 507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 607 E-----DDHMIKSLLEDKTHEILGSLEDRN------GENFIPPENETQGSLRPPEEEDQRIVNHLEKESQEFLRSPEAEE 675
Cdd:TIGR00618 508 GscihpNPARQDIDNPGPLTRRMQRGEQTYaqletsEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIP 587
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 676 EEEQVMVRSL-EGENHDPLSSVVKEEQMAES-KLENESQDSRKSLEDESQETFGSLEKENLESLRSLAGQDQEEQKLEQE 753
Cdd:TIGR00618 588 NLQNITVRLQdLTEKLSEAEDMLACEQHALLrKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSI 667
|
410
....*....|..
gi 1907149237 754 TQQPLRAVEDEQ 765
Cdd:TIGR00618 668 RVLPKELLASRQ 679
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
273-586 |
4.73e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 4.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 273 IEENSGTVKSPEKEKQTPLKSLEEKNVEAEK---------TLENGVLELSKPLGEEEPRMEDQELMSPEHTLETVSF--- 340
Cdd:TIGR02169 182 VEENIERLDLIIDEKRQQLERLRREREKAERyqallkekrEYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEeis 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 341 -LGKENQEVVRSSEEQNLESLITFKEES---QYPLGGPEAEDQMLERLVEKEDQRFPRSPEEDQQAFRPLEKENQEPLRF 416
Cdd:TIGR02169 262 eLEKRLEEIEQLLEELNKKIKDLGEEEQlrvKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEEL 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 417 EEA-EDQVLERLIEKERQESLKSPEEEDQQAFRLLEKENQEPLRFEDAEDQVLERLIEK--ERQESLKSPEEEDQQAFRL 493
Cdd:TIGR02169 342 EREiEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREinELKRELDRLQEELQRLSEE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 494 LEKENQEPLRFEEAEDQVLERLveKESQESLKSPEEEDQRTGKPLEKENQESLR---SLDENQETIVLLESKNQRPLRSL 570
Cdd:TIGR02169 422 LADLNAAIAGIEAKINELEEEK--EDKALEIKKQEWKLEQLAADLSKYEQELYDlkeEYDRVEKELSKLQRELAEAEAQA 499
|
330
....*....|....*.
gi 1907149237 571 EVEEEEQRIVKPLEKV 586
Cdd:TIGR02169 500 RASEERVRGGRAVEEV 515
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
417-592 |
6.55e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.97 E-value: 6.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 417 EEAE--DQVLERLIEKERQ--ESLKSPEEEDQQAFRLLEKENQEPLRFEDAEDQVLERLiEKERQESLKSPEEEDQQA-- 490
Cdd:PRK00409 513 EDKEklNELIASLEELEREleQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEA-EKEAQQAIKEAKKEADEIik 591
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 491 -FRLLEKENQEPLRFEEAEDqVLERLVEK-ESQESLKSPEEEDQRTGKP-----LEKENQ--ESLrSLDENQETIVLLES 561
Cdd:PRK00409 592 eLRQLQKGGYASVKAHELIE-ARKRLNKAnEKKEKKKKKQKEKQEELKVgdevkYLSLGQkgEVL-SIPDDKEAIVQAGI 669
|
170 180 190
....*....|....*....|....*....|....*..
gi 1907149237 562 KNQR-PLRSLEV-----EEEEQRIVKPLEKVSQVSLE 592
Cdd:PRK00409 670 MKMKvPLSDLEKiqkpkKKKKKKPKTVKPKPRTVSLE 706
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
406-633 |
7.05e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.11 E-value: 7.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 406 LEKENQEPLRFEEAEDQVLERLIEKERQESL-------KSPEEEDQQAFRLLEKENQEPLRFEDAEDQVLERLIEKERQE 478
Cdd:pfam02463 253 IESSKQEIEKEEEKLAQVLKENKEEEKEKKLqeeelklLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKK 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 479 SLKSPEEEDQQ------AFRLLEKENQEPLRFEEAEDQVLERLVEKESQESlKSPEEEDQRTGKPLEKENQESLRSLDEN 552
Cdd:pfam02463 333 EKEEIEELEKElkeleiKREAEEEEEEELEKLQEKLEQLEEELLAKKKLES-ERLSSAAKLKEEELELKSEEEKEAQLLL 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907149237 553 QETIVLLESKNQRPLRSLEVEEEEQRIVKPLEKVSQVSLESLEKENVQSPRYLEEDDHMIKSLLEDKTHEILGSLEDRNG 632
Cdd:pfam02463 412 ELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLS 491
|
.
gi 1907149237 633 E 633
Cdd:pfam02463 492 R 492
|
|
| |
