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Conserved domains on  [gi|1839694146|ref|XP_034065615|]
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nucleolar and coiled-body phosphoprotein 1 isoform X5 [Gymnodraco acuticeps]

Protein Classification

nucleolar and coiled-body phosphoprotein 1 family protein( domain architecture ID 10523427)

nucleolar and coiled-body phosphoprotein 1 (NOLC1) family protein; similar to mammalian NOLC1 (also known as Nopp140) which may participate in the regulation of rRNA transcription by interacting with the largest subunit of RNA polymerase I, and to Saccharomyces cerevisiae suppressor protein Srp40 which is a weak suppressor of a mutant of the subunit AC40 of DNA dependent RNA polymerase I and III; may be a chaperone involved in nucleocytoplasmic transport

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SRP40_C pfam05022
SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae ...
 1185-1258 1.81e-32

SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae SRP40 protein and its homologs. SRP40/nopp40 is a chaperone involved in nucleocytoplasmic transport. SRP40 is also a suppressor of mutant AC40 subunit of RNA polymerase I and III.


:

Pssm-ID: 461525  Cd Length: 75  Bit Score: 120.72  E-value: 1.81e-32
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1839694146 1185 PFRRIREEEVAV--DPRLQDNSFDAKfGSNGDWGQKANDTLRFTKGKSFRHEKTKKKRGSYRGGAINSTSVNSIKF 1258
Cdd:pfam05022    1 PFQRVDPEDVVVfaDPRLADNSYEAK-GAEDDYGEKANEDLIVTRGKGFRKEKNKKKRGSYRGGAIDTNSVNSIKF 75
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 602-908 9.60e-10

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 63.42  E-value: 9.60e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  602 KPAKPATPAKAKSATpAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKakPATPVAKPAAAAESSSDSSSede 681
Cdd:PHA03247  2682 RPRRRAARPTVGSLT-SLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPAL--PAAPAPPAVPAGPATPGGPA--- 2755

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  682 epAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPVAKPAA 761
Cdd:PHA03247  2756 --RPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTS 2833

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  762 AAESSSDSSSEDEEP--------------AKAKPATPAKAKPATPAKAK----PATPVAKPAAAAESSSDSSSEDEEPAT 823
Cdd:PHA03247  2834 AQPTAPPPPPGPPPPslplggsvapggdvRRRPPSRSPAAKPAAPARPPvrrlARPAVSRSTESFALPPDQPERPPQPQA 2913

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  824 PAKAKPATPAKAkPATPAKAKPTTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAkPATPAKAKPATPAKAKPAT 903
Cdd:PHA03247  2914 PPPPQPQPQPPP-PPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRV-AVPRFRVPQPAPSREAPAS 2991


                   ....*
gi 1839694146  904 PVAKP 908
Cdd:PHA03247  2992 STPPL 2996
 
Name Accession Description Interval E-value
SRP40_C pfam05022
SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae ...
 1185-1258 1.81e-32

SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae SRP40 protein and its homologs. SRP40/nopp40 is a chaperone involved in nucleocytoplasmic transport. SRP40 is also a suppressor of mutant AC40 subunit of RNA polymerase I and III.


Pssm-ID: 461525  Cd Length: 75  Bit Score: 120.72  E-value: 1.81e-32
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1839694146 1185 PFRRIREEEVAV--DPRLQDNSFDAKfGSNGDWGQKANDTLRFTKGKSFRHEKTKKKRGSYRGGAINSTSVNSIKF 1258
Cdd:pfam05022    1 PFQRVDPEDVVVfaDPRLADNSYEAK-GAEDDYGEKANEDLIVTRGKGFRKEKNKKKRGSYRGGAIDTNSVNSIKF 75
PHA03247 PHA03247
large tegument protein UL36; Provisional
 602-908 9.60e-10

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 63.42  E-value: 9.60e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  602 KPAKPATPAKAKSATpAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKakPATPVAKPAAAAESSSDSSSede 681
Cdd:PHA03247  2682 RPRRRAARPTVGSLT-SLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPAL--PAAPAPPAVPAGPATPGGPA--- 2755

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  682 epAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPVAKPAA 761
Cdd:PHA03247  2756 --RPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTS 2833

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  762 AAESSSDSSSEDEEP--------------AKAKPATPAKAKPATPAKAK----PATPVAKPAAAAESSSDSSSEDEEPAT 823
Cdd:PHA03247  2834 AQPTAPPPPPGPPPPslplggsvapggdvRRRPPSRSPAAKPAAPARPPvrrlARPAVSRSTESFALPPDQPERPPQPQA 2913

