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Conserved domains on  [gi|1759093706|ref|XP_031018172|]
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uncharacterized protein FIESC28_03763 [Fusarium coffeatum]

Protein Classification

60S ribosomal protein L23( domain architecture ID 10015173)

60S ribosomal protein L23

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PTZ00054 PTZ00054
60S ribosomal protein L23; Provisional
1-138 1.42e-81

60S ribosomal protein L23; Provisional


:

Pssm-ID: 185418  Cd Length: 139  Bit Score: 236.16  E-value: 1.42e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759093706   1 MAKISRGAPGGKLKMTLGLPVGAVMNCADNSGARNLYIIAVKGIGARLNRLPAGGVGDMVMATVKKGKPELRKKVHPAVI 80
Cdd:PTZ00054    1 MKRGRGGVGGNKFRVTLGLPVGAVVNCADNSGAKNLYIIAVKGIHGRLNRLPSASLGDMVLATVKKGKPELRKKVLNAVI 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1759093706  81 VRQSKPWKRFDGVFLYFEDNAGVIVNPKGEMKGSAITGPVGKEAAELWPRIASNSGVV 138
Cdd:PTZ00054   81 IRQRKAWRRKDGVFIYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPKISSAAPAI 138
 
Name Accession Description Interval E-value
PTZ00054 PTZ00054
60S ribosomal protein L23; Provisional
1-138 1.42e-81

60S ribosomal protein L23; Provisional


Pssm-ID: 185418  Cd Length: 139  Bit Score: 236.16  E-value: 1.42e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759093706   1 MAKISRGAPGGKLKMTLGLPVGAVMNCADNSGARNLYIIAVKGIGARLNRLPAGGVGDMVMATVKKGKPELRKKVHPAVI 80
Cdd:PTZ00054    1 MKRGRGGVGGNKFRVTLGLPVGAVVNCADNSGAKNLYIIAVKGIHGRLNRLPSASLGDMVLATVKKGKPELRKKVLNAVI 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1759093706  81 VRQSKPWKRFDGVFLYFEDNAGVIVNPKGEMKGSAITGPVGKEAAELWPRIASNSGVV 138
Cdd:PTZ00054   81 IRQRKAWRRKDGVFIYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPKISSAAPAI 138
uL14_arch TIGR03673
50S ribosomal protein uL14, archaeal form; Part of the 50S ribosomal subunit. Forms a cluster ...
10-138 1.82e-53

50S ribosomal protein uL14, archaeal form; Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L24e, part of which may contact the 16S rRNA in 2 intersubunit bridges.


Pssm-ID: 274716  Cd Length: 131  Bit Score: 164.45  E-value: 1.82e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759093706  10 GGKLKMTLGLPVGAVMNCADNSGARNLYIIAVKGIGARLNRLPAGGVGDMVMATVKKGKPELRKKVHPAVIVRQSKPWKR 89
Cdd:TIGR03673   2 GIRAGITRALPVGALLVCADNTGAKEVEVISVKGYKGVKRRLPSAGVGDMVVVSVKKGTPEMRKQVFRAVVVRQRKEYRR 81
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1759093706  90 FDGVFLYFEDNAGVIVNPKGEMKGSAITGPVGKEAAELWPRIASNSGVV 138
Cdd:TIGR03673  82 PDGTRVKFEDNAAVIVTPDGEPKGTEIKGPVAREAAERWPKIASIASII 130
Ribosomal_L14 pfam00238
Ribosomal protein L14p/L23e;
20-133 1.58e-51

Ribosomal protein L14p/L23e;


Pssm-ID: 425547  Cd Length: 119  Bit Score: 159.09  E-value: 1.58e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759093706  20 PVGAVMNCADNSGARNLYIIAVKGIGarlnRLPAGGVGDMVMATVKKGKP---ELRKKVHPAVIVRQSKPWKRFDGVFLY 96
Cdd:pfam00238   1 QVGTRLNVADNSGAKEVMCIKVLGGS----GRRYASVGDIIVVSVKKAKPngkVKKGDVVKAVVVRTKKEIRRPDGSYIR 76
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1759093706  97 FEDNAGVIVNPKGEMKGSAITGPVGKEAAEL-WPRIAS 133
Cdd:pfam00238  77 FDDNAAVLINDKGEPKGTRIFGPVARELREKkFPKIVS 114
Ribosomal_uL14 cd00337
Ribosomal protein uL14; Ribosomal protein uL14 (L14 in bacteria and mitochondria, L23 in ...
20-133 8.29e-45

Ribosomal protein uL14; Ribosomal protein uL14 (L14 in bacteria and mitochondria, L23 in eukaryotes, L38 in fungal mitochondria) is part of the large ribosomal subunit, located between the centers of activity for peptidyl transferase and GTPase. uL14 has an "all beta" fold that binds 23S rRNA. Ribosomal proteins, which are components of ribosomal subunits, are RNA-binding proteins that might have multiple extra ribosomal functions and may be involved in tumorigenesis in mammals.


