|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
603-1088 |
3.60e-21 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 100.40 E-value: 3.60e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 603 KQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRSRIKVLETS--Y 680
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRreL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 681 QQREEQLRREKEVLSAQHASYCREAEQARAELvAQHQRQMAMAEQERDQEVARLRELQQAsILEMRKDHEHQLQRLKMLK 760
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEEL-EEAEEELEEAEAELAEAEEALLEAEAE-LAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 761 DQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEASHLTTSQQRELGIRQQDEQLRALQERLG---RQQRDMEEE 837
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAlleLLAELLEEA 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 838 RNRLQEVIGKMEVRLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRKIMVQQIAMEREELERAKSALLEEQKSVMNKCG 917
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIV 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 918 EERRRLAAEWAEYFTQQKLSKerAEREAERAMHADSQREGTIISLTKEQAELTVRACELRAKEEKLLAEREALERERQEL 997
Cdd:COG1196 553 VEDDEVAAAAIEYLKAAKAGR--ATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAA 630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 998 RLEKDRLHKASL--RLQARAQEVEHMSKVASKKYEEGEQALQEAQQMQNEQQGRLQVVQRQQEWLRQQEQRVHQEHLSLA 1075
Cdd:COG1196 631 RLEAALRRAVTLagRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELA 710
|
490
....*....|...
gi 1907081397 1076 QQRLQLDRVRQEV 1088
Cdd:COG1196 711 EAEEERLEEELEE 723
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
611-1080 |
1.26e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 82.29 E-value: 1.26e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 611 QLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRSRIKVLETSYQQREEQLRRE 690
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 691 KEVLS-AQHASYCREAEQARAELVAQHQRQMAmAEQERDQEVARLRELQQASILEMRKDHEHQLQRLKMLKDQEIDAVTS 769
Cdd:COG1196 393 RAAAElAAQLEELEEAEEALLERLERLEEELE-ELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 770 ATSHTRSLNGIIEQMEKFSSSLNTLSS-RVEASHLTTSQQRELGIRQQDEQLRALQERLGRQQRDMEEERNRLQEVIGkm 848
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEaEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQ-- 549
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 849 EVRLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRKIMVQQIAMEREELERAKSALLEEQKSVMNKCGEER---RRLAA 925
Cdd:COG1196 550 NIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTllgRTLVA 629
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 926 EWAEYFTQQKLSKERAEREAERAMHADSQREGTIISLTKEQAELTvracELRAKEEKLLAEREALERERQELRLEKDRLH 1005
Cdd:COG1196 630 ARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAAL----LEAEAELEELAERLAEEELELEEALLAEEEE 705
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907081397 1006 KASLRLQARAQEVEHMSKVASKKYEEGEQALQEAQQMQNEQQGRLQVVQRQQEWLRQQEQrvhQEHLSLAQQRLQ 1080
Cdd:COG1196 706 ERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL---ERELERLEREIE 777
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
602-1073 |
1.43e-12 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 72.11 E-value: 1.43e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 602 QKQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLL---ESLQQRHQADLELIEDAHrsRIKVLET 678
Cdd:COG4717 76 LEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLqllPLYQELEALEAELAELPE--RLEELEE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 679 SYQQREEqLRREKEVLSAQHASYCREAEQARAELVAQHQRQMAMAEQERDQEVARLRELQQASILEMRKDHEHQLQRLKM 758
Cdd:COG4717 154 RLEELRE-LEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQL 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 759 LKDQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEasHLTTSQQRELGIrqqdeqLRALQERLGRQQRDMEEER 838
Cdd:COG4717 233 ENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLIL--TIAGVLFLVLGL------LALLFLLLAREKASLGKEA 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 839 NRLQEVIGKMEVRLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRKiMVQQIAMEREELERAksALLEEQKSVMNKCG- 917
Cdd:COG4717 305 EELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQE-LLREAEELEEELQLE--ELEQEIAALLAEAGv 381
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 918 ---EERRRLAAEWAEYftqQKLskeraereaeramhadsQREGTIISLTKEQAELTVRACELRAKEEKLLAEREALERER 994
Cdd:COG4717 382 edeEELRAALEQAEEY---QEL-----------------KEELEELEEQLEELLGELEELLEALDEEELEEELEELEEEL 441
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907081397 995 QELRLEKDRLHKaslRLQARAQEVEHMSKvaSKKYEEGEQALQEAQQMQNEQQGRLQVVQRQQEWLRQQEQRVHQEHLS 1073
Cdd:COG4717 442 EELEEELEELRE---ELAELEAELEQLEE--DGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERLP 515
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
790-1088 |
2.51e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.63 E-value: 2.51e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 790 SLNTLSSRVEASHLTtsQQRELGIRQQDEQLRALQErLGRQQRDMEEERNRLQEVIGKMEVRLSEQS---RLLEQERWRV 866
Cdd:TIGR02168 669 NSSILERRREIEELE--EKIEELEEKIAELEKALAE-LRKELEELEEELEQLRKELEELSRQISALRkdlARLEAEVEQL 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 867 AAEKTKAESAQRTLEEQRKIMVQQIAMEREELERAKSALLEEQKSV---MNKCGEERRRLAAEWAEYF-TQQKLSKERAE 942
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIeqlKEELKALREALDELRAELTlLNEEAANLRER 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 943 REAERAMHADSQR-----EGTIISLTKEQAELTVRACELRAKEEKLLAEREALERERQELRLekdRLHKASLRLQARAQE 1017
Cdd:TIGR02168 826 LESLERRIAATERrledlEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEE---ALALLRSELEELSEE 902
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907081397 1018 VEHMSKVASKKYEEGEQALQEAQQMQNEQQGRLQVVQRQQEWLRQQEQRVHQEHLSLAQQR-LQLDRVRQEV 1088
Cdd:TIGR02168 903 LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIeDDEEEARRRL 974
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
603-910 |
2.78e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.63 E-value: 2.78e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 603 KQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRsRIKVletsYQQ 682
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQ-QKQI----LRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 683 REEQLRREKEVLSAQHASYCREAEQARAELvAQHQRQMAMAEQERDQEVARLRELQQAsiLEMRKDHEHQLQRlkmLKDQ 762
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEEL-AELEEKLEELKEELESLEAELEELEAE--LEELESRLEELEE---QLET 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 763 EIDAVTSATSHTRSLNGIIEQMEkfsSSLNTLSSRVEAshlTTSQQRELGIRQQDEQLRALQERLGrqqrDMEEERNRLQ 842
Cdd:TIGR02168 384 LRSKVAQLELQIASLNNEIERLE---ARLERLEDRRER---LQQEIEELLKKLEEAELKELQAELE----ELEEELEELQ 453
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907081397 843 EVIGKMEVRLSEQSRLLEQERWRVAAEKTKAESAQrtleeQRKIMVQQIAMEREELERAKSALLEEQK 910
Cdd:TIGR02168 454 EELERLEEALEELREELEEAEQALDAAERELAQLQ-----ARLDSLERLQENLEGFSEGVKALLKNQS 516
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
636-1087 |
3.23e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 71.33 E-value: 3.23e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 636 QVRKLE-LERAQHRMLLESLQQRHQADLELIEDAHRSRIKVLETSYQQREEQLRREKEVLSAQHASYCREAEQARAELVA 714
Cdd:PTZ00121 1210 EERKAEeARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEK 1289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 715 QHQRQMAMAEQERDQEVARLRELQQASILEMRKDHEHQLQRLKMLKDQEIDAVTSATSHTRslngiieQMEKFSSSLNTL 794
Cdd:PTZ00121 1290 KKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKA-------EAEAAADEAEAA 1362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 795 SSRVEASHLTTSQQRelgiRQQDEQLRALQERlgrqqRDMEEERNRLQEVIGKM-EVRLSEQSRLLEQERWRVAAEKTKA 873
Cdd:PTZ00121 1363 EEKAEAAEKKKEEAK----KKADAAKKKAEEK-----KKADEAKKKAEEDKKKAdELKKAAAAKKKADEAKKKAEEKKKA 1433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 874 ESAQRTLEEQRKI-MVQQIAMEREELERAKSALLEEQKSVMNKCGEERRRLAAEWAEYFTQQKLSKERAEREAERAMHAD 952
Cdd:PTZ00121 1434 DEAKKKAEEAKKAdEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKAD 1513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 953 SQREGTIISLTKE--QAELTVRACELRAKEEKLLAE--REALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKK 1028
Cdd:PTZ00121 1514 EAKKAEEAKKADEakKAEEAKKADEAKKAEEKKKADelKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEAR 1593
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907081397 1029 YEEGEQALQEAQQMQNEQQGRLQVVQRQQEWLRQQEQ---RVHQEHLSLAQQRLQLDRVRQE 1087
Cdd:PTZ00121 1594 IEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEekkKVEQLKKKEAEEKKKAEELKKA 1655
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
630-909 |
5.53e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.47 E-value: 5.53e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 630 LSELEAQVRKL---------------ELERAQHRMLLESLQQRHQ---------ADLELIEDAHRSRIKVLETSYQQ-RE 684
Cdd:TIGR02168 195 LNELERQLKSLerqaekaerykelkaELRELELALLVLRLEELREeleelqeelKEAEEELEELTAELQELEEKLEElRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 685 EQLRREKEVLSAQHASYCREAEQARAELVAQHQrqmamaeQERDQEVARLRELQQASILEMRKDHEHQLQRLKMLKDQEi 764
Cdd:TIGR02168 275 EVSELEEEIEELQKELYALANEISRLEQQKQIL-------RERLANLERQLEELEAQLEELESKLDELAEELAELEEKL- 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 765 davtsaTSHTRSLNGIIEQMEKFSSSLNTLSSRVEAS--HLTTSQQRELGIRQQDEQLRALQERLGRQQRDMEEERNRLQ 842
Cdd:TIGR02168 347 ------EELKEELESLEAELEELEAELEELESRLEELeeQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQ 420
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907081397 843 EVIGKMEVRLSEQSRLLEQERW-RVAAEKTKAESAQRTLEEQRKIMVQQIAMEREELERAKSALLEEQ 909
Cdd:TIGR02168 421 QEIEELLKKLEEAELKELQAELeELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQ 488
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
636-1086 |
1.74e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 69.01 E-value: 1.74e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 636 QVRKLELERAQHRMLLESLQQRHQaDLELIEDAHRSR--IKVLETSYQQREEQLRREKEVLSAQHASYCREAEQARAELV 713
Cdd:PTZ00121 1102 EAKKTETGKAEEARKAEEAKKKAE-DARKAEEARKAEdaRKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEA 1180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 714 AQHQRQMAMAEQERDQEVARLREL-----QQASILEMRK-DHEHQLQRLKMLKDQEIDAVTSATSHTRSLNgiiEQMEKF 787
Cdd:PTZ00121 1181 ARKAEEVRKAEELRKAEDARKAEAarkaeEERKAEEARKaEDAKKAEAVKKAEEAKKDAEEAKKAEEERNN---EEIRKF 1257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 788 SSSLNTLSSRVEASHLTTSQQRELGIRQQDEQLRALQERLGRQQRDMEEERNRlqevigkmevrlSEQSRLLEQERWRVA 867
Cdd:PTZ00121 1258 EEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKK------------AEEAKKADEAKKKAE 1325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 868 AEKTKAESAQRTLEEQRKimVQQIAMEREELERAKSALLEEQKSVMNKCGEERRRLAAEWAEYFTQQKLSKERAEREAER 947
Cdd:PTZ00121 1326 EAKKKADAAKKKAEEAKK--AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED 1403
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 948 AMHAD----SQREGTIISLTKEQAELTVRACELRAK-EEKLLAE---REALERERQELRLEKDRLHKASLRLQARAQE-- 1017
Cdd:PTZ00121 1404 KKKADelkkAAAAKKKADEAKKKAEEKKKADEAKKKaEEAKKADeakKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEak 1483
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 1018 -VEHMSKVASKKYEEGEQALQEAQQMQNEQQGRLQVVQRQQEWLRQQEQRVHQEHLSLAQQRLQLDRVRQ 1086
Cdd:PTZ00121 1484 kADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKK 1553
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
642-1088 |
2.38e-11 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 67.87 E-value: 2.38e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 642 LERAQHRMLLESLQQRhqadlelIEDAHRSRIKVLETSYQQREEqLRREKEVLSAQHASYcREAEQARAELVAQHQRQMA 721
Cdd:COG4717 39 LLAFIRAMLLERLEKE-------ADELFKPQGRKPELNLKELKE-LEEELKEAEEKEEEY-AELQEELEELEEELEELEA 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 722 mAEQERDQEVARLRELQQAsilemrKDHEHQLQRLKMLKDQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEAS 801
Cdd:COG4717 110 -ELEELREELEKLEKLLQL------LPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEEL 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 802 HLTTSQQRELGIRQQDEQLRALQERLGRQQRDMEEERNRLQEVIGKMEVRLSEQSRLLEQERWR--------------VA 867
Cdd:COG4717 183 LEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKearlllliaaallaLL 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 868 AEKTKAESAQRTLEEQRKIMVQQIAMEREELERAKSALLEEQKSVMNKCGEERRRlAAEWAEYFTQQKLSKERAEREAER 947
Cdd:COG4717 263 GLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELE-EEELEELLAALGLPPDLSPEELLE 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 948 AMHADSQREGTIISLTKEQAELTVRACELR---------AKEEKLLAEREALERERQELRlekDRLHKASLRLQARAQEV 1018
Cdd:COG4717 342 LLDRIEELQELLREAEELEEELQLEELEQEiaallaeagVEDEEELRAALEQAEEYQELK---EELEELEEQLEELLGEL 418
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 1019 EHMSKVASKkyEEGEQALQEAQQMQNEQQGRLQVVQRQQEWLRQQEQRVHQEHlSLAQQRLQLDRVRQEV 1088
Cdd:COG4717 419 EELLEALDE--EELEEELEELEEELEELEEELEELREELAELEAELEQLEEDG-ELAELLQELEELKAEL 485
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
607-1087 |
3.53e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 68.24 E-value: 3.53e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 607 AAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRmlLESLQQRHQADLELIEDAHR---------SRIKVLE 677
Cdd:PTZ00121 1317 ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADE--AEAAEEKAEAAEKKKEEAKKkadaakkkaEEKKKAD 1394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 678 TSYQQREEQLRREKEVLSAQHASYCREAEQARAELVAQHQRQMAMAEQERDQEVARLRELQQASILEMRKDHEHQlqrlk 757
Cdd:PTZ00121 1395 EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEA----- 1469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 758 mlkdQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEAshlttsqqrelgiRQQDEQLRALQERLGRQQRDMEEE 837
Cdd:PTZ00121 1470 ----KKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEA-------------KKKADEAKKAEEAKKADEAKKAEE 1532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 838 RNRLQEVIGKMEVRLSEQSRllEQERWRVAAEKTKAESAQRtlEEQRKIMVQQIAmerEELERAKSALLEEqksvMNKCG 917
Cdd:PTZ00121 1533 AKKADEAKKAEEKKKADELK--KAEELKKAEEKKKAEEAKK--AEEDKNMALRKA---EEAKKAEEARIEE----VMKLY 1601
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 918 EERRRLAAEwaeyftqqKLSKERAEREAERAMHADSQREGTIISLTKEQAELTVRACELRAKEEKLLAEREAL------- 990
Cdd:PTZ00121 1602 EEEKKMKAE--------EAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEakkaeed 1673
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 991 ERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQAlQEAQQMQNEQQGRLQVVQRQQEWLRQ--QEQRVH 1068
Cdd:PTZ00121 1674 KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKA-EELKKAEEENKIKAEEAKKEAEEDKKkaEEAKKD 1752
|
490
....*....|....*....
gi 1907081397 1069 QEHLSLAQQRLQLDRVRQE 1087
Cdd:PTZ00121 1753 EEEKKKIAHLKKEEEKKAE 1771
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
659-1058 |
4.41e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.39 E-value: 4.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 659 QADLELIEDAHRSRIKVLETSYQQRE--EQLRREKEVL-SAQHASYCREAEQARAELvAQHQRQMAMAEQERDQEVARLR 735
Cdd:TIGR02168 185 RENLDRLEDILNELERQLKSLERQAEkaERYKELKAELrELELALLVLRLEELREEL-EELQEELKEAEEELEELTAELQ 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 736 ELQQAsiLEmrkdhEHQLQRLKMlkDQEIDAVTSAtshtrslngiieqmekfsssLNTLSSRVEashltTSQQRELGIRQ 815
Cdd:TIGR02168 264 ELEEK--LE-----ELRLEVSEL--EEEIEELQKE--------------------LYALANEIS-----RLEQQKQILRE 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 816 QDEQLRALQERLGRQQRDMEEERNRLQEVIGKMEVRLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRKimvqqiamER 895
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE--------QL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 896 EELERAKSALLEEQKSVMNkcgeERRRLAAEwaeyftqqklskeraereaeramhadsqregtiisltKEQAELTVRace 975
Cdd:TIGR02168 382 ETLRSKVAQLELQIASLNN----EIERLEAR-------------------------------------LERLEDRRE--- 417
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 976 lRAKEEKLLAEREALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEAQQMQNEQQGRLQVVQR 1055
Cdd:TIGR02168 418 -RLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER 496
|
...
gi 1907081397 1056 QQE 1058
Cdd:TIGR02168 497 LQE 499
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
623-1004 |
6.24e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.00 E-value: 6.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 623 LLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAhrsrikvletsyQQREEQLRREKEVLSAQHASYC 702
Cdd:TIGR02168 672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQL------------RKELEELSRQISALRKDLARLE 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 703 REAEQArAELVAQHQRQMAMAEQERDQEVARLRELQQAsilemRKDHEHQLQRLKmlkdqeidavtsatshtrslngiiE 782
Cdd:TIGR02168 740 AEVEQL-EERIAQLSKELTELEAEIEELEERLEEAEEE-----LAEAEAEIEELE------------------------A 789
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 783 QMEKFSSSLNTLSSRVEASHlttsqqrelgirqqdEQLRALQERLGRQQRDMEEERNRLQEvIGKMEVRLSEQSRLLEQE 862
Cdd:TIGR02168 790 QIEQLKEELKALREALDELR---------------AELTLLNEEAANLRERLESLERRIAA-TERRLEDLEEQIEELSED 853
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 863 RWRVAAEKTKAESAQRTLEEQRKIMVQQIAMEREELERAKSALlEEQKSVMNKCGEERRRLAAEWAEyfTQQKLSKERAE 942
Cdd:TIGR02168 854 IESLAAEIEELEELIEELESELEALLNERASLEEALALLRSEL-EELSEELRELESKRSELRRELEE--LREKLAQLELR 930
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907081397 943 REAERamhadsQREGTIISLTKEQAELTVRacELRAKEEKLLAEREALERERQELRLEKDRL 1004
Cdd:TIGR02168 931 LEGLE------VRIDNLQERLSEEYSLTLE--EAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
593-1087 |
1.40e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.85 E-value: 1.40e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 593 QSLLPGSGYQKQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQ------ADLELIE 666
Cdd:TIGR02168 316 RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLEtlrskvAQLELQI 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 667 DAHRSRIKVLETSYQQREEQLRREKEVLSAQHASYCREAEQARAELVAQHQRQMAMAEQERDQEVARLRELQQAS----- 741
Cdd:TIGR02168 396 ASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELeeaeq 475
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 742 -ILEMRKDHEHQLQRLKMLKDQE------IDAVTSATSHTRSLNGI-------IEQMEKFSSSLNT-LSSRVEA------ 800
Cdd:TIGR02168 476 aLDAAERELAQLQARLDSLERLQenlegfSEGVKALLKNQSGLSGIlgvlselISVDEGYEAAIEAaLGGRLQAvvvenl 555
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 801 ------------------SHLTTSQQRELGIRQQDEQLRALQERLGRQQRDMEEERNRLQEVIGKMEVRLS--------- 853
Cdd:TIGR02168 556 naakkaiaflkqnelgrvTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLvvddldnal 635
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 854 EQSRLLEQE-------------RWRVAAEKTKAESAQ-------RTLEEQRKIMVQQIAMEREELERAKSALLEeqksvM 913
Cdd:TIGR02168 636 ELAKKLRPGyrivtldgdlvrpGGVITGGSAKTNSSIlerrreiEELEEKIEELEEKIAELEKALAELRKELEE-----L 710
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 914 NKCGEERRRLAAEWAEYFTQQKLSKERAEREAERAMHADSQREGTIISLTKEQAELTVRACELRAKEEKLLAEREALE-- 991
Cdd:TIGR02168 711 EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEaq 790
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 992 -----RERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEAQQMQNEQQGRLQVVQRQQEWLRQQEQR 1066
Cdd:TIGR02168 791 ieqlkEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEE 870
|
570 580
....*....|....*....|.