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  824 PAKAKPATPAKAkPATPAKAKPTTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAkPATPAKAKPATPAKAKPAT 903
Cdd:PHA03247  2914 PPPPQPQPQPPP-PPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRV-AVPRFRVPQPAPSREAPAS 2991


                   ....*
gi 1839694146  904 PVAKP 908
Cdd:PHA03247  2992 STPPL 2996
 
Name Accession Description Interval E-value
SRP40_C pfam05022
SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae ...
 1185-1258 1.81e-32

SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae SRP40 protein and its homologs. SRP40/nopp40 is a chaperone involved in nucleocytoplasmic transport. SRP40 is also a suppressor of mutant AC40 subunit of RNA polymerase I and III.


Pssm-ID: 461525  Cd Length: 75  Bit Score: 120.72  E-value: 1.81e-32
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1839694146 1185 PFRRIREEEVAV--DPRLQDNSFDAKfGSNGDWGQKANDTLRFTKGKSFRHEKTKKKRGSYRGGAINSTSVNSIKF 1258
Cdd:pfam05022    1 PFQRVDPEDVVVfaDPRLADNSYEAK-GAEDDYGEKANEDLIVTRGKGFRKEKNKKKRGSYRGGAIDTNSVNSIKF 75
PHA03247 PHA03247
large tegument protein UL36; Provisional
 602-908 9.60e-10

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 63.42  E-value: 9.60e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  602 KPAKPATPAKAKSATpAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKakPATPVAKPAAAAESSSDSSSede 681
Cdd:PHA03247  2682 RPRRRAARPTVGSLT-SLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPAL--PAAPAPPAVPAGPATPGGPA--- 2755

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  682 epAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPVAKPAA 761
Cdd:PHA03247  2756 --RPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTS 2833

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  762 AAESSSDSSSEDEEP--------------AKAKPATPAKAKPATPAKAK----PATPVAKPAAAAESSSDSSSEDEEPAT 823
Cdd:PHA03247  2834 AQPTAPPPPPGPPPPslplggsvapggdvRRRPPSRSPAAKPAAPARPPvrrlARPAVSRSTESFALPPDQPERPPQPQA 2913

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  824 PAKAKPATPAKAkPATPAKAKPTTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAkPATPAKAKPATPAKAKPAT 903
Cdd:PHA03247  2914 PPPPQPQPQPPP-PPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRV-AVPRFRVPQPAPSREAPAS 2991


                   ....*
gi 1839694146  904 PVAKP 908
Cdd:PHA03247  2992 STPPL 2996
PHA03247 PHA03247
large tegument protein UL36; Provisional
 602-1051 9.86e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 56.87  E-value: 9.86e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  602 KPAKPATPAKAK--SATPAKAKPATPVAKPAAAaesssdsssedeepakAKPATPAKAKPATPVAKPAAAAESSSDSSSE 679
Cdd:PHA03247  2576 RPSEPAVTSRARrpDAPPQSARPRAPVDDRGDP----------------RGPAPPSPLPPDTHAPDPPPPSPSPAANEPD 2639

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  680 DEEPAKAKPATPAKAKPATPAKAKPS-TPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPVAK 758
Cdd:PHA03247  2640 PHPPPTVPPPERPRDDPAPGRVSRPRrARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSAT 2719

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  759 PAAAAESSSDSSSEDEEPAKAKPATPAKakPATPAKakPATPVAKPAAAAESSSDSSSEDEEPATPAKAKP--ATPAKAK 836
Cdd:PHA03247  2720 PLPPGPAAARQASPALPAAPAPPAVPAG--PATPGG--PARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPavASLSESR 2795

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  837 PATPAKAKPTTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATP---------------AKAKPATPAKAKP 901
Cdd:PHA03247  2796 ESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPpslplggsvapggdvRRRPPSRSPAAKP 2875

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  902 ATPVAKPAAAAESSSDSSSEDEEPAKAKPAAKPATPASKPATPTAKAAAAESSSESSSEDEEPAKAKPAisAKAKPTTPA 981
Cdd:PHA03247  2876 AAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLA--PTTDPAGAG 2953

