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Conserved domains on  [gi|1839694148|ref|XP_034065617|]
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nucleolar and coiled-body phosphoprotein 1 isoform X6 [Gymnodraco acuticeps]

Protein Classification

nucleolar and coiled-body phosphoprotein 1 family protein( domain architecture ID 10523427)

nucleolar and coiled-body phosphoprotein 1 (NOLC1) family protein; similar to mammalian NOLC1 (also known as Nopp140) which may participate in the regulation of rRNA transcription by interacting with the largest subunit of RNA polymerase I, and to Saccharomyces cerevisiae suppressor protein Srp40 which is a weak suppressor of a mutant of the subunit AC40 of DNA dependent RNA polymerase I and III; may be a chaperone involved in nucleocytoplasmic transport

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SRP40_C pfam05022
SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae ...
 1177-1250 1.85e-32

SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae SRP40 protein and its homologs. SRP40/nopp40 is a chaperone involved in nucleocytoplasmic transport. SRP40 is also a suppressor of mutant AC40 subunit of RNA polymerase I and III.


:

Pssm-ID: 461525  Cd Length: 75  Bit Score: 120.72  E-value: 1.85e-32
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1839694148 1177 PFRRIREEEVAV--DPRLQDNSFDAKfGSNGDWGQKANDTLRFTKGKSFRHEKTKKKRGSYRGGAINSTSVNSIKF 1250
Cdd:pfam05022    1 PFQRVDPEDVVVfaDPRLADNSYEAK-GAEDDYGEKANEDLIVTRGKGFRKEKNKKKRGSYRGGAIDTNSVNSIKF 75
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 602-900 3.48e-09

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 61.88  E-value: 3.48e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  602 KPAKPATPAKAKSATpAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKakPATPVAKPAAAAESSSDSSSede 681
Cdd:PHA03247  2682 RPRRRAARPTVGSLT-SLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPAL--PAAPAPPAVPAGPATPGGPA--- 2755

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  682 epAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPVAKPaa 761
Cdd:PHA03247  2756 --RPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPP-- 2831

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  762 aaesssdSSSEDEEPAKAKPATPAKAKPATPVAkPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPTTPA 841
Cdd:PHA03247  2832 -------TSAQPTAPPPPPGPPPPSLPLGGSVA-PGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPD 2903

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1839694148  842 KAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPATPVAKP 900
Cdd:PHA03247  2904 QPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQP 2962
 
Name Accession Description Interval E-value
SRP40_C pfam05022
SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae ...
 1177-1250 1.85e-32

SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae SRP40 protein and its homologs. SRP40/nopp40 is a chaperone involved in nucleocytoplasmic transport. SRP40 is also a suppressor of mutant AC40 subunit of RNA polymerase I and III.


Pssm-ID: 461525  Cd Length: 75  Bit Score: 120.72  E-value: 1.85e-32
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1839694148 1177 PFRRIREEEVAV--DPRLQDNSFDAKfGSNGDWGQKANDTLRFTKGKSFRHEKTKKKRGSYRGGAINSTSVNSIKF 1250
Cdd:pfam05022    1 PFQRVDPEDVVVfaDPRLADNSYEAK-GAEDDYGEKANEDLIVTRGKGFRKEKNKKKRGSYRGGAIDTNSVNSIKF 75
PHA03247 PHA03247
large tegument protein UL36; Provisional
 602-900 3.48e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 61.88  E-value: 3.48e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  602 KPAKPATPAKAKSATpAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKakPATPVAKPAAAAESSSDSSSede 681
Cdd:PHA03247  2682 RPRRRAARPTVGSLT-SLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPAL--PAAPAPPAVPAGPATPGGPA--- 2755

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  682 epAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPVAKPaa 761
Cdd:PHA03247  2756 --RPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPP-- 2831

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  762 aaesssdSSSEDEEPAKAKPATPAKAKPATPVAkPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPTTPA 841
Cdd:PHA03247  2832 -------TSAQPTAPPPPPGPPPPSLPLGGSVA-PGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPD 2903

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1839694148  842 KAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPATPVAKP 900
Cdd:PHA03247  2904 QPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQP 2962
 
Name Accession Description Interval E-value
SRP40_C pfam05022
SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae ...
 1177-1250 1.85e-32

SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae SRP40 protein and its homologs. SRP40/nopp40 is a chaperone involved in nucleocytoplasmic transport. SRP40 is also a suppressor of mutant AC40 subunit of RNA polymerase I and III.