gi 1907081397 1067 VHQEHLSLAQQRLQLDRVRQE 1087
Cdd:TIGR02168 871 LESELEALLNERASLEEALAL 891
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
602-1050 |
1.96e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.46 E-value: 1.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 602 QKQLLAAQGQLQSSTAQLQvellQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRSRIKVLETSYQ 681
Cdd:TIGR02168 350 KEELESLEAELEELEAELE----ELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEE 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 682 QREEQLRREKEVLSAQHASYCREAEQARAEL------VAQHQRQMAMAEQERDQEVARLRELQQ--ASILEMRKDHE--- 750
Cdd:TIGR02168 426 LLKKLEEAELKELQAELEELEEELEELQEELerleeaLEELREELEEAEQALDAAERELAQLQArlDSLERLQENLEgfs 505
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 751 --------HQLQR-----------------------------------------------------------LKMLKDQE 763
Cdd:TIGR02168 506 egvkallkNQSGLsgilgvlselisvdegyeaaieaalggrlqavvvenlnaakkaiaflkqnelgrvtflpLDSIKGTE 585
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 764 IDA-----VTSATSHTRSLNGIIEQMEKFSSSLNTLSSRV---------------------------------------- 798
Cdd:TIGR02168 586 IQGndreiLKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVlvvddldnalelakklrpgyrivtldgdlvrpggvitggs 665
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 799 -EASHLTTSQQRELG-----IRQQDEQLRALQ---ERLGRQQRDMEEERNRLQEVIGKMEVRLSEQS---RLLEQERWRV 866
Cdd:TIGR02168 666 aKTNSSILERRREIEeleekIEELEEKIAELEkalAELRKELEELEEELEQLRKELEELSRQISALRkdlARLEAEVEQL 745
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 867 AAEKTKAESAQRTLEEQRKIMVQQIAMEREELERAKSALLEEQKSV---MNKCGEERRRLAAEWAEYF-TQQKLSKERAE 942
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIeqlKEELKALREALDELRAELTlLNEEAANLRER 825
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 943 REAERAMHADSQRE------------GTIISLTKEQAELTVRACELRAKEEKLLAEREALERERQELRLEKDRLHKASLR 1010
Cdd:TIGR02168 826 LESLERRIAATERRledleeqieelsEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRE 905
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 1907081397 1011 LQARAQEVEHMSKVASKKYEEGEQALQEAQQMQNEQQGRL 1050
Cdd:TIGR02168 906 LESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
603-935 |
3.55e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.69 E-value: 3.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 603 KQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLEL--ERAQHRM------LLESLQQRHQADLELIE-----DAH 669
Cdd:TIGR02168 701 AELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAevEQLEERIaqlskeLTELEAEIEELEERLEEaeeelAEA 780
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 670 RSRIKVLETSYQQREEQLRREKEVLSAQHASYCREAEQAR--AELVAQHQRQMAMAEQERDQEVARLRELqQASILEMRK 747
Cdd:TIGR02168 781 EAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAAnlRERLESLERRIAATERRLEDLEEQIEEL-SEDIESLAA 859
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 748 DHEHQLQRLKMLKDQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVeashlttsqqrelgiRQQDEQLRALQERL 827
Cdd:TIGR02168 860 EIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR---------------SELRRELEELREKL 924
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 828 GRQQRDMEEERNRLQEVIGkmevRLSEQSRLLEQErwrVAAEKTKAESAQRTLEEQrkimVQQIAMEREELERAKSALLE 907
Cdd:TIGR02168 925 AQLELRLEGLEVRIDNLQE----RLSEEYSLTLEE---AEALENKIEDDEEEARRR----LKRLENKIKELGPVNLAAIE 993
|
330 340
....*....|....*....|....*...
gi 1907081397 908 EQKSVmnkcgEERRrlaaewaEYFTQQK 935
Cdd:TIGR02168 994 EYEEL-----KERY-------DFLTAQK 1009
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
602-991 |
1.23e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.65 E-value: 1.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 602 QKQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRSRIKVLETSYQ 681
Cdd:COG1196 374 LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 682 QREEQLRREKEVLSAQHasycREAEQARAELVAQHQRQMAMAEQERDQEVARLRELQQASILEMRK----DHEHQLQRLK 757
Cdd:COG1196 454 LEEEEEALLELLAELLE----EAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLlaglRGLAGAVAVL 529
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 758 MLKDQEIDAVTSATSHTRSLNGIIEQMEKFSS----------------SLNTLSSRVEASHLTTSQQRELGIRQQDEQLR 821
Cdd:COG1196 530 IGVEAAYEAALEAALAAALQNIVVEDDEVAAAaieylkaakagratflPLDKIRARAALAAALARGAIGAAVDLVASDLR 609
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 822 ALQERLGRQQRDMEEER--NRLQEVIGKMEVRLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRKIMVQQIAMEREELE 899
Cdd:COG1196 610 EADARYYVLGDTLLGRTlvAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLA 689
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 900 RAKSALLEEQKSVMNKCGEERRRLAAEWAEYFTQQKLSKERAEREAERAMHADSQREGTIISLTKEQAELTVRAcELRAK 979
Cdd:COG1196 690 EEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE-ELERE 768
|
410
....*....|..
gi 1907081397 980 EEKLLAEREALE 991
Cdd:COG1196 769 LERLEREIEALG 780
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
607-1056 |
1.51e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 62.85 E-value: 1.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 607 AAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRM--LLESLQQRHQADlELIEDAHRSR-----IKVLETS 679
Cdd:PTZ00121 1338 AEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKAdaAKKKAEEKKKAD-EAKKKAEEDKkkadeLKKAAAA 1416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 680 YQQREEQLRREKEVLSAQH----ASYCREAEQAR--AELVAQHQRQMAMAEQERDQEVARLRELQQASILEMRKDHEHQL 753
Cdd:PTZ00121 1417 KKKADEAKKKAEEKKKADEakkkAEEAKKADEAKkkAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAK 1496
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 754 QRLKMLKDQEiDAVTSATSHTRSlngiiEQMEKfSSSLNTLSSRVEASHLTTSQQRELG--IRQQDEQLRALQERLGRQQ 831
Cdd:PTZ00121 1497 KKADEAKKAA-EAKKKADEAKKA-----EEAKK-ADEAKKAEEAKKADEAKKAEEKKKAdeLKKAEELKKAEEKKKAEEA 1569
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 832 RDMEEERN---RLQEVIGKME-VRLSEQSRLLEQERWRVAAEKTKAESAQ------RTLEEQRKIMVQQIAMEREELERA 901
Cdd:PTZ00121 1570 KKAEEDKNmalRKAEEAKKAEeARIEEVMKLYEEEKKMKAEEAKKAEEAKikaeelKKAEEEKKKVEQLKKKEAEEKKKA 1649
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 902 KSALLEEQKSVMNKcGEERRRLAAEWAEYFTQQKLSKERAEREAERAMHADSQREGTiiSLTKEQAELTVRACELRAKEE 981
Cdd:PTZ00121 1650 EELKKAEEENKIKA-AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAE--ELKKKEAEEKKKAEELKKAEE 1726
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907081397 982 KLLAEREALERERQELRLEKDRLHKAslrlQARAQEVEHMSKVASKKYEEGEQALQEA--QQMQNEQQGRLQVVQRQ 1056
Cdd:PTZ00121 1727 ENKIKAEEAKKEAEEDKKKAEEAKKD----EEEKKKIAHLKKEEEKKAEEIRKEKEAVieEELDEEDEKRRMEVDKK 1799
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
634-1086 |
1.60e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 62.47 E-value: 1.60e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 634 EAQVRKLELERAQHRML-LESLQQRHQADLELIEDAHRSRI--KVLETSYQQREEQLRREKEVLSAQHASycREAEQAR- 709
Cdd:PTZ00121 1239 AEEAKKAEEERNNEEIRkFEEARMAHFARRQAAIKAEEARKadELKKAEEKKKADEAKKAEEKKKADEAK--KKAEEAKk 1316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 710 ---AELVAQHQRQMAMA------EQERDQEVARLRELQQASILEMRKDHEHQLQRLKMLKDQEIDAVTSATSHTRSLNGI 780
Cdd:PTZ00121 1317 adeAKKKAEEAKKKADAakkkaeEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA 1396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 781 IEQMEKFSSSLNTLSSRVEASHLTTSQQRELGIRQQDEQLR--ALQERLGRQQRDMEEERNRLQEVIGKME--------V 850
Cdd:PTZ00121 1397 KKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKkkAEEAKKADEAKKKAEEAKKAEEAKKKAEeakkadeaK 1476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 851 RLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRKIMVQQIAMEREELERAKSALlEEQKSVMNKCGEERR-----RLAA 925
Cdd:PTZ00121 1477 KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAE-EAKKADEAKKAEEKKkadelKKAE 1555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 926 EW--------AEYFTQQKLSKERAEREAERAMHADSQREGTIISLTKE----QAELTVRACELRAKEEKLLAEREALERE 993
Cdd:PTZ00121 1556 ELkkaeekkkAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEekkmKAEEAKKAEEAKIKAEELKKAEEEKKKV 1635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 994 RQELRLEKDRLHKASlrlQARAQEVEHMSKVA--SKKYEEGEQALQEAQQMQNEQQGRLQVVQRQQEWLRQQEQ--RVHQ 1069
Cdd:PTZ00121 1636 EQLKKKEAEEKKKAE---ELKKAEEENKIKAAeeAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEElkKKEA 1712
|
490
....*....|....*..
gi 1907081397 1070 EHLSLAQQRLQLDRVRQ 1086
Cdd:PTZ00121 1713 EEKKKAEELKKAEEENK 1729
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
808-1104 |
2.99e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.62 E-value: 2.99e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 808 QRELGIRQQDEQLRALQErLGRQQRDMEEERNRLQEVIGKMEVRLSEQSRLLEQ--ERWRVAAEKTKAESAQRTLEEQRK 885
Cdd:TIGR02169 217 LKEKREYEGYELLKEKEA-LERQKEAIERQLASLEEELEKLTEEISELEKRLEEieQLLEELNKKIKDLGEEEQLRVKEK 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 886 ImvQQIAMEREELERAKSALLEEQKSVMN---KCGEERRRLAAEWAEYFTQQklskERAEREAERAMHADSQREGTIISL 962
Cdd:TIGR02169 296 I--GELEAEIASLERSIAEKERELEDAEErlaKLEAEIDKLLAEIEELEREI----EEERKRRDKLTEEYAELKEELEDL 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 963 TKEQAELTVRACELRAKEEKLLAEREALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEAQQM 1042
Cdd:TIGR02169 370 RAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALE 449
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907081397 1043 QNEQQGRLQVVQRQQEWLRQQEQRVHQEHLSLAQQRLQLDRVRQEVPASLPGLPPRVQGPAA 1104
Cdd:TIGR02169 450 IKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRA 511
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
705-908 |
3.00e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 61.47 E-value: 3.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 705 AEQARAELvaqhQRQMAMAEQERDQEVARLRELQQAsiLEMRKDHEHQLQRLKMLKDQEIDaVTSATSHTRSLNGIIEQM 784
Cdd:COG4913 608 NRAKLAAL----EAELAELEEELAEAEERLEALEAE--LDALQERREALQRLAEYSWDEID-VASAEREIAELEAELERL 680
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 785 EKFSSSLNTLSSRVEAShlttsQQRELGIRQQDEQLRALQERLGRQQRDMEEERNRLQEVIGKMEVRLSEQSRLLEQERW 864
Cdd:COG4913 681 DASSDDLAALEEQLEEL-----EAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERF 755
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1907081397 865 RVAAEKTKAESAQRTLEEQRKIMVQQIAMEREELERAKSALLEE 908
Cdd:COG4913 756 AAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
603-1078 |
3.69e-09 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 61.14 E-value: 3.69e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 603 KQLLAAQGQLQSSTAQLQVEL------LQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRSRI-KV 675
Cdd:TIGR00618 229 KHLREALQQTQQSHAYLTQKReaqeeqLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIeQQ 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 676 LETSYQQREEQLR-REKEVLSAQHASYCREAEQARAELVAQHQRQMAMAEQERDQEVARLRELQQASILEmrkDHEHQLQ 754
Cdd:TIGR00618 309 AQRIHTELQSKMRsRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLT---QHIHTLQ 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 755 RLKMLKDQEIDAVTSATShtrslngiIEQMEKFSSSLNTLSSRVEASHLTTSQQRELGIRQQDEQLRALQERLGRQQRDM 834
Cdd:TIGR00618 386 QQKTTLTQKLQSLCKELD--------ILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 835 EEERNRLQEVIGKMEVRLSEQSRLLEQErwrvaaEKTKAESAQRTLEEQRkimvqqiamEREELERAKSALLEEQKSVMN 914
Cdd:TIGR00618 458 KIHLQESAQSLKEREQQLQTKEQIHLQE------TRKKAVVLARLLELQE---------EPCPLCGSCIHPNPARQDIDN 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 915 KCGEERRRLAAEWAEYFTQQKLSKEraereaeramhadsqrEGTIISLTKeqaeltvRACELRAKEEKLLAEREALERER 994
Cdd:TIGR00618 523 PGPLTRRMQRGEQTYAQLETSEEDV----------------YHQLTSERK-------QRASLKEQMQEIQQSFSILTQCD 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 995 QELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEAqqmQNEQQGRLQVVQRQQEwLRQQEQRVHQEHLSL 1074
Cdd:TIGR00618 580 NRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPE---QDLQDVRLHLQQCSQE-LALKLTALHALQLTL 655
|
....
gi 1907081397 1075 AQQR 1078
Cdd:TIGR00618 656 TQER 659
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
612-991 |
4.31e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.85 E-value: 4.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 612 LQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRhqadlelIEDAHRSrIKVLETSYQQREEQLRREK 691
Cdd:TIGR02169 665 GILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQE-------LSDASRK-IGEIEKEIEQLEQEEEKLK 736
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 692 EVLsAQHASYCREAEQARAElvaqhqrqmamAEQERDQEVARLRELQqASILEMRKDHEHQLQRLKMLKDQEIDAvtsat 771
Cdd:TIGR02169 737 ERL-EELEEDLSSLEQEIEN-----------VKSELKELEARIEELE-EDLHKLEEALNDLEARLSHSRIPEIQA----- 798
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 772 shtrSLNGIIEQMEKFSSSLNTLSSRVEASHLTTSQQRELgIRQQDEQLRALQER---LGRQQRDMEEERNRLQEVIGKM 848
Cdd:TIGR02169 799 ----ELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKE-IQELQEQRIDLKEQiksIEKEIENLNGKKEELEEELEEL 873
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 849 EVRLSE-QSRL--LEQERWRVAAEKTKAESAQRTLEEQRKIMVQQIamerEELERAKSALLEEQKSVmnkcGEERRRLAA 925
Cdd:TIGR02169 874 EAALRDlESRLgdLKKERDELEAQLRELERKIEELEAQIEKKRKRL----SELKAKLEALEEELSEI----EDPKGEDEE 945
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907081397 926 EWAEYFTQQKLSKERAEreaeraMHADSQREGTIISLTKEQAELTV-RACELRAKEEKLLAEREALE 991
Cdd:TIGR02169 946 IPEEELSLEDVQAELQR------VEEEIRALEPVNMLAIQEYEEVLkRLDELKEKRAKLEEERKAIL 1006
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
603-848 |
4.82e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.84 E-value: 4.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 603 KQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRSRIKVLET---- 678
Cdd:TIGR02168 778 AEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDiesl 857
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 679 -----SYQQREEQLRREKEVLSAQHASYCREAEQARAELVAQhQRQMAMAEQERDQEVARLRELQqasilEMRKDHEHQL 753
Cdd:TIGR02168 858 aaeieELEELIEELESELEALLNERASLEEALALLRSELEEL-SEELRELESKRSELRRELEELR-----EKLAQLELRL 931
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 754 QRLKMLKDQEIDAVTSatSHTRSLNGIIEQMEKFSSSLNTLSSRVeasHLTTSQQRELG------IrqqdEQLRALQER- 826
Cdd:TIGR02168 932 EGLEVRIDNLQERLSE--EYSLTLEEAEALENKIEDDEEEARRRL---KRLENKIKELGpvnlaaI----EEYEELKERy 1002
|
250 260
....*....|....*....|....
gi 1907081397 827 --LGRQQRDMEEERNRLQEVIGKM 848
Cdd:TIGR02168 1003 dfLTAQKEDLTEAKETLEEAIEEI 1026
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
619-1031 |
9.38e-09 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 59.14 E-value: 9.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 619 LQVELLQSQTKLSEL----EAQVRKLELERAQHRMLLESLQQRHQA----DLELIEDAHRSRIKVLETSYQQREEQ---- 686
Cdd:pfam07888 32 LQNRLEECLQERAELlqaqEAANRQREKEKERYKRDREQWERQRRElesrVAELKEELRQSREKHEELEEKYKELSasse 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 687 -LRREKEVLSAQhasycREAEQARAELVAQHQRQMAMAEQERDQEVARLRElQQASILEMRKDHEHQLQRLKMLKDQEID 765
Cdd:pfam07888 112 eLSEEKDALLAQ-----RAAHEARIRELEEDIKTLTQRVLERETELERMKE-RAKKAGAQRKEEEAERKQLQAKLQQTEE 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 766 AVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEAShLTTSQQRELGIRQQDEQLRALQERLGRQQRDMEEERNRLQEVI 845
Cdd:pfam07888 186 ELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQK-LTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSMA 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 846 GKMEVRLSE--QSRL-LEQERWRVAAEKTKAESAQRTLEEQRKIMVQQIAMEREELERAKSALLEEQKSVMnkcgEERrr 922
Cdd:pfam07888 265 AQRDRTQAElhQARLqAAQLTLQLADASLALREGRARWAQERETLQQSAEADKDRIEKLSAELQRLEERLQ----EER-- 338
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 923 laaewaeyftqqklskeraereaeramhadSQREGTIISLTKEQAELTVRACELRAKEEKLLAEREALERERQELRLEKD 1002
Cdd:pfam07888 339 ------------------------------MEREKLEVELGREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQ 388
|
410 420
....*....|....*....|....*....
gi 1907081397 1003 RLHKASLRLQARaqevehMSKVASKKYEE 1031
Cdd:pfam07888 389 ELLEYIRQLEQR------LETVADAKWSE 411
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
677-1072 |
1.11e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.77 E-value: 1.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 677 ETSYQQREEQLRREKEVLSAQHASYCREAEQARAELVAQHQRQMAMAEQERDQEVAR----LRELQQASILEMRKDHEHQ 752
Cdd:PTZ00121 1078 DFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARkaedARKAEEARKAEDAKRVEIA 1157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 753 lQRLKMLKDQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEASHLTTSQQRELGIRQQDEQLRALQERLGRQQR 832
Cdd:PTZ00121 1158 -RKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAK 1236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 833 DMEEERNRLQEVIGKMEVRLSEQSRLLEQERWRV---AAEKTKAESAQRTlEEQRKIMVQQIAMEREELERAKSALLEEQ 909
Cdd:PTZ00121 1237 KDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAaikAEEARKADELKKA-EEKKKADEAKKAEEKKKADEAKKKAEEAK 1315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 910 KSvmnkcgEERRRLAAEWAEYFTQQKlSKERAEREAERAMHADSQREGTIISLTKEQAEltvrACELRAKEEKLLAerEA 989
Cdd:PTZ00121 1316 KA------DEAKKKAEEAKKKADAAK-KKAEEAKKAAEAAKAEAEAAADEAEAAEEKAE----AAEKKKEEAKKKA--DA 1382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 990 LERERQELRlEKDRLHKASLRLQARAQEVEHmSKVASKKYEEGEQALQEAQQMQnEQQGRLQVVQRQQEWLRQQEQRVHQ 1069
Cdd:PTZ00121 1383 AKKKAEEKK-KADEAKKKAEEDKKKADELKK-AAAAKKKADEAKKKAEEKKKAD-EAKKKAEEAKKADEAKKKAEEAKKA 1459
|
...
gi 1907081397 1070 EHL 1072
Cdd:PTZ00121 1460 EEA 1462
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
603-1089 |
1.28e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 59.60 E-value: 1.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 603 KQLLAAQGQLQSSTAQLQVELL-------QSQTKLSELEAQVRKLELERAQHRMLLESLQQ----------RHQADLELI 665
Cdd:TIGR00618 187 AKKKSLHGKAELLTLRSQLLTLctpcmpdTYHERKQVLEKELKHLREALQQTQQSHAYLTQkreaqeeqlkKQQLLKQLR 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 666 EDAHRSRIKVLETSYQQREEQLRREKEVLsAQHASYCREAEQARAELVAQHQRQMAMAEQERDQevaRLRELQQASILEM 745
Cdd:TIGR00618 267 ARIEELRAQEAVLEETQERINRARKAAPL-AAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMK---RAAHVKQQSSIEE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 746 RKDHEHQLQRLKMLKDQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEASHLTTSQQRELGIRQ--QDEQLRAL 823
Cdd:TIGR00618 343 QRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIdtRTSAFRDL 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 824 QERL--GRQQRDMEEERNRLQEVIGKMEVRLSEQSRLLEQErwrvAAEKTKAESAQrtlEEQRKIMVQQIAMEREELERA 901
Cdd:TIGR00618 423 QGQLahAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQE----SAQSLKEREQQ---LQTKEQIHLQETRKKAVVLAR 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 902 KSALLEEQKSVMNKCGEERRRLAAEWAEYFTQQKLSKERAEREAERAMHADSQREGTiiSLTKEQAELTVRACELRAKEE 981
Cdd:TIGR00618 496 LLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLT--SERKQRASLKEQMQEIQQSFS 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 982 KLLAEREALERERQELRLEKDRLHK---ASLRLQARAQEVEHMSKVASKKYEEGEQALQEAQQMQNEQQGRLQVVQRQQE 1058
Cdd:TIGR00618 574 ILTQCDNRSKEDIPNLQNITVRLQDlteKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQL 653
|
490 500 510
....*....|....*....|....*....|.