                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  982 AKPAAAAESSSDSDSDSEDEAAKPAVKKPTPAAEAPASTPKASKKKAESSSDSSDSETEAKTTPAKPPVT 1051
Cdd:PHA03247  2954 EPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLALHEETDPPPVS 3023
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
652-856 1.00e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 53.34  E-value: 1.00e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  652 ATPAKAKpATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSS 731
Cdd:PRK12323   372 AGPATAA-AAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAP 450

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  732 EDEEPATPAKAKPATPAKAKPATPVAKPAAAAESssdsssedeePAKAKPATPAKAKPATPAKAKPATPVAKPAAAAESS 811
Cdd:PRK12323   451 APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAA----------PAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAG 520

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*
gi 1839694146  812 SDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPTTPAKAKPATP 856
Cdd:PRK12323   521 WVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRP 565
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 751-902 1.06e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 52.95  E-value: 1.06e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  751 KPATPVAKPAAAAEsssdsssedeePAKAKPATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPA 830
Cdd:PRK07994   360 HPAAPLPEPEVPPQ-----------SAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQ 428

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1839694146  831 TPAKAKPATPAKAKPTTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKP---ATPAKAKPA 902
Cdd:PRK07994   429 LQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKepvATPKALKKA 503
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 621-759 1.68e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 52.56  E-value: 1.68e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  621 KPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPA 700
Cdd:PRK07994   360 HPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAK 439

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1839694146  701 KAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPAtPVAKP 759
Cdd:PRK07994   440 KSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKE-PVATP 497
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
694-904 1.79e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 52.19  E-value: 1.79e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  694 AKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAkpATPAKAKPAtpVAKPAAAAESSSDSSSED 773
Cdd:PRK12323   372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVA--AAPARRSPA--PEALAAARQASARGPGGA 447

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  774 EEPAKAKPATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPTTPAKAKP 853
Cdd:PRK12323   448 PAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIP 527

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1839694146  854 ATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPATP 904
Cdd:PRK12323   528 DPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFD 578
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 776-905 1.91e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 52.02  E-value: 1.91e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  776 PAKAKPATPAKAKpATPAKAKPATPVAKPAAAAESSSDSSsedeepATPAKAKPATPAKAKPATPAKAKPTTPAKAKPAT 855
Cdd:PRK14951   366 PAAAAEAAAPAEK-KTPARPEAAAPAAAPVAQAAAAPAPA------AAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAP 438

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 1839694146  856 PVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPATPV 905
Cdd:PRK14951   439 AAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARL 488
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 658-798 2.18e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 52.18  E-value: 2.18e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  658 KPATPVAKPaaaAESSSDSSSEDEEPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPA 737
Cdd:PRK07994   360 HPAAPLPEP---EVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGAT 436

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1839694146  738 TPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKA------KPATPAKAKPATPAKAKPA 798
Cdd:PRK07994   437 KAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAyrwkatNPVEVKKEPVATPKALKKA 503
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 711-856 2.36e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 51.79  E-value: 2.36e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  711 KPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKP---ATPVAKPAAAAESSSDSSSEDEEPAKAKPAT--PA 785
Cdd:PRK07994   360 HPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPppaSAPQQAPAVPLPETTSQLLAARQQLQRAQGAtkAK 439

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1839694146  786 KAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPTTPAKAKPATP 856
Cdd:PRK07994   440 KSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTP 510
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 601-716 2.53e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 51.64  E-value: 2.53e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  601 AKPAKPATPAKAKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSED 680
Cdd:PRK14951   373 AAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPP 452

                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 1839694146  681 EEPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPV 716
Cdd:PRK14951   453 AQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARL 488
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 747-898 5.44e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 50.63  E-value: 5.44e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  747 PAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAK 826
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1839694146  827 AKPATPAKAKPATPAK---AKPTTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAK 898
Cdd:PRK07994   441 SEPAAASRARPVNSALerlASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAK 515
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 776-860 5.91e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 51.04  E-value: 5.91e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  776 PAKAKPATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAkakPATPAKAKPTTPAKAKPAT 855
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAA---PAAPPAAAAAAAPAAAAVE 114


                   ....*
gi 1839694146  856 PVAKP 860
Cdd:PRK12270   115 DEVTP 119
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 821-908 9.82e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 50.27  E-value: 9.82e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  821 PATPAKAKPATPAKAKPATPAKAKPTTPAKAKPATPVAKPAAaaesssdsssedeePATPAKAKPATPAKAKPATPAKAK 900
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAA--------------PAAPPKPAAAAAAAAAPAAPPAAA 103