Pssm-ID: 466774  Cd Length: 114  Bit Score: 142.21  E-value: 8.29e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759093706  20 PVGAVMNCADNSGARNLYIIAVKGIgarlNRLPAGGVGDMVMATVKKGKPE---LRKKVHPAVIVRQSKPWKRFDGVFLY 96
Cdd:cd00337     1 QVGTRLNVADNSGAKKVKCIKVLGK----KGRRYAGVGDIIVVSVKKAKPEkkvKKGEVVKAVIVRTKKEIRRKDGSYIR 76
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1759093706  97 FEDNAGVIVNPKGEMKGSAITGPVGKE-AAELWPRIAS 133
Cdd:cd00337    77 FDDNAVVLINKKGEPLGTRIFGPVARElRAKKFPKILS 114
RplN COG0093
Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L14 ...
18-133 2.35e-41

Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L14 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439863  Cd Length: 122  Bit Score: 133.64  E-value: 2.35e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759093706  18 GLPVGAVMNCADNSGARNLYIIAVKGIGarlnRLPAGGVGDMVMATVKKGKPEL---RKKVHPAVIVRQSKPWKRFDGVF 94
Cdd:COG0093     1 MIQQGTRLKVADNSGAKEVMCIKVLGGS----RRRYAGVGDIIVVSVKKATPEGkvkKGQVVKAVVVRTKKEIRRPDGSY 76
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1759093706  95 LYFEDNAGVIVNPKGEMKGSAITGPVGKEAAE-LWPRIAS 133
Cdd:COG0093    77 IRFDDNAAVLINDDGEPKGTRIFGPVARELREkGFMKIAS 116
 
Name Accession Description Interval E-value
PTZ00054 PTZ00054
60S ribosomal protein L23; Provisional
1-138 1.42e-81

60S ribosomal protein L23; Provisional


Pssm-ID: 185418  Cd Length: 139  Bit Score: 236.16  E-value: 1.42e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759093706   1 MAKISRGAPGGKLKMTLGLPVGAVMNCADNSGARNLYIIAVKGIGARLNRLPAGGVGDMVMATVKKGKPELRKKVHPAVI 80
Cdd:PTZ00054    1 MKRGRGGVGGNKFRVTLGLPVGAVVNCADNSGAKNLYIIAVKGIHGRLNRLPSASLGDMVLATVKKGKPELRKKVLNAVI 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1759093706  81 VRQSKPWKRFDGVFLYFEDNAGVIVNPKGEMKGSAITGPVGKEAAELWPRIASNSGVV 138
Cdd:PTZ00054   81 IRQRKAWRRKDGVFIYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPKISSAAPAI 138
rpl14p PRK08571
50S ribosomal protein L14P; Reviewed
10-133 5.79e-58

50S ribosomal protein L14P; Reviewed


Pssm-ID: 181478  Cd Length: 132  Bit Score: 175.87  E-value: 5.79e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759093706  10 GGKLKMTLGLPVGAVMNCADNSGARNLYIIAVKGIGARLNRLPAGGVGDMVMATVKKGKPELRKKVHPAVIVRQSKPWKR 89
Cdd:PRK08571    3 GIRSKVTRGLPVGARLVCADNTGAKEVEIISVKGYKGVKRRLPKAGVGDMVVVSVKKGTPEMRKQVLRAVVVRQRKEYRR 82
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1759093706  90 FDGVFLYFEDNAGVIVNPKGEMKGSAITGPVGKEAAELWPRIAS 133
Cdd:PRK08571   83 PDGTRVKFEDNAAVIVTPEGTPKGTEIKGPVAREAAERWPKIAS 126
uL14_arch TIGR03673
50S ribosomal protein uL14, archaeal form; Part of the 50S ribosomal subunit. Forms a cluster ...
10-138 1.82e-53

50S ribosomal protein uL14, archaeal form; Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L24e, part of which may contact the 16S rRNA in 2 intersubunit bridges.


Pssm-ID: 274716  Cd Length: 131  Bit Score: 164.45  E-value: 1.82e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759093706  10 GGKLKMTLGLPVGAVMNCADNSGARNLYIIAVKGIGARLNRLPAGGVGDMVMATVKKGKPELRKKVHPAVIVRQSKPWKR 89
Cdd:TIGR03673   2 GIRAGITRALPVGALLVCADNTGAKEVEVISVKGYKGVKRRLPSAGVGDMVVVSVKKGTPEMRKQVFRAVVVRQRKEYRR 81
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1759093706  90 FDGVFLYFEDNAGVIVNPKGEMKGSAITGPVGKEAAELWPRIASNSGVV 138
Cdd:TIGR03673  82 PDGTRVKFEDNAAVIVTPDGEPKGTEIKGPVAREAAERWPKIASIASII 130
Ribosomal_L14 pfam00238
Ribosomal protein L14p/L23e;
20-133 1.58e-51

Ribosomal protein L14p/L23e;