gi 1907081397 1059 WLRQQEQRVHQehLSLAQQRLQLDRVRQEVP 1089
Cdd:TIGR00618 654 TLTQERVREHA--LSIRVLPKELLASRQLAL 682
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
607-1117 |
2.28e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 58.59 E-value: 2.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 607 AAQGQLQSSTAQLQVELLQSQTK---------LSELEAQVRKLELE-RAQHRMLLESLQQRHQ----ADLELIE-----D 667
Cdd:pfam15921 287 ASSARSQANSIQSQLEIIQEQARnqnsmymrqLSDLESTVSQLRSElREAKRMYEDKIEELEKqlvlANSELTEarterD 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 668 AHRSRIKVLETSYQQREEQL-RREKEV-LSAQHASYCREAEQARAELVAQHQRQMamaeQERDQEVARLRELQQASILEM 745
Cdd:pfam15921 367 QFSQESGNLDDQLQKLLADLhKREKELsLEKEQNKRLWDRDTGNSITIDHLRREL----DDRNMEVQRLEALLKAMKSEC 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 746 RKDHEHQLQRLKMlKDQEIDAVTSATSHTRSLNGIIEQ-MEKFSSSLNTL-SSRVEASHLTTS-QQRELGIRQQDEQLRA 822
Cdd:pfam15921 443 QGQMERQMAAIQG-KNESLEKVSSLTAQLESTKEMLRKvVEELTAKKMTLeSSERTVSDLTASlQEKERAIEATNAEITK 521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 823 LQERLGRQQRDMEEERNR------LQEVIGKMEVRLSEQSRLLEQERWRV------------AAEKTKAESAQ------- 877
Cdd:pfam15921 522 LRSRVDLKLQELQHLKNEgdhlrnVQTECEALKLQMAEKDKVIEILRQQIenmtqlvgqhgrTAGAMQVEKAQlekeind 601
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 878 RTLEEQR-KIMVQQIAMEREELErAKSALLEEQKSVMNKCGEERRRLAAEWAEYfTQQKLSKERAEREAERAMHADSQRE 956
Cdd:pfam15921 602 RRLELQEfKILKDKKDAKIRELE-ARVSDLELEKVKLVNAGSERLRAVKDIKQE-RDQLLNEVKTSRNELNSLSEDYEVL 679
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 957 GTIISLTKEQAELTVRACELRAKeekllAEREALERERQELR-LEKDRLHKASL----------------RLQARAQEVE 1019
Cdd:pfam15921 680 KRNFRNKSEEMETTTNKLKMQLK-----SAQSELEQTRNTLKsMEGSDGHAMKVamgmqkqitakrgqidALQSKIQFLE 754
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 1020 HMSKVASKK----YEEGEQALQEAQQM---QNEQQGRLQVVQRQQEWLRQQE---------------------QRVHQEH 1071
Cdd:pfam15921 755 EAMTNANKEkhflKEEKNKLSQELSTVateKNKMAGELEVLRSQERRLKEKVanmevaldkaslqfaecqdiiQRQEQES 834
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 1907081397 1072 LSLA-QQRLQLDRVRQEVPASLPGLPPRVQGPAASSRDAVQAPASSS 1117
Cdd:pfam15921 835 VRLKlQHTLDVKELQGPGYTSNSSMKPRLLQPASFTRTHSNVPSSQS 881
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
813-1087 |
2.62e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 2.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 813 IRQQDEQLRALQERLGRQQRDMEEERNRLQEVIGKME------VRLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRKI 886
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEelrlevSELEEEIEELQKELYALANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 887 MVQQIAMEREELERAKSALLEEQKSvmnkcgeerrrlAAEWAEYFTQQKlskeraereaerAMHADSQREGTIISLTKEQ 966
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEE------------LAELEEKLEELK------------EELESLEAELEELEAELEE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 967 AELTVRACE--LRAKEEKLLAEREALERERQELRLEKDRLHKASLRLQARAQEVE-HMSKVASKKYEEGEQALQEAQQMQ 1043
Cdd:TIGR02168 370 LESRLEELEeqLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEeLLKKLEEAELKELQAELEELEEEL 449
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1907081397 1044 NEQQGRLQVVQRQQEWLRQQEQRVHQEHLSL------AQQRLQLDRVRQE 1087
Cdd:TIGR02168 450 EELQEELERLEEALEELREELEEAEQALDAAerelaqLQARLDSLERLQE 499
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
627-957 |
1.26e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.23 E-value: 1.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 627 QTKLSELEAQVRKLELERAQ---HRMLLESLQQRHQAdleliedAHRSRIKVLETSYQQREEQL---RREKEVLSAQHAS 700
Cdd:TIGR02169 190 DLIIDEKRQQLERLRREREKaerYQALLKEKREYEGY-------ELLKEKEALERQKEAIERQLaslEEELEKLTEEISE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 701 YCREAEQARAELVAQHQRQMAMAEQERDQEVARLRELqQASILEMRKDHEHQLQRLKMLKDQEIDAVTsatshtrSLNGI 780
Cdd:TIGR02169 263 LEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGEL-EAEIASLERSIAEKERELEDAEERLAKLEA-------EIDKL 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 781 IEQMEKFSSSLNTLSSRVEA--SHLTTSQQRELGIRQQ----DEQLRALQERLGRQQRDMEEERNRLQEVIGKmEVRLSE 854
Cdd:TIGR02169 335 LAEIEELEREIEEERKRRDKltEEYAELKEELEDLRAEleevDKEFAETRDELKDYREKLEKLKREINELKRE-LDRLQE 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 855 QSRLLEQERWRVAAEKTKAESAQRTLEEQRKIMVQQIAMEREELERAKSALLEEQKSV------MNKCGEERRRLAAEWA 928
Cdd:TIGR02169 414 ELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELydlkeeYDRVEKELSKLQRELA 493
|
330 340
....*....|....*....|....*....
gi 1907081397 929 EYFTQQKLSKERAEREAERAMHADSQREG 957
Cdd:TIGR02169 494 EAEAQARASEERVRGGRAVEEVLKASIQG 522
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
703-1095 |
1.44e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 56.13 E-value: 1.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 703 REAEQARAELVAQHQRQMAMAEQERDQ----EVARLRELQQasilEMRKDHEH--QLQRLKMLKDQEIDAVTSATSHTRS 776
Cdd:TIGR00618 196 AELLTLRSQLLTLCTPCMPDTYHERKQvlekELKHLREALQ----QTQQSHAYltQKREAQEEQLKKQQLLKQLRARIEE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 777 LNGIIEQMEKFSSSLNTlssRVEASHLTTSQQRELGIRQQDEQLRA-LQERLGRQQRDMEEERNRLQEVIGKMEVRLSEQ 855
Cdd:TIGR00618 272 LRAQEAVLEETQERINR---ARKAAPLAAHIKAVTQIEQQAQRIHTeLQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQ 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 856 SRLLEQERWRVAAEKT---KAESAQRTLEEQRKIMVQQIAMEREELERAKSALLEEQKSVMNKCG---EERRRLAAEWAE 929
Cdd:TIGR00618 349 TLHSQEIHIRDAHEVAtsiREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDtrtSAFRDLQGQLAH 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 930 YFTQQKLSKERAEREAERAMHADSQREGTIISLTKEQAELTVRACELRAKEEKLLAERE--ALERERQELRLEKDRLHKA 1007
Cdd:TIGR00618 429 AKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRkkAVVLARLLELQEEPCPLCG 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 1008 SLRLQARAQEVEHMSKVASKKYEEGEQALQEAQQMQNEQQGRLQVVQRQQEWLRQQEQRVHQEHLSLAQQrlqldrvRQE 1087
Cdd:TIGR00618 509 SCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQC-------DNR 581
|
....*...
gi 1907081397 1088 VPASLPGL 1095
Cdd:TIGR00618 582 SKEDIPNL 589
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
615-1083 |
1.54e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 56.11 E-value: 1.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 615 STAQLQVELLQSQTKLseLEAQVRKLELERAqhrmlLESLQQRhQADLELIEDAHRSRIKVLETSYQQREEQLRREKEVL 694
Cdd:COG3096 286 RALELRRELFGARRQL--AEEQYRLVEMARE-----LEELSAR-ESDLEQDYQAASDHLNLVQTALRQQEKIERYQEDLE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 695 SAQHASycREAEQARAElvAQHQRQMAMAEQER-DQEVARLR----ELQQAsiLEMRKDHEHQLQrlkmlkdQEIDAVTS 769
Cdd:COG3096 358 ELTERL--EEQEEVVEE--AAEQLAEAEARLEAaEEEVDSLKsqlaDYQQA--LDVQQTRAIQYQ-------QAVQALEK 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 770 AtshtRSLNGiieqmekfsssLNTLSSRVEASHLTTSQQRElgiRQQDEQLRALQERLgrqqRDMEEERNRLQEVIGKME 849
Cdd:COG3096 425 A----RALCG-----------LPDLTPENAEDYLAAFRAKE---QQATEEVLELEQKL----SVADAARRQFEKAYELVC 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 850 VRLSEQSRlleQERWRVAAEKTKAESAQRTLEEQrkimVQQIAMEREELERaksaLLEEQKSVmnkcgeerRRLAAEWAe 929
Cdd:COG3096 483 KIAGEVER---SQAWQTARELLRRYRSQQALAQR----LQQLRAQLAELEQ----RLRQQQNA--------ERLLEEFC- 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 930 yftqQKLSKERAEREAERAMHAdsQREGTIISLTKEQAELTVRACELRAkeekllaEREALERERQELRLEKDRLHKASL 1009
Cdd:COG3096 543 ----QRIGQQLDAAEELEELLA--ELEAQLEELEEQAAEAVEQRSELRQ-------QLEQLRARIKELAARAPAWLAAQD 609
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907081397 1010 RLQARAQEVEhmskvaskkyeegeQALQEAQQMQNeqqgrlqvvQRQQewLRQQEQRVHQEHLSLAQQRLQLDR 1083
Cdd:COG3096 610 ALERLREQSG--------------EALADSQEVTA---------AMQQ--LLEREREATVERDELAARKQALES 658
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
601-756 |
2.03e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 55.41 E-value: 2.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 601 YQKQLLAAQGQL-----QSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRS-RIK 674
Cdd:COG3206 187 LRKELEEAEAALeefrqKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSpVIQ 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 675 VLETSYQQREEQLRREKEVLSAQHASYcREAEQARAELVAQHQRQMAMAEQERDQEVARLRElQQASILEMRKDHEHQLQ 754
Cdd:COG3206 267 QLRAQLAELEAELAELSARYTPNHPDV-IALRAQIAALRAQLQQEAQRILASLEAELEALQA-REASLQAQLAQLEARLA 344
|
..
gi 1907081397 755 RL 756
Cdd:COG3206 345 EL 346
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
611-880 |
2.19e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 55.34 E-value: 2.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 611 QLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQ------ADLELIEDAHRSRikvlETSYQQRE 684
Cdd:COG3096 344 RQQEKIERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDslksqlADYQQALDVQQTR----AIQYQQAV 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 685 EQLRREKEVLSA----------QHASYCREAEQARAELVAQHQRqMAMAEQERDQ-------------EVARLRELQQA- 740
Cdd:COG3096 420 QALEKARALCGLpdltpenaedYLAAFRAKEQQATEEVLELEQK-LSVADAARRQfekayelvckiagEVERSQAWQTAr 498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 741 SILEMRKDHEHQLQRLKMLK----------DQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVE--ASHLTTSQQ 808
Cdd:COG3096 499 ELLRRYRSQQALAQRLQQLRaqlaeleqrlRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEelEEQAAEAVE 578
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 809 RELGIRQQDEQLRALQERLGRQQ---RDMEEERNRLQEVIGK--------MEVR--LSEQSRLLEQERWRVAAEKTKAES 875
Cdd:COG3096 579 QRSELRQQLEQLRARIKELAARApawLAAQDALERLREQSGEaladsqevTAAMqqLLEREREATVERDELAARKQALES 658
|
....*
gi 1907081397 876 AQRTL 880
Cdd:COG3096 659 QIERL 663
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
622-1083 |
4.64e-07 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 53.98 E-value: 4.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 622 ELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDahrsRIKVLETSYQQREEQLRREKEVLSAQhasy 701
Cdd:pfam05557 3 ELIESKARLSQLQNEKKQMELEHKRARIELEKKASALKRQLDRESD----RNQELQKRIRLLEKREAEAEEALREQ---- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 702 creAEQARAELvaQHQRQMAMAEQERDQEVARLRELQQASILEMRkdhehQLQRLKMLKDQEIDAVTSATSHTRSLNGII 781
Cdd:pfam05557 75 ---AELNRLKK--KYLEALNKKLNEKESQLADAREVISCLKNELS-----ELRRQIQRAELELQSTNSELEELQERLDLL 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 782 E----QMEKFSSSLNT-LSSRVEASHLTTSQQRELGIRQQD-EQLRALQERLGRQQrDMEEERNRLQEVIGKMEvRLSEQ 855
Cdd:pfam05557 145 KakasEAEQLRQNLEKqQSSLAEAEQRIKELEFEIQSQEQDsEIVKNSKSELARIP-ELEKELERLREHNKHLN-ENIEN 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 856 SRLLEQErwrvaaektkAESAQRTLEEQRKIMVQQIAMEReELERAKSALLEEQKSVMNKCGEERRRLAAewAEYFTQQK 935
Cdd:pfam05557 223 KLLLKEE----------VEDLKRKLEREEKYREEAATLEL-EKEKLEQELQSWVKLAQDTGLNLRSPEDL--SRRIEQLQ 289
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 936 LSKERAEREAERAMHADSQREGTIISLTKEQAELTVRACELRAKEEKLLAEREALERERQELRLEKDrLHKASLRLQARA 1015
Cdd:pfam05557 290 QREIVLKEENSSLTSSARQLEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERD-GYRAILESYDKE 368
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907081397 1016 QEVEHMSKVASKKYEEGEQALQEAQQMQNEQQGRLQVVQRQQEWLRQQEQRVHQEHLSLAQQRLQLDR 1083
Cdd:pfam05557 369 LTMSNYSPQLLERIEEAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQESLADP 436
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
617-1079 |
5.69e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.15 E-value: 5.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 617 AQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRH-QADLELIEDAhRSRIKVLETSYQQREEQLRREKEVLS 695
Cdd:COG4913 291 ELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIrGNGGDRLEQL-EREIERLERELEERERRRARLEALLA 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 696 AQHASYCREAE------QARAELVAQHQRQMAMAEQERDQEVARLRELQQA--------SILEMRKD--HEHQLQRLKML 759
Cdd:COG4913 370 ALGLPLPASAEefaalrAEAAALLEALEEELEALEEALAEAEAALRDLRRElreleaeiASLERRKSniPARLLALRDAL 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 760 KDQ----EIDA------VTSATSHTRSLNGIieqmEKFsssLNTLSSR--VEASHLttSQQRELgIRQQDEQLRALQERL 827
Cdd:COG4913 450 AEAlgldEAELpfvgelIEVRPEEERWRGAI----ERV---LGGFALTllVPPEHY--AAALRW-VNRLHLRGRLVYERV 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 828 GRQQRDMEEERNRLQEVIGKMEVRLSEQSRLLEQE---RWRVAaektKAESAQRTLEEQRKIMVQ-QIAMEREELE---- 899
Cdd:COG4913 520 RTGLPDPERPRLDPDSLAGKLDFKPHPFRAWLEAElgrRFDYV----CVDSPEELRRHPRAITRAgQVKGNGTRHEkddr 595
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 900 -------------RAKSALLEEQ----KSVMNKCGEERRRLAAEWAEYFTQQKLSKERAEREAERAMHADSQREgtIISL 962
Cdd:COG4913 596 rrirsryvlgfdnRAKLAALEAElaelEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAERE--IAEL 673
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 963 TKEQAELTVRACELRA---KEEKLLAEREALERERQELRLEKDRLHKaslRLQARAQEVEHMSKVASKKYEEGEQALQEA 1039
Cdd:COG4913 674 EAELERLDASSDDLAAleeQLEELEAELEELEEELDELKGEIGRLEK---ELEQAEEELDELQDRLEAAEDLARLELRAL 750
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 1907081397 1040 QQMQNEQQGRLQVVQRQQEWLrQQEQRVHQEHLSLAQQRL 1079
Cdd:COG4913 751 LEERFAAALGDAVERELRENL-EERIDALRARLNRAEEEL 789
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
594-899 |
6.63e-07 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 53.90 E-value: 6.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 594 SLLPG--SGYQKQLLAAQGQLQS----STAQLQVELLQSQTKLSELEAQVRKLELER--AQHRMlleslqqrhqadlELI 665
Cdd:PRK10929 140 SQLPQqqTEARRQLNEIERRLQTlgtpNTPLAQAQLTALQAESAALKALVDELELAQlsANNRQ-------------ELA 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 666 edahRSRIKVLETSYQQREEQLRREKEVLSAQHAsycREAEQA--RAELvaqhqrqmaMAEQERDQEVARLRELQQASil 743
Cdd:PRK10929 207 ----RLRSELAKKRSQQLDAYLQALRNQLNSQRQ---REAERAleSTEL---------LAEQSGDLPKSIVAQFKINR-- 268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 744 EMRKDHEHQLQRLKMLKDQEIDAvTSATSHTR-SLNGIIEQMEKFSSSlNTLSsrveashlttsqqrelgirqqdEQLRA 822
Cdd:PRK10929 269 ELSQALNQQAQRMDLIASQQRQA-ASQTLQVRqALNTLREQSQWLGVS-NALG----------------------EALRA 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 823 LQERLGR----QQRDMEEERNRLQevigkmevRLSEQSrLLEQERwrvAAEKTKAESAQRTLEEQRKIMVQQIAMEREEL 898
Cdd:PRK10929 325 QVARLPEmpkpQQLDTEMAQLRVQ--------RLRYED-LLNKQP---QLRQIRQADGQPLTAEQNRILDAQLRTQRELL 392
|
.
gi 1907081397 899 E 899
Cdd:PRK10929 393 N 393
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
829-1080 |
6.89e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.91 E-value: 6.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 829 RQQRDMEEERNRLQEVIGKME---VRLSEQSRlleqerwrvAAEKTKAESAQRTlEEQRKIMVQQIAMEREELERAKSAL 905
Cdd:TIGR02168 179 RKLERTRENLDRLEDILNELErqlKSLERQAE---------KAERYKELKAELR-ELELALLVLRLEELREELEELQEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 906 LEEQksvmnkcgEERRRLAAEWAEYftQQKLSKERAEREAERAMHADSQREgtIISLTKEQAELTVRACELRAKEEKLL- 984
Cdd:TIGR02168 249 KEAE--------EELEELTAELQEL--EEKLEELRLEVSELEEEIEELQKE--LYALANEISRLEQQKQILRERLANLEr 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 985 ------AEREALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEAQQMQNEQQGRLQVVQRQQE 1058
Cdd:TIGR02168 317 qleeleAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA 396
|
250 260
....*....|....*....|....
gi 1907081397 1059 WL--RQQEQRVHQEHLSLAQQRLQ 1080
Cdd:TIGR02168 397 SLnnEIERLEARLERLEDRRERLQ 420
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
744-1010 |
1.06e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.46 E-value: 1.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 744 EMRKDHEHQLQRLKmlkdQEIDAVTSATSHTRS-LNGIIEQMEKFSSSLNTLSSRVeashlttsQQRELGIRQQDEQLRA 822
Cdd:COG4942 20 DAAAEAEAELEQLQ----QEIAELEKELAALKKeEKALLKQLAALERRIAALARRI--------RALEQELAALEAELAE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 823 LQERLGRQQRDMEEERNRLQEVIGKMEvRLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRKIMVQQIAMEREELERAK 902
Cdd:COG4942 88 LEKEIAELRAELEAQKEELAELLRALY-RLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 903 SALLEEQKsvmnkcgeERRRLAAEWAEyfTQQKLSKERaereaeramhadSQREGTIISLTKEQAELTVRACELRAKEEK 982
Cdd:COG4942 167 AELEAERA--------ELEALLAELEE--ERAALEALK------------AERQKLLARLEKELAELAAELAELQQEAEE 224
|
250 260
....*....|....*....|....*...