                   ....*...
gi 1839694146  901 PATPVAKP 908
Cdd:PRK12270   104 AAAAPAAA 111
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 736-857 1.13e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 49.71  E-value: 1.13e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  736 PATPAKAKPATPAKAKPATPVAKPaaaaesssdssSEDEEPAKAKPATPAKAKPATPAKAKPATPVAKPAAAAESSSDSS 815
Cdd:PRK14951   378 KKTPARPEAAAPAAAPVAQAAAAP-----------APAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVA 446

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 1839694146  816 SEDEEPATPAKAKPATPAKAKPATPAKAKPTTPAKAKPATPV 857
Cdd:PRK14951   447 LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARL 488
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
683-908 1.26e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 49.85  E-value: 1.26e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  683 PAKAKPATPAKAKPATPAKAKPSTPAKAKPATPV-AKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPVAKPAA 761
Cdd:PRK07003   360 PAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGAsAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRG 439

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  762 AAESSSDSSSEDEEPAKAKPATPAKAKPATPAkAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPA 841
Cdd:PRK07003   440 DDAADGDAPVPAKANARASADSRCDERDAQPP-ADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASR 518

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  842 KAKPTTPAKAKPATPVAKPAAAAESSSDSSSEDE-----------------EPATPAKAKPATPAKAKPATPakaKPATP 904
Cdd:PRK07003   519 EDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAAldvlrnagmrvssdrgaRAAAAAKPAAAPAAAPKPAAP---RVAVQ 595


                   ....
gi 1839694146  905 VAKP 908
Cdd:PRK07003   596 VPTP 599
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 821-908 1.39e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 49.50  E-value: 1.39e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  821 PATPAKAKPATPAKAKPATPAKAKPTTPAKAKPATPVAKPaaaaesssdsssedeepatPAKAKPATPAKAKPATPAKAK 900
Cdd:PRK12270    51 AAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAA-------------------AAAAAPAAPPAAAAAAAPAAA 111


                   ....*...
gi 1839694146  901 PATPVAKP 908
Cdd:PRK12270   112 AVEDEVTP 119
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
745-908 1.82e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 49.10  E-value: 1.82e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  745 ATPAKAKpATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATP 824
Cdd:PRK12323   372 AGPATAA-AAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAP 450

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  825 AKAKPATPAKAKPATPAKAKPTTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPATP 904
Cdd:PRK12323   451 APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPA 530


                   ....
gi 1839694146  905 VAKP 908
Cdd:PRK12323   531 TADP 534
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
590-795 1.83e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 49.10  E-value: 1.83e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  590 SSDSSSEDEEPAKPAKPATPAKAKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAA 669
Cdd:PRK12323   380 APVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPA 459

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  670 AESSSDSSSEDEEPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAK 749
Cdd:PRK12323   460 AAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFE 539

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*.
gi 1839694146  750 AKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPAKA 795
Cdd:PRK12323   540 TLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWPALA 585
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 748-859 2.03e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 49.12  E-value: 2.03e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  748 AKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPAKAKPATPVAKPaaaaesssdsssedeEPATPAKA 827
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAA---------------AAAAAPAA 98

                           90       100       110
                   ....*....|....*....|....*....|..
gi 1839694146  828 KPATPAKAKPATPAKAKPTTPAKAkPATPVAK 859
Cdd:PRK12270    99 PPAAAAAAAPAAAAVEDEVTPLRG-AAAAVAK 129
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 684-804 2.45e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 48.73  E-value: 2.45e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  684 AKAKPATPAKAKPATPAKAKPSTPAKAKPATPvakpaaaaesssdsssedeEPATPAKAKPATPAKAKPATPVAKPaaaa 763
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAK-------------------APAAPAPAPPAAAAPAAPPKPAAAA---- 90

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 1839694146  764 esssdsssedeePAKAKPATPAKAKPATPAKAKPATPVAKP 804
Cdd:PRK12270    91 ------------AAAAAPAAPPAAAAAAAPAAAAVEDEVTP 119
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 601-758 3.02e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 48.32  E-value: 3.02e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  601 AKPAKPATPAKAKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPvakpaaaaesSSDSSSED 680
Cdd:PRK07994   366 PEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQ----------QLQRAQGA 435

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  681 EEPAKAKPATPAKAKPATPAK---AKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPAtPAKAKPATPVA 757
Cdd:PRK07994   436 TKAKKSEPAAASRARPVNSALerlASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKA-LEHEKTPELAA 514


