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Conserved domains on  [gi|1907199368|ref|XP_036011061|]
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uncharacterized protein LOC638580 isoform X1 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Nop16 super family cl09664
Ribosome biogenesis protein Nop16; Nop16 is a protein involved in ribosome biogenesis.
 18-94 4.80e-08

Ribosome biogenesis protein Nop16; Nop16 is a protein involved in ribosome biogenesis.


The actual alignment was detected with superfamily member pfam09420:

Pssm-ID: 430599  Cd Length: 209  Bit Score: 49.25  E-value: 4.80e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907199368  18 VKAMEVDTEERPKDLVRKPCVVKDLEAEASLP-EKKGSTLSlDLLIDYVHYMVENHEEDDKAMARDKK-NYYQETPKRI 94
Cdd:pfam09420 125 LNELDSDEEDEEEEEPKKTEVVRELEEQAARPkAKKERHLS-KREVEWLERLVEKHGDDYEAMARDRKlNPMQQTEGDL 202
 
Name Accession Description Interval E-value
Nop16 pfam09420
Ribosome biogenesis protein Nop16; Nop16 is a protein involved in ribosome biogenesis.
 18-94 4.80e-08

Ribosome biogenesis protein Nop16; Nop16 is a protein involved in ribosome biogenesis.


Pssm-ID: 430599  Cd Length: 209  Bit Score: 49.25  E-value: 4.80e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907199368  18 VKAMEVDTEERPKDLVRKPCVVKDLEAEASLP-EKKGSTLSlDLLIDYVHYMVENHEEDDKAMARDKK-NYYQETPKRI 94
Cdd:pfam09420 125 LNELDSDEEDEEEEEPKKTEVVRELEEQAARPkAKKERHLS-KREVEWLERLVEKHGDDYEAMARDRKlNPMQQTEGDL 202
 
Name Accession Description Interval E-value
Nop16 pfam09420
Ribosome biogenesis protein Nop16; Nop16 is a protein involved in ribosome biogenesis.
 18-94 4.80e-08

Ribosome biogenesis protein Nop16; Nop16 is a protein involved in ribosome biogenesis.


Pssm-ID: 430599  Cd Length: 209  Bit Score: 49.25  E-value: 4.80e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907199368  18 VKAMEVDTEERPKDLVRKPCVVKDLEAEASLP-EKKGSTLSlDLLIDYVHYMVENHEEDDKAMARDKK-NYYQETPKRI 94
Cdd:pfam09420 125 LNELDSDEEDEEEEEPKKTEVVRELEEQAARPkAKKERHLS-KREVEWLERLVEKHGDDYEAMARDRKlNPMQQTEGDL 202
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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