gi 1907081397 983 LLAEREALERERQELRLEKDRLHKASLR 1010
Cdd:COG4942 225 LEALIARLEAEAAAAAERTPAAGFAALK 252
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
603-870 |
1.06e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.00 E-value: 1.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 603 KQLLAAQGQLQssTAQLQVELL-----------QSQTKLSELEAQVRKLELERAQHRM-LLESLQQRHQADLELIEDAHR 670
Cdd:COG4913 235 DDLERAHEALE--DAREQIELLepirelaeryaAARERLAELEYLRAALRLWFAQRRLeLLEAELEELRAELARLEAELE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 671 SRikvletsyQQREEQLRREKEVLSAQHAsycreaeQARAELVAQHQRQMAMAEQERDQEVARLRELQQasilemrkdhe 750
Cdd:COG4913 313 RL--------EARLDALREELDELEAQIR-------GNGGDRLEQLEREIERLERELEERERRRARLEA----------- 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 751 hQLQRLKMlkdqeidavtSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEAsHLTTSQQRELGIRQQDEQLRALQERLGRQ 830
Cdd:COG4913 367 -LLAALGL----------PLPASAEEFAALRAEAAALLEALEEELEALEE-ALAEAEAALRDLRRELRELEAEIASLERR 434
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1907081397 831 Q----RDMEEERNRLQEVIGKMEVRLSEQSRLLE----QERWRVAAEK 870
Cdd:COG4913 435 KsnipARLLALRDALAEALGLDEAELPFVGELIEvrpeEERWRGAIER 482
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
610-1019 |
1.13e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.12 E-value: 1.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 610 GQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHrSRIKVLETSYQQREEQLRR 689
Cdd:PRK02224 366 AELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELR-EREAELEATLRTARERVEE 444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 690 EKEVLSAqhaSYCREAEQARAElvAQHqrqmAMAEQERDQEVARLrELQQASILEMRKDHEHQLQRLKMLKDQEidavts 769
Cdd:PRK02224 445 AEALLEA---GKCPECGQPVEG--SPH----VETIEEDRERVEEL-EAELEDLEEEVEEVEERLERAEDLVEAE------ 508
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 770 atshtrslngiiEQMEKFSSSLNTLSSRVEASHLTTSQQREL--GIRQQDEQLRALQERLGRQQRDMEEERNRLQEVIGK 847
Cdd:PRK02224 509 ------------DRIERLEERREDLEELIAERRETIEEKRERaeELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAE 576
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 848 MEVRLSEQSRLLEQERwRVAAEKTKAESAQRTLEEQRKIMVQQIAMEREELERaksalLEEQKsvmnkcgEERRRLAAEw 927
Cdd:PRK02224 577 LNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKREALAELNDERRER-----LAEKR-------ERKRELEAE- 642
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 928 aeyFTQQKLSKeraereaeramhADSQREgtiiSLTKEQAELTVRACELRAKEEKLLAEREALERE---RQELRLEKDRL 1004
Cdd:PRK02224 643 ---FDEARIEE------------AREDKE----RAEEYLEQVEEKLDELREERDDLQAEIGAVENEleeLEELRERREAL 703
|
410
....*....|....*
gi 1907081397 1005 HKASLRLQARAQEVE 1019
Cdd:PRK02224 704 ENRVEALEALYDEAE 718
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
632-926 |
1.38e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.00 E-value: 1.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 632 ELEAQVRKL-----ELERAqHRMLLESLQQRHQadLELIEDAHRSRIKVLETSYQQREEQLRREKEVLSAQHASYCREAE 706
Cdd:COG4913 222 DTFEAADALvehfdDLERA-HEALEDAREQIEL--LEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELE 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 707 QARAELvAQHQRQMAMAEQERDQEVARLRELQQAsILEmrkdheHQLQRLKMLKDQeidavtsatshtrslngiIEQMEK 786
Cdd:COG4913 299 ELRAEL-ARLEAELERLEARLDALREELDELEAQ-IRG------NGGDRLEQLERE------------------IERLER 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 787 fssslntlssrveashltTSQQRELGIRQQDEQLRALQERLGRQQRDMEEERNRLQEVIGkmevRLSEQSRLLEQERWRV 866
Cdd:COG4913 353 ------------------ELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLE----ALEEELEALEEALAEA 410
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 867 AAEKTKAESAQRTLEEqrkimvqqiamEREELERAKSALLEEQKSVmnkcgeeRRRLAAE 926
Cdd:COG4913 411 EAALRDLRRELRELEA-----------EIASLERRKSNIPARLLAL-------RDALAEA 452
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
609-1082 |
2.07e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 2.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 609 QGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRSRIKVLE--TSYQQREEQ 686
Cdd:TIGR02169 289 QLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEeyAELKEELED 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 687 LRREKEVLSAQHASYCREAEQARAELvAQHQRQMAMAEQERDQEVARLRELQQAsILEMRKDHEHQLQRLKMLKDQEIDA 766
Cdd:TIGR02169 369 LRAELEEVDKEFAETRDELKDYREKL-EKLKREINELKRELDRLQEELQRLSEE-LADLNAAIAGIEAKINELEEEKEDK 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 767 VTSATSHTRSLNGIIEQMEKFSSSLNTLS-----------------SRVEAShLTTSQQRELGIRQQDEQLRA-LQERLG 828
Cdd:TIGR02169 447 ALEIKKQEWKLEQLAADLSKYEQELYDLKeeydrvekelsklqrelAEAEAQ-ARASEERVRGGRAVEEVLKAsIQGVHG 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 829 --RQQRDMEEER---------NRLQEV---------------------------IGKMEVRLSEQSRLLEQERWRVAAE- 869
Cdd:TIGR02169 526 tvAQLGSVGERYataievaagNRLNNVvveddavakeaiellkrrkagratflpLNKMRDERRDLSILSEDGVIGFAVDl 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 870 ---KTKAESA----------QRTLEEQRKIM---------------------------------------VQQIAMEREE 897
Cdd:TIGR02169 606 vefDPKYEPAfkyvfgdtlvVEDIEAARRLMgkyrmvtlegelfeksgamtggsraprggilfsrsepaeLQRLRERLEG 685
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 898 LERAKSALLEEQKSVMNKCGEERRRLAAEWAEYFTQQK-LSKERAEREAERAMHADSQREGTIIS--LTKEQAELTVRAC 974
Cdd:TIGR02169 686 LKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKeIEQLEQEEEKLKERLEELEEDLSSLEqeIENVKSELKELEA 765
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 975 ELRAKEEKLLAEREALE-------RER-QELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEAQQMQNEQ 1046
Cdd:TIGR02169 766 RIEELEEDLHKLEEALNdlearlsHSRiPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDL 845
|
570 580 590
....*....|....*....|....*....|....*.
gi 1907081397 1047 QGRLQVVQRQQEWLRQQEQRVHQEHLSLAQQRLQLD 1082
Cdd:TIGR02169 846 KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLE 881
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
602-1070 |
2.57e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.89 E-value: 2.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 602 QKQLLAAQGQLQSSTA---QLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRSRIKVLET 678
Cdd:TIGR00618 385 QQQKTTLTQKLQSLCKeldILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQES 464
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 679 SYQQREE-QLRREKEVLSAQHASYCREAEQaRAELVAQHQRQMAMAEQERDQEVARLREL------------QQASILEM 745
Cdd:TIGR00618 465 AQSLKEReQQLQTKEQIHLQETRKKAVVLA-RLLELQEEPCPLCGSCIHPNPARQDIDNPgpltrrmqrgeqTYAQLETS 543
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 746 RKDHEHQLQ----RLKMLKDQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEASHLTTSQQRELgirqQDEQLR 821
Cdd:TIGR00618 544 EEDVYHQLTserkQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACE----QHALLR 619
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 822 ALQERLGRQQRDMEEERnrLQEVIGKMEVRLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRKI-----MVQQIAMERE 896
Cdd:TIGR00618 620 KLQPEQDLQDVRLHLQQ--CSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALqkmqsEKEQLTYWKE 697
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 897 ELERAKSALLEEQKSVmnkcgEERRRLAAEWaeyftQQKLSKERAEREAERAMHADSQREGTIISLT--KEQAELTVRAC 974
Cdd:TIGR00618 698 MLAQCQTLLRELETHI-----EEYDREFNEI-----ENASSSLGSDLAAREDALNQSLKELMHQARTvlKARTEAHFNNN 767
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 975 ELRAKEEKLLAEREALERERQ-ELRLEKDRLHKASLRLQARAQEVEHMSKV-------ASKKYEEGEQALQEAQQMQNE- 1045
Cdd:TIGR00618 768 EEVTAALQTGAELSHLAAEIQfFNRLREEDTHLLKTLEAEIGQEIPSDEDIlnlqcetLVQEEEQFLSRLEEKSATLGEi 847
|
490 500
....*....|....*....|....*..
gi 1907081397 1046 --QQGRLQVVQRQQEWLRQQEQRVHQE 1070
Cdd:TIGR00618 848 thQLLKYEECSKQLAQLTQEQAKIIQL 874
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
800-1058 |
2.97e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 2.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 800 ASHLTTSQQREL-GIRQQDEQLRALQERLGRQQRDMEEERNRLQEVIGKMEVRLSEQSRLLEQERWRVAAEKTKAESAQR 878
Cdd:COG4942 18 QADAAAEAEAELeQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 879 TLEEQRKIMVQQIAMEREELERAKSALLEEQKSVmnkcGEERRRLaaEWAEYFTQQklskeraereaeramhadsqregt 958
Cdd:COG4942 98 ELEAQKEELAELLRALYRLGRQPPLALLLSPEDF----LDAVRRL--QYLKYLAPA------------------------ 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 959 iislTKEQAEltvracELRAKEEKLLAEREALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQE 1038
Cdd:COG4942 148 ----RREQAE------ELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAE 217
|
250 260
....*....|....*....|
gi 1907081397 1039 AQQMQNEQQGRLQVVQRQQE 1058
Cdd:COG4942 218 LQQEAEELEALIARLEAEAA 237
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
602-800 |
3.30e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 3.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 602 QKQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRhqadLELIEDahrsRIKVLETSYQ 681
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQE----LAALEA----ELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 682 QREEQLRREKEVLSAQHASYCREAEQARAEL-------------------VAQHQRQMAMAEQERDQEVARLREL---QQ 739
Cdd:COG4942 94 ELRAELEAQKEELAELLRALYRLGRQPPLALllspedfldavrrlqylkyLAPARREQAEELRADLAELAALRAEleaER 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907081397 740 ASILEMRKDHEHQLQRLKMLKDQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEA 800
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
681-902 |
3.73e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 3.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 681 QQREEQLRREKEVLSAQHASYCREAEQARAELVAQhQRQMAMAEQERDQEVARLRELQQaSILEMRKDHEHQLQRLKMLK 760
Cdd:COG4942 33 QQEIAELEKELAALKKEEKALLKQLAALERRIAAL-ARRIRALEQELAALEAELAELEK-EIAELRAELEAQKEELAELL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 761 dqeidavtsATSHTRSLNGIIEQMEKFSSSLNTLSSRVEASHLTTSQQREL-GIRQQDEQLRALQERLGRQQRDMEEERN 839
Cdd:COG4942 111 ---------RALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAeELRADLAELAALRAELEAERAELEALLA 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907081397 840 RLQEVIGKMEVRLSEQSRLLEQerwrVAAEKTKAESAQRTLEEQRKIMVQQIA-MEREELERAK 902
Cdd:COG4942 182 ELEEERAALEALKAERQKLLAR----LEKELAELAAELAELQQEAEELEALIArLEAEAAAAAE 241
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
627-1080 |
3.74e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.19 E-value: 3.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 627 QTKLSELEAQVRKLELERAQHRMLLEslqqrhqaDLELIEDAHRSRikvletsyQQREEQLRREKEVLSAQHASYCREAE 706
Cdd:PRK02224 212 ESELAELDEEIERYEEQREQARETRD--------EADEVLEEHEER--------REELETLEAEIEDLRETIAETERERE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 707 QARAElVAQHQRQMAMAEQERDQEVAR--LRELQQASILEMRKDHEHQLQRLKMLKDQEIDAVTSATSHTRSLNGIIEQM 784
Cdd:PRK02224 276 ELAEE-VRDLRERLEELEEERDDLLAEagLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 785 EKFSSSLN----TLSSRVEASHLTTSQQRElGIRQQDEQLRALQERLGRQQRDME----------EERNRLQEVIGKMEV 850
Cdd:PRK02224 355 EERAEELReeaaELESELEEAREAVEDRRE-EIEELEEEIEELRERFGDAPVDLGnaedfleelrEERDELREREAELEA 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 851 RL-SEQSRLLEQERWRVAA------EKTKAESAQRTLEEQRKimvqqiamEREELERAKSALLEEQKSVMNKC--GEERR 921
Cdd:PRK02224 434 TLrTARERVEEAEALLEAGkcpecgQPVEGSPHVETIEEDRE--------RVEELEAELEDLEEEVEEVEERLerAEDLV 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 922 RLAAEWAEYFTQQKLSKERAEREAERamhADSQREgTIISLTKEQAELTVRACELRAKEEKLLAERE-------ALERER 994
Cdd:PRK02224 506 EAEDRIERLEERREDLEELIAERRET---IEEKRE-RAEELRERAAELEAEAEEKREAAAEAEEEAEeareevaELNSKL 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 995 QELRLEKDRLHKASLRLQARAQEVEHMSKVASKkyeegeqaLQEAQQMQNEQQGRLqvvQRQQEWLRQQEQRVHQEHLSL 1074
Cdd:PRK02224 582 AELKERIESLERIRTLLAAIADAEDEIERLREK--------REALAELNDERRERL---AEKRERKRELEAEFDEARIEE 650
|
....*.
gi 1907081397 1075 AQQRLQ 1080
Cdd:PRK02224 651 AREDKE 656
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
644-1050 |
3.96e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 51.38 E-value: 3.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 644 RAQHRMLLESLQQRHQADLEliedahrSRIKVLETSYQQREEQLRRE-----KEVLSAQHASYCREAEQARAEL----VA 714
Cdd:pfam12128 196 RDVKSMIVAILEDDGVVPPK-------SRLNRQQVEHWIRDIQAIAGimkirPEFTKLQQEFNTLESAELRLSHlhfgYK 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 715 QHQRQMAMAEQERDQEVARLRELqqasiLEMRKDhehQLQRLKMLKDQEIDAVTSATSHTRS-LNGIIEQMEKFssslnt 793
Cdd:pfam12128 269 SDETLIASRQEERQETSAELNQL-----LRTLDD---QWKEKRDELNGELSAADAAVAKDRSeLEALEDQHGAF------ 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 794 LSSRVEASHLttSQQRELGIRQQDEQLRALQERLGRQQRDMEEERNRLQEVIGkmevrlSEQSRLLEQERWRVAAEKtka 873
Cdd:pfam12128 335 LDADIETAAA--DQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIK------EQNNRDIAGIKDKLAKIR--- 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 874 ESAQRTLEEQRKIMVQQIAMEREELERAKSALLEEQKSVMNKCGEERRRLAAewaeyftqqklskeraereaeramhads 953
Cdd:pfam12128 404 EARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQ---------------------------- 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 954 qreGTIISLTKEQAELTVRACE-LRAKEEKLLAEREALERERQELRLEKDrlhKASLRLQaraqevehmskVASKKYEEG 1032
Cdd:pfam12128 456 ---ATATPELLLQLENFDERIErAREEQEAANAEVERLQSELRQARKRRD---QASEALR-----------QASRRLEER 518
|
410
....*....|....*...
gi 1907081397 1033 EQALQEAQQMQNEQQGRL 1050
Cdd:pfam12128 519 QSALDELELQLFPQAGTL 536
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
601-1097 |
4.69e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 50.99 E-value: 4.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 601 YQKQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLElerAQHRMLL-ESLQQRH---------QADLELIEdahr 670
Cdd:pfam12128 288 LNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALE---DQHGAFLdADIETAAadqeqlpswQSELENLE---- 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 671 SRIKVLETSYQQREEQLRREKEVLSAQHASYCREAEQARAELVAQHQRQMAMAEQERDQEVARLRELQQASILEMRKDHE 750
Cdd:pfam12128 361 ERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEY 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 751 HQLQRLKMLKDQeIDAVTsATSHTrslngiIEQMEKFSSSLNTLSSRVEASHLTTSQ-QRELgiRQQDEQLRALQERLGR 829
Cdd:pfam12128 441 RLKSRLGELKLR-LNQAT-ATPEL------LLQLENFDERIERAREEQEAANAEVERlQSEL--RQARKRRDQASEALRQ 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 830 QQRDMEEERNRLQEVI-------GKMEVRLSEQSRLLEQERWRVAAE----KTKAESAQRTLEEQRKIMVQQIAMEREEL 898
Cdd:pfam12128 511 ASRRLEERQSALDELElqlfpqaGTLLHFLRKEAPDWEQSIGKVISPellhRTDLDPEVWDGSVGGELNLYGVKLDLKRI 590
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 899 ERAKSALLEEQKsvmnkcgeeRRRLAAEWAEYFTQQKLSKEraereaeramhADSQREGTIISLTKEQAELTVRACELRA 978
Cdd:pfam12128 591 DVPEWAASEEEL---------RERLDKAEEALQSAREKQAA-----------AEEQLVQANGELEKASREETFARTALKN 650
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 979 KeekllaeREALERERQELRLEKDRLHKASLRLQARAQE----VEHMSKVASKKYEEGEQALQE-AQQMQNEQQGRLQVV 1053
Cdd:pfam12128 651 A-------RLDLRRLFDEKQSEKDKKNKALAERKDSANErlnsLEAQLKQLDKKHQAWLEEQKEqKREARTEKQAYWQVV 723
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 1907081397 1054 qrqQEWLRQQEQRVHQEHLSL-AQQRLQLDRVRQEVPASLPGLPP 1097
Cdd:pfam12128 724 ---EGALDAQLALLKAAIAARrSGAKAELKALETWYKRDLASLGV 765
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
769-1087 |
4.71e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 51.11 E-value: 4.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 769 SATSHTRSLNGIIEQMEKFSSSLNTLSSRVEAshlttsQQRELGIRQQDEQlrALQERLGRQQRDM--EEERNRLQEVIG 846
Cdd:PRK04863 287 EALELRRELYTSRRQLAAEQYRLVEMARELAE------LNEAESDLEQDYQ--AASDHLNLVQTALrqQEKIERYQADLE 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 847 KMEVRLSEQSRLLEQERWRVAAEKTKAESA--------------QRTLEEQRKIMVQ-QIAMEReeLERAKSALLEEQKS 911
Cdd:PRK04863 359 ELEERLEEQNEVVEEADEQQEENEARAEAAeeevdelksqladyQQALDVQQTRAIQyQQAVQA--LERAKQLCGLPDLT 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 912 VMNkcgeerrrlAAEWAEYFTQQKLSKERAEREAERAMH----ADSQREGTIISLTK-------EQAELTVRACELRAKE 980
Cdd:PRK04863 437 ADN---------AEDWLEEFQAKEQEATEELLSLEQKLSvaqaAHSQFEQAYQLVRKiagevsrSEAWDVARELLRRLRE 507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 981 EKLLAER-EALERERQELRlekdrlhkASLRLQARAQEvehMSKVASKKYEEGEQALQEAQQMQNEQQGRLQVVQRQQEW 1059
Cdd:PRK04863 508 QRHLAEQlQQLRMRLSELE--------QRLRQQQRAER---LLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSE 576
|
330 340
....*....|....*....|....*...
gi 1907081397 1060 LRQQEQRVHQEHLSLAQQRLQLDRVRQE 1087
Cdd:PRK04863 577 ARERRMALRQQLEQLQARIQRLAARAPA 604
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
620-878 |
4.90e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 50.89 E-value: 4.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 620 QVELLQSQTKLSELEaQVRKLELERAQHRML-LESLQQRHQADLELI--EDAHRSRIKVLETSYQQREEQLRREKEVLSA 696
Cdd:pfam17380 349 ELERIRQEERKRELE-RIRQEEIAMEISRMReLERLQMERQQKNERVrqELEAARKVKILEEERQRKIQQQKVEMEQIRA 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 697 QHASYCREAEQARAELVAQHQRQMAMAEQERDQEVARLRElqqasilemrkdHEHQLQRLKMLKDQEIDAVTSATSHTRS 776
Cdd:pfam17380 428 EQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQ------------QEEERKRKKLELEKEKRDRKRAEEQRRK 495
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 777 lngIIEQMEKFSSSLNTLSSRVEASHLTTSQQRELGIRQQDEQLRALQERlgRQQRDMeEERNRLQEvigKMEVRLSEQS 856
Cdd:pfam17380 496 ---ILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEER--RKQQEM-EERRRIQE---QMRKATEERS 566
|
250 260
....*....|....*....|..