                   .
gi 1839694146  758 K 758
Cdd:PRK07994   515 K 515
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 602-719 4.13e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 47.79  E-value: 4.13e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  602 KPAKPAT-PAKAKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSED 680
Cdd:PRK14951   365 KPAAAAEaAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAA 444

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 1839694146  681 EEPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKP 719
Cdd:PRK14951   445 VALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAP 483
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 655-759 4.39e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 47.96  E-value: 4.39e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  655 AKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPvakpaaaaesssdsssede 734
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAA------------------- 94

                           90       100
                   ....*....|....*....|....*
gi 1839694146  735 EPATPAKAKPATPAKAKPATPVAKP 759
Cdd:PRK12270    95 APAAPPAAAAAAAPAAAAVEDEVTP 119
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 683-801 4.53e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 47.79  E-value: 4.53e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  683 PAKAKPATPAKAKPATPAKAKPSTPAkakPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPVAKPAAA 762
Cdd:PRK14951   373 AAPAEKKTPARPEAAAPAAAPVAQAA---AAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAP 449

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 1839694146  763 AESSSDSSSEDEEPAKAKPATPAKAKPATPAKAKPATPV 801
Cdd:PRK14951   450 APPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARL 488
PHA03247 PHA03247
large tegument protein UL36; Provisional
 683-1141 7.38e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.63  E-value: 7.38e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  683 PAKAKPATPAKAKPATPAKAKPSTPA-KAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPVAKPAA 761
Cdd:PHA03247  2556 PPAAPPAAPDRSVPPPRPAPRPSEPAvTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAA 2635

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  762 AAESSSDSSSEDEEPAKAKPATPAKAKP---------ATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATP 832
Cdd:PHA03247  2636 NEPDPHPPPTVPPPERPRDDPAPGRVSRprrarrlgrAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHAL 2715

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  833 AKAKPATPAKAKPTTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPATPVAKPAAAA 912
Cdd:PHA03247  2716 VSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESR 2795

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  913 ESSSDSSSEDEEPAKAKPAAKPATPASKPATPTAKAAAAESSSESSSEDEEPAKAKPAISAKAKPTTPAAKPAaaaesss 992
Cdd:PHA03247  2796 ESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPS------- 2868

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  993 dsdsdsedeaaKPAVKKPTPAAEAPASTPKASKKKAESSSDSSDSETEAKTTPAKPPVTNGKAATPKAATPKAATPKTPA 1072
Cdd:PHA03247  2869 -----------RSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPP 2937

                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1839694146 1073 KPAESSSSDSSSEEEEEASKSAVKPATPAATPKTTPAAKAKESSSSDSSSEEdaprraatAPTTPTTNG 1141
Cdd:PHA03247  2938 RPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAP--------ASSTPPLTG 2998
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
582-832 8.96e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 46.77  E-value: 8.96e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  582 PAAAAAESSSDSSSEDEEPAKPAKPATPAKAKSATPAKAK-PATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPA 660
Cdd:PRK07003   385 ARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEaPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCD 464

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  661 TPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPAkakpstPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPA 740
Cdd:PRK07003   465 ERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATP------AAVPDARAPAAASREDAPAAAAPPAPEARPPTPA 538

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  741 KAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPakaKPATPVAKPAAAAESSSDSSSEDEE 820
Cdd:PRK07003   539 AAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAP---RVAVQVPTPRARAATGDAPPNGAAR 615

                          250
                   ....*....|..
gi 1839694146  821 PATPAKAKPATP 832
Cdd:PRK07003   616 AEQAAESRGAPP 627
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 646-719 1.31e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 46.42  E-value: 1.31e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1839694146  646 PAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKP 719
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAA 111
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 793-890 1.88e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 46.04  E-value: 1.88e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  793 AKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPTtpAKAKPATPVAKPAAAAESSSDSSS 872
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPA--AAAAAAAAPAAPPAAAAAAAPAAA 111

                           90
                   ....*....|....*...
gi 1839694146  873 EDEEPATPAKAKPATPAK 890
Cdd:PRK12270   112 AVEDEVTPLRGAAAAVAK 129
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 740-851 1.88e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 46.04  E-value: 1.88e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  740 AKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPAKAKPATPvakpaaaaesssdsssede 819
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAA------------------- 94

                           90       100       110
                   ....*....|....*....|....*....|..
gi 1839694146  820 EPATPAKAKPATPAKAKPATPAKAKPTTPAKA 851
Cdd:PRK12270    95 APAAPPAAAAAAAPAAAAVEDEVTPLRGAAAA 126
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 683-779 3.72e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 44.88  E-value: 3.72e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  683 PAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSdsssedeePATPAKAKPATPAKAKPATPVAKPAAA 762
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAA--------PPKPAAAAAAAAAPAAPPAAAAAAAPA 109