Pssm-ID: 461525  Cd Length: 75  Bit Score: 120.72  E-value: 1.85e-32
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1839694148 1177 PFRRIREEEVAV--DPRLQDNSFDAKfGSNGDWGQKANDTLRFTKGKSFRHEKTKKKRGSYRGGAINSTSVNSIKF 1250
Cdd:pfam05022    1 PFQRVDPEDVVVfaDPRLADNSYEAK-GAEDDYGEKANEDLIVTRGKGFRKEKNKKKRGSYRGGAIDTNSVNSIKF 75
PHA03247 PHA03247
large tegument protein UL36; Provisional
 602-900 3.48e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 61.88  E-value: 3.48e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  602 KPAKPATPAKAKSATpAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKakPATPVAKPAAAAESSSDSSSede 681
Cdd:PHA03247  2682 RPRRRAARPTVGSLT-SLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPAL--PAAPAPPAVPAGPATPGGPA--- 2755

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  682 epAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPVAKPaa 761
Cdd:PHA03247  2756 --RPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPP-- 2831

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  762 aaesssdSSSEDEEPAKAKPATPAKAKPATPVAkPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPTTPA 841
Cdd:PHA03247  2832 -------TSAQPTAPPPPPGPPPPSLPLGGSVA-PGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPD 2903

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1839694148  842 KAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPATPVAKP 900
Cdd:PHA03247  2904 QPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQP 2962
PHA03247 PHA03247
large tegument protein UL36; Provisional
 602-1043 2.07e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 55.71  E-value: 2.07e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  602 KPAKPATPAKAK--SATPAKAKPATPVAKPAAAAEsssdsssedeePAKAKPATPAKAKPATPVAKPAAAAESSSDSSSE 679
Cdd:PHA03247  2576 RPSEPAVTSRARrpDAPPQSARPRAPVDDRGDPRG-----------PAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPP 2644

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  680 DEEPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPVAKP 759
Cdd:PHA03247  2645 TVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPG 2724

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  760 AAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKP--ATPAKAKPATPAKAKP 837
Cdd:PHA03247  2725 PAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPavASLSESRESLPSPWDP 2804

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  838 TTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATP---------------AKAKPATPAKAKPATPVAKPAA 902
Cdd:PHA03247  2805 ADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPpslplggsvapggdvRRRPPSRSPAAKPAAPARPPVR 2884

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  903 AAESSSDSSSEDEEPAKAKPAAKPATPASKPATPTAKAAAAESSSESSSEDEEPAKAKPAisAKAKPTTPAAKPAAAAES 982
Cdd:PHA03247  2885 RLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLA--PTTDPAGAGEPSGAVPQP 2962

                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1839694148  983 SSDSDSDSEDEAAKPAVKKPTPAAEAPASTPKASKKKAESSSDSSDSETEAKTTPAKPPVT 1043
Cdd:PHA03247  2963 WLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLALHEETDPPPVS 3023
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
604-796 2.47e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 55.27  E-value: 2.47e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  604 AKPATPAKAKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPaAAAESSSDSSSEDEEP 683
Cdd:PRK12323   372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALA-AARQASARGPGGAPAP 450

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  684 AKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPVAKPAAAA 763
Cdd:PRK12323   451 APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPA 530

                          170       180       190
                   ....*....|....*....|....*....|...
gi 1839694148  764 ESSSDSSSEDEEPAKAKPATPAKAKPATPVAKP 796
Cdd:PRK12323   531 TADPDDAFETLAPAPAAAPAPRAAAATEPVVAP 563
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 751-894 9.31e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 53.33  E-value: 9.31e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  751 KPATPVAKPaaaAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPA 830
Cdd:PRK07994   360 HPAAPLPEP---EVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGAT 436

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1839694148  831 TPAKAKPTTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKP---ATPAKAKPA 894
Cdd:PRK07994   437 KAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKepvATPKALKKA 503
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 621-759 1.58e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 52.56  E-value: 1.58e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  621 KPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPA 700
Cdd:PRK07994   360 HPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAK 439