gi 1907081397 857 RLLEQERWRVAAEKTKAESAQR 878
Cdd:pfam17380 567 RLEAMEREREMMRQIVESEKAR 588
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
619-1049 |
7.37e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.50 E-value: 7.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 619 LQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRSRIKVLETSYQQREeQLRR---EKEVLS 695
Cdd:pfam15921 108 LRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIE-QLRKmmlSHEGVL 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 696 AQHASYCREAEQARAELVAQHQRQMAMAEQERDQEVAR-LRELQ-QASILEMRK-DHEHQLQRLK--------MLKDQEI 764
Cdd:pfam15921 187 QEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKiLRELDtEISYLKGRIfPVEDQLEALKsesqnkieLLLQQHQ 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 765 DAVTSATS-HTRSLNGIIEQMEKFSSSLNTLSSRVEASHLTTSQQRELGIRQQDE------QLRALQERLGRQQRDMEEE 837
Cdd:pfam15921 267 DRIEQLISeHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDlestvsQLRSELREAKRMYEDKIEE 346
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 838 RNRlQEVIGKMEV--------RLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRK----------IMVQQIAMEREELE 899
Cdd:pfam15921 347 LEK-QLVLANSELtearterdQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKrlwdrdtgnsITIDHLRRELDDRN 425
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 900 RAKSALLEEQKSVMNKC-GEERRRLAAEWAEYFTQQKLSKERAEREAERAMHADSQREGTIISLTKEQAELTV------- 971
Cdd:pfam15921 426 MEVQRLEALLKAMKSECqGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVsdltasl 505
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 972 ----RACELRAKEEKLLAEREALE-RERQELRLEKDRLHKA-----SLRLQARA---------QEVEHMSKVASKKYEEG 1032
Cdd:pfam15921 506 qekeRAIEATNAEITKLRSRVDLKlQELQHLKNEGDHLRNVqteceALKLQMAEkdkvieilrQQIENMTQLVGQHGRTA 585
|
490
....*....|....*..
gi 1907081397 1033 EQALQEAQQMQNEQQGR 1049
Cdd:pfam15921 586 GAMQVEKAQLEKEINDR 602
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
807-1055 |
8.48e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.02 E-value: 8.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 807 QQRELGIRQQDEQLRALQERLGRQQRDMEEERNRLQEVIGK-MEVRLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRK 885
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKnGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLA 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 886 IMVQQIAMEREELERAKsalleeQKSVMNKCGEERRRLAAEWAEYftQQKLSKEraereaeramHADsqregtIISLTKE 965
Cdd:COG3206 244 ALRAQLGSGPDALPELL------QSPVIQQLRAQLAELEAELAEL--SARYTPN----------HPD------VIALRAQ 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 966 QAELTVR-ACELRAKEEKLLAEREALERERQELRLEKDRLHKASLRL---QARAQEVEHMSKVASKKYEEGEQALQEAQQ 1041
Cdd:COG3206 300 IAALRAQlQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELpelEAELRRLEREVEVARELYESLLQRLEEARL 379
|
250
....*....|....
gi 1907081397 1042 MQNEQQGRLQVVQR 1055
Cdd:COG3206 380 AEALTVGNVRVIDP 393
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
673-1052 |
1.01e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 50.05 E-value: 1.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 673 IKVLETSYQQREEQLRREKEVLSAQ--HASYCREAEQARAELVAQHqrqmamAEQERDQEVARLRELQQASILEMRKDHE 750
Cdd:TIGR00606 185 IKALETLRQVRQTQGQKVQEHQMELkyLKQYKEKACEIRDQITSKE------AQLESSREIVKSYENELDPLKNRLKEIE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 751 HQLQRLKMLKDQeidavtsatshTRSLNGIIEQMEKFSSSLntlssrveashlttSQQRELGIRQQDEQLRALQERLGRQ 830
Cdd:TIGR00606 259 HNLSKIMKLDNE-----------IKALKSRKKQMEKDNSEL--------------ELKMEKVFQGTDEQLNDLYHNHQRT 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 831 QRDMEEERNRLQEVIGKmevrLSEQSRLLEQERWRVAAEKTKAE-SAQRTLEEQRK----IMVQQIAMEREELERakSAL 905
Cdd:TIGR00606 314 VREKERELVDCQRELEK----LNKERRLLNQEKTELLVEQGRLQlQADRHQEHIRArdslIQSLATRLELDGFER--GPF 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 906 LEEQKSVMNKCGEERRRLAAEWAEYFTQQKLSKERAEREAERAMHADSQREGTIIS-----LTKEQAELTVRACELR--- 977
Cdd:TIGR00606 388 SERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIElkkeiLEKKQEELKFVIKELQqle 467
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907081397 978 AKEEKLLAEREALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEgeqalQEAQQMQNEQQGRLQV 1052
Cdd:TIGR00606 468 GSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLD-----QEMEQLNHHTTTRTQM 537
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
617-900 |
1.33e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 49.65 E-value: 1.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 617 AQLQVELLQSQTKLSELEAQVRKLE-LERAQHRmlLESLQQRHQADLELIEDaHRSRIKvletSYQQREEQLRREKEVLS 695
Cdd:PRK02224 478 EELEAELEDLEEEVEEVEERLERAEdLVEAEDR--IERLEERREDLEELIAE-RRETIE----EKRERAEELRERAAELE 550
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 696 AQhASYCREAEQARAELVAQHQRQMAMAEQERDQEVARLRELQQ-ASILEMRKDHEHQLQRLKmlkdQEIDAVTSATSHT 774
Cdd:PRK02224 551 AE-AEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERiRTLLAAIADAEDEIERLR----EKREALAELNDER 625
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 775 RslngiiEQMEKFSSSLNTLSSRVEASHLTTSQQRelgiRQQDEQLralQERLGRQQRDMEEERNRLQEVIGKMEVRLSE 854
Cdd:PRK02224 626 R------ERLAEKRERKRELEAEFDEARIEEARED----KERAEEY---LEQVEEKLDELREERDDLQAEIGAVENELEE 692
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1907081397 855 QSRL------LEQERWRVAAEKTKAESAQRTLEEQRKIMVQQiamEREELER 900
Cdd:PRK02224 693 LEELrerreaLENRVEALEALYDEAEELESMYGDLRAELRQR---NVETLER 741
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
603-1079 |
1.37e-05 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 49.35 E-value: 1.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 603 KQLLAAQGQLQSSTAQLQVELLQSQT----KLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRsRIKVLET 678
Cdd:pfam05557 82 KKYLEALNKKLNEKESQLADAREVISclknELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQ-LRQNLEK 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 679 SYQQREEQLRREKEvLSAQHASYcreaEQARAELVAQHQRQMAMAEQERDQE-----VARLRELQQASIL--EMRKDHEH 751
Cdd:pfam05557 161 QQSSLAEAEQRIKE-LEFEIQSQ----EQDSEIVKNSKSELARIPELEKELErlrehNKHLNENIENKLLlkEEVEDLKR 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 752 QLQRLKMLKDQEIDA--------------VTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEASHLTTSQQRELGIRQQD 817
Cdd:pfam05557 236 KLEREEKYREEAATLelekekleqelqswVKLAQDTGLNLRSPEDLSRRIEQLQQREIVLKEENSSLTSSARQLEKARRE 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 818 eqlraLQERLGRQQRDMEEERNRLQEVIGKMEvRLSEQSRLLEQERWRVAA-------EKTKAESAQRTLEEQRKI--MV 888
Cdd:pfam05557 316 -----LEQELAQYLKKIEDLNKKLKRHKALVR-RLQRRVLLLTKERDGYRAilesydkELTMSNYSPQLLERIEEAedMT 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 889 QQIAMEREELERAKSALLEEQKSVMNKCGEERRRLaaewaeyftqQKLSKERAereaeramHADSqregtiiSLTKEQAE 968
Cdd:pfam05557 390 QKMQAHNEEMEAQLSVAEEELGGYKQQAQTLEREL----------QALRQQES--------LADP-------SYSKEEVD 444
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 969 ltvracELRAKEEKLLAEREALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYeegeQALQEAQQMQNEQQG 1048
Cdd:pfam05557 445 ------SLRRKLETLELERQRLREQKNELEMELERRCLQGDYDPKKTKVLHLSMNPAAEAY----QQRKNQLEKLQAEIE 514
|
490 500 510
....*....|....*....|....*....|.
gi 1907081397 1049 RLQVVQRQQEWLRQQEQRVHQEHLSLAQQRL 1079
Cdd:pfam05557 515 RLKRLLKKLEDDLEQVLRLPETTSTMNFKEV 545
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
603-1050 |
1.84e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.91 E-value: 1.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 603 KQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLqqrhqadlelieDAHRSRIKVLETSYQQ 682
Cdd:PRK03918 182 EKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEL------------EELKEEIEELEKELES 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 683 REEQLRREKEVLsaqhasycREAEQARAELVAQhqrqmamaEQERDQEVARLRELQQAS-----ILEMRKDHEHQLQRLK 757
Cdd:PRK03918 250 LEGSKRKLEEKI--------RELEERIEELKKE--------IEELEEKVKELKELKEKAeeyikLSEFYEEYLDELREIE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 758 MLKdqeidavtsaTSHTRSLNGIIEQMEKfsssLNTLSSRVEashlttsqqrELgirqqDEQLRALQERLGRqqrdMEEE 837
Cdd:PRK03918 314 KRL----------SRLEEEINGIEERIKE----LEEKEERLE----------EL-----KKKLKELEKRLEE----LEER 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 838 RNRLQEVIGKMEVRLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRKIMVQQIAMEREELERAKSAL--LEEQKSVMNK 915
Cdd:PRK03918 361 HELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIeeLKKAKGKCPV 440
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 916 CG-----EERRRLAAEWAEyftqqKLSKERAEREAERAMHADSQREGTII-SLTKEQAELTVR---ACELRAKEEKLLA- 985
Cdd:PRK03918 441 CGrelteEHRKELLEEYTA-----ELKRIEKELKEIEEKERKLRKELRELeKVLKKESELIKLkelAEQLKELEEKLKKy 515
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907081397 986 EREALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKyEEGEQALQEAQQMQNEQQGRL 1050
Cdd:PRK03918 516 NLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKL-AELEKKLDELEEELAELLKEL 579
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
784-1078 |
2.17e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 48.95 E-value: 2.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 784 MEKFSSSLNTLSSRVEASHLttsqQRELGIRQQDEQLRALQERLGRQQRDMEEERNRLQEVIGKMEVRLSEQSRLLEQER 863
Cdd:pfam05483 192 IEKMILAFEELRVQAENARL----EMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESR 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 864 WRV--AAEKTKAESaqrtleEQRKIMVQQIAMEREELERAKSALleeQKSV-MNKCGEERRRLAAEWAEYFTQQKLSKER 940
Cdd:pfam05483 268 DKAnqLEEKTKLQD------ENLKELIEKKDHLTKELEDIKMSL---QRSMsTQKALEEDLQIATKTICQLTEEKEAQME 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 941 aereaeramhaDSQREGTIISLTKEQAELTVraCELRakeekllaerEALERERQELRLEKDRLHKASLRLQARAQEVEH 1020
Cdd:pfam05483 339 -----------ELNKAKAAHSFVVTEFEATT--CSLE----------ELLRTEQQRLEKNEDQLKIITMELQKKSSELEE 395
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1907081397 1021 MSKVASKKyeegEQALQEAQQMQNEQQgRLQVVQRQQEWLRQQEQRVHQEHLSLAQQR 1078
Cdd:pfam05483 396 MTKFKNNK----EVELEELKKILAEDE-KLLDEKKQFEKIAEELKGKEQELIFLLQAR 448
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
603-1005 |
2.27e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 48.80 E-value: 2.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 603 KQLLAAQGQLQSSTAQLQVE---LLQSQTKLSELEAQVRKLE---------LERAQHRMLLESLQQRHQADLELIEDAHR 670
Cdd:PRK04863 286 EEALELRRELYTSRRQLAAEqyrLVEMARELAELNEAESDLEqdyqaasdhLNLVQTALRQQEKIERYQADLEELEERLE 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 671 SRIKVLETSYQQREEQLRR----EKEVLS--AQHASYCR--EAEQARAElvaqhQRQMAMAEQERDQEVARLRELQQASI 742
Cdd:PRK04863 366 EQNEVVEEADEQQEENEARaeaaEEEVDElkSQLADYQQalDVQQTRAI-----QYQQAVQALERAKQLCGLPDLTADNA 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 743 ---LEMRKDHEHQL-QRLKMLKDQEIDAVTSATSHT------RSLNGIIEQMEKFSSSLNTLSSRVEASHLTtsqQRELG 812
Cdd:PRK04863 441 edwLEEFQAKEQEAtEELLSLEQKLSVAQAAHSQFEqayqlvRKIAGEVSRSEAWDVARELLRRLREQRHLA---EQLQQ 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 813 IRQQdeqLRALQERLgRQQRDMEEERNRLQEVIGKMEVRLSEQSRLL-EQERWRVAAEKTKAESAQRTLEEQRKImvQQI 891
Cdd:PRK04863 518 LRMR---LSELEQRL-RQQQRAERLLAEFCKRLGKNLDDEDELEQLQeELEARLESLSESVSEARERRMALRQQL--EQL 591
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 892 AMEREELERaksalleeqksvmnkcgeerrrLAAEWAEYftQQKLSKERAEREAERamhADSQRegtIISLTKEQAEltv 971
Cdd:PRK04863 592 QARIQRLAA----------------------RAPAWLAA--QDALARLREQSGEEF---EDSQD---VTEYMQQLLE--- 638
|
410 420 430
....*....|....*....|....*....|....
gi 1907081397 972 racelraKEEKLLAEREALERERQELRLEKDRLH 1005
Cdd:PRK04863 639 -------RERELTVERDELAARKQALDEEIERLS 665
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
595-744 |
2.61e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.47 E-value: 2.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 595 LLPGSGYQKQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLEL---ERAQHRMLLESLQQRHQADLELIE----- 666
Cdd:COG3206 207 LVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDalpELLQSPVIQQLRAQLAELEAELAElsary 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 667 -DAH------RSRIKVLETSYQQREEQ----LRREKEVLSAQHASYCREAEQARAELVAQHQRQMAMAEQERDQEVAR-- 733
Cdd:COG3206 287 tPNHpdvialRAQIAALRAQLQQEAQRilasLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARel 366
|
170
....*....|....*
gi 1907081397 734 ----LRELQQASILE 744
Cdd:COG3206 367 yeslLQRLEEARLAE 381
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
642-1037 |
2.76e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.58 E-value: 2.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 642 LERAQHRMLLESLQQRhqadlELIEDAHRSRIKvletsyQQREEQLRREKEVLSAQHASYCREAEQARAELVAQHQRQMA 721
Cdd:pfam17380 275 LHIVQHQKAVSERQQQ-----EKFEKMEQERLR------QEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMA 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 722 MaeqERDQEVARLRElqqasilemrkdhEHQLQRLKMLKDQEIDAVTSATSHTRSLngiieQMEKfssslntlssrveas 801
Cdd:pfam17380 344 M---ERERELERIRQ-------------EERKRELERIRQEEIAMEISRMRELERL-----QMER--------------- 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 802 hlttsQQRELGIRQQDEQlralqerlGRQQRDMEEERNR-LQEVIGKMEVRLSEQSRLLEQERWRVAAEKTKAESAQRTL 880
Cdd:pfam17380 388 -----QQKNERVRQELEA--------ARKVKILEEERQRkIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLE 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 881 EEQRKIMVQQIAMEREELERAKSALLEEQKSvmNKCGEERRRLAAEWAEYFTQQKLSKERAEREAERAMHADSQRegtii 960
Cdd:pfam17380 455 EQERQQQVERLRQQEEERKRKKLELEKEKRD--RKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQK----- 527
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907081397 961 SLTKEQaeltvracELRAKEEKLLAEREALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQ 1037
Cdd:pfam17380 528 AIYEEE--------RRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAEYEATTP 596
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
602-996 |
3.23e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 48.18 E-value: 3.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 602 QKQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQV-----RKLELERAQHRMLLESLQQRHQADLELIEDAHRSRIKVL 676
Cdd:pfam05483 362 EELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTkfknnKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQEL 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 677 ETSYQQREEQ---LRREKEVLSAQHASYCREAEQARAEL---------VAQHQRQMAMAEQERDQEVARLR-EL--QQAS 741
Cdd:pfam05483 442 IFLLQAREKEihdLEIQLTAIKTSEEHYLKEVEDLKTELekeklknieLTAHCDKLLLENKELTQEASDMTlELkkHQED 521
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 742 ILEMRKDHEHQLQRLKMLKDQEIDAVTSATSHTRSLngiIEQMEKFSSSLNTlSSRVEASHLTTSQQRELGIRQQDEQLR 821
Cdd:pfam05483 522 IINCKKQEERMLKQIENLEEKEMNLRDELESVREEF---IQKGDEVKCKLDK-SEENARSIEYEVLKKEKQMKILENKCN 597
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 822 ALQERLGRQQRDMEEernrLQEVIGKMEVRLSEQSRLLEQERWRVAAEKTKAESAQRTLEE-----QRKIMVQQIAMER- 895
Cdd:pfam05483 598 NLKKQIENKNKNIEE----LHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEiidnyQKEIEDKKISEEKl 673
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 896 -EELERAKSALLEE---QKSVMNKCGEERRRLAAEWAEYFTQQKLSKERAEREAERAMHADSQREGTIISLTKEQAELTV 971
Cdd:pfam05483 674 lEEVEKAKAIADEAvklQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIKA 753
|
410 420
....*....|....*....|....*
gi 1907081397 972 RACELRAKEEKLLAEREALERERQE 996
Cdd:pfam05483 754 ELLSLKKQLEIEKEEKEKLKMEAKE 778
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
622-1045 |
3.96e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.14 E-value: 3.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 622 ELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRSRIKVLETSyqQREEQLRREKEVLSAQHASY 701
Cdd:PRK03918 287 ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELK--KKLKELEKRLEELEERHELY 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 702 creaEQARAELVAQHQRQMAMAEQERDQEVARLRELQQASiLEMRKDHEHQLQRLKMLKDQE------IDAVTSA----- 770
Cdd:PRK03918 365 ----EEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAK-EEIEEEISKITARIGELKKEIkelkkaIEELKKAkgkcp 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 771 ---------------TSHTRSLNGIIEQMEKFSSSLNTLSSRVEASHLTTSQQREL-GIRQQDEQLRALQERLG------ 828
Cdd:PRK03918 440 vcgrelteehrkellEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELiKLKELAEQLKELEEKLKkynlee 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 829 --RQQRDMEEERNRLQEVIGKMEVRLSEQSRLLEQERwrvaaEKTKAESAQRTLEEQRKIM-----------VQQIAMER 895
Cdd:PRK03918 520 leKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKK-----KLAELEKKLDELEEELAELlkeleelgfesVEELEERL 594
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 896 EELERAKSALLEEQKSVMNKCGEERRRLAAEWAEYFTQQKLSKERAEREAERAMHADSQREGTiislTKEQAELTVRACE 975
Cdd:PRK03918 595 KELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYS----EEEYEELREEYLE 670
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 976 LRAKEEKLLAEREALERERQE-------LRLEKDRLHKASLRLQ----ARAQEVEHMSKVASKKYEEGEQALQEAQQMQN 1044
Cdd:PRK03918 671 LSRELAGLRAELEELEKRREEikktlekLKEELEEREKAKKELEklekALERVEELREKVKKYKALLKERALSKVGEIAS 750
|
.
gi 1907081397 1045 E 1045
Cdd:PRK03918 751 E 751
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
966-1046 |
4.24e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 47.47 E-value: 4.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 966 QAELTVRACELRAKEEKLLAEREALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEAQQMQNE 1045
Cdd:PRK12704 74 EKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAE 153
|
.
