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Conserved domains on  [gi|1863329510|ref|XP_035025300|]
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TSC22 domain family protein 2 isoform X2 [Hippoglossus stenolepis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ZIP_TSC22D-like super family cl40461
leucine zipper found in the TSC22 domain leucine zipper transcription factors, c-Myc-binding ...
 630-690 4.64e-33

leucine zipper found in the TSC22 domain leucine zipper transcription factors, c-Myc-binding protein, and similar proteins; The family includes TGF-beta-stimulated clone-22 domain (TSC22D) leucine zipper transcription factors, TSC22D1-4, as well as c-Myc-binding protein (MycBP). TSC22D proteins have diverse physiological functions, including cell growth, development, homeostasis, and immune regulation. MycBP, also called associate of Myc 1 (AMY-1), is a novel c-Myc binding protein that may control the transcriptional activity of Myc. It stimulates the activation of E box-dependent transcription by Myc. Members of this family contain a conserved leucine zipper (ZIP) domain. Its first helix is not basic and does not contain the consensus sequence, NXX(A)(A)XX(C/S)R, found in most basic region/leucine zipper (bZIP) proteins. In the bZIP family of transcription factors, the leucine zipper acts as a dimerization domain and the upstream basic region as a DNA-binding domain. However, DNA-binding capability of TSC22D family proteins is not obvious, due to the lack of the basic region found in the original bZIP DNA-binding domains. Similar to bZIP, ZIP forms homo- and heterodimers, resulting in many dimers that may have different effects on transcription.


The actual alignment was detected with superfamily member cd21939:

Pssm-ID: 424092  Cd Length: 63  Bit Score: 121.23  E-value: 4.64e-33
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1863329510 630 AMDLVKSHLMYAVREEVEVLKEQIKELFERNSVLERENAVLKSLANSEQLSQLSTQPAASS 690
Cdd:cd21939     1 AMDLVKSHLMYAVREEVEVLKEQIKELIERNSLLERENALLKSLSNNDQLSQLSTQQGNPS 61
PPE super family cl35037
PPE-repeat protein [Function unknown];
281-516 7.31e-04

PPE-repeat protein [Function unknown];


The actual alignment was detected with superfamily member COG5651:

Pssm-ID: 444372 [Multi-domain]  Cd Length: 385  Bit Score: 42.57  E-value: 7.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863329510 281 QVVSASAMQSA-FSSS-----KPTAVPAQQTVGGLQPSAPQSVLPVGLNGLPQSGViiqkTSIMPPTAQPSTYSPPqqqh 354
Cdd:COG5651   155 AAASAAAVALTpFTQPpptitNPGGLLGAQNAGSGNTSSNPGFANLGLTGLNQVGI----GGLNSGSGPIGLNSGP---- 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863329510 355 qLPIGHPLTGQSSGLLQNQTEYYQQQQTASMQPGLSTSQSLPVSGLSAGLQPGSQGPASVIPPTSGGAPVPSQVGDLVGA 434
Cdd:COG5651   227 -GNTGFAGTGAAAGAAAAAAAAAAAAGAGASAALASLAATLLNASSLGLAATAASSAATNLGLAGSPLGLAGGGAGAAAA 305

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863329510 435 GGGSLTTGQPAPGLLqqQTVGMGGVGGSILVGGSILQQQTVSPYAPAGQPQPHGLHPASSSVQNVPVMAVSSSVPPTVPA 514
Cdd:COG5651   306 TGLGLGAGGAAGAAG--ATGAGAALGAGAAAAAAGAAAGAGAAAAAAAGGAGGGGGGALGAGGGGGSAGAAAGAASGGGA 383


                  ..
gi 1863329510 515 AV 516
Cdd:COG5651   384 AA 385
 
Name Accession Description Interval E-value
ZIP_TSC22D2 cd21939
leucine zipper domain found in TSC22 domain family protein 2; TSC22 domain family protein 2 ...
 630-690 4.64e-33

leucine zipper domain found in TSC22 domain family protein 2; TSC22 domain family protein 2 (TSC22D2), also called transforming growth factor beta-stimulated clone 22 domain family member 2, or TSC22-related-inducible leucine zipper protein 4 (TILZ4), may participate in the regulation of cell growth. It interacts with pyruvate kinase isoform M2 (PKM2) and WD repeat domain 77 (WDR77). The model corresponds to the conserved leucine zipper (ZIP) domain located at the C-terminus of TSC22D2. Its first helix is not basic and does not contain the consensus sequence, NXX(A)(A)XX(C/S)R, found in most basic region/leucine zipper (bZIP) proteins. Thus, the DNA-binding capability of the ZIP domain is not obvious. Similar to bZIP, ZIP forms homo- and heterodimers, resulting in many dimers that may have different effects on transcription.


