|
Name |
Accession |
Description |
Interval |
E-value |
| PACT_coil_coil |
pfam10495 |
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil ... |
2318-2396 |
1.05e-26 |
|
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil region close to the C-terminus of centrosomal proteins that is directly responsible for recruiting AKAP-450 and pericentrin to the centrosome. Hence the suggested name for this region is a PACT domain (pericentrin-AKAP-450 centrosomal targeting). This domain is also present at the C-terminus of coiled-coil proteins from Drosophila and S. pombe, and that from the Drosophila protein is sufficient for targeting to the centrosome in mammalian cells. The function of these proteins is unknown but they seem good candidates for having a centrosomal or spindle pole body location. The final 22 residues of this domain in AKAP-450 appear specifically to be a calmodulin-binding domain indicating that this member at least is likely to contribute to centrosome assembly.
Pssm-ID: 463115 Cd Length: 77 Bit Score: 105.37 E-value: 1.05e-26
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907073928 2318 YLRAESFRKALIYQKKYLLLLIGGFQDSEQETLSMIAHLGVFPSKADKKitmSRPFTKFRTAVRVVIAVLRLRFLVKKW 2396
Cdd:pfam10495 2 LLREESFRKDLAYQKKYLLLLLGGYQACNKADLRLLAQMGVTPPDDRPS---RKPRRKLKSAALAVIAIARMKRLAREW 77
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
378-996 |
7.93e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.59 E-value: 7.93e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 378 QELQASQDQVAQVRDKVFLLNRELEECRAELEQLQQRRERENQEGTTLicmlRADLELAQGEGKALRDALRRLLDLFGDT 457
Cdd:COG1196 239 AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEA----QAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 458 LKAAVTLKSRISERAGLLLDHEDAADTSDARLAAAALGDMWSDEGLLEIDRTLPEgaetssvceisshvcesffispent 537
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE------------------------- 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 538 ldceqpIRRVYQSLSTAVEGLLEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALE 617
Cdd:COG1196 370 ------AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 618 LHTAKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEksvlwnqketltnEAKEREAGSPV 697
Cdd:COG1196 444 LEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEA-------------EADYEGFLEGV 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 698 LPAHKDTALQEEVESLTRVQWESRKQSEKDRATLLSQMRVLESELEDQLVQHR--------GCAQLAEEVATLKQQLAAL 769
Cdd:COG1196 511 KAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIeylkaakaGRATFLPLDKIRARAALAA 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 770 DKHLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAARPRPPGPRDSQCVQLDEEVELLQEKLREKLDGFNELVIKK 849
Cdd:COG1196 591 ALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRREL 670
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 850 DFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQENMGDLLLTTVSRSGLDEAgcpMLPQG 929
Cdd:COG1196 671 LAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELL---EEEEL 747
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907073928 930 SSSRGPEAQPDVTERALLQHENEVVHRRNSE--------IDELKSLIENLQENQRQLQkDKAEEIEQLHEVIEKL 996
Cdd:COG1196 748 LEEEALEELPEPPDLEELERELERLEREIEAlgpvnllaIEEYEELEERYDFLSEQRE-DLEEARETLEEAIEEI 821
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
595-1183 |
8.41e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.59 E-value: 8.41e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 595 QKQQELLERLREESAAKDRLALELHTAKglLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEK 674
Cdd:COG1196 206 ERQAEKAERYRELKEELKELEAELLLLK--LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELEL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 675 SVLWNQKETLTNEAKEREAGSpvlpAHKDTALQEEVESLTRVQWEsRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQ 754
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDI----ARLEERRRELEERLEELEEE-LAELEEELEELEEELEELEEELEEAEEELEEAEA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 755 LAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAARprppgprdsQCVQLDEEVELLQEK 834
Cdd:COG1196 359 ELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLE---------RLERLEEELEELEEA 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 835 LREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQENMGD--LLLTT 912
Cdd:COG1196 430 LAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADyeGFLEG 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 913 VSRSGLDEAGCPMLPQGSSSRGPEAQPDVTERALLqhENEVVHRRNSEIDELKSLIENLQEN-------------QRQLQ 979
Cdd:COG1196 510 VKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAAL--AAALQNIVVEDDEVAAAAIEYLKAAkagratflpldkiRARAA 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 980 KDKAEEIEQLHEVIEKLQSELSLMGPKVHEVSDPQAGSLHSELACLRGEGLGGQALRSELQAAQAAKEVF--GQLLADQA 1057
Cdd:COG1196 588 LAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSagGSLTGGSR 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1058 HGHSQALEALQQRLQDAEEVAARHLAELEHcVALREAEVEAMASQIQEFAATLKAKEAIIEQRDLEIDAvnkwkvshsle 1137
Cdd:COG1196 668 RELLAALLEAEAELEELAERLAEEELELEE-ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAERE----------- 735
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 1907073928 1138 leAILLALAHFRHALEQQTCATPDEPPELRQLRVQCARLSHQLQVL 1183
Cdd:COG1196 736 --ELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
548-1131 |
2.11e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.97 E-value: 2.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 548 YQSLSTAVEGLLEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEG 627
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 628 FKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEksvLWNQKETLTNEAKEREagspvlpahkdtALQ 707
Cdd:COG1196 314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAE---LAEAEEALLEAEAELA------------EAE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 708 EEVESLTRVQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAER 787
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 788 EHEREEFQQEIQRLEGQLRQAARPRPPgprdsqcVQLDEEVELLQEKLREKLDGFNELVIKKDFADQQ--------LLIQ 859
Cdd:COG1196 459 EALLELLAELLEEAALLEAALAELLEE-------LAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLrglagavaVLIG 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 860 EEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKeilkqenmgdlLLTTVSRSGLDEAgcpmlpQGSSSRGPEAQP 939
Cdd:COG1196 532 VEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAA-----------KAGRATFLPLDKI------RARAALAAALAR 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 940 DVTERALLQHENEVVHRRNSEIDELKSLIENLQENQRQLQKDKAEEIEQLHEVIEKLQSELSLMGPkvhevsdpqagslh 1019
Cdd:COG1196 595 GAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGG-------------- 660
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1020 selaclRGEGLGGQALRSELQAAQAAKEVFGQLLADQAHGHSQALEALQQRLQDAEEVAARHLAELEHCVALREAEVEAM 1099
Cdd:COG1196 661 ------SLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAER 734
|
570 580 590
....*....|....*....|....*....|..
gi 1907073928 1100 ASQIQEFAATLKAKEAIIEQRDLEIDAVNKWK 1131
Cdd:COG1196 735 EELLEELLEEEELLEEEALEELPEPPDLEELE 766
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
549-1072 |
2.63e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.58 E-value: 2.63e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 549 QSLSTAVEGLLEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQEL-------LERLREESAAKDRLALELHTA 621
Cdd:COG1196 249 EELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLeqdiarlEERRRELEERLEELEEELAEL 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 622 KGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEREAgspvlpah 701
Cdd:COG1196 329 EEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAA-------- 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 702 KDTALQEEVESLTRVQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRQFMD 781
Cdd:COG1196 401 QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 782 DQAAEREHEREEF---QQEIQRLEGQLRQAARPR--PPGPRDSQCVQLDEEVELLQEKLREKLDGFNELVI--------- 847
Cdd:COG1196 481 ELLEELAEAAARLlllLEAEADYEGFLEGVKAALllAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIvveddevaa 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 848 ------KKDFADQQLLIQEEEIKRLEETNASIQRQMVQ---------LQEELEKQKKSMEELKEKEILKQENMGDLLLTT 912
Cdd:COG1196 561 aaieylKAAKAGRATFLPLDKIRARAALAAALARGAIGaavdlvasdLREADARYYVLGDTLLGRTLVAARLEAALRRAV 640
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 913 VSRSGLDEAGCPM---LPQGSSSRGPEAQPDVTERALLQHENEVVHRRNSEIDELKSLIENLQENQRQLQKDKAEEIEQL 989
Cdd:COG1196 641 TLAGRLREVTLEGeggSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEE 720
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 990 HEVIEKLQSELSLMGPKVHEVSDPQAGSLHSELAcLRGEGLGGQALRSELQAAQAAKEVFGQ--LLADQAHghsqalEAL 1067
Cdd:COG1196 721 LEEEALEEQLEAEREELLEELLEEEELLEEEALE-ELPEPPDLEELERELERLEREIEALGPvnLLAIEEY------EEL 793
|
....*
gi 1907073928 1068 QQRLQ 1072
Cdd:COG1196 794 EERYD 798
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
4-896 |
1.30e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.39 E-value: 1.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 4 EFQKKEAEWELSREELKREAEERLAsmfLELREKAESEKLSII-SRFEHRESSMRHLQ---DQQAAQILDLERSLMEQQG 79
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEE---LTAELQELEEKLEELrLEVSELEEEIEELQkelYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 80 HLRQLEQELTRddllpcsqcGQEPAMAQEEKNGALLREKEDCALQLLMAQNRFLEERKEIMEKFAKEQDA--FLRDAQEK 157
Cdd:TIGR02168 310 RLANLERQLEE---------LEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELesRLEELEEQ 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 158 HNhelqllQQGHQQQLLALRMELETKHRSELTEQLASSESRRQALLETHVAELQVKHNAEISALEKRhLSNLDELESCYV 237
Cdd:TIGR02168 381 LE------TLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAE-LEELEEELEELQ 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 238 ADVQTIRDEHQQALELLRAELEEQLQKKESCHRemLTQELENLKRQHAEELQSVRDSLRMEMSAQHIENGKGPAADLQGA 317
Cdd:TIGR02168 454 EELERLEEALEELREELEEAEQALDAAERELAQ--LQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISV 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 318 HQQQDPAMALHNEGHL---LVEDGDAVLRSVDAeglLHQAgpqELGDAHTVEmqksqAELAKPQELQASQDQVAQVRDKV 394
Cdd:TIGR02168 532 DEGYEAAIEAALGGRLqavVVENLNAAKKAIAF---LKQN---ELGRVTFLP-----LDSIKGTEIQGNDREILKNIEGF 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 395 FLLNRELEECRAELEQLQQrrereNQEGTTLICmlrADLELAQGEGKALRDALRrlldlfgdtlkaAVTLKsriseragl 474
Cdd:TIGR02168 601 LGVAKDLVKFDPKLRKALS-----YLLGGVLVV---DDLDNALELAKKLRPGYR------------IVTLD--------- 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 475 lldhedaadtsdarlaaaalGDMWSDEGLLeidrtLPEGAETSSvceisshvcesffispeNTLDCEQPIRRvyqsLSTA 554
Cdd:TIGR02168 652 --------------------GDLVRPGGVI-----TGGSAKTNS-----------------SILERRREIEE----LEEK 685
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 555 VEGLLEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVD 634
Cdd:TIGR02168 686 IEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEE 765
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 635 LQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEREAGSPVLPAHKDtALQEEVESLT 714
Cdd:TIGR02168 766 LEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA-ATERRLEDLE 844
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 715 RvQWESRKQSEKDRATLLSQMRVLESELEDQLVqhrgcaQLAEEVATLKQQLAAldkhLRSQRQFMDDQAAEREHEREEF 794
Cdd:TIGR02168 845 E-QIEELSEDIESLAAEIEELEELIEELESELE------ALLNERASLEEALAL----LRSELEELSEELRELESKRSEL 913
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 795 QQEIQRLEGQLRQAARprppgprdsQCVQLDEEVELLQEKLREK----LDGFNELVIKKDFADQQLliqEEEIKRLEETN 870
Cdd:TIGR02168 914 RRELEELREKLAQLEL---------RLEGLEVRIDNLQERLSEEysltLEEAEALENKIEDDEEEA---RRRLKRLENKI 981
|
890 900
....*....|....*....|....*.
