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Conserved domains on  [gi|1839694142|ref|XP_034065613|]
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nucleolar and coiled-body phosphoprotein 1 isoform X3 [Gymnodraco acuticeps]

Protein Classification

nucleolar and coiled-body phosphoprotein 1 family protein( domain architecture ID 10523427)

nucleolar and coiled-body phosphoprotein 1 (NOLC1) family protein; similar to mammalian NOLC1 (also known as Nopp140) which may participate in the regulation of rRNA transcription by interacting with the largest subunit of RNA polymerase I, and to Saccharomyces cerevisiae suppressor protein Srp40 which is a weak suppressor of a mutant of the subunit AC40 of DNA dependent RNA polymerase I and III; may be a chaperone involved in nucleocytoplasmic transport

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SRP40_C pfam05022
SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae ...
 1185-1258 1.81e-32

SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae SRP40 protein and its homologs. SRP40/nopp40 is a chaperone involved in nucleocytoplasmic transport. SRP40 is also a suppressor of mutant AC40 subunit of RNA polymerase I and III.


:

Pssm-ID: 461525  Cd Length: 75  Bit Score: 120.72  E-value: 1.81e-32
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1839694142 1185 PFRRIREEEVAV--DPRLQDNSFDAKfGSNGDWGQKANDTLRFTKGKSFRHEKTKKKRGSYRGGAINSTSVNSIKF 1258
Cdd:pfam05022    1 PFQRVDPEDVVVfaDPRLADNSYEAK-GAEDDYGEKANEDLIVTRGKGFRKEKNKKKRGSYRGGAIDTNSVNSIKF 75
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 576-908 1.25e-07

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 56.49  E-value: 1.25e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  576 ATPAAKPAAAAAESSSDSSSEDEEPAKPAKPATPAKAKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPA 655
Cdd:PHA03247  2578 SEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPA 2657

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  656 KAKPATPAKAKPATPAKAKPSTPAKAKPatPVAKPaaaaesssdssseDEEPATPAKAKPATPAKAKPATPVAKPAAAAE 735
Cdd:PHA03247  2658 PGRVSRPRRARRLGRAAQASSPPQRPRR--RAARP-------------TVGSLTSLADPPPPPPTPEPAPHALVSATPLP 2722

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  736 SSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSS 815
Cdd:PHA03247  2723 PGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPW 2802

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  816 SEDEEPATPAKAKPATPAKAKPATPAkAKPTTPAKAKPATPVAKPAAAAESSSDSSS----EDEEPATPAKAKPATPAK- 890
Cdd:PHA03247  2803 DPADPPAAVLAPAAALPPAASPAGPL-PPPTSAQPTAPPPPPGPPPPSLPLGGSVAPggdvRRRPPSRSPAAKPAAPARp 2881

                          330       340
                   ....*....|....*....|
gi 1839694142  891 --AKPATPAKAKPATPVAKP 908
Cdd:PHA03247  2882 pvRRLARPAVSRSTESFALP 2901
 
Name Accession Description Interval E-value
SRP40_C pfam05022
SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae ...
 1185-1258 1.81e-32

SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae SRP40 protein and its homologs. SRP40/nopp40 is a chaperone involved in nucleocytoplasmic transport. SRP40 is also a suppressor of mutant AC40 subunit of RNA polymerase I and III.


Pssm-ID: 461525  Cd Length: 75  Bit Score: 120.72  E-value: 1.81e-32
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1839694142 1185 PFRRIREEEVAV--DPRLQDNSFDAKfGSNGDWGQKANDTLRFTKGKSFRHEKTKKKRGSYRGGAINSTSVNSIKF 1258
Cdd:pfam05022    1 PFQRVDPEDVVVfaDPRLADNSYEAK-GAEDDYGEKANEDLIVTRGKGFRKEKNKKKRGSYRGGAIDTNSVNSIKF 75
PHA03247 PHA03247
large tegument protein UL36; Provisional
 576-908 1.25e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 56.49  E-value: 1.25e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  576 ATPAAKPAAAAAESSSDSSSEDEEPAKPAKPATPAKAKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPA 655
Cdd:PHA03247  2578 SEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPA 2657