Pssm-ID: 409279  Cd Length: 63  Bit Score: 121.23  E-value: 4.64e-33
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1863329510 630 AMDLVKSHLMYAVREEVEVLKEQIKELFERNSVLERENAVLKSLANSEQLSQLSTQPAASS 690
Cdd:cd21939     1 AMDLVKSHLMYAVREEVEVLKEQIKELIERNSLLERENALLKSLSNNDQLSQLSTQQGNPS 61
TSC22 pfam01166
TSC-22/dip/bun family;
631-685 1.44e-28

TSC-22/dip/bun family;


Pssm-ID: 460093  Cd Length: 57  Bit Score: 108.17  E-value: 1.44e-28
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1863329510 631 MDLVKSHLMYAVREEVEVLKEQIKELFERNSVLERENAVLKSLANSEQLSQLSTQ 685
Cdd:pfam01166   1 MDLVKSHLMYAVREEVEVLKEQIKELEERNSQLEEENSILRANASPEQLEQLSSQ 55
PPE COG5651
PPE-repeat protein [Function unknown];
281-516 7.31e-04

PPE-repeat protein [Function unknown];


Pssm-ID: 444372 [Multi-domain]  Cd Length: 385  Bit Score: 42.57  E-value: 7.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863329510 281 QVVSASAMQSA-FSSS-----KPTAVPAQQTVGGLQPSAPQSVLPVGLNGLPQSGViiqkTSIMPPTAQPSTYSPPqqqh 354
Cdd:COG5651   155 AAASAAAVALTpFTQPpptitNPGGLLGAQNAGSGNTSSNPGFANLGLTGLNQVGI----GGLNSGSGPIGLNSGP---- 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863329510 355 qLPIGHPLTGQSSGLLQNQTEYYQQQQTASMQPGLSTSQSLPVSGLSAGLQPGSQGPASVIPPTSGGAPVPSQVGDLVGA 434
Cdd:COG5651   227 -GNTGFAGTGAAAGAAAAAAAAAAAAGAGASAALASLAATLLNASSLGLAATAASSAATNLGLAGSPLGLAGGGAGAAAA 305

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863329510 435 GGGSLTTGQPAPGLLqqQTVGMGGVGGSILVGGSILQQQTVSPYAPAGQPQPHGLHPASSSVQNVPVMAVSSSVPPTVPA 514
Cdd:COG5651   306 TGLGLGAGGAAGAAG--ATGAGAALGAGAAAAAAGAAAGAGAAAAAAAGGAGGGGGGALGAGGGGGSAGAAAGAASGGGA 383


                  ..
gi 1863329510 515 AV 516
Cdd:COG5651   384 AA 385
PHA03247 PHA03247
large tegument protein UL36; Provisional
 396-598 1.23e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.62  E-value: 1.23e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863329510  396 PVSGLSAGLQPGSQGPASVIPPTSGGAPVPSQVGDLVGAGGGSLTTGQPAPGLLQQQTVGMGGVGGSILVGGSILQQQTV 475
Cdd:PHA03247  2691 TVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPA 2770

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863329510  476 SPYAPAGQPQPHGLHPASSSVQnvpvMAVSSSVPPTVPAAVPSTSSAAMPNVTASSLPLGLIPhNKTSLVLGAQGLPAPG 555
Cdd:PHA03247  2771 PPAAPAAGPPRRLTRPAVASLS----ESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLP-PPTSAQPTAPPPPPGP 2845

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*.
gi 1863329510  556 FGQVE--GGGRKSEGLINLQSPVVSG-KEPVKPLMPQSLQLTTPAV 598
Cdd:PHA03247  2846 PPPSLplGGSVAPGGDVRRRPPSRSPaAKPAAPARPPVRRLARPAV 2891
 
Name Accession Description Interval E-value
ZIP_TSC22D2 cd21939
leucine zipper domain found in TSC22 domain family protein 2; TSC22 domain family protein 2 ...
 630-690 4.64e-33

leucine zipper domain found in TSC22 domain family protein 2; TSC22 domain family protein 2 (TSC22D2), also called transforming growth factor beta-stimulated clone 22 domain family member 2, or TSC22-related-inducible leucine zipper protein 4 (TILZ4), may participate in the regulation of cell growth. It interacts with pyruvate kinase isoform M2 (PKM2) and WD repeat domain 77 (WDR77). The model corresponds to the conserved leucine zipper (ZIP) domain located at the C-terminus of TSC22D2. Its first helix is not basic and does not contain the consensus sequence, NXX(A)(A)XX(C/S)R, found in most basic region/leucine zipper (bZIP) proteins. Thus, the DNA-binding capability of the ZIP domain is not obvious. Similar to bZIP, ZIP forms homo- and heterodimers, resulting in many dimers that may have different effects on transcription.