gi 1907073928 871 ASIQRQMVQLQEELEKQKKSMEELKE 896
Cdd:TIGR02168 982 KELGPVNLAAIEEYEELKERYDFLTA 1007
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
18-690 |
1.36e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.27 E-value: 1.36e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 18 ELKREAEERLASMFLELREKAESEKLSIISRFEHRESSMRHLQDQQAaqildlerslmEQQGHLRQLEQELTRDDLlpcs 97
Cdd:COG1196 217 ELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELA-----------ELEAELEELRLELEELEL---- 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 98 qcgqepamaQEEKNGALLREKEDCALQLLMAQNRFLEERKEIMEKFAKEQDAFLRDAQEKHNHELQLLQQGHQQQLLALR 177
Cdd:COG1196 282 ---------ELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 178 MELETKHRSELTEQLASSESRRQALLETHVAELQVKHNAEISALEKR-HLSNLDELESCYVADVQTIRDEHQQALELLRA 256
Cdd:COG1196 353 LEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAaQLEELEEAEEALLERLERLEEELEELEEALAE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 257 ELEEQLQKKEScHREMLTQELENLKRQHAEELQSVRDSLRMEMSAQHIENGKGPAADLQGAHQQQDPAMALHNEGhllvE 336
Cdd:COG1196 433 LEEEEEEEEEA-LEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGF----L 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 337 DGDAVLRSVDAEGLLHQAGPQELGDAHTVEMQKSQAELAKPQELQASQDQVAQVRDKvFLLNRELEecRAELEQLQQRRE 416
Cdd:COG1196 508 EGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIE-YLKAAKAG--RATFLPLDKIRA 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 417 RENQEgttlicmlRADLELAQGEGKALRDALRRLLDLFGDTLKAAVTLKSRISERAgllldheDAADTSDARLAAAALgd 496
Cdd:COG1196 585 RAALA--------AALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARL-------EAALRRAVTLAGRLR-- 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 497 mwsdEGLLEIDRTLPEGAETSsvceisshvcesffispentldceqpiRRVYQSLSTAVEGLLEMALDSSKQLEEARQLh 576
Cdd:COG1196 648 ----EVTLEGEGGSAGGSLTG---------------------------GSRRELLAALLEAEAELEELAERLAEEELEL- 695
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 577 rcvEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDL 656
Cdd:COG1196 696 ---EEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERL 772
|
650 660 670 680
....*....|....*....|....*....|....*....|.
gi 1907073928 657 RKQLQQ-------AARELLTLKEEKSVLWNQKETLTNEAKE 690
Cdd:COG1196 773 EREIEAlgpvnllAIEEYEELEERYDFLSEQREDLEEARET 813
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
177-999 |
3.42e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.85 E-value: 3.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 177 RMELETKHRSELTEQLASSESRRQALlETHVAELQVK---HNAEISALEKRhlsnLDELESCYVADVQTIRD-EHQQALE 252
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEEL-TAELQELEEKleeLRLEVSELEEE----IEELQKELYALANEISRlEQQKQIL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 253 LLRAELEEQLQKKESCHREMLTQELENLKRQHA------EELQSVRDSLRMEMSAQH--IENGKGPAADLQGAHQQQDPA 324
Cdd:TIGR02168 308 RERLANLERQLEELEAQLEELESKLDELAEELAeleeklEELKEELESLEAELEELEaeLEELESRLEELEEQLETLRSK 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 325 MALHNEGhllVEDGDAVLRSVDAEGllhqagpQELGDAHTVEMQKSQAELAKPQE--LQASQDQVAQVRDKVFLLNRELE 402
Cdd:TIGR02168 388 VAQLELQ---IASLNNEIERLEARL-------ERLEDRRERLQQEIEELLKKLEEaeLKELQAELEELEEELEELQEELE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 403 ECRAELEQLQQRRERENQEgttlICMLRADLELAQGEGKALRDALRRLLDlFGDTLKAAVTLKSRISERAGLLLDHEDAA 482
Cdd:TIGR02168 458 RLEEALEELREELEEAEQA----LDAAERELAQLQARLDSLERLQENLEG-FSEGVKALLKNQSGLSGILGVLSELISVD 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 483 DTSDARLAAAALGDMWS------DEGLLEIDRTLPEGAETSSVCEISSHVCESFFISPENTLDCEQPIRRVYQSL---ST 553
Cdd:TIGR02168 533 EGYEAAIEAALGGRLQAvvvenlNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLvkfDP 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 554 AVEGLLEMALDSSkqleearqlhRCVERefrhrneeMAQAMQKQQELLERLREESAAKDRLalelhTAKGLLEG------ 627
Cdd:TIGR02168 613 KLRKALSYLLGGV----------LVVDD--------LDNALELAKKLRPGYRIVTLDGDLV-----RPGGVITGgsaktn 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 628 -----FKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSVLwNQKETLTNEAKEREAGSPVLPAHK 702
Cdd:TIGR02168 670 ssileRRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL-SRQISALRKDLARLEAEVEQLEER 748
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 703 DTALQEEVESLTRVQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRQFMDD 782
Cdd:TIGR02168 749 IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES 828
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 783 QAAEREHEreefQQEIQRLEGQLRQAArprppgprdSQCVQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEE 862
Cdd:TIGR02168 829 LERRIAAT----ERRLEDLEEQIEELS---------EDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSE 895
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 863 IKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEIlKQENMGDLLLTTVSRSGLDEAGcpmlPQGSSSRGPEAQPDVT 942
Cdd:TIGR02168 896 LEELSEELRELESKRSELRRELEELREKLAQLELRLE-GLEVRIDNLQERLSEEYSLTLE----EAEALENKIEDDEEEA 970
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 943 ERALLQHENEVVHRRN---SEIDELKSLIENLQENQRQlQKDKAEEIEQLHEVIEKLQSE 999
Cdd:TIGR02168 971 RRRLKRLENKIKELGPvnlAAIEEYEELKERYDFLTAQ-KEDLTEAKETLEEAIEEIDRE 1029
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
567-1218 |
3.89e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.85 E-value: 3.89e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 567 KQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESE 646
Cdd:TIGR02168 288 KELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 647 QQLILELEDLRKQLQQAARELLTLKEEKSVLWNQ-----------KETLTNEAKEREAGSPVLPAHKDTALQEEVESLTR 715
Cdd:TIGR02168 368 EELESRLEELEEQLETLRSKVAQLELQIASLNNEierlearlerlEDRRERLQQEIEELLKKLEEAELKELQAELEELEE 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 716 VQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEfq 795
Cdd:TIGR02168 448 ELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVL-- 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 796 QEIQRLEGQLRQAARPRPPGPRDSQCVQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQR 875
Cdd:TIGR02168 526 SELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAK 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 876 QMVQLQEELEKQKKSM-------EELKEK-EILKQENMGDLLLT----TVSRSG-------------------LDEAGCP 924
Cdd:TIGR02168 606 DLVKFDPKLRKALSYLlggvlvvDDLDNAlELAKKLRPGYRIVTldgdLVRPGGvitggsaktnssilerrreIEELEEK 685
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 925 MLPQGSSSRGPEAQPDVTERALLQHENEV-------------VHRRNSEIDELKSLIENLQENQRQLQK---DKAEEIEQ 988
Cdd:TIGR02168 686 IEELEEKIAELEKALAELRKELEELEEELeqlrkeleelsrqISALRKDLARLEAEVEQLEERIAQLSKeltELEAEIEE 765
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 989 LHEVIEKLQSELSLMGPKVHEVSDPQAG-------------SLHSELACLRGEGLGGQALRSELQAAQAAKEVFGQLLAD 1055
Cdd:TIGR02168 766 LEERLEEAEEELAEAEAEIEELEAQIEQlkeelkalrealdELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEE 845
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1056 QAHGHSQALEALQQRLQDAEEVAARHLAELEHCVALREAEVEAMA---SQIQEFAATLKAKEAIIEQRDLEIDAVNKWKV 1132
Cdd:TIGR02168 846 QIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAllrSELEELSEELRELESKRSELRRELEELREKLA 925
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1133 SHSLELEAILLALAHFRHALEQQTCATPDEPPELRQLRVQCARlshqlqvlyrpflKCRMQLDQHQPHVASIGCANPCAD 1212
Cdd:TIGR02168 926 QLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEE-------------EARRRLKRLENKIKELGPVNLAAI 992
|
....*.
gi 1907073928 1213 DELEQE 1218
Cdd:TIGR02168 993 EEYEEL 998
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
548-1120 |
8.96e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.69 E-value: 8.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 548 YQSLSTAVEGL-LEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRlalELHTAKGLLE 626
Cdd:TIGR02168 215 YKELKAELRELeLALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEE---EIEELQKELY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 627 GFKVEKVDLQEALGKKEESEQQLI-------LELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEREAGSPVLP 699
Cdd:TIGR02168 292 ALANEISRLEQQKQILRERLANLErqleeleAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 700 AHKDtALQEEVESLTRvqweSRKQSEKDRATLLSQMRVLESELEdQLVQHRgcAQLAEEVATLKQQLAALDKH-LRSQRQ 778
Cdd:TIGR02168 372 SRLE-ELEEQLETLRS----KVAQLELQIASLNNEIERLEARLE-RLEDRR--ERLQQEIEELLKKLEEAELKeLQAELE 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 779 FMDDQAAEREHEREEFQQEIQRLEGQLRQAARPRPPGPRDSQcvQLDEEVELLqEKLREKLDGFNELVI-----KKDFAD 853
Cdd:TIGR02168 444 ELEEELEELQEELERLEEALEELREELEEAEQALDAAERELA--QLQARLDSL-ERLQENLEGFSEGVKallknQSGLSG 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 854 -----QQLLIQEEEIKRLEETNASIQRQMVqLQEELEKQKKSMEELKEKEILKqenMGDLLLTTVSRSGLDEAGCPMLPQ 928
Cdd:TIGR02168 521 ilgvlSELISVDEGYEAAIEAALGGRLQAV-VVENLNAAKKAIAFLKQNELGR---VTFLPLDSIKGTEIQGNDREILKN 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 929 GSSSRG---------PEAQPDVTerALLQH--------------------------ENEVVHR----------------- 956
Cdd:TIGR02168 597 IEGFLGvakdlvkfdPKLRKALS--YLLGGvlvvddldnalelakklrpgyrivtlDGDLVRPggvitggsaktnssile 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 957 RNSEIDELKSLIENLQENQRQLQK---DKAEEIEQLHEVIEKLQSELSLMGPKVHEvsdpqagsLHSELACLRGEGLGGQ 1033
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIAELEKalaELRKELEELEEELEQLRKELEELSRQISA--------LRKDLARLEAEVEQLE 746
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1034 ALRSELQAAQAAKEVFGQLLADQAHGHSQALEALQQRLQDAEEVAARHLAELEhcvALREA--EVEAMASQIQEFAATLK 1111
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELK---ALREAldELRAELTLLNEEAANLR 823
|
....*....
gi 1907073928 1112 AKEAIIEQR 1120
Cdd:TIGR02168 824 ERLESLERR 832
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
179-1000 |
2.57e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 2.57e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 179 ELETKHRSELTEQLASSESRRQALLEThVAELQVKHNAEISALEKRHlsnldelescyvADVQTIRDEHQQALELLRAEL 258
Cdd:TIGR02168 221 ELRELELALLVLRLEELREELEELQEE-LKEAEEELEELTAELQELE------------EKLEELRLEVSELEEEIEELQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 259 EEQLQKKEschremLTQELENLKRQHAEELQSVRDSLRmEMSAQHIENGKGPAADLQGAHQQQDPAMALHNEghllvedg 338
Cdd:TIGR02168 288 KELYALAN------EISRLEQQKQILRERLANLERQLE-ELEAQLEELESKLDELAEELAELEEKLEELKEE-------- 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 339 davlrsvdaegllHQAGPQELGDAHTVEMQKSQAELAKPQELQASQDQVAQVRDKVFLLNRELEECRAELEQLQQRRERE 418
Cdd:TIGR02168 353 -------------LESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERL 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 419 NQEGTTLIC-MLRADLELAQGEGKALRDALRRLLDLFGDTLKAAVTLKSRISERAGLLLDHEDAADTSDARLAAAalgdm 497
Cdd:TIGR02168 420 QQEIEELLKkLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL----- 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 498 wsdEGLLEIDRTLPEG--AETSSVCEISSHV-CESFFISPENTLDceqpirrvyQSLSTAVEGLLEMALDSSKQ------ 568
Cdd:TIGR02168 495 ---ERLQENLEGFSEGvkALLKNQSGLSGILgVLSELISVDEGYE---------AAIEAALGGRLQAVVVENLNaakkai 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 569 --LEEARQ-------LHRCVEREFRHRNEEMAQAMQKQQELLERLrEESAAKDRLALElhtakGLLEGFKVEKvDLQEAL 639
Cdd:TIGR02168 563 afLKQNELgrvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDL-VKFDPKLRKALS-----YLLGGVLVVD-DLDNAL 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 640 gkkeeseqqlileleDLRKQLQQAAR------ELLT---------LKEEKSVLWNQKETLTNEAKEREAGSpvlpahKDT 704
Cdd:TIGR02168 636 ---------------ELAKKLRPGYRivtldgDLVRpggvitggsAKTNSSILERRREIEELEEKIEELEE------KIA 694
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 705 ALQEEVESLtRVQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRG-CAQLAEEVATLKQQLAALDKhlrsQRQFMDDQ 783
Cdd:TIGR02168 695 ELEKALAEL-RKELEELEEELEQLRKELEELSRQISALRKDLARLEAeVEQLEERIAQLSKELTELEA----EIEELEER 769
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 784 AAEREHEREEFQQEIQRLEGQLRQAARprppgprdsQCVQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEI 863
Cdd:TIGR02168 770 LEEAEEELAEAEAEIEELEAQIEQLKE---------ELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL 840
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 864 KRLEETNASIQRQMVQLQEELEKQKKSMEELKEK-EILKQENMGDLLLTTVSRSGLDEAgcpmlpqgSSSRGPEAQPDVT 942
Cdd:TIGR02168 841 EDLEEQIEELSEDIESLAAEIEELEELIEELESElEALLNERASLEEALALLRSELEEL--------SEELRELESKRSE 912
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*...