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1839694148  701 KAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPAtPVAKP 759
Cdd:PRK07994   440 KSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKE-PVATP 497
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 601-716 2.31e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 52.02  E-value: 2.31e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  601 AKPAKPATPAKAKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSED 680
Cdd:PRK14951   373 AAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPP 452

                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 1839694148  681 EEPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPV 716
Cdd:PRK14951   453 AQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARL 488
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
612-880 3.56e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 51.39  E-value: 3.56e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  612 AKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAkPATPVAKPAAAAESSSDSSSEDEEPAKAKPATP 691
Cdd:PRK07003   364 GGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAA-LAPKAAAAAAATRAEAPPAAPAPPATADRGDDA 442

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  692 AKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSS 771
Cdd:PRK07003   443 ADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAP 522

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  772 EDEEPA--KAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPttpakaKPATPV 849
Cdd:PRK07003   523 AAAAPPapEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAP------RVAVQV 596

                          250       260       270
                   ....*....|....*....|....*....|.
gi 1839694148  850 AKPAAAAESSSDSSSEDEEPATPAKAKPATP 880
Cdd:PRK07003   597 PTPRARAATGDAPPNGAARAEQAAESRGAPP 627
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 687-848 3.71e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 51.40  E-value: 3.71e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  687 KPATPAkAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPvakpaaaaesS 766
Cdd:PRK07994   360 HPAAPL-PEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQ----------Q 428

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  767 SDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPTTPAKAKPA 846
Cdd:PRK07994   429 LQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEK 508


                   ..
gi 1839694148  847 TP 848
Cdd:PRK07994   509 TP 510
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
657-843 4.17e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 51.03  E-value: 4.17e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  657 AKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPA----KAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSE 732
Cdd:PRK12323   372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAaapaAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA 451

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  733 DEEPATPAKAKPATPAKAKP---ATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSE 809
Cdd:PRK12323   452 PAPAAAPAAAARPAAAGPRPvaaAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPAT 531

                          170       180       190
                   ....*....|....*....|....*....|....
gi 1839694148  810 DEEPATPAKAKPATPAKAKPATPAKAKPTTPAKA 843
Cdd:PRK12323   532 ADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRP 565
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 776-852 4.29e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 51.43  E-value: 4.29e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1839694148  776 PAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPTTPAKAKPATPVAKP 852
Cdd:PRK12270    43 APTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTP 119
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
652-900 4.79e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 51.00  E-value: 4.79e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  652 ATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAkpATPAKAKPSTPAKakPATPVAKPAAAAESSSDSSS 731
Cdd:PRK07003   367 APGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAA--LAPKAAAAAAATR--AEAPPAAPAPPATADRGDDA 442

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  732 EDEEPATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKakPATPVAKPAAAAESSSDSSSEDE 811
Cdd:PRK07003   443 ADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAA--APSAATPAAVPDARAPAAASRED 520

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  812 EPATPAKAKPAtpakAKPATPAKAKPTTPAKAKPAtpvAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPaka 891
Cdd:PRK07003   521 APAAAAPPAPE----ARPPTPAAAAPAARAGGAAA---ALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAP--- 590


                   ....*....
gi 1839694148  892 KPATPVAKP 900
Cdd:PRK07003   591 RVAVQVPTP 599
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 776-897 6.54e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 50.48  E-value: 6.54e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  776 PAKAKPATPAKAKPATPVAKPAAAAESSSDSSsedeepATPAKAKPATPAKAKPATPAKAKPTTPAKAKPATPVAKPAAA 855
Cdd:PRK14951   373 AAPAEKKTPARPEAAAPAAAPVAQAAAAPAPA------AAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVA 446

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 1839694148  856 AESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPATPV 897
Cdd:PRK14951   447 LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARL 488
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 813-900 9.42e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 50.27  E-value: 9.42e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  813 PATPAKAKPATPAKAKPATPAKAKPTTPAKAKPATPVAKPAAaaesssdsssedeePATPAKAKPATPAKAKPATPAKAK 892
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAA--------------PAAPPKPAAAAAAAAAPAAPPAAA 103