Pssm-ID: 409279  Cd Length: 63  Bit Score: 121.23  E-value: 4.64e-33
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1863329510 630 AMDLVKSHLMYAVREEVEVLKEQIKELFERNSVLERENAVLKSLANSEQLSQLSTQPAASS 690
Cdd:cd21939     1 AMDLVKSHLMYAVREEVEVLKEQIKELIERNSLLERENALLKSLSNNDQLSQLSTQQGNPS 61
ZIP_TSC22D4 cd21941
leucine zipper domain found in TSC22 domain family protein 4; TSC22 domain family protein 4 ...
 621-695 5.27e-30

leucine zipper domain found in TSC22 domain family protein 4; TSC22 domain family protein 4 (TSC22D4), also called TSC22-related-inducible leucine zipper protein 2 (TILZ2), or Tsc-22-like protein THG-1, is a transcriptional repressor that acts as a molecular determinant of insulin signalling and glucose handling. It also functions in hepatic lipid handling by regulating hepatic very-low-density-lipoprotein (VLDL) release and lipogenic gene expression. This model corresponds to the conserved leucine zipper (ZIP) domain located at the C-terminus of TSC22D4. Its first helix is not basic and does not contain the consensus sequence, NXX(A)(A)XX(C/S)R, found in most basic region/leucine zipper (bZIP) proteins. Thus, the DNA-binding capability of the ZIP domain is not obvious. Similar to bZIP, ZIP forms homo- and heterodimers, resulting in many dimers that may have different effects on transcription.


Pssm-ID: 409281  Cd Length: 74  Bit Score: 113.11  E-value: 5.27e-30
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1863329510 621 VAIDNKIEQAMDLVKSHLMYAVREEVEVLKEQIKELFERNSVLERENAVLKSLANSEQLSQLstQPAASSGATPP 695
Cdd:cd21941     1 VAIDNKIEQAMDLVKSHLLFAVREEVEVLKEQIKELSERNAALEQENSLLRSLATPQQLSRL--QSRQPTSRKPA 73
TSC22 pfam01166
TSC-22/dip/bun family;
631-685 1.44e-28

TSC-22/dip/bun family;


Pssm-ID: 460093  Cd Length: 57  Bit Score: 108.17  E-value: 1.44e-28
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1863329510 631 MDLVKSHLMYAVREEVEVLKEQIKELFERNSVLERENAVLKSLANSEQLSQLSTQ 685
Cdd:pfam01166   1 MDLVKSHLMYAVREEVEVLKEQIKELEERNSQLEEENSILRANASPEQLEQLSSQ 55
ZIP_TSC22D cd21936
leucine zipper domain found in the TSC22 domain family of leucine zipper transcription factors; ...
 630-678 1.93e-26

leucine zipper domain found in the TSC22 domain family of leucine zipper transcription factors; The TGF-beta-stimulated clone-22 domain (TSC22D) family includes TSC22D1-4 and similar proteins. They have diverse physiological functions, including cell growth, development, homeostasis, and immune regulation. All family members contain a conserved leucine zipper (ZIP) domain located at the C-terminus. Its first helix is not basic and does not contain the consensus sequence, NXX(A)(A)XX(C/S)R, found in most basic region/leucine zipper (bZIP) proteins. In the bZIP family of transcription factors, the leucine zipper acts as a dimerization domain and the upstream basic region as a DNA-binding domain. However, DNA-binding capability of TSC22D family proteins is not obvious, due to the lack of the basic region found in the original bZIP DNA-binding domains. Similar to bZIP, ZIP forms homo- and heterodimers, resulting in many dimers that may have different effects on transcription.