gi 1907073928 943 ERALLQHENEVVHRRNSEIDELKSLIENLQENQRQLQKDKAEEIEQLHEVIEKLQSEL 1000
Cdd:TIGR02168 913 LRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEA 970
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
579-896 |
3.36e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.78 E-value: 3.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 579 VEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQlilELEDLRK 658
Cdd:TIGR02169 668 FSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKE---RLEELEE 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 659 QLQQAARELLTLKEEKSVLWNQKETLTNE-AKEREAgspvLPAHKDTALQEEVESLTRvqwESRKQsEKDRATLLSQMRV 737
Cdd:TIGR02169 745 DLSSLEQEIENVKSELKELEARIEELEEDlHKLEEA----LNDLEARLSHSRIPEIQA---ELSKL-EEEVSRIEARLRE 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 738 LESELEDQlvqHRGCAQLAEEVATLKQQLAALDkhlrSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAarprppgpr 817
Cdd:TIGR02169 817 IEQKLNRL---TLEKEYLEKEIQELQEQRIDLK----EQIKSIEKEIENLNGKKEELEEELEELEAALRDL--------- 880
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 818 DSQCVQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEE------LEKQKKSM 891
Cdd:TIGR02169 881 ESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIpeeelsLEDVQAEL 960
|
....*
gi 1907073928 892 EELKE 896
Cdd:TIGR02169 961 QRVEE 965
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1724-2078 |
4.19e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.26 E-value: 4.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1724 RRQVELLAYKVEQEKCIANELQKTLSKEQETASDVRKRLVVEQNAVQDLKSELHACKQENTSLLESLDKVQQEVLRLRyg 1803
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLE-- 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1804 hvtwsycgtssasAGRAVLDGKEKELKVVLEELESERGKGQALQAQQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNN 1883
Cdd:COG1196 302 -------------QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1884 QLCVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNSQEACARQ 1963
Cdd:COG1196 369 EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1964 ETQVQHALLRKLKAEKTRALELEAMLEKVQKQAAHTQQQLEAQAQErcVELRREKEVSGNLRSAVDALRTHKQELGC-CL 2042
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL--LLLEAEADYEGFLEGVKAALLLAGLRGLAgAV 526
|
330 340 350
....*....|....*....|....*....|....*.
gi 1907073928 2043 QREREKAAWLQAELEQLSARVKEQEARKDARRMERR 2078
Cdd:COG1196 527 AVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAA 562
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
641-1132 |
1.29e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.72 E-value: 1.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 641 KKEESEQQL------ILELEDLRKQLqqaARELLTLKEEKSVLwNQKETLTNEAKEREAgspvlpahkdtalqeeveSLT 714
Cdd:COG1196 173 RKEEAERKLeateenLERLEDILGEL---ERQLEPLERQAEKA-ERYRELKEELKELEA------------------ELL 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 715 RVQWESRkqsEKDRATLLSQMRVLESELEDQLVQHRgcaQLAEEVATLKQQLAALDKHLRSQRQfmddqaaerehEREEF 794
Cdd:COG1196 231 LLKLREL---EAELEELEAELEELEAELEELEAELA---ELEAELEELRLELEELELELEEAQA-----------EEYEL 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 795 QQEIQRLEGQLRQAARPRppGPRDSQCVQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQ 874
Cdd:COG1196 294 LAELARLEQDIARLEERR--RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 875 RQMVQLQEELEKQKKSMEELKEKEILKQENMGDLLLTTVSRSGLDEAgcpMLPQGSSSRGPEAQPDVTERALLQHENEVV 954
Cdd:COG1196 372 AELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLER---LEEELEELEEALAELEEEEEEEEEALEEAA 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 955 HRRNSEIDELKSLIENLQENQRQLQKDKAEEIEQLHEVIEKLQSELSLMGPKVHEVSDPQAGSLHSELACLRG-EGLGGQ 1033
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGlAGAVAV 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1034 ALRSELQAAQAAKEVFGQLLADQAHGHSQALEALQQRLQDA----------EEVAARHLAELEHCVALREAEVEAMASQI 1103
Cdd:COG1196 529 LIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAkagratflplDKIRARAALAAALARGAIGAAVDLVASDL 608
|
490 500
....*....|....*....|....*....
gi 1907073928 1104 QEFAATLKAKEAIIEQRDLEIDAVNKWKV 1132
Cdd:COG1196 609 READARYYVLGDTLLGRTLVAARLEAALR 637
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1594-2120 |
2.93e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.57 E-value: 2.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1594 QALSEVTTDKGEKESLETHLTWSEELLRAIQEVFAREQEKAELQprpygsnLGDYNSLVQRLEKVIQEQgDPQKVQDHLC 1673
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEA-------QAEEYELLAELARLEQDI-ARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1674 LSDRSSLLAEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVELLAYKVEQEKcIANELQKTLSKEQE 1753
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE-ELEELAEELLEALR 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1754 TASDVRKRLVVEQNAVQDLKSELHACKQENTSLLESLDKVQQEVLRLRyghvtwsycgtsSASAGRAVLDGKEKELKVVL 1833
Cdd:COG1196 394 AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE------------EALEEAAEEEAELEEEEEAL 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1834 EELESERGKGQALQAQQEEQQLRYLQREGQSSRALEELKLSLE-------KQLAQNNQLCVALKHERAAKDNLQKELQIE 1906
Cdd:COG1196 462 LELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEgflegvkAALLLAGLRGLAGAVAVLIGVEAAYEAALE 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1907 ASRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNSQEACARQETQVQHALLRKLKAEKTRALELE 1986
Cdd:COG1196 542 AALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDT 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1987 AMLEKVQKQAAHTQQQLEAQAQERCVELRREKEVSGNLRSAVDALRTHKQELGCCLQREREKAAWLQAELEQLSARVKEQ 2066
Cdd:COG1196 622 LLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLA 701
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907073928 2067 EARKDARRMERRSSRADLDKRKWQRDKETLRELEIQRQRD------------------------EHKIEQLQRLVREL 2120
Cdd:COG1196 702 EEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELleeeelleeealeelpeppdleelERELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1865-2125 |
3.60e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.83 E-value: 3.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1865 SRALEELKLSLEKQLAQNNQLCVALKHERAAKDNLQKE---LQIEASRCEALLAQEKGQLSELQKSLEAERSR----SLE 1937
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEEleqLRKELEELSRQISALRKDLARLEAEVEQLEERiaqlSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1938 LSEALQHERLLTEQLSRNSQEACARQETQVQhaLLRKLKAEKTRALELEAMLEKVQKQAAHTQqqleaqaqercVELRRE 2017
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAEIEE--LEAQIEQLKEELKALREALDELRAELTLLN-----------EEAANL 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 2018 KEVSGNLRSAVDALRTHKQELGCCLQREREKAAWLQAELEQLSARVKEQEARKDARRMERRSSRADLDKRKWQRDK--ET 2095
Cdd:TIGR02168 823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEElsEE 902
|
250 260 270
....*....|....*....|....*....|
gi 1907073928 2096 LRELEIQRQRDEHKIEQLQRLVRELRWKEE 2125
Cdd:TIGR02168 903 LRELESKRSELRRELEELREKLAQLELRLE 932
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1-674 |
5.35e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 5.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1 MKEEFQKKEAEWELSREELKREAEErLASMFLELREKAESEKLSIISRFEHREssmrhlqdQQAAQILDLERSLMEQQGH 80
Cdd:TIGR02168 331 KLDELAEELAELEEKLEELKEELES-LEAELEELEAELEELESRLEELEEQLE--------TLRSKVAQLELQIASLNNE 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 81 LRQLEQELTRddllpcsqcgqepamaQEEKNGALLREKEDCALQLLMAQNRFLEERKEIMEKFAKEQDAFLRDAQEKhnh 160
Cdd:TIGR02168 402 IERLEARLER----------------LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEA--- 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 161 elQLLQQGHQQQLLALRMELETKHRsELTEQLASSESRRQALLETHVAELQVKHNAEISALEKRHLSNLDELESCYVADV 240
Cdd:TIGR02168 463 --LEELREELEEAEQALDAAERELA-QLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAI 539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 241 QTIRDEHQQA---LELLRAELEEQLQKKESCHREMLTQelenLKRQHAEELQSVRDSLRMEmsaqhIENGKGPAADLQGA 317
Cdd:TIGR02168 540 EAALGGRLQAvvvENLNAAKKAIAFLKQNELGRVTFLP----LDSIKGTEIQGNDREILKN-----IEGFLGVAKDLVKF 610
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 318 HQQQDPAMALHNEGHLLVEDGDavlrsvDAEGLLHQAGPQELG---DAHTV---------EMQKSQAELAKPQELQASQD 385
Cdd:TIGR02168 611 DPKLRKALSYLLGGVLVVDDLD------NALELAKKLRPGYRIvtlDGDLVrpggvitggSAKTNSSILERRREIEELEE 684
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 386 QVAQVRDKVFLLNRELEECRAELEQLQQRRE---RENQEGTTLICMLRADLELAQGEGKALRDALRRLLDLFGDTLKAAV 462
Cdd:TIGR02168 685 KIEELEEKIAELEKALAELRKELEELEEELEqlrKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIE 764
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 463 TLKSRISERAGLLLDHEDAADTSDARLAAAAlgdmwsdEGLLEIDRTLPEGAETSSVCEISSHVCESFFISPENTL-DCE 541
Cdd:TIGR02168 765 ELEERLEEAEEELAEAEAEIEELEAQIEQLK-------EELKALREALDELRAELTLLNEEAANLRERLESLERRIaATE 837
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 542 QPIRRVYQSLSTAVEGLLEMAL----------DSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAK 611
Cdd:TIGR02168 838 RRLEDLEEQIEELSEDIESLAAeieeleelieELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRREL 917
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907073928 612 DRLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEK 674
Cdd:TIGR02168 918 EELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENK 980
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
595-893 |
2.43e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 2.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 595 QKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQLIL-ELEDLRKQLQQAARELLTLKEE 673
Cdd:TIGR02169 173 EKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLkEKEALERQKEAIERQLASLEEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 674 KSVLWNQKETLTNEAKEREA------------GSPVLPAHKDT--ALQEEVESLTRVQWES----------RKQSEKDRA 729
Cdd:TIGR02169 253 LEKLTEEISELEKRLEEIEQlleelnkkikdlGEEEQLRVKEKigELEAEIASLERSIAEKereledaeerLAKLEAEID 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 730 TLLSQMRVLESELEDQLVQHRGC----AQLAEEVATLKQQLAALDKHLRSQRQFMDD----------QAAEREHEREEFQ 795
Cdd:TIGR02169 333 KLLAEIEELEREIEEERKRRDKLteeyAELKEELEDLRAELEEVDKEFAETRDELKDyrekleklkrEINELKRELDRLQ 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 796 QEIQRLEGQLRQAaRPRPPGPRDSQcVQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQR 875
Cdd:TIGR02169 413 EELQRLSEELADL-NAAIAGIEAKI-NELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490
|
330
....*....|....*...