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  656 KAKPATPAKAKPATPAKAKPSTPAKAKPatPVAKPaaaaesssdssseDEEPATPAKAKPATPAKAKPATPVAKPAAAAE 735
Cdd:PHA03247  2658 PGRVSRPRRARRLGRAAQASSPPQRPRR--RAARP-------------TVGSLTSLADPPPPPPTPEPAPHALVSATPLP 2722

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  736 SSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSS 815
Cdd:PHA03247  2723 PGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPW 2802

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  816 SEDEEPATPAKAKPATPAKAKPATPAkAKPTTPAKAKPATPVAKPAAAAESSSDSSS----EDEEPATPAKAKPATPAK- 890
Cdd:PHA03247  2803 DPADPPAAVLAPAAALPPAASPAGPL-PPPTSAQPTAPPPPPGPPPPSLPLGGSVAPggdvRRRPPSRSPAAKPAAPARp 2881

                          330       340
                   ....*....|....*....|
gi 1839694142  891 --AKPATPAKAKPATPVAKP 908
Cdd:PHA03247  2882 pvRRLARPAVSRSTESFALP 2901
 
Name Accession Description Interval E-value
SRP40_C pfam05022
SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae ...
 1185-1258 1.81e-32

SRP40, C-terminal domain; This presumed domain is found at the C-terminus of the S. cerevisiae SRP40 protein and its homologs. SRP40/nopp40 is a chaperone involved in nucleocytoplasmic transport. SRP40 is also a suppressor of mutant AC40 subunit of RNA polymerase I and III.


Pssm-ID: 461525  Cd Length: 75  Bit Score: 120.72  E-value: 1.81e-32
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1839694142 1185 PFRRIREEEVAV--DPRLQDNSFDAKfGSNGDWGQKANDTLRFTKGKSFRHEKTKKKRGSYRGGAINSTSVNSIKF 1258
Cdd:pfam05022    1 PFQRVDPEDVVVfaDPRLADNSYEAK-GAEDDYGEKANEDLIVTRGKGFRKEKNKKKRGSYRGGAIDTNSVNSIKF 75
PHA03247 PHA03247
large tegument protein UL36; Provisional
 576-908 1.25e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 56.49  E-value: 1.25e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  576 ATPAAKPAAAAAESSSDSSSEDEEPAKPAKPATPAKAKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPA 655
Cdd:PHA03247  2578 SEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPA 2657

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  656 KAKPATPAKAKPATPAKAKPSTPAKAKPatPVAKPaaaaesssdssseDEEPATPAKAKPATPAKAKPATPVAKPAAAAE 735
Cdd:PHA03247  2658 PGRVSRPRRARRLGRAAQASSPPQRPRR--RAARP-------------TVGSLTSLADPPPPPPTPEPAPHALVSATPLP 2722

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  736 SSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSS 815
Cdd:PHA03247  2723 PGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPW 2802

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  816 SEDEEPATPAKAKPATPAKAKPATPAkAKPTTPAKAKPATPVAKPAAAAESSSDSSS----EDEEPATPAKAKPATPAK- 890
Cdd:PHA03247  2803 DPADPPAAVLAPAAALPPAASPAGPL-PPPTSAQPTAPPPPPGPPPPSLPLGGSVAPggdvRRRPPSRSPAAKPAAPARp 2881

                          330       340
                   ....*....|....*....|
gi 1839694142  891 --AKPATPAKAKPATPVAKP 908
Cdd:PHA03247  2882 pvRRLARPAVSRSTESFALP 2901
PHA03247 PHA03247
large tegument protein UL36; Provisional
 602-908 1.95e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 56.10  E-value: 1.95e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  602 KPAKPATPAKAKSATpAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKakPATPAKAKPATPAKAKPSTPAKA 681
Cdd:PHA03247  2682 RPRRRAARPTVGSLT-SLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPAL--PAAPAPPAVPAGPATPGGPARPA 2758

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  682 KPATPVAKPAAAAESSSDSSSEDEEPATPA-------KAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPAT 754
Cdd:PHA03247  2759 RPPTTAGPPAPAPPAAPAAGPPRRLTRPAVaslsesrESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTA 2838

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  755 PAKAKPATPVAKPAAAAESS--SDSSSEDEEPAKAKPATPAKAK----PATPVAKPAAAAESSSDSSSEDEEPATPAKAK 828
Cdd:PHA03247  2839 PPPPPGPPPPSLPLGGSVAPggDVRRRPPSRSPAAKPAAPARPPvrrlARPAVSRSTESFALPPDQPERPPQPQAPPPPQ 2918