Pssm-ID: 409276  Cd Length: 49  Bit Score: 101.87  E-value: 1.93e-26
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1863329510 630 AMDLVKSHLMYAVREEVEVLKEQIKELFERNSVLERENAVLKSLANSEQ 678
Cdd:cd21936     1 AMDLVKSHLMFAVREEVDVLKEQIAELEERISQLERENSLLRSNAPPEV 49
ZIP_TSC22D1 cd21938
leucine zipper domain found in TSC22 domain family protein 1; TSC22 domain family protein 1 ...
 626-698 1.22e-25

leucine zipper domain found in TSC22 domain family protein 1; TSC22 domain family protein 1 (TSC22D1) is also called cerebral protein 2, regulatory protein TSC-22, TGFB-stimulated clone 22, or transforming growth factor beta-1-induced transcript 4 protein (TGFB1I4). It is a transcriptional repressor that was reported to be present in both the cytoplasmic and the nuclear fraction. It is activated by transcription growth factor-beta1 and other growth factors of osteoblastic cells. TSC22D1 acts on the C-type natriuretic peptide (CNP) promoter. It enhances c-Myc-mediated activation of the telomerase reverse transcriptase (TERT) promoter. This model corresponds to the conserved leucine zipper (ZIP) domain located at the C-terminus of TSC22D1. Its first helix is not basic and does not contain the consensus sequence, NXX(A)(A)XX(C/S)R, found in most basic region/leucine zipper (bZIP) proteins. Thus, the DNA-binding capability of the ZIP domain is not obvious. Similar to bZIP, ZIP forms homo- and heterodimers, resulting in many dimers that may have different effects on transcription.


Pssm-ID: 409278  Cd Length: 79  Bit Score: 100.99  E-value: 1.22e-25
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1863329510 626 KIEQAMDLVKSHLMYAVREEVEVLKEQIKELFERNSVLERENAVLKSLANSEQLSQLSTQ-PAASSGATPPQQG 698
Cdd:cd21938     1 KIEQAMDLVKSHLMYAVREEVEVLKEQIKELIEKNSQLEQENNLLKTLASPEQLAQFQAQlQTGSPPSSSQPPG 74
ZIP_TSC22D3 cd21940
leucine zipper domain found in TSC22 domain family protein 3; TSC22 domain family protein 3 ...
 630-696 8.19e-24

leucine zipper domain found in TSC22 domain family protein 3; TSC22 domain family protein 3 (TSC22D3) is also called DSIP-immunoreactive peptide, protein DIP, delta sleep-inducing peptide immunoreactor, glucocorticoid-induced leucine zipper protein (GILZ), TSC-22-like protein, or TSC-22-related protein (TSC-22R). It protects T-cells from IL2 deprivation-induced apoptosis through the inhibition of FOXO3A transcriptional activity that leads to the down-regulation of the pro-apoptotic factor BCL2L11. In macrophages, it plays a role in the anti-inflammatory and immunosuppressive effects of glucocorticoids and IL10. In T-cells, it inhibits anti-CD3-induced NFKB1 nuclear translocation. TSC22D3 contains a leucine zipper motif, a Pro/Glu rich domain, and three potential phosphorylation sites. This model corresponds to the leucine zipper (ZIP) domain. Its first helix is not basic and does not contain the consensus sequence, NXX(A)(A)XX(C/S)R, found in most basic region/leucine zipper (bZIP) proteins. Thus, the DNA-binding capability of the ZIP domain is not obvious. Similar to bZIP, ZIP forms homo- and heterodimers, resulting in many dimers that may have different effects on transcription.


Pssm-ID: 409280  Cd Length: 81  Bit Score: 95.79  E-value: 8.19e-24
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1863329510 630 AMDLVKSHLMYAVREEVEVLKEQIKELFERNSVLERENAVLKSLANSEQLSQLstQPAASSGATPPQ 696
Cdd:cd21940     1 AMDLVKNHLMYAVREEVEVLKEQIKELVEKNSQLERENSLLKTLASPEQLEKF--QSRLPSEETAPE 65
ZIP_TSC22D-like cd21927
leucine zipper found in the TSC22 domain leucine zipper transcription factors, c-Myc-binding ...
 631-678 2.49e-17

leucine zipper found in the TSC22 domain leucine zipper transcription factors, c-Myc-binding protein, and similar proteins; The family includes TGF-beta-stimulated clone-22 domain (TSC22D) leucine zipper transcription factors, TSC22D1-4, as well as c-Myc-binding protein (MycBP). TSC22D proteins have diverse physiological functions, including cell growth, development, homeostasis, and immune regulation. MycBP, also called associate of Myc 1 (AMY-1), is a novel c-Myc binding protein that may control the transcriptional activity of Myc. It stimulates the activation of E box-dependent transcription by Myc. Members of this family contain a conserved leucine zipper (ZIP) domain. Its first helix is not basic and does not contain the consensus sequence, NXX(A)(A)XX(C/S)R, found in most basic region/leucine zipper (bZIP) proteins. In the bZIP family of transcription factors, the leucine zipper acts as a dimerization domain and the upstream basic region as a DNA-binding domain. However, DNA-binding capability of TSC22D family proteins is not obvious, due to the lack of the basic region found in the original bZIP DNA-binding domains. Similar to bZIP, ZIP forms homo- and heterodimers, resulting in many dimers that may have different effects on transcription.