gi 1907073928 876 QMvqlqEELEKQKKSMEE 893
Cdd:TIGR02169 491 EL----AEAEAQARASEE 504
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
641-1075 |
2.50e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 2.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 641 KKEESEQQLILELEDLrKQLQQAARELltlkeEKsvlwnQKETLTNEAKEreagspvlpAHKDTALQEEVESLTRVQWES 720
Cdd:TIGR02168 173 RRKETERKLERTRENL-DRLEDILNEL-----ER-----QLKSLERQAEK---------AERYKELKAELRELELALLVL 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 721 RKQSEKDRatlLSQMRVLESELEDQlvqhrgCAQLAEEVATLKQQLAALdkhlRSQRQFMDDQAAEREHEREEFQQEIQR 800
Cdd:TIGR02168 233 RLEELREE---LEELQEELKEAEEE------LEELTAELQELEEKLEEL----RLEVSELEEEIEELQKELYALANEISR 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 801 LEGQLRqaarprppgprdsqcvqldeeveLLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQL 880
Cdd:TIGR02168 300 LEQQKQ-----------------------ILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESL 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 881 QEELEKQKKSMEELKEKEILKQENMGDLllttvsrsgldeagcpmlpqgsssrgpeaqpdvtERALLQHENEvVHRRNSE 960
Cdd:TIGR02168 357 EAELEELEAELEELESRLEELEEQLETL----------------------------------RSKVAQLELQ-IASLNNE 401
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 961 IDELKSLIENLQENQRQLQKDKAEEIEQLHEV-IEKLQSELslmgpkvhevsdpqaGSLHSELACLRGEGLGGQALRSEL 1039
Cdd:TIGR02168 402 IERLEARLERLEDRRERLQQEIEELLKKLEEAeLKELQAEL---------------EELEEELEELQEELERLEEALEEL 466
|
410 420 430
....*....|....*....|....*....|....*.
gi 1907073928 1040 QAAQAAKEVFGQLLADQAHGHSQALEALQQRLQDAE 1075
Cdd:TIGR02168 467 REELEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1683-2126 |
4.37e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.45 E-value: 4.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1683 EIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQ--REHQLRRQVE-----LLAYKVEQEKCI-----ANELQKtlSK 1750
Cdd:PTZ00121 1114 ARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEdaKRVEIARKAEdarkaEEARKAEDAKKAeaarkAEEVRK--AE 1191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1751 EQETASDVRK----RLVVEQNAVQDLKSELHACKQENTSLLESLDKVQQEVLR---LRYGHVTWSYCGTSSASAGRAVLD 1823
Cdd:PTZ00121 1192 ELRKAEDARKaeaaRKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKaeeERNNEEIRKFEEARMAHFARRQAA 1271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1824 GKEKELKVVlEELE--SERGKGQALQAQQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNNQLcvALKHERAAKDNLQK 1901
Cdd:PTZ00121 1272 IKAEEARKA-DELKkaEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAA--KKKAEEAKKAAEAA 1348
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1902 ELQIEASRCEALLAQEKGQLSELQKSLEAERSRSLELSealQHERLLTEQLSRNSQEACARQETqvqhalLRKLKAEKTR 1981
Cdd:PTZ00121 1349 KAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKK---AEEKKKADEAKKKAEEDKKKADE------LKKAAAAKKK 1419
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1982 ALELEAMLEKVQKQAAHTQQQLEAQAQERCVELRREKEVSGNLRSAVDALRthKQELGCCLQREREKAAWLQAELEQlsA 2061
Cdd:PTZ00121 1420 ADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK--KADEAKKKAEEAKKADEAKKKAEE--A 1495
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907073928 2062 RVKEQEARKDArrmERRSSRADLDKRKWQRDKETLRELEIQRQRDEHKIEQLQRLVRELRWKEEV 2126
Cdd:PTZ00121 1496 KKKADEAKKAA---EAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEEL 1557
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
566-1106 |
8.83e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 51.59 E-value: 8.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 566 SKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALElhTAKGLLEGFKVEKVDLQEALGKKEES 645
Cdd:TIGR00606 446 KEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTE--TLKKEVKSLQNEKADLDRKLRKLDQE 523
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 646 EQQLILELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEreagSPVLPAHKDT----------------ALQEE 709
Cdd:TIGR00606 524 MEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGY----FPNKKQLEDWlhskskeinqtrdrlaKLNKE 599
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 710 VESLTRVQWESRKQSEKDRATLLSqmrvleseLEDQLVQHRGC-------AQLAEEVATLKQQLAALDKHLRSQRQFMDD 782
Cdd:TIGR00606 600 LASLEQNKNHINNELESKEEQLSS--------YEDKLFDVCGSqdeesdlERLKEEIEKSSKQRAMLAGATAVYSQFITQ 671
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 783 QAAERE------HEREEFQQEIQRLEGQLRQAARPRPpgprdsqcvqldEEVELLQEKLREKLDGFNELVIKKDFADQQL 856
Cdd:TIGR00606 672 LTDENQsccpvcQRVFQTEAELQEFISDLQSKLRLAP------------DKLKSTESELKKKEKRRDEMLGLAPGRQSII 739
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 857 LIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQENMGDLLLTTVSRSGLDEAGCPMLPQGSSSRGPE 936
Cdd:TIGR00606 740 DLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSD 819
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 937 AQPDVTE-RALLQHENEVVHRRNSEIDELKSLIENLQENQRQLQKD----KAEEI-------------EQLHEVIEKLQS 998
Cdd:TIGR00606 820 LDRTVQQvNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKtnelKSEKLqigtnlqrrqqfeEQLVELSTEVQS 899
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 999 ELSLMGPKVHEVSdPQAGSLHSELAclRGEGLGGQALRSELQAAQAAKEVFGQLlaDQAHGHSQALEALQQ-----RLQD 1073
Cdd:TIGR00606 900 LIREIKDAKEQDS-PLETFLEKDQQ--EKEELISSKETSNKKAQDKVNDIKEKV--KNIHGYMKDIENKIQdgkddYLKQ 974
|
570 580 590
....*....|....*....|....*....|...
gi 1907073928 1074 AEEVAARHLAELEHCVALREAEVEAMASQIQEF 1106
Cdd:TIGR00606 975 KETELNTVNAQLEECEKHQEKINEDMRLMRQDI 1007
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1888-2121 |
1.15e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1888 ALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNSQEacarqetqv 1967
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE--------- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1968 QHALLRKLKAEKTRALELEAMLEKVQKQAAHTQQQLEAQAQERCVELRREKEVSGNLRSAVDALRTHKQELgcclQRERE 2047
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAEL----AALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907073928 2048 KAAWLQAELEQLSARVKEQEARKDARRMERRSSRADLDKRKwQRDKETLRELEIQRQRDEHKIEQLQRLVRELR 2121
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKEL-AELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1825-2125 |
1.83e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 50.36 E-value: 1.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1825 KEKELKVVLEELESERgkgqALQAQQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNNQLCVA-LKHERAAKDNLQKEL 1903
Cdd:pfam02463 171 KKEALKKLIEETENLA----ELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDyLKLNEERIDLLQELL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1904 QIEASRCEALLAQEKGQLSELQKSLEAERSRslELSEALQHERLLTEQLSRNSQEACARQETQVQHALLRKLKAEKTRAL 1983
Cdd:pfam02463 247 RDEQEEIESSKQEIEKEEEKLAQVLKENKEE--EKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKK 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1984 ELEAMLEKVQKQAAHTQQQLEAQAQERCVELRREKEVSGNLRSAVDALRTHKQELgcCLQREREKAAwlqAELEQLSARV 2063
Cdd:pfam02463 325 KAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKK--KLESERLSSA---AKLKEEELEL 399
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907073928 2064 KEQEARKDARRMERRSSRADLDKRKWQRDKETLRELEIQRQRDEHKIEQLQRLVRELRWKEE 2125
Cdd:pfam02463 400 KSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLL 461
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
397-897 |
2.04e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.04 E-value: 2.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 397 LNRELEECRAELEQLQQRRERENQEGTTLICMLrADLELAQGEGKALRDALRRLLDLFGDTLKAAVTLKSRISERAGLLL 476
Cdd:PRK02224 211 LESELAELDEEIERYEEQREQARETRDEADEVL-EEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 477 DHEDAADtsdARLAAAALGDMWSDEGLLEIDRTLPEGAETSSVCEisshvcesffispentlDCEQPIrrvyQSLSTAVE 556
Cdd:PRK02224 290 ELEEERD---DLLAEAGLDDADAEAVEARREELEDRDEELRDRLE-----------------ECRVAA----QAHNEEAE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 557 GLLEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEK---- 632
Cdd:PRK02224 346 SLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERdelr 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 633 -------VDLQEALGKKEESEQQL-----------------ILELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTnEA 688
Cdd:PRK02224 426 ereaeleATLRTARERVEEAEALLeagkcpecgqpvegsphVETIEEDRERVEELEAELEDLEEEVEEVEERLERAE-DL 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 689 KEREAGSpvlpahkdTALQEEVESLTRVQWESRKQSEKDRATlLSQMRVLESELEDQLVQHRGCAQLA--------EEVA 760
Cdd:PRK02224 505 VEAEDRI--------ERLEERREDLEELIAERRETIEEKRER-AEELRERAAELEAEAEEKREAAAEAeeeaeearEEVA 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 761 TLKQQLAALDKHLRSQRQFMDDQAAEREHEreefqQEIQRLEGQLRQAARprppgprdsqcvQLDEEVELLQEK------ 834
Cdd:PRK02224 576 ELNSKLAELKERIESLERIRTLLAAIADAE-----DEIERLREKREALAE------------LNDERRERLAEKrerkre 638
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907073928 835 LREKLDG--FNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEkqkkSMEELKEK 897
Cdd:PRK02224 639 LEAEFDEarIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELE----ELEELRER 699
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
20-715 |
2.04e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.32 E-value: 2.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 20 KREAEERLASMflelreKAESEKLSIIsRFEHrESSMRHLQDQ--QAAQILDLERSLMEQQGHLRQLEQELTRDDLlpcs 97
Cdd:COG1196 174 KEEAERKLEAT------EENLERLEDI-LGEL-ERQLEPLERQaeKAERYRELKEELKELEAELLLLKLRELEAEL---- 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 98 qcgqepAMAQEEkngallREKEDCALQLLMAQNRFLEERKEIMEKFAKEQDAFLRDAQEKHNhelqllqqghQQQLLALR 177
Cdd:COG1196 242 ------EELEAE------LEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEY----------ELLAELAR 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 178 MELETKHRSELTEQLASSESRRQALLETHVAELQvKHNAEISALEKRHLSNLDELEscyvADVQTIRDEHQQALELLRAE 257
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELE-ELEEELEELEEELEEAEEELE----EAEAELAEAEEALLEAEAEL 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 258 LEEQLQKKESCHREMLTQELENLKRQHAEELQSVRDSLRMEMSAQHIEngkgpAADLQGAHQQQDpamalhneghllved 337
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEE-----LEELEEALAELE--------------- 434
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 338 gdavlrsvdaegllhqagpQELGDAHTVEMQKSQAELAKPQELQASQDQVAQVRDKVFLLNRELEECRAELEQLQQRRER 417
Cdd:COG1196 435 -------------------EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLL 495
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 418 ENQEgttlicMLRADLELAQGEGKALRDALRRLLDLFGDTLKAAVTLKSRISERAGLLLDHEDAADTSDARLAAAALGDm 497
Cdd:COG1196 496 LLEA------EADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKA- 568
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 498 wSDEGLLEIDRTLPEGAETSSVCEISSHVCESFFISPENTLDCEQPIRRVYQSLSTAVEGLLEMALDSSKQLEEARQLHR 577
Cdd:COG1196 569 -AKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLR 647
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 578 CVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLR 657
Cdd:COG1196 648 EVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE 727
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*...