                           90
                   ....*....|....*..
gi 1839694146  763 AESSSDSSSEDEEPAKA 779
Cdd:PRK12270   110 AAAVEDEVTPLRGAAAA 126
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 610-718 6.18e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 44.11  E-value: 6.18e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  610 AKAKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPaaaaesssdsssedeePAKAKPA 689
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAA----------------AAAAAPA 97

                           90       100       110
                   ....*....|....*....|....*....|..
gi 1839694146  690 TPAKAKPATPAKAKPSTPAKAK---PATPVAK 718
Cdd:PRK12270    98 APPAAAAAAAPAAAAVEDEVTPlrgAAAAVAK 129
PRK05035 PRK05035
electron transport complex protein RnfC; Provisional
 684-894 7.38e-04

electron transport complex protein RnfC; Provisional


Pssm-ID: 235334 [Multi-domain]  Cd Length: 695  Bit Score: 43.78  E-value: 7.38e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  684 AKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPVAKPAAAA 763
Cdd:PRK05035   482 AKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAADPKKAAVAAAIARAKAKK 561

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  764 ESSSDSSSEDEEPAKAKPATPAKAKP-ATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPAtpakAKPATPAK 842
Cdd:PRK05035   562 AAQQAANAEAEEEVDPKKAAVAAAIArAKAKKAAQQAASAEPEEQVAEVDPKKAAVAAAIARAKAKKA----EQQANAEP 637

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1839694146  843 AKPTTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPAT---PAKAKPA 894
Cdd:PRK05035   638 EEPVDPRKAAVAAAIARAKARKAAQQQANAEPEEAEDPKKAAVAAaiaRAKAKKA 692
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 646-759 1.37e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.78  E-value: 1.37e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  646 PAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPAtPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAES 725
Cdd:PRK14951   381 PARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPA-PVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPET 459

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1839694146  726 SSDSSSEDEEPATPAKAKPATPAKAKPATPVAKP 759
Cdd:PRK14951   460 VAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 646-719 1.50e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 42.96  E-value: 1.50e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1839694146  646 PAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAkakPATPAKAKPSTPAKAKPATPVAKP 719
Cdd:PRK12270    49 AAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAA---PAAPPAAAAAAAPAAAAVEDEVTP 119
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 691-824 1.56e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.78  E-value: 1.56e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  691 PAKAKPATPAKAKpSTPAKAKPATPVAKPAAAAESSSDSSsedeepATPAKAKPATPAKAKPATPVAKPAAAAESSSDSS 770
Cdd:PRK14951   366 PAAAAEAAAPAEK-KTPARPEAAAPAAAPVAQAAAAPAPA------AAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAP 438

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1839694146  771 SEDEEPAKAKPATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATP 824
Cdd:PRK14951   439 AAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 686-906 1.94e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.67  E-value: 1.94e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  686 AKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAK-PATPAKAKPATPVAKPAAAAE 764
Cdd:PRK07764   586 AVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPaPGVAAPEHHPKHVAVPDASDG 665

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  765 SSSDSSSEDEEPAKAKPATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAK 844
Cdd:PRK07764   666 GDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEP 745

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1839694146  845 PTTPAKAKPatPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPATPVA 906
Cdd:PRK07764   746 DDPPDPAGA--PAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAEEVA 805
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 646-776 2.58e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.01  E-value: 2.58e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  646 PAKAKPATPAKAKpaTPVAKPAAAAESSSDSSSEDEEPAKAkpATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAES 725
Cdd:PRK14951   366 PAAAAEAAAPAEK--KTPARPEAAAPAAAPVAQAAAAPAPA--AAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAA 441

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1839694146  726 SSDSSSEDEEPATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEP 776
Cdd:PRK14951   442 PAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 664-858 9.23e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.35  E-value: 9.23e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  664 AKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAK 743
Cdd:PRK07764   591 APGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWP 670

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694146  744 PATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAT 823
Cdd:PRK07764   671 AKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPD 750

                          170       180       190
                   ....*....|....*....|....*....|....*
gi 1839694146  824 PAKAKPATPAKAKPATPAKAKPTTPAKAKPATPVA 858
Cdd:PRK07764   751 PAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEM 785
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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