gi 1907081397 1046 Q 1046
Cdd:PRK12704 154 E 154
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
662-1044 |
4.44e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.04 E-value: 4.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 662 LELIEDAHRSRIKVLETsyqQREEQLRREKEVLsAQHASYCREAEQARAELVAQHQRQMAmAEQERDQEVARLRELQQAS 741
Cdd:pfam02463 156 LEIEEEAAGSRLKRKKK---EALKKLIEETENL-AELIIDLEELKLQELKLKEQAKKALE-YYQLKEKLELEEEYLLYLD 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 742 ILEMRKDHEHQLQRLKMLKDQEIDavtsatshtrSLNGIIEQMEKfssslntlssrveashlttSQQRELGIRQQDEQLR 821
Cdd:pfam02463 231 YLKLNEERIDLLQELLRDEQEEIE----------SSKQEIEKEEE-------------------KLAQVLKENKEEEKEK 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 822 ALQER-----------LGRQQRDMEEERNRLQEVIGKMEVRLSEQSRLLEQERwRVAAEKTKAESAQRTLEEQRKIMVQQ 890
Cdd:pfam02463 282 KLQEEelkllakeeeeLKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEK-EEIEELEKELKELEIKREAEEEEEEE 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 891 IAMEREELERAKSALLEEQKSVMNKCGEERRRLAAEWAEYFTQQKLSKERAEREAERAMHADSqregTIISLTKEQAELT 970
Cdd:pfam02463 361 LEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKE----EKKEELEILEEEE 436
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907081397 971 VRACELRAKEEKLLAEREALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEAQQMQN 1044
Cdd:pfam02463 437 ESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLK 510
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
616-840 |
5.85e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 5.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 616 TAQLQVELLQSQtkLSELEAQVRKLELERAQHRMLLESLQQRHQAdLELIEDAHRSRIKVLetSYQQREEQLRREKEVLS 695
Cdd:COG4913 607 DNRAKLAALEAE--LAELEEELAEAEERLEALEAELDALQERREA-LQRLAEYSWDEIDVA--SAEREIAELEAELERLD 681
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 696 AQHASYcREAEQARAELVAQHQRqmamAEQERDQEVARLRELQQAsilemRKDHEHQLQRlkmLKDQEIDAVTSATSHTR 775
Cdd:COG4913 682 ASSDDL-AALEEQLEELEAELEE----LEEELDELKGEIGRLEKE-----LEQAEEELDE---LQDRLEAAEDLARLELR 748
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907081397 776 SLngiieqmekfssslntLSSRVEASHLTTSQQRELgiRQQDEQLRALQERLGRQQRDMEEERNR 840
Cdd:COG4913 749 AL----------------LEERFAAALGDAVERELR--ENLEERIDALRARLNRAEEELERAMRA 795
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
69-529 |
6.02e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 47.63 E-value: 6.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 69 KFLPKDSVEGL----AGADAEASSVSDADP---QVFLQNMKDLDSMDDDLFGRMKSHQ-------PSGKGAAKGPGKEGP 134
Cdd:PHA03247 2424 RFVGSEEIEELpfvsPGGDVLAGLAADGDPffaRTILGAPFSLSLLLGELFPGAPVYRrpaearfPFAAGAAPDPGGGGP 2503
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 135 SN-------HKPAGTLTANEkgytmPTKKPPPSSSKTGLQ-YKKFSFEDFEDPlAGLLSDEEEETATKLPAVERKPAPKS 206
Cdd:PHA03247 2504 PDpdappapSRLAPAILPDE-----PVGEPVHPRMLTWIRgLEELASDDAGDP-PPPLPPAAPPAAPDRSVPPPRPAPRP 2577
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 207 PGAAAG---QGPSVPLTP--GDTPIrkkellfDEGDDIMTTLGFEDSPKAERKKTGDQEGPLPARSkldELLGRGTAAkl 281
Cdd:PHA03247 2578 SEPAVTsraRRPDAPPQSarPRAPV-------DDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAAN---EPDPHPPPT-- 2645
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 282 lTRPGTGERREfqldkkyqKMGGEESVPARDKEDSwddetltfgayKPTVASSEGRQSRRQSVR-----FLGEGGPDPKG 356
Cdd:PHA03247 2646 -VPPPERPRDD--------PAPGRVSRPRRARRLG-----------RAAQASSPPQRPRRRAARptvgsLTSLADPPPPP 2705
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 357 ESlgfKQSSPPASSPIHPRKGGADWLGLKD--NDLDLLSPSPVQKAQQEDSPMTPSLLPPTNQPSAPEPQSAPTGLPSAA 434
Cdd:PHA03247 2706 PT---PEPAPHALVSATPLPPGPAAARQASpaLPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRR 2782
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 435 KPPAKGArpSLKASQASSPKASEEKedDWLSHVISQKKSQNLAREERAGPPKDLASLGSLGQTPSGSLPVAQVLEQ--AP 512
Cdd:PHA03247 2783 LTRPAVA--SLSESRESLPSPWDPA--DPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGsvAP 2858
|
490
....*....|....*..
gi 1907081397 513 AGEASKPTTQGMAAVRP 529
Cdd:PHA03247 2859 GGDVRRRPPSRSPAAKP 2875
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
608-899 |
1.03e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.55 E-value: 1.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 608 AQGQLQSSTAQLQVELLQSQTKLSELeaqVRKLELERAQHR----------MLLESLQQRHQADLELIE------DAHRS 671
Cdd:COG3206 74 SSLSASDSPLETQIEILKSRPVLERV---VDKLNLDEDPLGeeasreaaieRLRKNLTVEPVKGSNVIEisytspDPELA 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 672 RIKV-------LETSYQQREEQLRREKEVLSAQHASYCREAEQARAELVA-QHQRQMAMAEQERDQEVARLREL--QQAS 741
Cdd:COG3206 151 AAVAnalaeayLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEfRQKNGLVDLSEEAKLLLQQLSELesQLAE 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 742 ILEMRKDHEHQLQRLKMLKDQEIDAVTSATSHTRsLNGIIEQMEKFSSSLNTLSSRVEASHLTtsqqrelgIRQQDEQLR 821
Cdd:COG3206 231 ARAELAEAEARLAALRAQLGSGPDALPELLQSPV-IQQLRAQLAELEAELAELSARYTPNHPD--------VIALRAQIA 301
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907081397 822 ALQERLGRQQRDMEEERNRLQEVIGKMEVRLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRKIMvQQIAMEREELE 899
Cdd:COG3206 302 ALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELY-ESLLQRLEEAR 378
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
699-1092 |
1.04e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.87 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 699 ASYCREAEQARaelvaQHQRQMAMAEQERDQEVARLRELQQASIlEMRKDHEHQLQRLKMLkdqEIDaVTSATSHtrsln 778
Cdd:COG3096 271 ADYMRHANERR-----ELSERALELRRELFGARRQLAEEQYRLV-EMARELEELSARESDL---EQD-YQAASDH----- 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 779 giieqmekfsssLNTLSSRVEashlttsQQRELGIRQQDeqLRALQERLgRQQRDMEEERNRLQEvigkmevRLSEQSRL 858
Cdd:COG3096 336 ------------LNLVQTALR-------QQEKIERYQED--LEELTERL-EEQEEVVEEAAEQLA-------EAEARLEA 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 859 LEQErwrVAAEKTKAESAQRTLEEQ--RKIMVQQiAMEReeLERAKSALLEEQKSVMNkcgeerrrlAAEWAEYFTQQKL 936
Cdd:COG3096 387 AEEE---VDSLKSQLADYQQALDVQqtRAIQYQQ-AVQA--LEKARALCGLPDLTPEN---------AEDYLAAFRAKEQ 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 937 SKERAEREAERAMH----ADSQREGTIISLTK-------EQA-----ELTVRACELRAKEEKL------LAEREALERER 994
Cdd:COG3096 452 QATEEVLELEQKLSvadaARRQFEKAYELVCKiageverSQAwqtarELLRRYRSQQALAQRLqqlraqLAELEQRLRQQ 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 995 QELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEAQQMQNEQQGRLQVVQRQQEWLRQQEQRVHQehlsl 1074
Cdd:COG3096 532 QNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLA----- 606
|
410
....*....|....*...
gi 1907081397 1075 AQQRLQldRVRQEVPASL 1092
Cdd:COG3096 607 AQDALE--RLREQSGEAL 622
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
602-923 |
1.10e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.65 E-value: 1.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 602 QKQLLAAQGQ------LQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQA----DLELIEDAHRS 671
Cdd:pfam15921 447 ERQMAAIQGKneslekVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAieatNAEITKLRSRV 526
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 672 RIKVLETSYQQREEQ----LRREKEVLSAQHA------SYCREAEQARAELVAQHQR-----QMAMAEQERDQEVARLrE 736
Cdd:pfam15921 527 DLKLQELQHLKNEGDhlrnVQTECEALKLQMAekdkviEILRQQIENMTQLVGQHGRtagamQVEKAQLEKEINDRRL-E 605
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 737 LQQASILEMRKDHE-HQLQ-RLKMLKDQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTlsSRVEASHLTTSQQ-RELGI 813
Cdd:pfam15921 606 LQEFKILKDKKDAKiRELEaRVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKT--SRNELNSLSEDYEvLKRNF 683
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 814 RQQDEQLRALQERLGRQ----QRDMEEERNRLQEVIG-----------------------------------------KM 848
Cdd:pfam15921 684 RNKSEEMETTTNKLKMQlksaQSELEQTRNTLKSMEGsdghamkvamgmqkqitakrgqidalqskiqfleeamtnanKE 763
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907081397 849 EVRLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRKIMVQQIAMEREELERAkSALLEEQKSVMNKCGEERRRL 923
Cdd:pfam15921 764 KHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKA-SLQFAECQDIIQRQEQESVRL 837
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
830-1070 |
1.20e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 1.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 830 QQRDMEEERNRLQEVIGKMEvRLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRKIMVQQIAMEREELERAKSALLEEQ 909
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIA-ELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 910 KSVMNKCGEERRRLAAewaeyftqqklskeraereaeraMHADSQREGTIISLTKEQAELTVRACE-LRAKEEKLLAERE 988
Cdd:COG4942 97 AELEAQKEELAELLRA-----------------------LYRLGRQPPLALLLSPEDFLDAVRRLQyLKYLAPARREQAE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 989 ALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEAQQMQNEQQGRLQVVQRQQEWLRQQEQRVH 1068
Cdd:COG4942 154 ELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
|
..
gi 1907081397 1069 QE 1070
Cdd:COG4942 234 AE 235
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
873-1083 |
1.45e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 1.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 873 AESAQRTLEEQRKIMvQQIAMEREELERAKSALleeqksvmnkcgEERRRLAAEWAEYFTQQKLSKERAEREaeramhad 952
Cdd:COG4913 240 AHEALEDAREQIELL-EPIRELAERYAAARERL------------AELEYLRAALRLWFAQRRLELLEAELE-------- 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 953 sQREGTIISLTKEQAELTVRACELRAKEEKLLAER--------EALERERQELRLEKDRLHKASLRLQARAQEVEHMSKV 1024
Cdd:COG4913 299 -ELRAELARLEAELERLEARLDALREELDELEAQIrgnggdrlEQLEREIERLERELEERERRRARLEALLAALGLPLPA 377
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907081397 1025 ASKKYEEGEQALQEAQQMQNEQQGRLQVVQ----RQQEWLRQQEQRVHQEHLSLAQQRLQLDR 1083
Cdd:COG4913 378 SAEEFAALRAEAAALLEALEEELEALEEALaeaeAALRDLRRELRELEAEIASLERRKSNIPA 440
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
707-926 |
1.60e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 1.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 707 QARAELVAQHQRQMAMAEQERDQEVARLRELQQAsilemRKDHEHQLQRLkmlkDQEIDAVTsatshtRSLNGIIEQMEK 786
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKE-----EKALLKQLAAL----ERRIAALA------RRIRALEQELAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 787 FSSSLNTLSSRVEAshlttsQQRELGIRQQD--EQLRALQeRLGRQQ---------------------RDMEEERNRLQE 843
Cdd:COG4942 81 LEAELAELEKEIAE------LRAELEAQKEElaELLRALY-RLGRQPplalllspedfldavrrlqylKYLAPARREQAE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 844 VIGKMEVRLSEQSRLLEQERWRVAAEKTKAESAQRTLEE---QRKIMVQQIAMEREELERAKSALLEEQKSVMNKCGEER 920
Cdd:COG4942 154 ELRADLAELAALRAELEAERAELEALLAELEEERAALEAlkaERQKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
|
....*.
gi 1907081397 921 RRLAAE 926
Cdd:COG4942 234 AEAAAA 239
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
603-875 |
2.55e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 2.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 603 KQLLAAQG---QLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRSRikvLETS 679
Cdd:COG4913 678 ERLDASSDdlaALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAL---LEER 754
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 680 YQQ--REEQLRREKEVLSAQHASYCREAEQARAELV---AQHQRQMAMAEQERDQEVARLRELQ------QASILEmrkD 748
Cdd:COG4913 755 FAAalGDAVERELRENLEERIDALRARLNRAEEELEramRAFNREWPAETADLDADLESLPEYLalldrlEEDGLP---E 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 749 HEHQLQRLkmLKDQEIDAVTS-ATSHTRSLNGIIEQMEKfsssLNTLSSRVEAS-----HLTTSQQRELGIRQQDEQLRA 822
Cdd:COG4913 832 YEERFKEL--LNENSIEFVADlLSKLRRAIREIKERIDP----LNDSLKRIPFGpgrylRLEARPRPDPEVREFRQELRA 905
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 823 LQERLGRQQRDMEEER-NRLQEVIGKM-----EVRLSEQSRLLEQERWRV-AAEKTKAES 875
Cdd:COG4913 906 VTSGASLFDEELSEARfAALKRLIERLrseeeESDRRWRARVLDVRNHLEfDAEEIDRED 965
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
601-1080 |
3.14e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 45.33 E-value: 3.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 601 YQKQLLAAQGQLQSSTAQLQvELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRSRIKVLeTSY 680
Cdd:COG3096 506 SQQALAQRLQQLRAQLAELE-QRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQR-SEL 583
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 681 QQREEQLRREKEVLSAQhASYCREAEQARAELVAQ------------HQRQMAM-----AEQERDQEVARLRELQQAsIL 743
Cdd:COG3096 584 RQQLEQLRARIKELAAR-APAWLAAQDALERLREQsgealadsqevtAAMQQLLerereATVERDELAARKQALESQ-IE 661
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 744 EMRKDHEHQLQRLKMLKDQ-------EI-DAVT-------SA----TSH---TRSLNGIIEQMEKFSSSLNTL------- 794
Cdd:COG3096 662 RLSQPGGAEDPRLLALAERlggvllsEIyDDVTledapyfSAlygpARHaivVPDLSAVKEQLAGLEDCPEDLyliegdp 741
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 795 SSRVEASHLTTSQQRELGIRQQDEQLR-------ALQERLGRQQR--DMEEERNRLQEVIGKMEVRLSEQSRLLEQERWR 865
Cdd:COG3096 742 DSFDDSVFDAEELEDAVVVKLSDRQWRysrfpevPLFGRAAREKRleELRAERDELAEQYAKASFDVQKLQRLHQAFSQF 821
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 866 VAAEKTKA-----ESAQRTLEEQRKIMVQQIAMEREELERAKSAL--LEEQKSVMNKCGEERRRLAAEwaeyftqqklsk 938
Cdd:COG3096 822 VGGHLAVAfapdpEAELAALRQRRSELERELAQHRAQEQQLRQQLdqLKEQLQLLNKLLPQANLLADE------------ 889
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 939 eraereaeraMHADSQREGTIISLTKEQAELTVRACELRAKE-EKLLA-------EREALERERQELRLEKDRLHKASLR 1010
Cdd:COG3096 890 ----------TLADRLEELREELDAAQEAQAFIQQHGKALAQlEPLVAvlqsdpeQFEQLQADYLQAKEQQRRLKQQIFA 959
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 1011 LQARAQEVEHMSkvaskkYEEGEQALQEAQQMQNEQQGRLQVVQRQQEWLRQQeQRVHQEHLSLAQQRLQ 1080
Cdd:COG3096 960 LSEVVQRRPHFS------YEDAVGLLGENSDLNEKLRARLEQAEEARREAREQ-LRQAQAQYSQYNQVLA 1022
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
618-874 |
3.27e-04 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 44.84 E-value: 3.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 618 QLQVELLQSQTKLSELEAQVRKLELERAQhrMLLESLQQRHQADLELIE---DAHR---SRIKVLETSYQQREEQLRREK 691
Cdd:pfam06160 234 NVDKEIQQLEEQLEENLALLENLELDEAE--EALEEIEERIDQLYDLLEkevDAKKyveKNLPEIEDYLEHAEEQNKELK 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 692 EVLSAQHASYCREAEQAraELVAQHQRQMAMAEQERDQEVARLRELQQASIlEMRKDHEHQLQRLKMLKDQEIDAVTSat 771
Cdd:pfam06160 312 EELERVQQSYTLNENEL--ERVRGLEKQLEELEKRYDEIVERLEEKEVAYS-ELQEELEEILEQLEEIEEEQEEFKES-- 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 772 shtrsLNGII-------EQMEKFSSSLNTLSSRVEASHLT-TSQQRELGIRQQDEQLRALQERLGRQQRDMEEERNRLQE 843
Cdd:pfam06160 387 -----LQSLRkdelearEKLDEFKLELREIKRLVEKSNLPgLPESYLDYFFDVSDEIEDLADELNEVPLNMDEVNRLLDE 461
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1907081397 844 VIGKMEV------RLSEQSRLLEQ-----ERWR-----VAAEKTKAE 874
Cdd:pfam06160 462 AQDDVDTlyekteELIDNATLAEQliqyaNRYRssnpeVAEALTEAE 508
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
636-1095 |
3.33e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.95 E-value: 3.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 636 QVRKLELERAQHRMLLESLQQRHqADLELIEDAHRSRIKVLETSYQQREEQLRREKEVLSAQHA------------SYCR 703
Cdd:PRK04863 287 EALELRRELYTSRRQLAAEQYRL-VEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKieryqadleeleERLE 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 704 EAEQARA---ELVAQHQRQMAMAEQERDQEVARLRELQQASILEMRKDHEHQlqrlkmlkdQEIDAVTSAtshtRSLNGI 780
Cdd:PRK04863 366 EQNEVVEeadEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQ---------QAVQALERA----KQLCGL 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 781 IeqmekfSSSLNTLSSRVEAshLTTSQQrelgirQQDEQLRALQERLgrqqrDMEEERNRLQEVIGKMEVRLS-EQSRll 859
Cdd:PRK04863 433 P------DLTADNAEDWLEE--FQAKEQ------EATEELLSLEQKL-----SVAQAAHSQFEQAYQLVRKIAgEVSR-- 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 860 eQERWRVAAEKTKAESAQRTLEEQrkimVQQIAMEREELERAksalLEEQKSVmnkcgeerRRLAAEWaeyftQQKLSKE 939
Cdd:PRK04863 492 -SEAWDVARELLRRLREQRHLAEQ----LQQLRMRLSELEQR----LRQQQRA--------ERLLAEF-----CKRLGKN 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 940 RAEREAERAMHAdsQREGTIISLTKEQAELTVRACELRAKEEKLLAEREALERERQELRLEKDRLhkaslrlqaraqeve 1019
Cdd:PRK04863 550 LDDEDELEQLQE--ELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDAL--------------- 612
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907081397 1020 hmskvaSKKYEEGEQALQEAQQMQNeqqgrlqvvQRQQEWLRQQEQRVHQEHLSLAQQRL--QLDRVRQEVPASLPGL 1095
Cdd:PRK04863 613 ------ARLREQSGEEFEDSQDVTE---------YMQQLLERERELTVERDELAARKQALdeEIERLSQPGGSEDPRL 675
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
602-885 |
3.47e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.96 E-value: 3.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 602 QKQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQAD------LELIEDAHRSRIKV 675
Cdd:pfam02463 719 AEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEerekteKLKVEEEKEEKLKA 798
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 676 LETSYQ--------QREEQLRREKEVLSAQHASYCREAEQARAELVAQHQRQMAMAEQERDQEVARLRELQQASILEMRK 747
Cdd:pfam02463 799 QEEELRaleeelkeEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEE 878
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 748 DHE-------HQLQRLKMLKDQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEASHLTTSQQRELGIRQQDEQL 820
Cdd:pfam02463 879 LEEqklkdelESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEE 958
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907081397 821 RalqERLGRQQRDMEEERNRLQEVIgKMEVRLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRK 885
Cdd:pfam02463 959 E---ERNKRLLLAKEELGKVNLMAI-EEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRL 1019
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
798-911 |
3.90e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.38 E-value: 3.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 798 VEASHLTTSQQRELGIRQQDEQLRALQERLGRQQRDMEEERNRLQEVIGKMEVRLSEQSRLLEQERWRVAAEKTKAESAQ 877
Cdd:PRK12704 44 LEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQ 123
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1907081397 878 RTLEEQRKIMVQQIAMEREELER--------AKSALLEEQKS 911
Cdd:PRK12704 124 QELEKKEEELEELIEEQLQELERisgltaeeAKEILLEKVEE 165
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
609-1039 |
4.99e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 44.65 E-value: 4.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 609 QGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAhRSRIKVLETSYQQREEQLR 688
Cdd:TIGR00606 690 EAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPEL-RNKLQKVNRDIQRLKNDIE 768
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 689 REKEVLSAQHASYcREAEQARAELVAQHQRQMAMAEQER--DQEVARLRELQ-QASILEMRKDHEHqlqrlkmlKDQEID 765
Cdd:TIGR00606 769 EQETLLGTIMPEE-ESAKVCLTDVTIMERFQMELKDVERkiAQQAAKLQGSDlDRTVQQVNQEKQE--------KQHELD 839
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 766 AVTSATSHTRSL-NGIIEQMEKFSSSLNTLSSrvEASHLTTSQQRELGIRQQDEQLRALQERLGRQQRDMEEERNRLQEV 844
Cdd:TIGR00606 840 TVVSKIELNRKLiQDQQEQIQHLKSKTNELKS--EKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETF 917
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 845 IGKmevrlseqsrLLEQERWRVAAEKTKAESAQRTLEEQRKiMVQQIAMEREELERAKSALLEEQKSvmnkcgEERRRLA 924
Cdd:TIGR00606 918 LEK----------DQQEKEELISSKETSNKKAQDKVNDIKE-KVKNIHGYMKDIENKIQDGKDDYLK------QKETELN 980