                   ....*...
gi 1839694148  893 PATPVAKP 900
Cdd:PRK12270   104 AAAAPAAA 111
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 813-900 1.28e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 49.89  E-value: 1.28e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  813 PATPAKAKPATPAKAKPATPAKAKPTTPAKAKPATPVAKPaaaaesssdsssedeepatPAKAKPATPAKAKPATPAKAK 892
Cdd:PRK12270    51 AAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAA-------------------AAAAAPAAPPAAAAAAAPAAA 111


                   ....*...
gi 1839694148  893 PATPVAKP 900
Cdd:PRK12270   112 AVEDEVTP 119
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 739-890 1.48e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 49.48  E-value: 1.48e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  739 PAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAK 818
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1839694148  819 AKPATPAKAKPATPAK---AKPTTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAK 890
Cdd:PRK07994   441 SEPAAASRARPVNSALerlASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAK 515
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
652-835 2.49e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 48.72  E-value: 2.49e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  652 ATPAKAKpATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSS 731
Cdd:PRK12323   372 AGPATAA-AAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAP 450

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  732 EDEEPATPAKAKPATPAKAKP-----------ATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKP---ATPVAKPA 797
Cdd:PRK12323   451 APAPAAAPAAAARPAAAGPRPvaaaaaaaparAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAgwvAESIPDPA 530

                          170       180       190
                   ....*....|....*....|....*....|....*...
gi 1839694148  798 AAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKA 835
Cdd:PRK12323   531 TADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRA 568
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 601-758 2.75e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 48.32  E-value: 2.75e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  601 AKPAKPATPAKAKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPvakpaaaaesSSDSSSED 680
Cdd:PRK07994   366 PEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQ----------QLQRAQGA 435

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  681 EEPAKAKPATPAKAKPATPAK---AKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPAtPAKAKPATPVA 757
Cdd:PRK07994   436 TKAKKSEPAAASRARPVNSALerlASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKA-LEHEKTPELAA 514


                   .
gi 1839694148  758 K 758
Cdd:PRK07994   515 K 515
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 602-719 3.76e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 48.17  E-value: 3.76e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  602 KPAKPAT-PAKAKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSED 680
Cdd:PRK14951   365 KPAAAAEaAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAA 444

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 1839694148  681 EEPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKP 719
Cdd:PRK14951   445 VALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAP 483
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 655-759 4.14e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 47.96  E-value: 4.14e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  655 AKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPvakpaaaaesssdsssede 734
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAA------------------- 94

                           90       100
                   ....*....|....*....|....*
gi 1839694148  735 EPATPAKAKPATPAKAKPATPVAKP 759
Cdd:PRK12270    95 APAAPPAAAAAAAPAAAAVEDEVTP 119
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 658-796 4.87e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 47.55  E-value: 4.87e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  658 KPATPVAKPAAAAESSSDSSSEdeePAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPA 737
Cdd:PRK07994   360 HPAAPLPEPEVPPQSAAPAASA---QATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGAT 436

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1839694148  738 TPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKA------KPATPAKAKPATPVAKP 796
Cdd:PRK07994   437 KAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAyrwkatNPVEVKKEPVATPKALK 501
PHA03247 PHA03247
large tegument protein UL36; Provisional
 688-1133 6.96e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.63  E-value: 6.96e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  688 PATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAK--AKPATPAKAKPATPVAKPAAAAES 765
Cdd:PHA03247  2553 PPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGdpRGPAPPSPLPPDTHAPDPPPPSPS 2632

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  766 SSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKakPATPAKAKPATPAKAKPTTPAKAKP 845
Cdd:PHA03247  2633 PAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRR--RAARPTVGSLTSLADPPPPPPTPEP 2710

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  846 ATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKakPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPAAK 925
Cdd:PHA03247  2711 APHALVSATPLPPGPAAARQASPALPAAPAPPAVPAG--PATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAV 2788

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  926 PATPASKPATPTAKAAAAESSSESSSEDEEPAKAKPA-ISAKAKPTTPAAKPAAAAESSSDSDSDSEDEAAKPAVKKPTP 1004
Cdd:PHA03247  2789 ASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAgPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPS 2868

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148 1005 AAEAPASTPKASKKKAESSSDSSDSETEAKTTPAKPPVTNGKAATPKAATPKAATPKTPA-KPAESSSSDSSSEEEEEAS 1083
Cdd:PHA03247  2869 RSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQpQPPPPPPPRPQPPLAPTTD 2948