gi 1907073928 658 KQLQQAARELLTLKEEksvlwnQKETLTNEAKEREAGSPVLpahkdTALQEEVESLTR 715
Cdd:COG1196 728 EQLEAEREELLEELLE------EEELLEEEALEELPEPPDL-----EELERELERLER 774
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
560-804 |
2.33e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 2.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 560 EMALDSSKQLEEARQLhrcVErEFR--HRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKvdLQE 637
Cdd:COG4913 215 EYMLEEPDTFEAADAL---VE-HFDdlERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWF--AQR 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 638 ALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEReagspvlpahkdtaLQEEVESLTRvq 717
Cdd:COG4913 289 RLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQ--------------LEREIERLER-- 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 718 weSRKQSEKDRATLLSQMRVLESEL---EDQLVQHRgcAQLAEEVATLKQQLAALDKHLRSQRqfmdDQAAEREHEREEF 794
Cdd:COG4913 353 --ELEERERRRARLEALLAALGLPLpasAEEFAALR--AEAAALLEALEEELEALEEALAEAE----AALRDLRRELREL 424
|
250
....*....|
gi 1907073928 795 QQEIQRLEGQ 804
Cdd:COG4913 425 EAEIASLERR 434
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
18-870 |
2.67e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.97 E-value: 2.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 18 ELKREAEERLASMFLELREKAESEKLSIISRFEH---RESSMRHLQDQQAAQILDLERSLMEQQGHLRQLEQELTRDDLl 94
Cdd:pfam02463 169 RKKKEALKKLIEETENLAELIIDLEELKLQELKLkeqAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLR- 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 95 pcSQCGQEPAMAQEEKNGALLREKEDCALQLLMAQNRFLEERKEIMEKFAKEQDAFLRDAQEKHNHELQLLQQGHQQQLL 174
Cdd:pfam02463 248 --DEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKK 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 175 ALRMELETKHRSELTEQLASSESRRQALLETHVAELQVKHNAEISALEKRHLSNLDELEscyvADVQTIRDEHQQALELL 254
Cdd:pfam02463 326 AEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESE----RLSSAAKLKEEELELKS 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 255 RAELEEQLQKKESCHREMLTQELENLKRQHAEELQSVRDSLRM-------EMSAQHIENGKGPAADLQGAHQQQDPAMAL 327
Cdd:pfam02463 402 EEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGklteekeELEKQELKLLKDELELKKSEDLLKETQLVK 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 328 HNEGHLLVEDGDAVLRSVDAE--------GLLHQAGPQELGDAHTVEMQKSQAELAKPQELQASQDQVAQVRDKVFLLNR 399
Cdd:pfam02463 482 LQEQLELLLSRQKLEERSQKEskarsglkVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVE 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 400 ELEECRAELEQLQQRRERENQEGTTLICMLRADLELAQGEGKALRDALRRLLDLFGDTLKAAVTLKSRISERAGLLLDHE 479
Cdd:pfam02463 562 ERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESA 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 480 DAADTSDARLAAAALGDMWS---DEGLLEIDRTLPEGAETSSVCEISSHVCESFFISPENTLDCEQPIRRVYQSLSTAVE 556
Cdd:pfam02463 642 KAKESGLRKGVSLEEGLAEKsevKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEE 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 557 GLLEMALDSSKQLEEARQLHRCVEREFRHRNEEMA-QAMQKQQELLER-LREESAAKDRLALELHTAKGLLEGFKVEKVD 634
Cdd:pfam02463 722 LLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRlKKEEKEEEKSELsLKEKELAEEREKTEKLKVEEEKEEKLKAQEE 801
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 635 LQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEREAGSPVLPAHKDTALQEEVESLT 714
Cdd:pfam02463 802 ELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEE 881
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 715 RVQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRqfmDDQAAEREHEREEF 794
Cdd:pfam02463 882 QKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEE---ADEKEKEENNKEEE 958
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 795 QQEIQRLEGQLRQAARPRPPGPRDSQCVQLDEE--------------------VELLQEKLREKLDGFNELVIKKDFADQ 854
Cdd:pfam02463 959 EERNKRLLLAKEELGKVNLMAIEEFEEKEERYNkdelekerleeekkkliraiIEETCQRLKEFLELFVSINKGWNKVFF 1038
|
890
....*....|....*.
gi 1907073928 855 QLLIQEEEIKRLEETN 870
Cdd:pfam02463 1039 YLELGGSAELRLEDPD 1054
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1812-2069 |
5.86e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 5.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1812 TSSASAGRAVLDGKEKELKVVLEELESERGKGQALQAQQEEQQLRYLQREGQSSRaleelklsLEKQLAQNNQLCVALKH 1891
Cdd:TIGR02168 690 EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ--------LEERIAQLSKELTELEA 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1892 ERAAKDNLQKELQIEASRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQ-HERLLTEQLSRNSQEACARQETQVQHA 1970
Cdd:TIGR02168 762 EIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTlLNEEAANLRERLESLERRIAATERRLE 841
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1971 LLRKLKAEKTRALE--------LEAMLEKVQKQAAHTQQQLEAQAQERcVELRREKEvsgNLRSAVDALRTHKQELGCCL 2042
Cdd:TIGR02168 842 DLEEQIEELSEDIEslaaeieeLEELIEELESELEALLNERASLEEAL-ALLRSELE---ELSEELRELESKRSELRREL 917
|
250 260
....*....|....*....|....*..
gi 1907073928 2043 QREREKAAWLQAELEQLSARVKEQEAR 2069
Cdd:TIGR02168 918 EELREKLAQLELRLEGLEVRIDNLQER 944
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
595-999 |
1.00e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.71 E-value: 1.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 595 QKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEK 674
Cdd:TIGR04523 225 KQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQK 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 675 SVLWNQ--KETLTNEAKE-REAGSPVLPAHKD-TALQEEVESLTRvqweSRKQSEKDRATLLSQMRVLESELEDQLVQHr 750
Cdd:TIGR04523 305 EQDWNKelKSELKNQEKKlEEIQNQISQNNKIiSQLNEQISQLKK----ELTNSESENSEKQRELEEKQNEIEKLKKEN- 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 751 gcAQLAEEVATLKQQLAALDKHLRSQR---QFMDDQAAEREHEREEFQQEIQRLEgqlrqaarprppgprdSQCVQLDEE 827
Cdd:TIGR04523 380 --QSYKQEIKNLESQINDLESKIQNQEklnQQKDEQIKKLQQEKELLEKEIERLK----------------ETIIKNNSE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 828 VELLQEKLREKLDGFNELVIKKDfadqqllIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQENMGD 907
Cdd:TIGR04523 442 IKDLTNQDSVKELIIKNLDNTRE-------SLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKD 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 908 LLlttvsrsgldeagcpmlPQGSSSRgpeaqpdVTERALlqhENEVVhRRNSEIDELKSLIENLQEN--QRQLQK---DK 982
Cdd:TIGR04523 515 LT-----------------KKISSLK-------EKIEKL---ESEKK-EKESKISDLEDELNKDDFElkKENLEKeidEK 566
|
410
....*....|....*..
gi 1907073928 983 AEEIEQLHEVIEKLQSE 999
Cdd:TIGR04523 567 NKEIEELKQTQKSLKKK 583
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1591-2077 |
1.06e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.01 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1591 RDSQALSEVTTDKGEKESLETHL-TWSEELLRAIQEVFAREQEKAELQprpygsnlGDYNSLVQRLEKVIQEQGDPQKVQ 1669
Cdd:COG1196 310 RRRELEERLEELEEELAELEEELeELEEELEELEEELEEAEEELEEAE--------AELAEAEEALLEAEAELAEAEEEL 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1670 DHLcLSDRSSLLAEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVELLAYKVEQEKCIANELQKTLS 1749
Cdd:COG1196 382 EEL-AEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1750 KEQETASDVRKRLVVEQnAVQDLKSELHACKQENTSLLESLDKVQQEVLRLRYGHVTWSYCGtsSASAGRAVLDGKEKEL 1829
Cdd:COG1196 461 LLELLAELLEEAALLEA-ALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG--LAGAVAVLIGVEAAYE 537
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1830 KVVLEELESERGKGQALQAQQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNNQLCVALKHERAAKDNLQKELQIEASR 1909
Cdd:COG1196 538 AALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYV 617
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1910 CEALLAQEkgqlSELQKSLEAERSRSLELSEALQHERLLTEQLSRNSQEAcaRQETQVQHALLRKLKAEKTRALELEAML 1989
Cdd:COG1196 618 LGDTLLGR----TLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLT--GGSRRELLAALLEAEAELEELAERLAEE 691
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1990 EKVQKQAAHTQQQLEAQAQERCVELRREKEVSGNLRSAVDALRTHKQELGCCLQREREKAAwLQAELEQLSARVKEQEAR 2069
Cdd:COG1196 692 ELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEA-LEELPEPPDLEELERELE 770
|
....*...
gi 1907073928 2070 KDARRMER 2077
Cdd:COG1196 771 RLEREIEA 778
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
795-921 |
1.45e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 47.16 E-value: 1.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 795 QQEIQRLEGQLRQaarprppgprdsqcvqLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQ---EEEIKRLEETNA 871
Cdd:COG2433 412 EEEIRRLEEQVER----------------LEAEVEELEAELEEKDERIERLERELSEARSEERREirkDREISRLDREIE 475
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1907073928 872 SIQRQMVQLQEELEKQKKSMEELkeKEILKQENMGDLL----LTTVSRSGLDEA 921
Cdd:COG2433 476 RLERELEEERERIEELKRKLERL--KELWKLEHSGELVpvkvVEKFTKEAIRRL 527
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2-470 |
1.90e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.85 E-value: 1.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 2 KEEFQKKEAEWELSREELKREAEERLAsmflelREKAESEKLSIISRFEHRESSMRHLQDQQAAQILDLERSLMEQQGHL 81
Cdd:COG1196 343 EEELEEAEEELEEAEAELAEAEEALLE------AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERL 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 82 RQLEQELTrddllpcsqcgqepamAQEEKNGALLREKEDCALQLLMAQNRFLEERKEIMEKFAKEQDAFLRDAQEKHNHE 161
Cdd:COG1196 417 ERLEEELE----------------ELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA 480
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 162 LQLLQQGHQQQLLALRMELETKHRSELTEQLASSESRRQALLETHVAELQVKHNAEISALEKRHLSNLdelescyvadVQ 241
Cdd:COG1196 481 ELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAAL----------QN 550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 242 TIRDEHQQALELLRAELEEQLQKKEschREMLTQELENLKRQHAEELQSVRDSLRMEMSAQHIENGKGPAADLQGAHQQQ 321
Cdd:COG1196 551 IVVEDDEVAAAAIEYLKAAKAGRAT---FLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTL 627
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 322 DPAMALHNEGHLLVEDGDAVLRSVDAEGLlhQAGPQELGDAhtvEMQKSQAELAKPQELQASQDQVAQVRDKVFLLNREL 401
Cdd:COG1196 628 VAARLEAALRRAVTLAGRLREVTLEGEGG--SAGGSLTGGS---RRELLAALLEAEAELEELAERLAEEELELEEALLAE 702
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907073928 402 EECRAELEQLQQRRERENQEGTTLICMLRADLELAQGEGKALRDALRRLLDLFGDTLKAAVTLKSRISE 470
Cdd:COG1196 703 EEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELER 771
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1713-2084 |
1.91e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 1.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1713 EARGSQREHQLRRQVELLAYKVEqEKCIANELQKTlSKEQETASDVRKRLVVEQNAVQDLKSELHAcKQENTSLLESLDK 1792
Cdd:PTZ00121 1445 KADEAKKKAEEAKKAEEAKKKAE-EAKKADEAKKK-AEEAKKADEAKKKAEEAKKKADEAKKAAEA-KKKADEAKKAEEA 1521
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1793 VQQEVLRlryghvtwsycgtsSASAGRAVLDGKEKELKVVLEELESERGKGQALQAQQEEQQLRYLQREGQSSRALEELK 1872
Cdd:PTZ00121 1522 KKADEAK--------------KAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAK 1587
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1873 LSLEKQLAQNNQLCVALKHERAAKDNLQKELQIEASRCEALlAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQL 1952
Cdd:PTZ00121 1588 KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA-EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEE 1666
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1953 SRN-------SQEACARQETQVQHALLRKLKAEKTRALELEAMLEKVQKQAAHTQQQLEAQAQERCVELRREKEVSgnlR 2025
Cdd:PTZ00121 1667 AKKaeedkkkAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED---K 1743
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 2026 SAVDALRTHKQELGCCLQREREKAAWLQAELEQLSARVKEQEARKD-ARRMERRSSRADL 2084
Cdd:PTZ00121 1744 KKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDeKRRMEVDKKIKDI 1803
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
710-1114 |
1.96e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 1.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 710 VESLTRVQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLAALD---KHLRSQRQFMDD--QA 784
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEaelEELREELEKLEKllQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 785 AEREHEREEFQQEIQRLEGQLRQA-ARPRPPGPRDSQCVQLDEEVELLQEKLREKLDGFNeLVIKKDFADQQLLIQE--E 861
Cdd:COG4717 128 LPLYQELEALEAELAELPERLEELeERLEELRELEEELEELEAELAELQEELEELLEQLS-LATEEELQDLAEELEElqQ 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 862 EIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQE---------------NMGDLLLTTVSRSGLDEAGCPML 926
Cdd:COG4717 207 RLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEArlllliaaallallgLGGSLLSLILTIAGVLFLVLGLL 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 927 PQGSSSRGPEAQPDVTERALLQHENEVVHRRNSEIDELKS---LIENLQENQRQLQKDKAEEIEQLHEVIEKLQSELSLM 1003
Cdd:COG4717 287 ALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAalgLPPDLSPEELLELLDRIEELQELLREAEELEEELQLE 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1004 GPKVHEVSDPQAGSLHSElaclrgeglggQALRSELQAAQAAKEVFGQLLADQAHGHSQALEALQQRLQDAEEVAARHLA 1083
Cdd:COG4717 367 ELEQEIAALLAEAGVEDE-----------EELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELE 435
|
410 420 430
....*....|....*....|....*....|.