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 925 AEWAEYFTQQKLSKERAEREAERAMHADSQREGTiiSLTKEQAELTVRACELRAKEEKL------------LAEREALER 992
Cdd:TIGR00606 981 TVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQE--RWLQDNLTLRKRENELKEVEEELkqhlkemgqmqvLQMKQEHQK 1058
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 1907081397 993 ERQELRLEKDRLHKASLRLQARAQEVEHM-SKVASKKYEEGEQALQEA 1039
Cdd:TIGR00606 1059 LEENIDLIKRNHVLALGRQKGYEKEIKHFkKELREPQFRDAEEKYREM 1106
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
681-1020 |
5.09e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.56 E-value: 5.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 681 QQREEQLRREKEVLSAQHASY------CREAEQARAELVAQHqrqMAMAEQERDQEVARLRELQQASILEMRKDHEHQLQ 754
Cdd:COG3096 784 EKRLEELRAERDELAEQYAKAsfdvqkLQRLHQAFSQFVGGH---LAVAFAPDPEAELAALRQRRSELERELAQHRAQEQ 860
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 755 RLKmlkdqeiDAVTSATSHTRSLNGIIEQMEKFSSslNTLSSRVEA--SHLTTSQQRELGIRQQDEQLRALQERLGRQQR 832
Cdd:COG3096 861 QLR-------QQLDQLKEQLQLLNKLLPQANLLAD--ETLADRLEElrEELDAAQEAQAFIQQHGKALAQLEPLVAVLQS 931
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 833 DMEEERNRLQEVigkmeVRLSEQSRLLEQERW---RVAAEKT--KAESAQRTLEEQRKiMVQQIameREELERAksallE 907
Cdd:COG3096 932 DPEQFEQLQADY-----LQAKEQQRRLKQQIFalsEVVQRRPhfSYEDAVGLLGENSD-LNEKL---RARLEQA-----E 997
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 908 EQKSvmnKCGEERRRLAAEWAEYftQQKLSKERAEREAERAMHADSQRegtiisltkEQAELTVRA---CELRAKEEK-- 982
Cdd:COG3096 998 EARR---EAREQLRQAQAQYSQY--NQVLASLKSSRDAKQQTLQELEQ---------ELEELGVQAdaeAEERARIRRde 1063
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 1907081397 983 -------LLAEREALERERQELRLEKDRLHKASLRL-----QARAQEVEH 1020
Cdd:COG3096 1064 lheelsqNRSRRSQLEKQLTRCEAEMDSLQKRLRKAerdykQEREQVVQA 1113
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
602-1027 |
6.24e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.01 E-value: 6.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 602 QKQLLAAQGQLQSSTAQLQVEL----LQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRSRikvle 677
Cdd:pfam01576 210 KRKLEGESTDLQEQIAELQAQIaelrAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESER----- 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 678 tSYQQREEQLRREKEvlsaqhasycREAEQARAELvaQHQRQMAMAEQE----RDQEVARLRElqqaSILEMRKDHEHQL 753
Cdd:pfam01576 285 -AARNKAEKQRRDLG----------EELEALKTEL--EDTLDTTAAQQElrskREQEVTELKK----ALEEETRSHEAQL 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 754 QRLKMLKDQEIDAVTSATSHTRSLNGiieQMEKFSSSLNTLSSRVEASHLTTSQQR---ELGIRQQDEQLRALQERLGrq 830
Cdd:pfam01576 348 QEMRQKHTQALEELTEQLEQAKRNKA---NLEKAKQALESENAELQAELRTLQQAKqdsEHKRKKLEGQLQELQARLS-- 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 831 qrDMEEERNRLQEVIGKMEVRLSEQSRLLE--------------------QERWRVAAEKTKAE----SAQRTLEEQRKI 886
Cdd:pfam01576 423 --ESERQRAELAEKLSKLQSELESVSSLLNeaegkniklskdvsslesqlQDTQELLQEETRQKlnlsTRLRQLEDERNS 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 887 MVQQIAME---REELERAKSAL----------LEEQKSVMNKCGEERRRLAAEwAEYFTQQ---------KLSKERAERE 944
Cdd:pfam01576 501 LQEQLEEEeeaKRNVERQLSTLqaqlsdmkkkLEEDAGTLEALEEGKKRLQRE-LEALTQQleekaaaydKLEKTKNRLQ 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 945 AE---RAMHADSQREgTIISLTKEQAELTV-----RACELRAKEEKLLAEREALERERQELRL----EKDRLHKASLRLQ 1012
Cdd:pfam01576 580 QElddLLVDLDHQRQ-LVSNLEKKQKKFDQmlaeeKAISARYAEERDRAEAEAREKETRALSLaralEEALEAKEELERT 658
|
490
....*....|....*
gi 1907081397 1013 ARAQEVEHMSKVASK 1027
Cdd:pfam01576 659 NKQLRAEMEDLVSSK 673
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
46-290 |
6.52e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.16 E-value: 6.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 46 KPAEPASHAKDTASSPQWQASKAKFLPKDSVEG--LAGADAEASSVSDADPQvflQNMKDLDSMDDDL--------FGRM 115
Cdd:PHA03247 267 RAPETARGATGPPPPPEAAAPNGAAAPPDGVWGaaLAGAPLALPAPPDPPPP---APAGDAEEEDDEDgamevvspLPRP 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 116 KSHQPSGKGAAKGPGKEGPSNHKpagTLTANEKgytMPTKKPPPSSSKTGLQYKKFSFEdfedplAGLLSDEEEETATKL 195
Cdd:PHA03247 344 RQHYPLGFPKRRRPTWTPPSSLE---DLSAGRH---HPKRASLPTRKRRSARHAATPFA------RGPGGDDQTRPAAPV 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 196 PAveRKPAPKSPGAAAGQ--GPSVPLTPG-----DTPIRKKELLFDEGDDIMTTLGFEDSPKAERKKTGDQEGPLPARSK 268
Cdd:PHA03247 412 PA--SVPTPAPTPVPASAppPPATPLPSAepgsdDGPAPPPERQPPAPATEPAPDDPDDATRKALDALRERRPPEPPGAD 489
|
250 260
....*....|....*....|....*..
gi 1907081397 269 LDELLGR-----GTAAKLLTRPGTGER 290
Cdd:PHA03247 490 LAELLGRhpdtaGTVVRLAAREAAIAR 516
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
612-1080 |
7.81e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.79 E-value: 7.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 612 LQSSTAQLQVELLQS-QTKLSELEaqvRKLELERAQHRMLLESLQQRHQ-----ADLELIEDAHRSRIKVLET---SYQQ 682
Cdd:PRK04863 503 RRLREQRHLAEQLQQlRMRLSELE---QRLRQQQRAERLLAEFCKRLGKnlddeDELEQLQEELEARLESLSEsvsEARE 579
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 683 REEQLRREKEVLSAQHASYCREAEQARA-----------------------ELVAQHQRQMAMAEQERDQEVARLRELQ- 738
Cdd:PRK04863 580 RRMALRQQLEQLQARIQRLAARAPAWLAaqdalarlreqsgeefedsqdvtEYMQQLLERERELTVERDELAARKQALDe 659
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 739 QASILEMRKDHEhqLQRLKMLKDQ-------------------EIDAVTSATSH---TRSLNGIIEQMEKFSSSLNTL-- 794
Cdd:PRK04863 660 EIERLSQPGGSE--DPRLNALAERfggvllseiyddvsledapYFSALYGPARHaivVPDLSDAAEQLAGLEDCPEDLyl 737
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 795 ---------SSRVEASHLttsqQRELGIRQQDEQLRALQ----ERLGRQQRD-----MEEERNRLQEVIGKMEVRLSEQS 856
Cdd:PRK04863 738 iegdpdsfdDSVFSVEEL----EKAVVVKIADRQWRYSRfpevPLFGRAAREkrieqLRAEREELAERYATLSFDVQKLQ 813
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 857 RLLEQERWRVAAEKTKA-----ESAQRTLEEQRKIMVQQIAMEREELERAKSAL--LEEQKSVMNKCGEERRRLAAEwae 929
Cdd:PRK04863 814 RLHQAFSRFIGSHLAVAfeadpEAELRQLNRRRVELERALADHESQEQQQRSQLeqAKEGLSALNRLLPRLNLLADE--- 890
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 930 yFTQQKLSKERAEREAERAMHADSQREGTIISLTKEQAELtvraceLRAKEEKLLAEREALERERQELRLekdrlhkasL 1009
Cdd:PRK04863 891 -TLADRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSV------LQSDPEQFEQLKQDYQQAQQTQRD---------A 954
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907081397 1010 RLQARAQeVEHMSKVASKKYEEGEQALQEAQQMQNEQQGRLQVVQRQQEWLRQQeQRVHQEHLSLAQQRLQ 1080
Cdd:PRK04863 955 KQQAFAL-TEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQ-LRQAQAQLAQYNQVLA 1023
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
601-860 |
8.08e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.80 E-value: 8.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 601 YQKQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRML--LESLQQRHQADLELIE---DAHRSRIKV 675
Cdd:TIGR00618 633 HLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALqkMQSEKEQLTYWKEMLAqcqTLLRELETH 712
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 676 LETSYQQREEQlrrekevlsaQHASYCREAEQARAELVAQHQRQMAMAEQE---RDQEVARLRELQQASILEMRKDHEHQ 752
Cdd:TIGR00618 713 IEEYDREFNEI----------ENASSSLGSDLAAREDALNQSLKELMHQARtvlKARTEAHFNNNEEVTAALQTGAELSH 782
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 753 LQRLKMLKDQEIDAVTSATSHTRSlngiiEQMEKFSSSLNTLSSRVEashltTSQQRELGIRQQDEQLRALQERLGRQQR 832
Cdd:TIGR00618 783 LAAEIQFFNRLREEDTHLLKTLEA-----EIGQEIPSDEDILNLQCE-----TLVQEEEQFLSRLEEKSATLGEITHQLL 852
|
250 260
....*....|....*....|....*...
gi 1907081397 833 DMEEERNRLQEVIgKMEVRLSEQSRLLE 860
Cdd:TIGR00618 853 KYEECSKQLAQLT-QEQAKIIQLSDKLN 879
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
825-1086 |
8.18e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.98 E-value: 8.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 825 ERLGRQQRDME---EERNRLQEVIGKmEVRLSEQSRLLEQERwrvAAEKTKAESAQRTLEEQRKIMVQQIAMEREELERA 901
Cdd:PTZ00121 1070 EGLKPSYKDFDfdaKEDNRADEATEE-AFGKAEEAKKTETGK---AEEARKAEEAKKKAEDARKAEEARKAEDARKAEEA 1145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 902 KSALLEEQKSVMNKCGEERRRLAAEWAEyftqqklskeraereaeRAMHADSQRegtiisltkeQAELTVRACELRAKEE 981
Cdd:PTZ00121 1146 RKAEDAKRVEIARKAEDARKAEEARKAE-----------------DAKKAEAAR----------KAEEVRKAEELRKAED 1198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 982 KLLAerEALERERQELRLEKDRLHKASLRLQA--RAQEVEhmskvasKKYEEGEQALQE--AQQMQNEQQGRLQVVQRQQ 1057
Cdd:PTZ00121 1199 ARKA--EAARKAEEERKAEEARKAEDAKKAEAvkKAEEAK-------KDAEEAKKAEEErnNEEIRKFEEARMAHFARRQ 1269
|
250 260
....*....|....*....|....*....
gi 1907081397 1058 EWLRQQEQRVHQEhLSLAQQRLQLDRVRQ 1086
Cdd:PTZ00121 1270 AAIKAEEARKADE-LKKAEEKKKADEAKK 1297
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
604-1008 |
9.12e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.79 E-value: 9.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 604 QLLAAQGQLQSSTAQLQVE---LLQSQTKLSELEAQVRKLELE----RAQHRMLLESLQQ-----RHQADLELIEDAHRS 671
Cdd:COG3096 286 RALELRRELFGARRQLAEEqyrLVEMARELEELSARESDLEQDyqaaSDHLNLVQTALRQqekieRYQEDLEELTERLEE 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 672 RIKVLET---SYQQREEQLRR-EKEV--LSAQHASYCR--EAEQARAElvaqhQRQMAMAEQERDQEVARLRELQQASIl 743
Cdd:COG3096 366 QEEVVEEaaeQLAEAEARLEAaEEEVdsLKSQLADYQQalDVQQTRAI-----QYQQAVQALEKARALCGLPDLTPENA- 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 744 emrKDHEHQLQRlkmlKDQEIDAVTSATSHTRSL-NGIIEQMEKFSSSLNTLSSRVEAShlTTSQQrelgIRQQDEQLRA 822
Cdd:COG3096 440 ---EDYLAAFRA----KEQQATEEVLELEQKLSVaDAARRQFEKAYELVCKIAGEVERS--QAWQT----ARELLRRYRS 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 823 LQERLGRQQrdmeeernrlqevigKMEVRLSEQSRLLEQERwrvaaektkaeSAQRTLEEQRKIMVQQI--AMEREELER 900
Cdd:COG3096 507 QQALAQRLQ---------------QLRAQLAELEQRLRQQQ-----------NAERLLEEFCQRIGQQLdaAEELEELLA 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 901 AKSALLEEQKSVMNKCGEERRRLAAEWAEYFTQQKLSKERAEREAERAMHADSQREGTIISLTKEQAELTVRACELRaKE 980
Cdd:COG3096 561 ELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALERLREQSGEALADSQEVTAAMQQLLE-RE 639
|
410 420
....*....|....*....|....*...
gi 1907081397 981 EKLLAEREALERERQELRLEKDRLHKAS 1008
Cdd:COG3096 640 REATVERDELAARKQALESQIERLSQPG 667
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
602-1045 |
9.58e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.47 E-value: 9.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 602 QKQLLAAQGQLQSSTAQL---QVELLQSQTKLSELEAQVRKLELEraqhrmlLESLQQRHQADLeliedahrsrIKVLET 678
Cdd:TIGR04523 252 QTQLNQLKDEQNKIKKQLsekQKELEQNNKKIKELEKQLNQLKSE-------ISDLNNQKEQDW----------NKELKS 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 679 SYQQREEQLRREKEVLSaqhasycrEAEQARAELvaqhQRQMAMAEQERDQevarlRELQQASILEMRKDHEHQLQRLKM 758
Cdd:TIGR04523 315 ELKNQEKKLEEIQNQIS--------QNNKIISQL----NEQISQLKKELTN-----SESENSEKQRELEEKQNEIEKLKK 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 759 LKDQEIDAVTSATSHTRSLNGIIEQMEKfssslntlssrveashltTSQQRELGIRQQDEQLRALQErlgrQQRDMEEER 838
Cdd:TIGR04523 378 ENQSYKQEIKNLESQINDLESKIQNQEK------------------LNQQKDEQIKKLQQEKELLEK----EIERLKETI 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 839 NRLQEVIgkmevrlseqSRLLEQErwrvAAEKTKAESAQRTLEEQRkimvQQIAMEREELERAKSALLEEQKSVMNKCGE 918
Cdd:TIGR04523 436 IKNNSEI----------KDLTNQD----SVKELIIKNLDNTRESLE----TQLKVLSRSINKIKQNLEQKQKELKSKEKE 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 919 errrlaaewAEYFTQQKlskeraereaeramhadSQREGTIISLTKEQAELTVracelraKEEKLLAEREALERERQEL- 997
Cdd:TIGR04523 498 ---------LKKLNEEK-----------------KELEEKVKDLTKKISSLKE-------KIEKLESEKKEKESKISDLe 544
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 1907081397 998 --------RLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEAQQMQNE 1045
Cdd:TIGR04523 545 delnkddfELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKD 600
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
602-884 |
1.03e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 42.75 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 602 QKQLLAAQGQLQSSTAQ---LQVELLQSQTKLSELEAQVRKLelerAQHRMLLESLQQRHQA-----------------D 661
Cdd:pfam19220 124 ERQLAAETEQNRALEEEnkaLREEAQAAEKALQRAEGELATA----RERLALLEQENRRLQAlseeqaaelaeltrrlaE 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 662 LELIEDAHRSRIKVLETSYQqrEEQLRREKevLSAQHASycrEAEQARAELVAQHQR------QMAMAEQERDQEVARLR 735
Cdd:pfam19220 200 LETQLDATRARLRALEGQLA--AEQAERER--AEAQLEE---AVEAHRAERASLRMKlealtaRAAATEQLLAEARNQLR 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 736 ELQQASILEMRKDHEHQLQRLKmlKDQEIDAVTSATSHTRSLNGIIEQMEkfssslNTLSSRVEAshLTTS-QQRELGIR 814
Cdd:pfam19220 273 DRDEAIRAAERRLKEASIERDT--LERRLAGLEADLERRTQQFQEMQRAR------AELEERAEM--LTKAlAAKDAALE 342
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 815 QQDEQLRALQERLGRQQRDMEEERNRLQEVIGkmevRLSEQsrlLEQERwrvaAEKTKAESAQRTLEEQR 884
Cdd:pfam19220 343 RAEERIASLSDRIAELTKRFEVERAALEQANR----RLKEE---LQRER----AERALAQGALEIARESR 401
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
601-938 |
1.04e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 43.53 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 601 YQKQLLAAQGQLQ------SSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRM----LLESLQQRHQADLELIEDAHR 670
Cdd:COG5022 873 SAQRVELAERQLQelkidvKSISSLKLVNLELESEIIELKKSLSSDLIENLEFKTeliaRLKKLLNNIDLEEGPSIEYVK 952
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 671 SRIKVletSYQQREEQLRREKEVLSA---QHASYCREAEQARAELVaQHQRQMAMAEQERDQ---EVARLRELQQASI-- 742
Cdd:COG5022 953 LPELN---KLHEVESKLKETSEEYEDllkKSTILVREGNKANSELK-NFKKELAELSKQYGAlqeSTKQLKELPVEVAel 1028
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 743 --LEMRKDHEH----------QLQRLKMLKDQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEASHLTTSQQRE 810
Cdd:COG5022 1029 qsASKIISSEStelsilkplqKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNL 1108
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 811 LGIRQQDEQLRALQERLGRQQRdMEEERNRLQEVIGKMEVRLSEQSRLLEQERWRVAAEktkaesaQRTLEEQRKIMVQQ 890
Cdd:COG5022 1109 VKPANVLQFIVAQMIKLNLLQE-ISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLE-------ALPSPPPFAALSEK 1180
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 1907081397 891 IAMEREELERAKSALLEEQKSVMNKCGEERRRLAAEWAEYFTQQKLSK 938
Cdd:COG5022 1181 RLYQSALYDEKSKLSSSEVNDLKNELIALFSKIFSGWPRGDKLKKLIS 1228
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
823-1088 |
1.08e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 1.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 823 LQERLGRQQRDMEEERNRLQEvigKMEVRLSEQSRLLEqerwrVAAEKTKAESAQRTLEE-QRKIMVQQIAMEREELERA 901
Cdd:COG3206 105 LDEDPLGEEASREAAIERLRK---NLTVEPVKGSNVIE-----ISYTSPDPELAAAVANAlAEAYLEQNLELRREEARKA 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 902 kSALLEEQksvMNKCGEERRRLAAEWAEYFTQQKLSKERAEREAERAMHADSQREgtIISLTKEQAELTVRACELRAKEE 981
Cdd:COG3206 177 -LEFLEEQ---LPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQ--LAEARAELAEAEARLAALRAQLG 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 982 ----------------KLLAEREALERERQELRLEKDRLHKASLRLQARAQEVEhmskvaskkyeegEQALQEAQQMQNE 1045
Cdd:COG3206 251 sgpdalpellqspviqQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALR-------------AQLQQEAQRILAS 317
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1907081397 1046 QQGRLQVVQRQQEWLRQQEQRVHQEHLSLAQQRLQLDRVRQEV 1088
Cdd:COG3206 318 LEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREV 360
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
602-1093 |
1.10e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 43.20 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 602 QKQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRSRIKVLETSYQ 681
Cdd:pfam07111 244 RQELLDTMQHLQEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPSDSLEPEFPKKCRSLLNRWREKVFALMVQLK 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 682 QREEQLRREKEVLSAQHASYCREA-EQARAELVAQHQRQMAMAEQERDQEVARLRELQQASILEMRKdheHQLQRLKMLK 760
Cdd:pfam07111 324 AQDLEHRDSVKQLRGQVAELQEQVtSQSQEQAILQRALQDKAAEVEVERMSAKGLQMELSRAQEARR---RQQQQTASAE 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 761 DQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRV-----EASHLTTSQQRELGIRQQDEQLRALQERLGRQQRDME 835
Cdd:pfam07111 401 EQLKFVVNAMSSTQIWLETTMTRVEQAVARIPSLSNRLsyavrKVHTIKGLMARKVALAQLRQESCPPPPPAPPVDADLS 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 836 EERNRLQEVIGKMEVRLSEQSRLLEQErwrVAAEKTKAESAQRTLEEqrkiMVQQIameREELERAKSAL--LEEQKSVM 913
Cdd:pfam07111 481 LELEQLREERNRLDAELQLSAHLIQQE---VGRAREQGEAERQQLSE----VAQQL---EQELQRAQESLasVGQQLEVA 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 914 NKCGEERRRLAAEWAEYFTQQKlskeraereaeramhadsqrEGTIISLTKEQAELTVRACELRAKEEKLLAEREaleRE 993
Cdd:pfam07111 551 RQGQQESTEEAASLRQELTQQQ--------------------EIYGQALQEKVAEVETRLREQLSDTKRRLNEAR---RE 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 994 RQELRLEKDRLHKASLRLQARAQEVEHMSKVASKkyEEGEQALQEAQQMQNEQQGRLQVVQRQQEWLRQQEQRVHQEHLS 1073
Cdd:pfam07111 608 QAKAVVSLRQIQHRATQEKERNQELRRLQDEARK--EEGQRLARRVQELERDKNLMLATLQQEGLLSRYKQQRLLAVLPS 685
|
490 500
....*....|....*....|
gi 1907081397 1074 LAQQRLQLDRVRQEVPASLP 1093
Cdd:pfam07111 686 GLDKKSVVSSPRPECSASAP 705
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
801-1036 |
1.26e-03 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 42.76 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 801 SHLTTSQQ----RELGIRQQDEQLRALQERLGRQQ-------RDMEEERNRLQEV----------IGKMEVRLSEQSRLL 859
Cdd:PRK11637 47 DQLKSIQQdiaaKEKSVRQQQQQRASLLAQLKKQEeaisqasRKLRETQNTLNQLnkqidelnasIAKLEQQQAAQERLL 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 860 EQERwrVAAEKT----------KAESAQRT---------LEEQRKIMVQQIAMEREELERAKSALLEEQksvmnkcGEER 920
Cdd:PRK11637 127 AAQL--DAAFRQgehtglqlilSGEESQRGerilayfgyLNQARQETIAELKQTREELAAQKAELEEKQ-------SQQK 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 921 RRLAAEWAEyftQQKLSKeraereaeramhADSQREGTII----SLTKEQAELTvracELRAKEEKLL-----AEREALE 991
Cdd:PRK11637 198 TLLYEQQAQ---QQKLEQ------------ARNERKKTLTglesSLQKDQQQLS----ELRANESRLRdsiarAEREAKA 258
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1907081397 992 RERQELRlEKDRLhkaslrlqaRAQEVEHMSKVASKKYEEGEQAL 1036
Cdd:PRK11637 259 RAEREAR-EAARV---------RDKQKQAKRKGSTYKPTESERSL 293
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
593-905 |
1.66e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 42.76 E-value: 1.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 593 QSLLPGSGYQKQLLAAQGQLQSSTAQLQVELLQSQTKLSE--LEAQVRKLELERA-----QHRML------LESLQQRHQ 659
Cdd:COG5022 800 QPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEfsLKAEVLIQKFGRSlkakkRFSLLkketiyLQSAQRVEL 879
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 660 ADLELIE--DAHRSRIKVLETSYQQREEQLRREKEVLSAqhasycreaEQARAELVAQHQRQMAMAEQERDQEVARLREL 737
Cdd:COG5022 880 AERQLQElkIDVKSISSLKLVNLELESEIIELKKSLSSD---------LIENLEFKTELIARLKKLLNNIDLEEGPSIEY 950
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 738 QQASILEmrKDHEhQLQRLKMLKDQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEASHLTTSQQRELgirqqD 817
Cdd:COG5022 951 VKLPELN--KLHE-VESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKEL-----P 1022
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 818 EQLRALQ--ERLGRQQRDMEEERNRLQEVIGKMEV---RLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRKIMVQQIA 892
Cdd:COG5022 1023 VEVAELQsaSKIISSESTELSILKPLQKLKGLLLLennQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLE 1102
|
330
....*....|...