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  829 PATPAKAkPATPAKAKPTTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAkPATPAKAKPATPAKAKPATPVAKP 908
Cdd:PHA03247  2919 PQPQPPP-PPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRV-AVPRFRVPQPAPSREAPASSTPPL 2996
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
721-908 3.43e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 54.88  E-value: 3.43e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  721 AKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPAT---PAKAKP 797
Cdd:PRK12323   372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARgpgGAPAPA 451

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  798 ATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPAT----PAKAKPTTPAKAKPATPVAKPAAAAESSSDSSSE 873
Cdd:PRK12323   452 PAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADddppPWEELPPEFASPAPAQPDAAPAGWVAESIPDPAT 531

                          170       180       190
                   ....*....|....*....|....*....|....*
gi 1839694142  874 DEEPATPAKAKPATPAKAKPATPAKAKPATPVAKP 908
Cdd:PRK12323   532 ADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPP 566
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
646-843 5.30e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 54.11  E-value: 5.30e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  646 PAKAKPATPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPAT 725
Cdd:PRK12323   374 PATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPA 453

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  726 PVAKPAAAAESSSDSSSEdeePAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPA 805
Cdd:PRK12323   454 PAAAPAAAARPAAAGPRP---VAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPA 530

                          170       180       190
                   ....*....|....*....|....*....|....*...
gi 1839694142  806 AAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKA 843
Cdd:PRK12323   531 TADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRA 568
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 759-902 1.00e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 52.95  E-value: 1.00e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  759 KPATPVAKPaaaAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPA 838
Cdd:PRK07994   360 HPAAPLPEP---EVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGAT 436

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1839694142  839 TPAKAKPTTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKP---ATPAKAKPA 902
Cdd:PRK07994   437 KAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKepvATPKALKKA 503
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
612-888 1.18e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 52.93  E-value: 1.18e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  612 AKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAkpATPAKAKPATPAKakpstpakakPATPVAKPA 691
Cdd:PRK07003   364 GGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAA--LAPKAAAAAAATR----------AEAPPAAPA 431

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  692 AAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKakPATPVAKPAAAA 771
Cdd:PRK07003   432 PPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAA--APSAATPAAVPD 509

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  772 ESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAK--PATPAKAKPATPAKAKPTtPA 849
Cdd:PRK07003   510 ARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDrgARAAAAAKPAAAPAAAPK-PA 588

                          250       260       270
                   ....*....|....*....|....*....|....*....
gi 1839694142  850 KAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATP 888
Cdd:PRK07003   589 APRVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPP 627
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
604-804 3.70e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 51.42  E-value: 3.70e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  604 AKPATPAKAKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPAKAKPATPAKAKPSTPAKAKP 683
Cdd:PRK12323   372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA 451

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  684 ATPVAKPAAAAESSsdsssedeePATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATP 763
Cdd:PRK12323   452 PAPAAAPAAAARPA---------AAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWV 522

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|.
gi 1839694142  764 VAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKP 804
Cdd:PRK12323   523 AESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAP 563
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 784-860 4.51e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 51.43  E-value: 4.51e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1839694142  784 PAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPTTPAKAKPATPVAKP 860
Cdd:PRK12270    43 APTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTP 119
PHA03247 PHA03247
large tegument protein UL36; Provisional
 659-1141 6.32e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.09  E-value: 6.32e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  659 PATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAK--AKPATPAKAKPATPVAKPAAAAES 736
Cdd:PHA03247  2553 PPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGdpRGPAPPSPLPPDTHAPDPPPPSPS 2632

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  737 SSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKP-ATPAKAKPATPVAKPAAaaesssdss 815
Cdd:PHA03247  2633 PAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRrAARPTVGSLTSLADPPP--------- 2703

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  816 sedeePATPAKAKPATPAKAKPATPAKAKPTTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPAT 895
Cdd:PHA03247  2704 -----PPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAG 2778

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  896 PAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPAAKPATPASKPATPTAKAAAAESSSESSSEDEEPAKAKPAISAKA 975
Cdd:PHA03247  2779 PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAP 2858

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  976 KPTTPAAKPAaaaesssdsdsdsedeaaKPAVKKPTPAAEAPASTPKASKKKAESSSDSSDSETEAKTTPAKPPVTNGKA 1055
Cdd:PHA03247  2859 GGDVRRRPPS------------------RSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQ 2920