gi 1907073928 1084 ELEHCVALREAEVEAMASQIQEFAATLKAKE 1114
Cdd:COG4717 436 ELEEELEELEEELEELREELAELEAELEQLE 466
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1645-1957 |
2.27e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.97 E-value: 2.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1645 LGDYNSLVQRLEKVIQEQGDPQKVQDHLclsdrSSLLAEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLR 1724
Cdd:TIGR02168 231 VLRLEELREELEELQEELKEAEEELEEL-----TAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQ 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1725 RQVELLAYKVEQEKCIANELQKTLSKEQETA---SDVRKRLVVEQNAVQDLKSELHACKQENTSLLESLDKVQQEVLRLR 1801
Cdd:TIGR02168 306 ILRERLANLERQLEELEAQLEELESKLDELAeelAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLR 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1802 yghvtwsyCGTSSASAGRAVLDGKEKELKVVLEELESERGKGQALQAQQEEQQLRYLQREgqSSRALEELKLSLEKQLAQ 1881
Cdd:TIGR02168 386 --------SKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKE--LQAELEELEEELEELQEE 455
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907073928 1882 NNQLCVALKHERAAKDNLQKELQIEASRcealLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNSQ 1957
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQALDAAERE----LAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSE 527
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
700-1109 |
2.61e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 46.76 E-value: 2.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 700 AHKDTALQEEVESLTRVQWE------SRKQSEKDRATLLSQMRVLESELEDQLVQHRgcAQLAEEVATLKQQLAALD--- 770
Cdd:pfam12128 240 RPEFTKLQQEFNTLESAELRlshlhfGYKSDETLIASRQEERQETSAELNQLLRTLD--DQWKEKRDELNGELSAADaav 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 771 KHLRSQRQFMDDQAAErehereeFQQE-IQRLEGQLRQAARPRppgprdSQCVQLDEEVELLQEKLREKLDGFNELVIK- 848
Cdd:pfam12128 318 AKDRSELEALEDQHGA-------FLDAdIETAAADQEQLPSWQ------SELENLEERLKALTGKHQDVTAKYNRRRSKi 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 849 --------KDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKsmeELKEKEILKQENMGDLllttvsrsglde 920
Cdd:pfam12128 385 keqnnrdiAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKL---EFNEEEYRLKSRLGEL------------ 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 921 agcpmlpqgsssRGPEAQPDVTERALLQHEN--EVVHRRNSEIDELKSLIENLQENQRQLQK--DKAEE-IEQLHEVIEK 995
Cdd:pfam12128 450 ------------KLRLNQATATPELLLQLENfdERIERAREEQEAANAEVERLQSELRQARKrrDQASEaLRQASRRLEE 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 996 LQSELSlmgpKVHEVSDPQAGSLHSELA------------CLRGEGLGGQALRSELQAAQAAKE--VFG------QLLAD 1055
Cdd:pfam12128 518 RQSALD----ELELQLFPQAGTLLHFLRkeapdweqsigkVISPELLHRTDLDPEVWDGSVGGElnLYGvkldlkRIDVP 593
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 1907073928 1056 QAHGHSQALEALQQRLQDAEEVAARHLAELEHCVALREAEVEAmASQIQEFAAT 1109
Cdd:pfam12128 594 EWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEK-ASREETFART 646
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2-425 |
2.94e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.67 E-value: 2.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 2 KEEFQKKEAEWELSREELKREAEERLASMfLELREKAESEKLSIISRFEHRESSMRHLQ-DQQAAQILDLERSLMEQQGH 80
Cdd:PTZ00121 1303 KADEAKKKAEEAKKADEAKKKAEEAKKKA-DAAKKKAEEAKKAAEAAKAEAEAAADEAEaAEEKAEAAEKKKEEAKKKAD 1381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 81 -LRQLEQELTRDDLLPcSQCGQEPAMAQEEKNGALLREKEDcALQLLMAQNRFLEERKEIMEKfAKEQDAFLRDAQEKHN 159
Cdd:PTZ00121 1382 aAKKKAEEKKKADEAK-KKAEEDKKKADELKKAAAAKKKAD-EAKKKAEEKKKADEAKKKAEE-AKKADEAKKKAEEAKK 1458
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 160 HELQLLQQGHQQQLLALRMELETKHRSELTEQLASsESRRQALLETHVAELQVKHNAEISALEKRHLSNLDELESCYVAD 239
Cdd:PTZ00121 1459 AEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAE-EAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKAD 1537
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 240 VQTIRDEHQQALELLRAELEEQLQKKESCHREMLTQELENLKRQHAEELQSVRDSLRMEMSAQHIENGKGPAADLQGAHQ 319
Cdd:PTZ00121 1538 EAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEE 1617
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 320 QQDPAMALHNEGHLLVEDGDAVLRSVDAEGLLHQAGPQELGDAHTVEMQKSQAELAKPQELQASQDQVAQvRDKVFLLNR 399
Cdd:PTZ00121 1618 AKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDE-KKAAEALKK 1696
|
410 420
....*....|....*....|....*.
gi 1907073928 400 ELEECRaELEQLQQRRERENQEGTTL 425
Cdd:PTZ00121 1697 EAEEAK-KAEELKKKEAEEKKKAEEL 1721
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1682-1959 |
3.06e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.20 E-value: 3.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1682 AEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQRE------HQLRRQVELLAYKVEQEKCIANELQKTLSKEQETA 1755
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEqlrkelEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1756 SDVRKRLVVEQNAVQDLKSELHACKQENTSLLESLDKVQQEvlrlryghvtwsycgtssASAGRAVLDGKEKELKvvleE 1835
Cdd:TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE------------------LKALREALDELRAELT----L 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1836 LESERGKgqalqaqQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNNQLCVALKHERAAKDNLQKELQI---EASRCEA 1912
Cdd:TIGR02168 815 LNEEAAN-------LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAllnERASLEE 887
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1907073928 1913 LLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNSQEA 1959
Cdd:TIGR02168 888 ALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL 934
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
823-998 |
3.67e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 3.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 823 QLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELkEKEILKQ 902
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL-RAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 903 ENMGDLLLTTVSRSGLDEAGCPMLPQGSSSRGpeaqpdVTERALLQHeneVVHRRNSEIDELKSLIENLQENQRQLQKDK 982
Cdd:COG4942 103 KEELAELLRALYRLGRQPPLALLLSPEDFLDA------VRRLQYLKY---LAPARREQAEELRADLAELAALRAELEAER 173
|
170
....*....|....*.
gi 1907073928 983 AEEIEQLHEVIEKLQS 998
Cdd:COG4942 174 AELEALLAELEEERAA 189
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
602-816 |
4.32e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 4.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 602 ERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSVLWNQK 681
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 682 ETLTNEAKER--------EAGSPVLPAHKDTALQEE-----VESLTRVQWESRKQSEKDRATLLSQMRVLESELEDQLVQ 748
Cdd:COG4942 100 EAQKEELAELlralyrlgRQPPLALLLSPEDFLDAVrrlqyLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907073928 749 HRGCAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAARPRPPGP 816
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1974-2129 |
7.02e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 44.85 E-value: 7.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1974 KLKAEKTRALELEAMLEKVQKQAAHTQQQLEAQAQERCV-ELRREKEVSGNLRSAVDALRTHKQELgcclqrerekaawl 2052
Cdd:COG2433 367 EVKARVIRGLSIEEALEELIEKELPEEEPEAEREKEHEErELTEEEEEIRRLEEQVERLEAEVEEL-------------- 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 2053 QAELEQLSARVKEQEAR-KDARRMERRSSRADldkRKWQRDKETLRELEIQRQRDEHKIEQLQRLVRELR--WKEEVSGG 2129
Cdd:COG2433 433 EAELEEKDERIERLERElSEARSEERREIRKD---REISRLDREIERLERELEEERERIEELKRKLERLKelWKLEHSGE 509
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
362-973 |
9.94e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 9.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 362 AHTVEMQKSQAELAKPQELQASQDQVAQVRdKVFLLNRELEECRAELEQLQQRRERenqegttlicmLRADLELAQGEgk 441
Cdd:COG4913 259 ELAERYAAARERLAELEYLRAALRLWFAQR-RLELLEAELEELRAELARLEAELER-----------LEARLDALREE-- 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 442 aLRDALRRLLDLFGDTLKAavtLKSRISERAGLLLDHEDAADTSDARLAAAALGDMWSDEGLLEIDRTLPEGAEtssvce 521
Cdd:COG4913 325 -LDELEAQIRGNGGDRLEQ---LEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLE------ 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 522 isshvcesffispentldceqpirrvyqslstavegllemaldsskqlEEARQLHRCVEREFRHRNEEmAQAMQKQQELL 601
Cdd:COG4913 395 ------------------------------------------------ALEEELEALEEALAEAEAAL-RDLRRELRELE 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 602 ERLREESAAKDRLALELHTAKGLLEgfkvekvdlqEALGKKEeseqqlilelEDLRkqlqqAARELLTLKEEKS------ 675
Cdd:COG4913 426 AEIASLERRKSNIPARLLALRDALA----------EALGLDE----------AELP-----FVGELIEVRPEEErwrgai 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 676 --VLWNQKETLTneakereagspVLPAHKDTALqEEVESL---TRVQWE-------SRKQSEKDRATLLSQMRVLESELE 743
Cdd:COG4913 481 erVLGGFALTLL-----------VPPEHYAAAL-RWVNRLhlrGRLVYErvrtglpDPERPRLDPDSLAGKLDFKPHPFR 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 744 D---QLVQHRGCAQLAEEVATLKQQ-----LAALDKHLRSQRQfMDDQAAER---------EHEREEFQQEIQRLEGQLR 806
Cdd:COG4913 549 AwleAELGRRFDYVCVDSPEELRRHpraitRAGQVKGNGTRHE-KDDRRRIRsryvlgfdnRAKLAALEAELAELEEELA 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 807 QAarprppgprDSQCVQLDEEVELLQEKLR--EKLDGFNELVIKKDFADQQLLIQEEEIKRLEETN---ASIQRQMVQLQ 881
Cdd:COG4913 628 EA---------EERLEALEAELDALQERREalQRLAEYSWDEIDVASAEREIAELEAELERLDASSddlAALEEQLEELE 698
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 882 EELEKQKKSMEELKEKEILKQENMGDLL-LTTVSRSGLDEAGcpmlPQGSSSRGPEAQPDVTERALLQHENEVVHRRNSE 960
Cdd:COG4913 699 AELEELEEELDELKGEIGRLEKELEQAEeELDELQDRLEAAE----DLARLELRALLEERFAAALGDAVERELRENLEER 774
|
650
....*....|...
gi 1907073928 961 IDELKSLIENLQE 973
Cdd:COG4913 775 IDALRARLNRAEE 787
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
653-883 |
1.02e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 653 LEDLRKQLQQAARELLTLKEEKSVLWNQKETLtneakereagspvlpahkdTALQEEVESLTRVQWEsrkqsEKDRATLL 732
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDAL-------------------QERREALQRLAEYSWD-----EIDVASAE 667
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 733 SQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRQfmddqaaerehEREEFQQEIQRLEGQLRQAARpr 812
Cdd:COG4913 668 REIAELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKG-----------EIGRLEKELEQAEEELDELQD-- 734
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907073928 813 ppgprdsqcvQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEE 883
Cdd:COG4913 735 ----------RLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1653-2285 |
1.16e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.58 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1653 QRLEKVIQEQGDPQKVQDHLCLSDRSSLLAEIQALRAqlrMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVELLAY 1732
Cdd:pfam02463 173 EALKKLIEETENLAELIIDLEELKLQELKLKEQAKKA---LEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDE 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1733 KVEQEKcianeLQKTLSKEQETASDVRKRLVVEQNAVQDLKSELHAC-KQENTSLLESLDKVQQEVLRLRYghvtwsycg 1811
Cdd:pfam02463 250 QEEIES-----SKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLaKEEEELKSELLKLERRKVDDEEK--------- 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1812 TSSASAGRAVLDGKEKELKVVLEELESERGKGQALQAQQEEQQLRYLQREGQSSRALEELKLSLEKQLAQ--------NN 1883
Cdd:pfam02463 316 LKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERlssaaklkEE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1884 QLCVALKHERAAKDNLQkELQIEASRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNSQEACARQ 1963
Cdd:pfam02463 396 ELELKSEEEKEAQLLLE-LARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLL 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1964 ETQVQHALLRKLKAEKTRALELEAmlekVQKQAAHTQQQLEAQAQERCVELRREKEVSGNLRSAVDALRTHKQELGCCLQ 2043
Cdd:pfam02463 475 KETQLVKLQEQLELLLSRQKLEER----SQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVI 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 2044 REREKAAwlQAELEQLSARVKEQEARKDARRMERRSSRADLDKRKwqrdketLRELEIQRQRDEHKIEQLQRLVRELRWK 2123
Cdd:pfam02463 551 VEVSATA--DEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKS-------IAVLEIDPILNLAQLDKATLEADEDDKR 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 2124 EEVSGGNGPCRgspgRGSLERDQFQEQQQELEKIRQQLLCAAGLLTSFTNHTVDRTIKDWTSSNEKAVSSLMRTLEELKS 2203
Cdd:pfam02463 622 AKVVEGILKDT----ELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRR 697
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 2204 ELSMPTSFQKKMTAELQVQLMNELLSDNDALTKAVGMATREKAELCRTVSRLEKTLKHHTQKGCVLNRQSKSSLKQDGTD 2283
Cdd:pfam02463 698 QLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELA 777
|
..