gi 1907081397 893 MEREELERAKSAL 905
Cdd:COG5022 1103 VTNRNLVKPANVL 1115
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
965-1092 |
1.66e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 1.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 965 EQAELTVRACELRAKEEKLLAEREALERERQELRLEKDRLHKASLRLQARAQEVEHmsKVASKKYEEGEQALQEAQQMQN 1044
Cdd:COG4913 275 EYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEA--QIRGNGGDRLEQLEREIERLER 352
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1907081397 1045 EQQGRLQVVQRQQEWLRQQEQRVHQEHLSLAQQRLQLDRVRQEVPASL 1092
Cdd:COG4913 353 ELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEEL 400
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
725-891 |
2.03e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 2.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 725 QERDQEVARLRElQQASILEMRKDHEHQLQRLKMLKDQEIDAVTSATSHTRSLNGIIEQ----MEKFSSSLNTLSSRVEA 800
Cdd:COG1579 13 QELDSELDRLEH-RLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEvearIKKYEEQLGNVRNNKEY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 801 SHLttsqQRELgirqqdEQLRALQERLGRQQRDMEEERNRLQEVIGKMEVRLSEQSRLLEQERWRVAAEKTKAESAQRTL 880
Cdd:COG1579 92 EAL----QKEI------ESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEEL 161
|
170
....*....|.
gi 1907081397 881 EEQRKIMVQQI 891
Cdd:COG1579 162 EAEREELAAKI 172
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
682-1039 |
2.03e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 2.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 682 QREEQLRREKEVLSAQHASYCREAE------QARAELVAQHqrqMAMAEQErDQEVArLRELQQASILEMRK--DHEHQL 753
Cdd:PRK04863 786 KRIEQLRAEREELAERYATLSFDVQklqrlhQAFSRFIGSH---LAVAFEA-DPEAE-LRQLNRRRVELERAlaDHESQE 860
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 754 QRLKmlkdqeiDAVTSATSHTRSLNGIIEQMEKFSSslNTLSSRVEASH--LTTSQQRELGIRQQDEQLRAL-------- 823
Cdd:PRK04863 861 QQQR-------SQLEQAKEGLSALNRLLPRLNLLAD--ETLADRVEEIReqLDEAEEAKRFVQQHGNALAQLepivsvlq 931
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 824 --QERLGRQQRDMEEERNRLQevigkmevRLSEQSRLLEQERWRVAAekTKAESAQRTLEEQRKiMVQQIameREELERA 901
Cdd:PRK04863 932 sdPEQFEQLKQDYQQAQQTQR--------DAKQQAFALTEVVQRRAH--FSYEDAAEMLAKNSD-LNEKL---RQRLEQA 997
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 902 KSALLEeqksvmnkCGEERRRLAAEWAEYftQQKLSKERAEREAERAMHADSQRegtiisltkEQAELTVRACElrAKEE 981
Cdd:PRK04863 998 EQERTR--------AREQLRQAQAQLAQY--NQVLASLKSSYDAKRQMLQELKQ---------ELQDLGVPADS--GAEE 1056
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 1907081397 982 KLLAEREALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEA 1039
Cdd:PRK04863 1057 RARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNA 1114
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
622-1058 |
2.11e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.47 E-value: 2.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 622 ELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRSRIKvLETSYQQREEQLRrEKEVLSAQHASY 701
Cdd:pfam01576 13 ELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRAR-LAARKQELEEILH-ELESRLEEEEER 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 702 CREAEQARAELvaqhQRQMAMAEQERDQEVARLRELQ------QASILEMRKD---HEHQLQRLKMLKDQEIDAVTSATS 772
Cdd:pfam01576 91 SQQLQNEKKKM----QQHIQDLEEQLDEEEAARQKLQlekvttEAKIKKLEEDillLEDQNSKLSKERKLLEERISEFTS 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 773 HtrslngIIEQMEKfSSSLNTLSSRVEA--SHLTTSQQRELGIRQQDEQLRalqERLGRQQRDMEEERNRLQEVIGKMEV 850
Cdd:pfam01576 167 N------LAEEEEK-AKSLSKLKNKHEAmiSDLEERLKKEEKGRQELEKAK---RKLEGESTDLQEQIAELQAQIAELRA 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 851 RLSEQSRLLEQERWRVAAEKTKAESAQRTLEE-QRKIMVQQIAMEREELERAKSallEEQKSVMnkcGEERRRLAAEWAE 929
Cdd:pfam01576 237 QLAKKEEELQAALARLEEETAQKNNALKKIRElEAQISELQEDLESERAARNKA---EKQRRDL---GEELEALKTELED 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 930 YF----TQQKLSkeraereaeramhadSQREGTIISLTKEQAELT----VRACELRAKEEKLLAE-----------REAL 990
Cdd:pfam01576 311 TLdttaAQQELR---------------SKREQEVTELKKALEEETrsheAQLQEMRQKHTQALEElteqleqakrnKANL 375
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907081397 991 ERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEAQQMQNEQQGRLQVVQRQQE 1058
Cdd:pfam01576 376 EKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELE 443
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
621-892 |
2.27e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.25 E-value: 2.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 621 VELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQAdleliEDAHRSRIKVL-ETSYQQREEQLRREKEvlsaqha 699
Cdd:PRK04863 837 AELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSA-----LNRLLPRLNLLaDETLADRVEEIREQLD------- 904
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 700 sycrEAEQARAeLVAQHQRQMAMAEqerdQEVARLRELQQAsILEMRKDHEHQLQRLKMLKDQ-----EIDAVTSATSHT 774
Cdd:PRK04863 905 ----EAEEAKR-FVQQHGNALAQLE----PIVSVLQSDPEQ-FEQLKQDYQQAQQTQRDAKQQafaltEVVQRRAHFSYE 974
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 775 RSLNGIIEqmekfSSSLN-TLSSRVEASHLTTSQQRElGIRQQDEQL--------------RALQERLGRQQRDME---- 835
Cdd:PRK04863 975 DAAEMLAK-----NSDLNeKLRQRLEQAEQERTRARE-QLRQAQAQLaqynqvlaslkssyDAKRQMLQELKQELQdlgv 1048
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 836 ------EERNRLQEviGKMEVRLSE-QSRL--LEQERWRVAAE----KTKAESAQRTLEEQRKIMVQQIA 892
Cdd:PRK04863 1049 padsgaEERARARR--DELHARLSAnRSRRnqLEKQLTFCEAEmdnlTKKLRKLERDYHEMREQVVNAKA 1116
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
666-905 |
2.48e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.13 E-value: 2.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 666 EDAHRSRIKVLETSYQ-QREEQLRREKEV--LSAQHASYCREAEQARAELVAQHQRQMAMAEQERDQEVA--RLRELQQA 740
Cdd:pfam12128 599 EEELRERLDKAEEALQsAREKQAAAEEQLvqANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKknKALAERKD 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 741 SILEMRKDHEHQLQRLK-----MLKDQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEASH------LTTSQQR 809
Cdd:pfam12128 679 SANERLNSLEAQLKQLDkkhqaWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAkaelkaLETWYKR 758
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 810 ELGIRQQDEQLRAlqerlgrqqrDMEEERNRLQEVIGKMEVRLSE--QSRLLEQERW-----RVAAEKTKAESAQRTLEE 882
Cdd:pfam12128 759 DLASLGVDPDVIA----------KLKREIRTLERKIERIAVRRQEvlRYFDWYQETWlqrrpRLATQLSNIERAISELQQ 828
|
250 260
....*....|....*....|...
gi 1907081397 883 QRKIMVQQIAMEREELERAKSAL 905
Cdd:pfam12128 829 QLARLIADTKLRRAKLEMERKAS 851
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
603-734 |
2.68e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 2.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 603 KQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQA-----DLELIE---DAHRSRIK 674
Cdd:COG1579 27 KELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNvrnnkEYEALQkeiESLKRRIS 106
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907081397 675 VLETSYQQ---REEQLRREKEVLSAQHASYCREAEQARAEL---VAQHQRQMAMAEQERDQEVARL 734
Cdd:COG1579 107 DLEDEILElmeRIEELEEELAELEAELAELEAELEEKKAELdeeLAELEAELEELEAEREELAAKI 172
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
807-991 |
3.05e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 3.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 807 QQRELGIRQQDEQLRALQERLgrqqRDMEEERNRLQEVIGKMEVRLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRKI 886
Cdd:COG1579 13 QELDSELDRLEHRLKELPAEL----AELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNN 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 887 -MVQQIAMEREELERAKSALLEEQKSVMNKCGEERRRLAAewaeyfTQQKLSKERAEreaeramhadsqregtiisLTKE 965
Cdd:COG1579 89 kEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAE------LEAELAELEAE-------------------LEEK 143
|
170 180
....*....|....*....|....*.
gi 1907081397 966 QAELTVRACELRAKEEKLLAEREALE 991
Cdd:COG1579 144 KAELDEELAELEAELEELEAEREELA 169
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
617-736 |
3.17e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.61 E-value: 3.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 617 AQLQVELLQSQTKLSELEAQVRKLELERAQhrmLLESLQQRHQADLELIEDahrsRIKVLETSYQQREEQLRREKEVLSA 696
Cdd:COG0542 400 ARVRMEIDSKPEELDELERRLEQLEIEKEA---LKKEQDEASFERLAELRD----ELAELEEELEALKARWEAEKELIEE 472
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1907081397 697 QHAsyCREAEQARAELVAQHQRQMAMAEQERDQEVARLRE 736
Cdd:COG0542 473 IQE--LKEELEQRYGKIPELEKELAELEEELAELAPLLRE 510
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
120-458 |
3.52e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 41.70 E-value: 3.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 120 PSGKGAAKGPGKEGPSNHKPAGTLTAneKGYTMPTKKPPPSSSKTGLQYKKFSFEDFEDPLAGllsdeEEETATKLPAVe 199
Cdd:PHA03307 66 EPPTGPPPGPGTEAPANESRSTPTWS--LSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASP-----PPSPAPDLSEM- 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 200 RKPAPKSPGAAAGQGPSVPLTPGDTPI-----RKKELLFDEGDDIMTTLGfedSPKAERKKTGDQEGPLPARSKLDELLG 274
Cdd:PHA03307 138 LRPVGSPGPPPAASPPAAGASPAAVASdaassRQAALPLSSPEETARAPS---SPPAEPPPSTPPAAASPRPPRRSSPIS 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 275 rgtAAKLLTRPGTGERREFQLDKKYqkmggEESVPARDKEDSWDDETLTfgaYKPTVASSEGRQSRRQSVRFLGEGGPDP 354
Cdd:PHA03307 215 ---ASASSPAPAPGRSAADDAGASS-----SDSSSSESSGCGWGPENEC---PLPRPAPITLPTRIWEASGWNGPSSRPG 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 355 KGESLGFKQSSPPASSPIHPRKGGADwlGLKDNDLDLLSPSPVQKAQQEDSPMTPS-LLPPTNQPSAPEPQSAPTGLPSA 433
Cdd:PHA03307 284 PASSSSSPRERSPSPSPSSPGSGPAP--SSPRASSSSSSSRESSSSSTSSSSESSRgAAVSPGPSPSRSPSPSRPPPPAD 361
|
330 340
....*....|....*....|....*
gi 1907081397 434 AKPPAKGARPSLKASQASSPKASEE 458
Cdd:PHA03307 362 PSSPRKRPRPSRAPSSPAASAGRPT 386
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
849-1087 |
3.55e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.65 E-value: 3.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 849 EVRLSEQSRLLEQERWRvaaekTKAESAQRTLEEQRKImvqqiamerEELERAKSALLEEQKSVMnkcgEERRRLAAEwa 928
Cdd:pfam17380 286 ERQQQEKFEKMEQERLR-----QEKEEKAREVERRRKL---------EEAEKARQAEMDRQAAIY----AEQERMAME-- 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 929 eyftqqklskerAEREAERAMHADSQREGTIIsltkEQAELTVRACELRAKEEKLLAEREALERERQELRLEKdrlhKAS 1008
Cdd:pfam17380 346 ------------RERELERIRQEERKRELERI----RQEEIAMEISRMRELERLQMERQQKNERVRQELEAAR----KVK 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 1009 LRLQARAQEVEHMSKVASKKYEEGEQALQEAQQMQNEQQGRLQVVQRQQEWLRQQE-QRVHQEHLSLAQQRLQLDRVRQE 1087
Cdd:pfam17380 406 ILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQvERLRQQEEERKRKKLELEKEKRD 485
|
|
| PLN03086 |
PLN03086 |
PRLI-interacting factor K; Provisional |
975-1063 |
4.41e-03 |
|
PRLI-interacting factor K; Provisional
Pssm-ID: 178635 [Multi-domain] Cd Length: 567 Bit Score: 41.01 E-value: 4.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 975 ELRAKEEKLlaEREALER-ERQELRLEKDRLHKASLRLQARAQEVEHMskvaSKKYEEGEQALQEAQQMQ-NEQQGRLQV 1052
Cdd:PLN03086 4 ELRRAREKL--EREQRERkQRAKLKLERERKAKEEAAKQREAIEAAQR----SRRLDAIEAQIKADQQMQeSLQAGRGIV 77
|
90
....*....|.
gi 1907081397 1053 VQRQQEWLRQQ 1063
Cdd:PLN03086 78 FSRIFEAVSFQ 88
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
958-1087 |
4.48e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.92 E-value: 4.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 958 TIISLTKEQAELTVRACELRA---KEEKLLAEREALERER----QELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYE 1030
Cdd:PRK12704 31 AKIKEAEEEAKRILEEAKKEAeaiKKEALLEAKEEIHKLRnefeKELRERRNELQKLEKRLLQKEENLDRKLELLEKREE 110
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1907081397 1031 EGEQALQEAQQMQNEQQGRLQVVQRQQEWLRQQEQRVHQEHLSLAQQRLqLDRVRQE 1087
Cdd:PRK12704 111 ELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEIL-LEKVEEE 166
|
|
| MAP7 |
pfam05672 |
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is ... |
826-910 |
5.16e-03 |
|
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent.
Pssm-ID: 461709 [Multi-domain] Cd Length: 153 Bit Score: 38.87 E-value: 5.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 826 RLGRQQRDMEEERNRLQEviGKMEVRLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRKIMVQQIAMEREELERAKSAL 905
Cdd:pfam05672 21 RQAREQREREEQERLEKE--EEERLRKEELRRRAEEERARREEEARRLEEERRREEEERQRKAEEEAEEREQREQEEQER 98
|
....*
gi 1907081397 906 LEEQK 910
Cdd:pfam05672 99 LQKQK 103
|
|
| UPF0242 |
pfam06785 |
Uncharacterized protein family (UPF0242) N-terminus; This region includes an N-terminal ... |
975-1068 |
6.75e-03 |
|
Uncharacterized protein family (UPF0242) N-terminus; This region includes an N-terminal transmembrane region and a C-terminal coiled-coil.
Pssm-ID: 429117 [Multi-domain] Cd Length: 194 Bit Score: 39.03 E-value: 6.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 975 ELRAKEEKLLAEREALERERQELRLEKDRLhkaSLRLQARAQEVEHMSKVASKKYEEGEQALQEAQQMQNEQQGrlqVVQ 1054
Cdd:pfam06785 94 ELQSEEERLEEELSQKEEELRRLTEENQQL---QIQLQQISQDFAEFRLESEEQLAEKQLLINEYQQTIEEQRS---VLE 167
|
90
....*....|....
gi 1907081397 1055 RQQEWLRQQEQRVH 1068
Cdd:pfam06785 168 KRQDQIENLESKVR 181
|
|
| PRK10927 |
PRK10927 |
cell division protein FtsN; |
1040-1128 |
9.61e-03 |
|
cell division protein FtsN;
Pssm-ID: 236797 [Multi-domain] Cd Length: 319 Bit Score: 39.66 E-value: 9.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907081397 1040 QQMQNEQQGRLQVVQRQQEWlrQQEQRVHQEHLSLAQQRLQLDRVRQEVPASLPGLPPRVQGPAASSRDAVQAPASSSPQ 1119
Cdd:PRK10927 143 EQTPEQRQQTLQRQRQAQQL--AEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQQPYQDLLQTPAHTTAQ 220
|
....*....
gi 1907081397 1120 CSQPAAAQV 1128
Cdd:PRK10927 221 SKPQQAAPV 229
|
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