Pssm-ID: 409275  Cd Length: 51  Bit Score: 76.40  E-value: 2.49e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1863329510 631 MDLVKSHLMYAVREE--VEVLKEQIKELFERNSVLERENAVLKSLANSEQ 678
Cdd:cd21927     2 LDFLKHHLGAATPENpeIELLRLELAEMKEKYEAIVEENKKLKAKLAQYE 51
ZIP_MycBP-like cd21937
leucine zipper domain found in c-Myc-binding protein and similar proteins; MycBP, also called ...
 630-682 4.06e-05

leucine zipper domain found in c-Myc-binding protein and similar proteins; MycBP, also called associate of Myc 1 (AMY-1), is a novel c-Myc binding protein that may control the transcriptional activity of Myc. It stimulates the activation of E box-dependent transcription by Myc. This model corresponds to the conserved region that shows high sequence similarity with the leucine zipper (ZIP) domain located at the C-terminus of TGF-beta-stimulated clone-22 domain (TSC22D) family transcription factors. The first helix of ZIP is not basic and does not contain the consensus sequence, NXX(A)(A)XX(C/S)R, found in most basic region/leucine zipper (bZIP) proteins. Thus, the DNA-binding capability of the ZIP domain is not obvious. Similar to bZIP, ZIP forms homo- and heterodimers, resulting in many dimers that may have different effects on transcription.


Pssm-ID: 409277 [Multi-domain]  Cd Length: 53  Bit Score: 41.77  E-value: 4.06e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1863329510 630 AMDLVKSHL--MYAVREEVEVLKEQIKELFERNSVLERENAVLKSlanseQLSQL 682
Cdd:cd21937     3 ALDFIKQHLgaPGPEDADVEALRLENEELKQKNEELEEENKELKA-----KLQQY 52
PPE COG5651
PPE-repeat protein [Function unknown];
281-516 7.31e-04

PPE-repeat protein [Function unknown];


Pssm-ID: 444372 [Multi-domain]  Cd Length: 385  Bit Score: 42.57  E-value: 7.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863329510 281 QVVSASAMQSA-FSSS-----KPTAVPAQQTVGGLQPSAPQSVLPVGLNGLPQSGViiqkTSIMPPTAQPSTYSPPqqqh 354
Cdd:COG5651   155 AAASAAAVALTpFTQPpptitNPGGLLGAQNAGSGNTSSNPGFANLGLTGLNQVGI----GGLNSGSGPIGLNSGP---- 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863329510 355 qLPIGHPLTGQSSGLLQNQTEYYQQQQTASMQPGLSTSQSLPVSGLSAGLQPGSQGPASVIPPTSGGAPVPSQVGDLVGA 434
Cdd:COG5651   227 -GNTGFAGTGAAAGAAAAAAAAAAAAGAGASAALASLAATLLNASSLGLAATAASSAATNLGLAGSPLGLAGGGAGAAAA 305

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863329510 435 GGGSLTTGQPAPGLLqqQTVGMGGVGGSILVGGSILQQQTVSPYAPAGQPQPHGLHPASSSVQNVPVMAVSSSVPPTVPA 514
Cdd:COG5651   306 TGLGLGAGGAAGAAG--ATGAGAALGAGAAAAAAGAAAGAGAAAAAAAGGAGGGGGGALGAGGGGGSAGAAAGAASGGGA 383


                  ..
gi 1863329510 515 AV 516
Cdd:COG5651   384 AA 385
PHA03247 PHA03247
large tegument protein UL36; Provisional
 396-598 1.23e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.62  E-value: 1.23e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863329510  396 PVSGLSAGLQPGSQGPASVIPPTSGGAPVPSQVGDLVGAGGGSLTTGQPAPGLLQQQTVGMGGVGGSILVGGSILQQQTV 475
Cdd:PHA03247  2691 TVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPA 2770

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1863329510  476 SPYAPAGQPQPHGLHPASSSVQnvpvMAVSSSVPPTVPAAVPSTSSAAMPNVTASSLPLGLIPhNKTSLVLGAQGLPAPG 555
Cdd:PHA03247  2771 PPAAPAAGPPRRLTRPAVASLS----ESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLP-PPTSAQPTAPPPPPGP 2845

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*.
gi 1863329510  556 FGQVE--GGGRKSEGLINLQSPVVSG-KEPVKPLMPQSLQLTTPAV 598
Cdd:PHA03247  2846 PPPSLplGGSVAPGGDVRRRPPSRSPaAKPAAPARPPVRRLARPAV 2891
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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