                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|
gi 1839694148 1084 KSAVKPATPAATPKTTPAAKAKESSSSDSSSEEDAPRRAATAPTTPTTNG 1133
Cdd:PHA03247  2949 PAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTG 2998
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 784-900 7.02e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 47.02  E-value: 7.02e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  784 PAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPA-TPAKAKPATPAKAKPTTPAKAKPATPVAKPAAAAESSSDS 862
Cdd:PRK14951   366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAaAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAV 445

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1839694148  863 SSEDEEPATPAKAKPATPAKAKPATPAKAKPATPVAKP 900
Cdd:PRK14951   446 ALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAP 483
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 740-851 8.49e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 47.19  E-value: 8.49e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  740 AKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPaaaaesssdsssedeEPATPAKA 819
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAA---------------AAAAAPAA 98

                           90       100       110
                   ....*....|....*....|....*....|..
gi 1839694148  820 KPATPAKAKPATPAKAKPTTPAKAkPATPVAK 851
Cdd:PRK12270    99 PPAAAAAAAPAAAAVEDEVTPLRG-AAAAVAK 129
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 646-719 1.25e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 46.42  E-value: 1.25e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1839694148  646 PAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKP 719
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAA 111
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
736-900 1.71e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 46.02  E-value: 1.71e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  736 PATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPA--KAKPATPVAKPAAAAESSSDSSSEDEEP 813
Cdd:PRK12323   383 AQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEAlaAARQASARGPGGAPAPAPAPAAAPAAAA 462

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  814 ATPAKAKPATPAKAKPATPAKAKPTTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKP 893
Cdd:PRK12323   463 RPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLA 542


                   ....*..
gi 1839694148  894 ATPVAKP 900
Cdd:PRK12323   543 PAPAAAP 549
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 785-882 1.83e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 46.04  E-value: 1.83e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  785 AKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPTtpAKAKPATPVAKPAAAAESSSDSSS 864
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPA--AAAAAAAAPAAPPAAAAAAAPAAA 111

                           90
                   ....*....|....*...
gi 1839694148  865 EDEEPATPAKAKPATPAK 882
Cdd:PRK12270   112 AVEDEVTPLRGAAAAVAK 129
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 718-849 2.97e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 45.09  E-value: 2.97e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  718 KPAAAAesssdSSSEDEEPATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAkakPATPAKAKPATPVAKPA 797
Cdd:PRK14951   365 KPAAAA-----EAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPA---AAPPAPVAAPAAAAPAA 436

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1839694148  798 AAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPTTPAKAKPATPV 849
Cdd:PRK14951   437 APAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARL 488
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 683-779 3.54e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 44.88  E-value: 3.54e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  683 PAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSdsssedeePATPAKAKPATPAKAKPATPVAKPAAA 762
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAA--------PPKPAAAAAAAAAPAAPPAAAAAAAPA 109

                           90
                   ....*....|....*..
gi 1839694148  763 AESSSDSSSEDEEPAKA 779
Cdd:PRK12270   110 AAAVEDEVTPLRGAAAA 126
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 684-796 3.73e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 44.88  E-value: 3.73e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  684 AKAKPATPAKAKPATPAKAKPSTPAKAKPATPvakpaaaaesssdsssedeEPATPAKAKPATPAKAKPATPVAKPaaaa 763
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAK-------------------APAAPAPAPPAAAAPAAPPKPAAAA---- 90

                           90       100       110
                   ....*....|....*....|....*....|...
gi 1839694148  764 esssDSSSEDEEPAKAKPATPAKAKPATPVAKP 796
Cdd:PRK12270    91 ----AAAAAPAAPPAAAAAAAPAAAAVEDEVTP 119
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 610-718 5.79e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 44.50  E-value: 5.79e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  610 AKAKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPaaaaesssdsssedeePAKAKPA 689
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAA----------------AAAAAPA 97

                           90       100       110
                   ....*....|....*....|....*....|..
gi 1839694148  690 TPAKAKPATPAKAKPSTPAKAK---PATPVAK 718
Cdd:PRK12270    98 APPAAAAAAAPAAAAVEDEVTPlrgAAAAVAK 129
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 683-796 6.18e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.93  E-value: 6.18e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  683 PAKAKPATPAKAKPATPAKAKPSTPAkakPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPVAKPAAA 762
Cdd:PRK14951   373 AAPAEKKTPARPEAAAPAAAPVAQAA---AAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAP 449

