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Conserved domains on  [gi|1847864198|ref|XP_034672569|]
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uncharacterized protein LOC117904165 [Vitis riparia]

Protein Classification

DUF4283 and zf-CCHC_4 domain-containing protein( domain architecture ID 10624279)

DUF4283 and zf-CCHC_4 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4283 pfam14111
Domain of unknown function (DUF4283); This domain family is found in plants, and is ...
 27-169 4.60e-45

Domain of unknown function (DUF4283); This domain family is found in plants, and is approximately 100 amino acids in length. Considering the very diverse range of other domains it is associated with it is possible that this domain is a binding/guiding region. There are two highly conserved tryptophan residues.


:

Pssm-ID: 464086  Cd Length: 145  Bit Score: 151.65  E-value: 4.60e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1847864198  27 STTQSFDLCLIGRFlTDRMINFNAMKHRLASVWRPGKGICIKEINKQLFLFQFFHIVDLKRVLEGGPWTFDNHLLILHHL 106
Cdd:pfam14111   4 ELKEELKLCLVGRF-TGKVPSLGAIRRVLARQWGLGGGVKIKELGDGYFLFRFPSEEDLERVLSKGPWLIGNVPMLLQRW 82

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1847864198 107 KQGAIPTAIPLFHVMFWIQVYDIPVGSMSLNVGKQLGNFIGKFVDYDINNNAGLWRNFMRIRV 169
Cdd:pfam14111  83 SPDFKPTPEELTTIPIWVQLPGLPLHLWSREVLSKIASAVGKPLETDENTENKTRLSFARVKV 145
zf-CCHC_4 pfam14392
Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following ...
 171-219 3.36e-21

Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. This particular family is found in plant proteins.


:

Pssm-ID: 433930  Cd Length: 49  Bit Score: 85.46  E-value: 3.36e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1847864198 171 LDVRQPLKRWKKIRKPQGEWSLVHFKYERLSTFCYLCGMLGHSEKFCDK 219
Cdd:pfam14392   1 IDITKPLRFFRRIRFPSGEWALIRFKYERLRRFCFICGRLGHSDKFCPK 49
 
Name Accession Description Interval E-value
DUF4283 pfam14111
Domain of unknown function (DUF4283); This domain family is found in plants, and is ...
 27-169 4.60e-45

Domain of unknown function (DUF4283); This domain family is found in plants, and is approximately 100 amino acids in length. Considering the very diverse range of other domains it is associated with it is possible that this domain is a binding/guiding region. There are two highly conserved tryptophan residues.


Pssm-ID: 464086  Cd Length: 145  Bit Score: 151.65  E-value: 4.60e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1847864198  27 STTQSFDLCLIGRFlTDRMINFNAMKHRLASVWRPGKGICIKEINKQLFLFQFFHIVDLKRVLEGGPWTFDNHLLILHHL 106
Cdd:pfam14111   4 ELKEELKLCLVGRF-TGKVPSLGAIRRVLARQWGLGGGVKIKELGDGYFLFRFPSEEDLERVLSKGPWLIGNVPMLLQRW 82

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1847864198 107 KQGAIPTAIPLFHVMFWIQVYDIPVGSMSLNVGKQLGNFIGKFVDYDINNNAGLWRNFMRIRV 169
Cdd:pfam14111  83 SPDFKPTPEELTTIPIWVQLPGLPLHLWSREVLSKIASAVGKPLETDENTENKTRLSFARVKV 145
zf-CCHC_4 pfam14392
Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following ...
 171-219 3.36e-21

Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. This particular family is found in plant proteins.


Pssm-ID: 433930  Cd Length: 49  Bit Score: 85.46  E-value: 3.36e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1847864198 171 LDVRQPLKRWKKIRKPQGEWSLVHFKYERLSTFCYLCGMLGHSEKFCDK 219
Cdd:pfam14392   1 IDITKPLRFFRRIRFPSGEWALIRFKYERLRRFCFICGRLGHSDKFCPK 49
 
Name Accession Description Interval E-value
DUF4283 pfam14111
Domain of unknown function (DUF4283); This domain family is found in plants, and is ...
 27-169 4.60e-45

Domain of unknown function (DUF4283); This domain family is found in plants, and is approximately 100 amino acids in length. Considering the very diverse range of other domains it is associated with it is possible that this domain is a binding/guiding region. There are two highly conserved tryptophan residues.


Pssm-ID: 464086  Cd Length: 145  Bit Score: 151.65  E-value: 4.60e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1847864198  27 STTQSFDLCLIGRFlTDRMINFNAMKHRLASVWRPGKGICIKEINKQLFLFQFFHIVDLKRVLEGGPWTFDNHLLILHHL 106
Cdd:pfam14111   4 ELKEELKLCLVGRF-TGKVPSLGAIRRVLARQWGLGGGVKIKELGDGYFLFRFPSEEDLERVLSKGPWLIGNVPMLLQRW 82

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1847864198 107 KQGAIPTAIPLFHVMFWIQVYDIPVGSMSLNVGKQLGNFIGKFVDYDINNNAGLWRNFMRIRV 169
Cdd:pfam14111  83 SPDFKPTPEELTTIPIWVQLPGLPLHLWSREVLSKIASAVGKPLETDENTENKTRLSFARVKV 145
zf-CCHC_4 pfam14392
Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following ...
 171-219 3.36e-21

Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. This particular family is found in plant proteins.


Pssm-ID: 433930  Cd Length: 49  Bit Score: 85.46  E-value: 3.36e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1847864198 171 LDVRQPLKRWKKIRKPQGEWSLVHFKYERLSTFCYLCGMLGHSEKFCDK 219
Cdd:pfam14392   1 IDITKPLRFFRRIRFPSGEWALIRFKYERLRRFCFICGRLGHSDKFCPK 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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