gi 1907073928 2284 LQ 2285
Cdd:pfam02463 778 EE 779
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
989-1125 |
1.28e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 43.42 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 989 LHEVIEKLQSELSLMGPKVHEVSD------PQAGSLHSELACLRGEGLGGQALRSELQAAQAAKEVFGQLLADQAHGHSQ 1062
Cdd:PRK09039 44 LSREISGKDSALDRLNSQIAELADllslerQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQ 123
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907073928 1063 ALEALQQrlqdaeeVAARHLAElehcVALREAEVEAMASQIQEFAATLKAKEAIIEQRDLEID 1125
Cdd:PRK09039 124 ELDSEKQ-------VSARALAQ----VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIA 175
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1705-1962 |
1.57e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 1.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1705 LCAALTSTEARGSQRE-HQLRRQVELLAYKVEQEKCIANELQKTLSKEQETASDVRKRLVVEQNAVQDLKSELHACKQEN 1783
Cdd:COG4942 13 LAAAAQADAAAEAEAElEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1784 TSLLESLDKVQQEVLRLryghvtwsycgtssasAGRAVLDGKEKELKVVLeelesergkgqalQAQQEEQQLRYLQREGQ 1863
Cdd:COG4942 93 AELRAELEAQKEELAEL----------------LRALYRLGRQPPLALLL-------------SPEDFLDAVRRLQYLKY 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1864 SSRALEELKLSLEKQLAQNNQLCVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQ 1943
Cdd:COG4942 144 LAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAE 223
|
250
....*....|....*....
gi 1907073928 1944 HERLLTEQLSRNSQEACAR 1962
Cdd:COG4942 224 ELEALIARLEAEAAAAAER 242
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
549-1001 |
2.16e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.57 E-value: 2.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 549 QSLSTAVEGLLEMALDSSKQLEEARQLHRCVErEFRHRNEEMAQAMQKQQELLERLREESAAK-DRLALELHTAKGLLEG 627
Cdd:pfam15921 110 QSVIDLQTKLQEMQMERDAMADIRRRESQSQE-DLRNQLQNTVHELEAAKCLKEDMLEDSNTQiEQLRKMMLSHEGVLQE 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 628 FKVEKVDLQEALGKK-EESEQQLILELEDLRKQLQQAARELLT----LKEEKSVLWNQKETLTNEAKEREagSPVLPAHK 702
Cdd:pfam15921 189 IRSILVDFEEASGKKiYEHDSMSTMHFRSLGSAISKILRELDTeisyLKGRIFPVEDQLEALKSESQNKI--ELLLQQHQ 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 703 DTALQ------EEVESLTRVQWESRKQSEkdraTLLSQMRVLESELEDQLVQH-RGCAQLAEEVATLKQQLAALDK---- 771
Cdd:pfam15921 267 DRIEQliseheVEITGLTEKASSARSQAN----SIQSQLEIIQEQARNQNSMYmRQLSDLESTVSQLRSELREAKRmyed 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 772 ---HLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAArprppgprdSQCVQLDEEVELLQEKLREKLDGFNELVIK 848
Cdd:pfam15921 343 kieELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLL---------ADLHKREKELSLEKEQNKRLWDRDTGNSIT 413
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 849 KDFADQQLLIQEEEIKRLE--------ETNASIQRQMVQLQ---EELEKQKKSMEELKE-KEILkqenmgdlllttvsRS 916
Cdd:pfam15921 414 IDHLRRELDDRNMEVQRLEallkamksECQGQMERQMAAIQgknESLEKVSSLTAQLEStKEML--------------RK 479
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 917 GLDEAGCPMLPQGSSSRgpeAQPDVTerALLQHENEVVHRRNSEIDELKSLIEnLQENQRQLQKDKAEEIEQLHEVIEKL 996
Cdd:pfam15921 480 VVEELTAKKMTLESSER---TVSDLT--ASLQEKERAIEATNAEITKLRSRVD-LKLQELQHLKNEGDHLRNVQTECEAL 553
|
....*
gi 1907073928 997 QSELS 1001
Cdd:pfam15921 554 KLQMA 558
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
567-1097 |
2.29e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.42 E-value: 2.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 567 KQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREE----------SAAKDRLALELHTAKGLLEGFKVEKVDLQ 636
Cdd:TIGR00618 229 KHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIeelraqeavlEETQERINRARKAAPLAAHIKAVTQIEQQ 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 637 EA-----LGKKEESEQQLILELEDLRKQ---LQQAARELLTL--KEEKSVLWNQKETLTNEAKEREAGSpvlpAHKDTAL 706
Cdd:TIGR00618 309 AQrihteLQSKMRSRAKLLMKRAAHVKQqssIEEQRRLLQTLhsQEIHIRDAHEVATSIREISCQQHTL----TQHIHTL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 707 QEEVESLTRVQWESRKQSEKDR------ATLLSQMRVLESEL----EDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQ 776
Cdd:TIGR00618 385 QQQKTTLTQKLQSLCKELDILQreqatiDTRTSAFRDLQGQLahakKQQELQQRYAELCAAAITCTAQCEKLEKIHLQES 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 777 RQFMDDQAAEREHEREEFQQ--EIQRLEGQ--LRQAARPRP-----------------PGPRDSQCVQLDEEVELLQE-- 833
Cdd:TIGR00618 465 AQSLKEREQQLQTKEQIHLQetRKKAVVLArlLELQEEPCPlcgscihpnparqdidnPGPLTRRMQRGEQTYAQLETse 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 834 -----KLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQ---KKSMEELKEKEILKQENM 905
Cdd:TIGR00618 545 edvyhQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLseaEDMLACEQHALLRKLQPE 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 906 GDLLLTTVSRSGLDEAGCPMLPQGSSSRGPEAQPDVTERALL--QHENEVVHRRNSEIDELKSLIenlqenqRQLQKDKa 983
Cdd:TIGR00618 625 QDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSirVLPKELLASRQLALQKMQSEK-------EQLTYWK- 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 984 EEIEQLHEVIEKLQSELSLMGPKVHEVSDpqagSLHSELACLRGEGLGGQALRSELQAAQaaKEVFGQLLADQAHGHSQA 1063
Cdd:TIGR00618 697 EMLAQCQTLLRELETHIEEYDREFNEIEN----ASSSLGSDLAAREDALNQSLKELMHQA--RTVLKARTEAHFNNNEEV 770
|
570 580 590
....*....|....*....|....*....|....*....
gi 1907073928 1064 LEALQ--QRLQDAE---EVAARHLAELEHCVALREAEVE 1097
Cdd:TIGR00618 771 TAALQtgAELSHLAaeiQFFNRLREEDTHLLKTLEAEIG 809
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
71-885 |
2.31e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.42 E-value: 2.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 71 ERSLMEQQGHLRQL------EQELTRDDLLPCSQCGQEPAMAQEEKNGA-----LLREKEDCALQLLMAQNRFLEERKEI 139
Cdd:TIGR00618 144 TRVVLLPQGEFAQFlkakskEKKELLMNLFPLDQYTQLALMEFAKKKSLhgkaeLLTLRSQLLTLCTPCMPDTYHERKQV 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 140 MEKFAKEQDAFLRDAQEKHNHELQLLQQGHQQQLLALRMELETKHRSELTEQLASSESRRQAL-LETHVAELqvkhnaei 218
Cdd:TIGR00618 224 LEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERInRARKAAPL-------- 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 219 sALEKRHLSNLDELESCYVADVQTIRDEHQQALELLRAELEEQLQKKESCHREMLTQELENLKRQHAEELQSVRDslrmE 298
Cdd:TIGR00618 296 -AAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIRE----I 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 299 MSAQHiengkgpaADLQGAHQQQDPAMALHNEGHLLVEDGDAVLRSVDAEGLLHQAGPQELGDAHTVEMQKSQAELAKPQ 378
Cdd:TIGR00618 371 SCQQH--------TLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAEL 442
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 379 ELQASQDQVAQVRDKVFLLNRELEECRAELEQLQQRRERENQEgttlicmlradlelaqGEGKALRdalrrlldlfgdtL 458
Cdd:TIGR00618 443 CAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQE----------------TRKKAVV-------------L 493
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 459 KAAVTLKSRISERAGLLLDHEDAADTSDArlaaaalgdmwsdeglleidrtlpEGAETSSVCEISSHVCESffispentl 538
Cdd:TIGR00618 494 ARLLELQEEPCPLCGSCIHPNPARQDIDN------------------------PGPLTRRMQRGEQTYAQL--------- 540
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 539 dcEQPIRRVYQSLSTavegLLEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALEL 618
Cdd:TIGR00618 541 --ETSEEDVYHQLTS----ERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQ 614
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 619 HTAKGLLEgFKVEKVDLQEALGKKEESEQQLILELEDLRKQL-QQAARE-LLTLKEEKSVLWNQKETLTNEAKER-EAGS 695
Cdd:TIGR00618 615 HALLRKLQ-PEQDLQDVRLHLQQCSQELALKLTALHALQLTLtQERVREhALSIRVLPKELLASRQLALQKMQSEkEQLT 693
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 696 PVLP--AHKDTALQEEVESLTrvqwESRKQSEKDRATLLSQmrvlESELEDQLVQHRGCAQLAEEVATLKQQLAALDKHL 773
Cdd:TIGR00618 694 YWKEmlAQCQTLLRELETHIE----EYDREFNEIENASSSL----GSDLAAREDALNQSLKELMHQARTVLKARTEAHFN 765
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 774 RSQRQFMD----DQAAEREHEREEFQQEIQRLEGQLR------QAARPRPPGPRDSQCVQLDEEVELLQEKLREKLDGFN 843
Cdd:TIGR00618 766 NNEEVTAAlqtgAELSHLAAEIQFFNRLREEDTHLLKtleaeiGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLG 845
|
810 820 830 840
....*....|....*....|....*....|....*....|..
gi 1907073928 844 ELvikkdfaDQQLLIQEEEIKRLEETNASiQRQMVQLQEELE 885
Cdd:TIGR00618 846 EI-------THQLLKYEECSKQLAQLTQE-QAKIIQLSDKLN 879
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1721-2060 |
2.97e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.12 E-value: 2.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1721 HQLRRQVELL---AYKVEQEKCIANEL---QKTLSKeqetasdvrKRLVVEQNAVQDLKSELHACKQENTSLLESLDKVQ 1794
Cdd:TIGR02168 196 NELERQLKSLerqAEKAERYKELKAELrelELALLV---------LRLEELREELEELQEELKEAEEELEELTAELQELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1795 QEVLRLRYGHvtwsycgtSSASAGRAVLDGKEKELKVVLEELESERGKGQALQAQQEEQQLRY---LQREGQSSRALEEL 1871
Cdd:TIGR02168 267 EKLEELRLEV--------SELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELeaqLEELESKLDELAEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1872 KLSLEKQLAQNNQLCVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELQKSLEAERSRSLELSEALqherlltEQ 1951
Cdd:TIGR02168 339 LAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARL-------ER 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1952 LSRNSQEACARQETQVQHALLRKLKAEKTRALELEAMLEKVQKQAAHTQqqleaqaqercvelRREKEVSGNLRSAVDAL 2031
Cdd:TIGR02168 412 LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLE--------------EALEELREELEEAEQAL 477
|
330 340
....*....|....*....|....*....