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1839694148  763 AESSSDSSSEDEEPAKAKPATPAKAKPATPVAKP 796
Cdd:PRK14951   450 APPAQAAPETVAIPVRVAPEPAVASAAPAPAAAP 483
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
601-840 1.20e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 43.30  E-value: 1.20e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  601 AKPAKPATPAKAKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPAtPVAKPAAAAESSSDSSSED 680
Cdd:PRK07003   382 APGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDD-AADGDAPVPAKANARASAD 460

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  681 EEPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKakPATPAKAKPATPVAKPA 760
Cdd:PRK07003   461 SRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDA--PAAAAPPAPEARPPTPA 538

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  761 AAAESSSDSSSEDE----------EPAKAKPATPAKAKPATpvAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPA 830
Cdd:PRK07003   539 AAAPAARAGGAAAAldvlrnagmrVSSDRGARAAAAAKPAA--APAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARA 616

                          250
                   ....*....|
gi 1839694148  831 TPAKAKPTTP 840
Cdd:PRK07003   617 EQAAESRGAP 626
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 646-759 1.25e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.16  E-value: 1.25e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  646 PAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPAtPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAES 725
Cdd:PRK14951   381 PARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPA-PVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPET 459

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1839694148  726 SSDSSSEDEEPATPAKAKPATPAKAKPATPVAKP 759
Cdd:PRK14951   460 VAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 646-719 1.45e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 42.96  E-value: 1.45e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1839694148  646 PAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAkakPATPAKAKPSTPAKAKPATPVAKP 719
Cdd:PRK12270    49 AAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAA---PAAPPAAAAAAAPAAAAVEDEVTP 119
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
699-889 2.26e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 42.14  E-value: 2.26e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  699 PAKAKPSTPAKAKPATPvakPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAK 778
Cdd:PRK07003   360 PAVTGGGAPGGGVPARV---AGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATA 436

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  779 AKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAkpATPAKAKPATPAKAKPTTPAKAKPATPVAKPAAAAES 858
Cdd:PRK07003   437 DRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSA--SAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPA 514

                          170       180       190
                   ....*....|....*....|....*....|..
gi 1839694148  859 SSDSSSEDEEPATPA-KAKPATPAKAKPATPA 889
Cdd:PRK07003   515 AASREDAPAAAAPPApEARPPTPAAAAPAARA 546
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 646-776 2.48e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.01  E-value: 2.48e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  646 PAKAKPATPAKAKpaTPVAKPAAAAESSSDSSSEDEEPAKAkpATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAES 725
Cdd:PRK14951   366 PAAAAEAAAPAEK--KTPARPEAAAPAAAPVAQAAAAPAPA--AAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAA 441

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1839694148  726 SSDSSSEDEEPATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEP 776
Cdd:PRK14951   442 PAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 695-824 2.99e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 41.62  E-value: 2.99e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  695 KPATPAKAKPSTPAKAkPATPVAKPAAAAESSSDSSSEDEEPAtPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDE 774
Cdd:PRK14951   365 KPAAAAEAAAPAEKKT-PARPEAAAPAAAPVAQAAAAPAPAAA-PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAP 442

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 1839694148  775 EPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATP 824
Cdd:PRK14951   443 AAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 646-848 9.80e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.35  E-value: 9.80e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  646 PAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPakakpatPAKAKPSTPAKAKPATPVAKPAAAAES 725
Cdd:PRK07764   599 GPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPA-------PGVAAPEHHPKHVAVPDASDGGDGWPA 671

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694148  726 SSDSSSEDEEPATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSD 805
Cdd:PRK07764   672 KAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDP 751

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|...
gi 1839694148  806 SSSEDEEPATPAKAKPATPAKAKPATPAKAKPTTPAKAKPATP 848
Cdd:PRK07764   752 AGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMD 794
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 816-893 9.90e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 40.31  E-value: 9.90e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1839694148  816 PAKAKPATPAKAKPATPAKAKPTTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKP 893
Cdd:PRK14954   382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAPLPPSPQASAPRNVASGKP 459
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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