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142 1056 ATPKAATPKAATPKTPAKPAESSSSDSSSEEEEEASKSAVKPATPAATPKTTPAAKAKESSSSDSSSEEdaprraatAPT 1135
Cdd:PHA03247  2921 PQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAP--------ASS 2992


                   ....*.
gi 1839694142 1136 TPTTNG 1141
Cdd:PHA03247  2993 TPPLTG 2998
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 784-905 7.36e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 50.48  E-value: 7.36e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  784 PAKAKPATPAKAKPATPVAKPAAAAESSSDSSsedeepATPAKAKPATPAKAKPATPAKAKPTTPAKAKPATPVAKPAAA 863
Cdd:PRK14951   373 AAPAEKKTPARPEAAAPAAAPVAQAAAAPAPA------AAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVA 446

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 1839694142  864 AESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPATPV 905
Cdd:PRK14951   447 LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARL 488
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 707-856 8.62e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 50.25  E-value: 8.62e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  707 PATPAKAKPATPAKAKPA-TPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAkPAAAAESSSDSSSEDEEPA 785
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAaSAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS-QLLAARQQLQRAQGATKAK 439

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1839694142  786 KAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPTTPAKAKPATP 856
Cdd:PRK07994   440 KSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTP 510
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 747-906 8.77e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 50.25  E-value: 8.77e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  747 PAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAK 826
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  827 AKPATPAKAKPATPAKAKPTTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPATPVA 906
Cdd:PRK07994   441 SEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAAEA 520
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 646-730 8.95e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 50.27  E-value: 8.95e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  646 PAKAKPATPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPaaaaesssdsssedeePATPAKAKPATPAKAKPAT 725
Cdd:PRK12270    51 AAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAA----------------PAAPPAAAAAAAPAAAAVE 114


                   ....*
gi 1839694142  726 PVAKP 730
Cdd:PRK12270   115 DEVTP 119
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 821-908 9.82e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 50.27  E-value: 9.82e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  821 PATPAKAKPATPAKAKPATPAKAKPTTPAKAKPATPVAKPAAaaesssdsssedeePATPAKAKPATPAKAKPATPAKAK 900
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAA--------------PAAPPKPAAAAAAAAAPAAPPAAA 103


                   ....*...
gi 1839694142  901 PATPVAKP 908
Cdd:PRK12270   104 AAAAPAAA 111
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
662-908 1.16e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 49.85  E-value: 1.16e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  662 PAKAKPATPAKAKPSTPAKAKPAtPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPVAkPAAAAESSSDSS 741
Cdd:PRK07003   360 PAVTGGGAPGGGVPARVAGAVPA-PGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEA-PPAAPAPPATAD 437

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  742 SEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPAtPAKAKPATPVAKPAAAAESSSDSSSEDEEP 821
Cdd:PRK07003   438 RGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPP-DAAFEPAPRAAAPSAATPAAVPDARAPAAA 516

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  822 ATPAKAKPATPAKAKPATPAKAKPTTPAKAKPATpVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPakaKP 901
Cdd:PRK07003   517 SREDAPAAAAPPAPEARPPTPAAAAPAARAGGAA-AALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAP---RV 592


                   ....*..
gi 1839694142  902 ATPVAKP 908
Cdd:PRK07003   593 AVQVPTP 599
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 821-908 1.39e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 49.50  E-value: 1.39e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  821 PATPAKAKPATPAKAKPATPAKAKPTTPAKAKPATPVAKPaaaaesssdsssedeepatPAKAKPATPAKAKPATPAKAK 900
Cdd:PRK12270    51 AAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAA-------------------AAAAAPAAPPAAAAAAAPAAA 111


                   ....*...
gi 1839694142  901 PATPVAKP 908
Cdd:PRK12270   112 AVEDEVTP 119
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 605-690 1.76e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 49.50  E-value: 1.76e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  605 KPATPAKAKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPAkakPATPAKAKPSTPAKAKPA 684
Cdd:PRK12270    37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAA---PAAPPAAAAAAAPAAAAV 113


                   ....*.
gi 1839694142  685 TPVAKP 690
Cdd:PRK12270   114 EDEVTP 119
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 601-730 2.16e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 48.71  E-value: 2.16e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  601 AKPAKPATPAKAKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATP---AKAKPATPAKAKPST 677
Cdd:PRK07994   366 PEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQqlqRAQGATKAKKSEPAA 445

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1839694142  678 PAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPAtPVAKP 730
Cdd:PRK07994   446 ASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKE-PVATP 497
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 601-727 3.73e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 48.17  E-value: 3.73e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  601 AKPAKPATPAKAKSATPAKAKPATPVAKPaaaaesssdssSEDEEPAKAKPATPAKAKPATPAKAKPATPAKAKPSTPAK 680
Cdd:PRK14951   373 AAPAEKKTPARPEAAAPAAAPVAQAAAAP-----------APAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAA 441

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 1839694142  681 AKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPV 727
Cdd:PRK14951   442 PAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARL 488
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 792-908 7.57e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 47.02  E-value: 7.57e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  792 PAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPA-TPAKAKPATPAKAKPTTPAKAKPATPVAKPAAAAESSSDS 870
Cdd:PRK14951   366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAaAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAV 445

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1839694142  871 SSEDEEPATPAKAKPATPAKAKPATPAKAKPATPVAKP 908
Cdd:PRK14951   446 ALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAP 483
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 618-690 7.79e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 47.19  E-value: 7.79e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1839694142  618 AKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKP 690
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAA 106
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 748-859 9.00e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 47.19  E-value: 9.00e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  748 AKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPaaaaesssdsssedeEPATPAKA 827
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAA---------------AAAAAPAA 98

                           90       100       110
                   ....*....|....*....|....*....|..
gi 1839694142  828 KPATPAKAKPATPAKAKPTTPAKAkPATPVAK 859
Cdd:PRK12270    99 PPAAAAAAAPAAAAVEDEVTPLRG-AAAAVAK 129
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 603-724 1.27e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 46.40  E-value: 1.27e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  603 PAKPATPAKAKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPAKAKPATPAKAKPSTPAKAK 682
Cdd:PRK07994   379 ASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALER 458

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 1839694142  683 PATPVAKPAAAAESSSDSSSEDEEPATPAKAKP---ATPAKAKPA 724
Cdd:PRK07994   459 LASVRPAPSALEKAPAKKEAYRWKATNPVEVKKepvATPKALKKA 503
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 646-730 1.52e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 46.42  E-value: 1.52e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  646 PAKAKPATPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAaesssdsssedeePATPAKAKPATPAKAKPAT 725
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPK-------------PAAAAAAAAAPAAPPAAAA 104


                   ....*
gi 1839694142  726 PVAKP 730
Cdd:PRK12270   105 AAAPA 109
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 650-800 1.67e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 46.01  E-value: 1.67e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  650 KPATPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPVAK 729
Cdd:PRK07994   360 HPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAK 439

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1839694142  730 PAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATP 800
Cdd:PRK07994   440 KSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTP 510
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 646-763 1.82e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 45.86  E-value: 1.82e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  646 PAKAKPATPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPAT 725
Cdd:PRK14951   373 AAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPP 452

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1839694142  726 PVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATP 763
Cdd:PRK14951   453 AQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTP 490
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 793-890 1.88e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 46.04  E-value: 1.88e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  793 AKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPTtpAKAKPATPVAKPAAAAESSSDSSS 872
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPA--AAAAAAAAPAAPPAAAAAAAPAAA 111

                           90
                   ....*....|....*...
gi 1839694142  873 EDEEPATPAKAKPATPAK 890
Cdd:PRK12270   112 AVEDEVTPLRGAAAAVAK 129
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 647-767 3.82e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 44.88  E-value: 3.82e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  647 AKAKPATPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPaaaaesssdsssedeePATPAKAKPATPAKAKPATP 726
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAA----------------AAPAAPPKPAAAAAAAAAPA 97

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 1839694142  727 vakpaaaaesssdsssedeEPAKAKPATPAKAKPATPVAKP 767
Cdd:PRK12270    98 -------------------APPAAAAAAAPAAAAVEDEVTP 119
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
601-767 4.03e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 44.87  E-value: 4.03e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  601 AKPAKPATPAKAKSATPAKAKPAtpVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPatPAKAKPATPAKAKPSTPAK 680
Cdd:PRK12323   407 AAAPAAAAAARAVAAAPARRSPA--PEALAAARQASARGPGGAPAPAPAPAAAPAAAAR--PAAAGPRPVAAAAAAAPAR 482