gi 1907073928 2032 RTHKQElgccLQREREKAAWLQAELEQLS 2060
Cdd:TIGR02168 478 DAAERE----LAQLQARLDSLERLQENLE 502
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
636-909 |
3.05e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 43.02 E-value: 3.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 636 QEALGKKEESEQQLILELEDLRKQLQQAaRELLTLKEEKSVLWNQKETLTNEAKEREAGSPVlpahkdTALQEEVESLTR 715
Cdd:COG5185 267 LEKLGENAESSKRLNENANNLIKQFENT-KEKIAEYTKSIDIKKATESLEEQLAAAEAEQEL------EESKRETETGIQ 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 716 VQWEsrkQSEKDRATLLSQMRVLESELEdQLVQHRGCAQLAEEVATLKQQLAALDKHL----RSQRQFMDDQAAEREHER 791
Cdd:COG5185 340 NLTA---EIEQGQESLTENLEAIKEEIE-NIVGEVELSKSSEELDSFKDTIESTKESLdeipQNQRGYAQEILATLEDTL 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 792 EEFQQEIQRLEGQLRQAARprppgprdsqcvqldeEVELLQEKLREKLDGFNELVIKKDFADQQLLIQE--EEIKRLEET 869
Cdd:COG5185 416 KAADRQIEELQRQIEQATS----------------SNEEVSKLLNELISELNKVMREADEESQSRLEEAydEINRSVRSK 479
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1907073928 870 NASIQRQMVQLQEELEKQKKSMEELKEKEILKQENMGDLL 909
Cdd:COG5185 480 KEDLNEELTQIESRVSTLKATLEKLRAKLERQLEGVRSKL 519
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
580-896 |
3.72e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.90 E-value: 3.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 580 EREFRHRNEEMAQAMQKQQELLERLREEsaakdrlaleLHTAKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQ 659
Cdd:pfam12128 599 EEELRERLDKAEEALQSAREKQAAAEEQ----------LVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDK 668
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 660 LQQAarelltLKEEKSVLWNQKETLTNEAKEREAGspvlpaHKDtALQEEvesltrvqwesRKQSEKDRATLLSQMRVLE 739
Cdd:pfam12128 669 KNKA------LAERKDSANERLNSLEAQLKQLDKK------HQA-WLEEQ-----------KEQKREARTEKQAYWQVVE 724
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 740 SELEDQLvqhrgcAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAARPRPPGPR-- 817
Cdd:pfam12128 725 GALDAQL------ALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRyf 798
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 818 DSQCVQLDEEVELLQEKLREKLDGFNELvikkdfaDQQLLIQEEEIKR----LEETNASIQRQMVQLQEELEKQKKSMEE 893
Cdd:pfam12128 799 DWYQETWLQRRPRLATQLSNIERAISEL-------QQQLARLIADTKLrrakLEMERKASEKQQVRLSENLRGLRCEMSK 871
|
...
gi 1907073928 894 LKE 896
Cdd:pfam12128 872 LAT 874
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
588-1000 |
4.88e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 4.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 588 EEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQL------------------ 649
Cdd:PRK03918 303 EEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYeeakakkeelerlkkrlt 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 650 ILELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEREA---------------GSPVLPAHKDTALQEEVESLT 714
Cdd:PRK03918 383 GLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKaieelkkakgkcpvcGRELTEEHRKELLEEYTAELK 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 715 RVQWESRKQSEKDRA----------------------TLLSQMRVLESEL-----EDQLVQHRGCAQLAEEVATLKQQLA 767
Cdd:PRK03918 463 RIEKELKEIEEKERKlrkelrelekvlkkeseliklkELAEQLKELEEKLkkynlEELEKKAEEYEKLKEKLIKLKGEIK 542
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 768 ALDKHLRSQRQFmDDQAAEREHEREEFQQEIQRLEGQLRQAARprppgprdsqcvqldEEVELLQEKLREKLDGFNELVI 847
Cdd:PRK03918 543 SLKKELEKLEEL-KKKLAELEKKLDELEEELAELLKELEELGF---------------ESVEELEERLKELEPFYNEYLE 606
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 848 KKDfADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEK-EILKQENMGDLLLTTVSR-SGLDEagcpm 925
Cdd:PRK03918 607 LKD-AEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKySEEEYEELREEYLELSRElAGLRA----- 680
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907073928 926 lpqgsSSRGPEAQPDVTERAL--LQHENEVVHRRNSEIDELKSLIENLQENQRQLQKDKAEEIEQLHEVIEKLQSEL 1000
Cdd:PRK03918 681 -----ELEELEKRREEIKKTLekLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKERALSKVGEIASEI 752
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
594-999 |
5.17e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.47 E-value: 5.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 594 MQKQ-QELLERLREESAAKDRLALElhtakgllegfkveKVDLQEALGKKEESeqqlILELEDLRKQLQQaarelltlke 672
Cdd:pfam01576 101 MQQHiQDLEEQLDEEEAARQKLQLE--------------KVTTEAKIKKLEED----ILLLEDQNSKLSK---------- 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 673 EKSVLWNQKETLTNEAKEREAGSPVLpahkdTALQEEVESLTRVQWESRKQSEKDRATLLSQMRVLESELEDQLVQHrgc 752
Cdd:pfam01576 153 ERKLLEERISEFTSNLAEEEEKAKSL-----SKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQI--- 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 753 AQLAEEVATLKQQLAALDKHLRSQRQFMDD---QAAEREHEREEFQQEIQRLEGQLRQAARPRppGPRDSQCVQLDEEVE 829
Cdd:pfam01576 225 AELQAQIAELRAQLAKKEEELQAALARLEEetaQKNNALKKIRELEAQISELQEDLESERAAR--NKAEKQRRDLGEELE 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 830 LLQEKLREKLDGFN---ELVIKKDFADQQLLIQEEEIKRLEETNASIQRQ-----MVQLQEELEKQKKSMEEL-KEKEIL 900
Cdd:pfam01576 303 ALKTELEDTLDTTAaqqELRSKREQEVTELKKALEEETRSHEAQLQEMRQkhtqaLEELTEQLEQAKRNKANLeKAKQAL 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 901 KQEN--MGDLLLTTVSRSGLDEAGCPMLP---QGSSSRGPEAQPDVTERAllqhenEVVHRRNSEIDELKSLIENLQENQ 975
Cdd:pfam01576 383 ESENaeLQAELRTLQQAKQDSEHKRKKLEgqlQELQARLSESERQRAELA------EKLSKLQSELESVSSLLNEAEGKN 456
|
410 420
....*....|....*....|....
gi 1907073928 976 RQLQKDKAEEIEQLHEVIEKLQSE 999
Cdd:pfam01576 457 IKLSKDVSSLESQLQDTQELLQEE 480
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
366-676 |
6.11e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 6.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 366 EMQKSQAELAKPQELQASQDQVAQVRDKVFLLNRELEECRAELEQLQQRRERENQEgttlicMLRADLELAQGEGKALRD 445
Cdd:COG4717 180 EELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENE------LEAAALEERLKEARLLLL 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 446 ALRRLLDLFGdtlkAAVTLKSRISERAGLLLdhedaadtsdARLAAAALGDMWSDEGLLEIDRTLPEGAETSSVCEISSH 525
Cdd:COG4717 254 IAAALLALLG----LGGSLLSLILTIAGVLF----------LVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEE 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 526 VCESFF--------ISPENTLDCEQPIRRVYQSLSTAVEGLLEMALDSSKQleEARQLHRCVEREFRHRNEEMAQAMQKQ 597
Cdd:COG4717 320 ELEELLaalglppdLSPEELLELLDRIEELQELLREAEELEEELQLEELEQ--EIAALLAEAGVEDEEELRAALEQAEEY 397
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907073928 598 QELLERLREesaAKDRLALELHTAKGLLEGFkvEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSV 676
Cdd:COG4717 398 QELKEELEE---LEEQLEELLGELEELLEAL--DEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGEL 471
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1675-1996 |
6.84e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.98 E-value: 6.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1675 SDRSSLLAEIQALRAQLrmthlqnqEKLQQLCAALTSTEARGSQREHQLRRQVELLAYKVEQEKCIANELQKTLSKEQET 1754
Cdd:TIGR02169 667 LFSRSEPAELQRLRERL--------EGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKER 738
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1755 ASDVRKRLVVEQNAVQDLKSELHACKQENTSLLESLDKVQQEV--LRLRYGHVTWSYCGT---------SSASAGRAVLD 1823
Cdd:TIGR02169 739 LEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALndLEARLSHSRIPEIQAelskleeevSRIEARLREIE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1824 GKEKELKVVLEELESERGKGQALQAQQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNNQLCVALKHERAAKDNLQK-- 1901
Cdd:TIGR02169 819 QKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAql 898
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 1902 --------ELQIEASRCEALLAQEKGQLSELQ---KSLEAERSRSLELSEALQHERLLTEQLSRNSQEACA------RQE 1964
Cdd:TIGR02169 899 relerkieELEAQIEKKRKRLSELKAKLEALEeelSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRAlepvnmLAI 978
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1907073928 1965 TQVQHALLR---------KLKAEKTRALELEAMLEKVQKQA 1996
Cdd:TIGR02169 979 QEYEEVLKRldelkekraKLEEERKAILERIEEYEKKKREV 1019
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
620-900 |
8.06e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 41.73 E-value: 8.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 620 TAKGLLEGFKVEKVDLQEALGK-KEESEQQLILELEDLRKQLQQAARELLTLKEEKSvlwnQKETLTNEAKEREAGSPVL 698
Cdd:pfam10174 436 TALTTLEEALSEKERIIERLKEqREREDRERLEELESLKKENKDLKEKVSALQPELT----EKESSLIDLKEHASSLASS 511
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 699 PAHKDT-------ALQEEVESLTRVQWESRK-----QSEKDRATLLSQMRVLESELEDQLVQHRGC-AQLAEEVATLKQq 765
Cdd:pfam10174 512 GLKKDSklksleiAVEQKKEECSKLENQLKKahnaeEAVRTNPEINDRIRLLEQEVARYKEESGKAqAEVERLLGILRE- 590
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 766 lAALDKHLRSQR---------QFMDDQAAEREHEREEFQQEIQRLEGQLRQAARPRPPGPRDSQCVQLDEEVELLqEKLR 836
Cdd:pfam10174 591 -VENEKNDKDKKiaelesltlRQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLADNSQQLQLEELMGAL-EKTR 668
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907073928 837 EKLDgfnelVIKKDFADQQLLIQEEEikrleetnasiqRQMVQLQEELEKQKKSMEELKEKEIL 900
Cdd:pfam10174 669 QELD-----ATKARLSSTQQSLAEKD------------GHLTNLRAERRKQLEEILEMKQEALL 715
|
|
| UPF0242 |
pfam06785 |
Uncharacterized protein family (UPF0242) N-terminus; This region includes an N-terminal ... |
829-903 |
8.83e-03 |
|
Uncharacterized protein family (UPF0242) N-terminus; This region includes an N-terminal transmembrane region and a C-terminal coiled-coil.
Pssm-ID: 429117 [Multi-domain] Cd Length: 194 Bit Score: 39.80 E-value: 8.83e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907073928 829 ELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEE-LKEKEILKQE 903
Cdd:pfam06785 79 ELDAEGFKILEETLEELQSEEERLEEELSQKEEELRRLTEENQQLQIQLQQISQDFAEFRLESEEqLAEKQLLINE 154
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
706-1005 |
9.42e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 9.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 706 LQEEVESLTRVqwESRKQSEKDRA-TLLSQMRVLESELEDQLVQ-HRGCAQLAEEVATLKQQLAALdkhlRSQRQFMDDQ 783
Cdd:TIGR02169 679 LRERLEGLKRE--LSSLQSELRRIeNRLDELSQELSDASRKIGEiEKEIEQLEQEEEKLKERLEEL----EEDLSSLEQE 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 784 AAEREHEREEFQQEIQRLE---GQLRQAARPRPPGPRDSQCVQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQE 860
Cdd:TIGR02169 753 IENVKSELKELEARIEELEedlHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLE 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073928 861 EEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQENMGDLlltTVSRSGLDEagcpmlpqgsSSRGPEAQPD 940
Cdd:TIGR02169 833 KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDL---ESRLGDLKK----------ERDELEAQLR 899
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907073928 941 VTERAlLQHENEVVHRRNSEIDELKSLIENLQENQRQLQKDKAEE---------IEQLHEVIEKLQSELSLMGP 1005
Cdd:TIGR02169 900 ELERK-IEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDeeipeeelsLEDVQAELQRVEEEIRALEP 972
|
|
| |