Pssm-ID: 425547  Cd Length: 119  Bit Score: 159.09  E-value: 1.58e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759093706  20 PVGAVMNCADNSGARNLYIIAVKGIGarlnRLPAGGVGDMVMATVKKGKP---ELRKKVHPAVIVRQSKPWKRFDGVFLY 96
Cdd:pfam00238   1 QVGTRLNVADNSGAKEVMCIKVLGGS----GRRYASVGDIIVVSVKKAKPngkVKKGDVVKAVVVRTKKEIRRPDGSYIR 76
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1759093706  97 FEDNAGVIVNPKGEMKGSAITGPVGKEAAEL-WPRIAS 133
Cdd:pfam00238  77 FDDNAAVLINDKGEPKGTRIFGPVARELREKkFPKIVS 114
Ribosomal_uL14 cd00337
Ribosomal protein uL14; Ribosomal protein uL14 (L14 in bacteria and mitochondria, L23 in ...
20-133 8.29e-45

Ribosomal protein uL14; Ribosomal protein uL14 (L14 in bacteria and mitochondria, L23 in eukaryotes, L38 in fungal mitochondria) is part of the large ribosomal subunit, located between the centers of activity for peptidyl transferase and GTPase. uL14 has an "all beta" fold that binds 23S rRNA. Ribosomal proteins, which are components of ribosomal subunits, are RNA-binding proteins that might have multiple extra ribosomal functions and may be involved in tumorigenesis in mammals.


Pssm-ID: 466774  Cd Length: 114  Bit Score: 142.21  E-value: 8.29e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759093706  20 PVGAVMNCADNSGARNLYIIAVKGIgarlNRLPAGGVGDMVMATVKKGKPE---LRKKVHPAVIVRQSKPWKRFDGVFLY 96
Cdd:cd00337     1 QVGTRLNVADNSGAKKVKCIKVLGK----KGRRYAGVGDIIVVSVKKAKPEkkvKKGEVVKAVIVRTKKEIRRKDGSYIR 76
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1759093706  97 FEDNAGVIVNPKGEMKGSAITGPVGKE-AAELWPRIAS 133
Cdd:cd00337    77 FDDNAVVLINKKGEPLGTRIFGPVARElRAKKFPKILS 114
RplN COG0093
Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L14 ...
18-133 2.35e-41

Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L14 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439863  Cd Length: 122  Bit Score: 133.64  E-value: 2.35e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759093706  18 GLPVGAVMNCADNSGARNLYIIAVKGIGarlnRLPAGGVGDMVMATVKKGKPEL---RKKVHPAVIVRQSKPWKRFDGVF 94
Cdd:COG0093     1 MIQQGTRLKVADNSGAKEVMCIKVLGGS----RRRYAGVGDIIVVSVKKATPEGkvkKGQVVKAVVVRTKKEIRRPDGSY 76
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1759093706  95 LYFEDNAGVIVNPKGEMKGSAITGPVGKEAAE-LWPRIAS 133
Cdd:COG0093    77 IRFDDNAAVLINDDGEPKGTRIFGPVARELREkGFMKIAS 116
rplN_bact TIGR01067
ribosomal protein L14, bacterial/organelle; This model distinguishes bacterial and most ...
22-123 7.72e-19

ribosomal protein L14, bacterial/organelle; This model distinguishes bacterial and most organellar examples of ribosomal protein L14 from all archaeal and eukaryotic forms. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273426  Cd Length: 122  Bit Score: 76.20  E-value: 7.72e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759093706  22 GAVMNCADNSGARNLYIIAVkgIGARLNRLpaGGVGDMVMATVKKGKPELRKK---VHPAVIVRQSKPWKRFDGVFLYFE 98
Cdd:TIGR01067   5 QSRLNVADNSGAKKVQCIKV--LGGSPRRY--ATVGDVIVVVVKDAIPNGKVKkgdVVKAVIVRTKKGVRRKDGSYIRFD 80
                          90       100
                  ....*....|....*....|....*
gi 1759093706  99 DNAGVIVNPKGEMKGSAITGPVGKE 123
Cdd:TIGR01067  81 DNACVLINKNKEPRGTRIFGPVARE 105
rpl14 CHL00057
ribosomal protein L14
26-123 1.16e-18

ribosomal protein L14


Pssm-ID: 176997  Cd Length: 122  Bit Score: 75.69  E-value: 1.16e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759093706  26 NCADNSGARNLYIIAVKGIGarlNRLPAGgVGDMVMATVKKGKPEL---RKKVHPAVIVRQSKPWKRFDGVFLYFEDNAG 102
Cdd:CHL00057    9 NVADNSGARKLMCIRVLGAS---NRKYAH-IGDVIIAVVKEAVPNMplkRSEVVRAVIVRTCKELKRDNGMIIRFDDNAA 84
                          90       100
                  ....*....|....*....|.
gi 1759093706 103 VIVNPKGEMKGSAITGPVGKE 123
Cdd:CHL00057   85 VVIDQEGNPKGTRVFGPIARE 105
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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