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  681 AKPATPVAkpaaaaESSSDSSSEDEEPATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKP 760
Cdd:PRK12323   483 AAPAAAPA------PADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAA 556


                   ....*..
gi 1839694142  761 ATPVAKP 767
Cdd:PRK12323   557 TEPVVAP 563
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 747-857 5.38e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 44.32  E-value: 5.38e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  747 PAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAkakPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAK 826
Cdd:PRK14951   381 PARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPA---AAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAP 457

                           90       100       110
                   ....*....|....*....|....*....|.
gi 1839694142  827 AKPATPAKAKPATPAKAKPTTPAKAKPATPV 857
Cdd:PRK14951   458 ETVAIPVRVAPEPAVASAAPAPAAAPAAARL 488
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 707-821 6.12e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.93  E-value: 6.12e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  707 PATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAK 786
Cdd:PRK14951   378 KKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAP 457

                           90       100       110
                   ....*....|....*....|....*....|....*
gi 1839694142  787 AKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEP 821
Cdd:PRK14951   458 ETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 711-804 6.84e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 44.11  E-value: 6.84e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  711 AKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPaaaaesssDSSSEDEEPAKAKPA 790
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAA--------AAAAAPAAPPAAAAA 105

                           90
                   ....*....|....
gi 1839694142  791 TPAKAKPATPVAKP 804
Cdd:PRK12270   106 AAPAAAAVEDEVTP 119
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 646-767 9.13e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.55  E-value: 9.13e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  646 PAKAKPATPAKAKpATPAKAKPATPAKAKPSTPAKAkpATPVAkPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPAT 725
Cdd:PRK14951   366 PAAAAEAAAPAEK-KTPARPEAAAPAAAPVAQAAAA--PAPAA-APAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAA 441

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 1839694142  726 PVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKP 767
Cdd:PRK14951   442 PAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAP 483
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 601-908 1.11e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 43.44  E-value: 1.11e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  601 AKPAKPATPAKAKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPAKAKPATPAKAKPSTPAK 680
Cdd:PRK07764   391 AGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAP 470

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  681 AKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPA---------------KAKPATPVAK---------------- 729
Cdd:PRK07764   471 AAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAatlrerwpeilaavpKRSRKTWAILlpeatvlgvrgdtlvl 550

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  730 ------------------------------------------PAAAAESSSDSSSEDEEPAKAKPATPakAKPATPVAKP 767
Cdd:PRK07764   551 gfstgglarrfaspgnaevlvtalaeelggdwqveavvgpapGAAGGEGPPAPASSGPPEEAARPAAP--AAPAAPAAPA 628

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  768 AAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPTT 847
Cdd:PRK07764   629 PAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAAT 708

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1839694142  848 PAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPATPVAKP 908
Cdd:PRK07764   709 PPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAA 769
motB PRK12799
flagellar motor protein MotB; Reviewed
 646-766 1.52e-03

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 42.40  E-value: 1.52e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  646 PAKAKPATPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPakAKPATPAKAKPAT 725
Cdd:PRK12799   300 PVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSDVTLPGTV--ALPAAEPVNMQPQ 377

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 1839694142  726 PVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAK 766
Cdd:PRK12799   378 PMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPVSPTSR 418
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 615-767 2.54e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 42.16  E-value: 2.54e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  615 ATPAKAKPATPVAKPAAaaesssdsssedeepakakPATPAKAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAA 694
Cdd:PRK07994   362 AAPLPEPEVPPQSAAPA-------------------ASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQL 422

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1839694142  695 ESSSDSSSEDEEPATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKP--ATPAKAKPATPVAKP 767
Cdd:PRK07994   423 LAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRwkATNPVEVKKEPVATP 497
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 617-747 3.51e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 41.62  E-value: 3.51e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  617 PAKAKPATPVAKPAAAAESSSDSssedeePAKAKPATPA--KAKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAA 694
Cdd:PRK14951   366 PAAAAEAAAPAEKKTPARPEAAA------PAAAPVAQAAaaPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPA 439

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1839694142  695 ESSSDSSSEDEEPATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEP 747
Cdd:PRK14951   440 AAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 657-857 3.54e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.51  E-value: 3.54e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  657 AKPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAK-PATPAKAKPATPVAKPAAAAE 735
Cdd:PRK07764   586 AVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPaPGVAAPEHHPKHVAVPDASDG 665

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  736 SSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSS 815
Cdd:PRK07764   666 GDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEP 745

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 1839694142  816 SEDEEPATPAKAKPATPAKAKPATPAKAKPTTPAKAKPATPV 857
Cdd:PRK07764   746 DDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAE 787
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 627-856 3.54e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.51  E-value: 3.54e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  627 AKPAAAAESSSDSSSEDEEPAKAKPATPakakPATPAKAKPATPAKAKPSTPAKAKPATPVAKPAAAAESSSDSSSEDEE 706
Cdd:PRK07764   591 APGAAGGEGPPAPASSGPPEEAARPAAP----AAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGG 666

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  707 PATPAKAKPATPAKAKPAtpvakpaaaaesssdsssedeePAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAK 786
Cdd:PRK07764   667 DGWPAKAGGAAPAAPPPA----------------------PAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQA 724

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  787 AKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPTTPAKAKPATP 856
Cdd:PRK07764   725 AQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMD 794
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 707-787 7.00e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 40.64  E-value: 7.00e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  707 PATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAK 786
Cdd:PRK12270    46 AAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPLRGAAA 125


                   .
gi 1839694142  787 A 787
Cdd:PRK12270   126 A 126
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
604-726 7.99e-03

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 40.17  E-value: 7.99e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  604 AKPATPAKAKSATPAKAkpatPVAKPAAAAESSSDSSSEDEEPAKAKPATPAK-AKPATPAKAKPATPAKAKPSTPAKAK 682
Cdd:PRK12373   202 GKARYNASKALAEDIGD----TVKRIDGTEVPLLAPWQGDAAPVPPSEAARPKsADAETNAALKTPATAPKAAAKNAKAP 277

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 1839694142  683 PATPVAKPAAAAESSSDSSSEDEEPATPAKA-KPATPAKAKPATP 726
Cdd:PRK12373   278 EAQPVSGTAAAEPAPKEAAKAAAAAAKPALEdKPRPLGIARPGGA 322
PRK05035 PRK05035
electron transport complex protein RnfC; Provisional
 602-838 8.34e-03

electron transport complex protein RnfC; Provisional


Pssm-ID: 235334 [Multi-domain]  Cd Length: 695  Bit Score: 40.32  E-value: 8.34e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  602 KPAKPATPAKAKSATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPAKAKPATPAKAKPSTPAKA 681
Cdd:PRK05035   466 KAAREARHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAADP 545

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  682 KPATPVAkpaaaAESSSDSSSEDEEPATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPakAKPATPAKAKPA 761
Cdd:PRK05035   546 KKAAVAA-----AIARAKAKKAAQQAANAEAEEEVDPKKAAVAAAIARAKAKKAAQQAASAEPEEQ--VAEVDPKKAAVA 618

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  762 TPVAKpaaaaeSSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPATPAKAKPAT---PAKAKPA 838
Cdd:PRK05035   619 AAIAR------AKAKKAEQQANAEPEEPVDPRKAAVAAAIARAKARKAAQQQANAEPEEAEDPKKAAVAAaiaRAKAKKA 692
motB PRK12799
flagellar motor protein MotB; Reviewed
 684-803 8.74e-03

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 40.08  E-value: 8.74e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  684 ATPVAKPAAAAESSSDSSSEDEEPATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAK-AKPATPAKAKPAT 762
Cdd:PRK12799   298 TVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSDVTLPGTvALPAAEPVNMQPQ 377

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 1839694142  763 PVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAK 803
Cdd:PRK12799   378 PMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPVSPTSR 418
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 707-905 8.92e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.35  E-value: 8.92e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  707 PATPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAKAKPATPAKAKPATPVAKPAAAAESSSDSSSEDEEPAK 786
Cdd:PRK07764   596 GGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGG 675

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1839694142  787 AKPATPAKAKPATPVAKPAAAAEsssdsssEDEEPATPAKAKPATPAKAKPATPAKAKPTTPAKAKPATPVAKPAAAAES 866
Cdd:PRK07764   676 AAPAAPPPAPAPAAPAAPAGAAP-------AQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDP 748

                          170       180       190
                   ....*....|....*....|....*....|....*....
gi 1839694142  867 SSDSSSEDEEPATPAKAKPATPAKAKPATPAKAKPATPV 905
Cdd:PRK07764   749 PDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAE 787
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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