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Conserved domains on  [gi|1720355914|ref|XP_030110987|]
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ciliary rootlet coiled-coil protein 2 isoform X6 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Smc super family cl34174
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 820-1421 1.19e-25

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 115.42  E-value: 1.19e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  820 QQALSLKDAEKSLLSKELSGAHRELERARQEAQNQQVQAEATVTTMTKELRTLQVQFEEAISTHQReadtLREKLREIAA 899
Cdd:COG1196    213 ERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEE----LELELEEAQA 288

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  900 ERSSVRREAEELQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKA 979
Cdd:COG1196    289 EEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  980 SLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDA 1059
Cdd:COG1196    369 EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1060 QHRQKNLQESLELQRQVAEAQAAHDGVQKEVLGLRQKLAEVEASGETRAKQLEGHLCESQRAeqtlqaelcritrKLQEA 1139
Cdd:COG1196    449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGV-------------KAALL 515

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1140 SNQADSLQRSLDNACSRVHVLEQELAKAEGARCNAEAQLGRLWSTLCSGLGQSRNLLASPKRPHSPTTGSSqtrpgrqrt 1219
Cdd:COG1196    516 LAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARA--------- 586

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1220 spptrsySPARWPSPVPVDPKSEVIDVAFVRDALRDLVQGLLEAQQERDNSGIQVANLSSQLSEAERERLRLQSRVEQLQ 1299
Cdd:COG1196    587 -------ALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAG 659

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1300 RDLAdaEEGQRRAESALQSAQAARALQKEALQRLETEHLASARAAGQERRRLQEQVDTLRQALEESSRPSQSLADKGRLL 1379
Cdd:COG1196    660 GSLT--GGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREEL 737

                          570       580       590       600
                   ....*....|....*....|....*....|....*....|..
gi 1720355914 1380 EQPLQQVLPHSRRDRAERRALREQTTSLRTERARLQGELAAL 1421
Cdd:COG1196    738 LEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
SMC_prok_B super family cl37069
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 286-1103 9.29e-24

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


The actual alignment was detected with superfamily member TIGR02168:

Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 109.38  E-value: 9.29e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  286 AAIERRQQREQELRLRLESSQEEAaglrEQLSGYRQELRTSQRLLQDRAQEHEDLLgQLEAQRQEAQLSqASVHLLEREK 365
Cdd:TIGR02168  165 AGISKYKERRKETERKLERTRENL----DRLEDILNELERQLKSLERQAEKAERYK-ELKAELRELELA-LLVLRLEELR 238

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  366 EALETTMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSER---SLRELEASQGRVEQLEEKVSGLRKEL 442
Cdd:TIGR02168  239 EELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKElyaLANEISRLEQQKQILRERLANLERQL 318

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  443 ATSREALSSMQLQRDILETEKESLHGALAQAEsgnADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQL 522
Cdd:TIGR02168  319 EELEAQLEELESKLDELAEELAELEEKLEELK---EELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI 395

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  523 EQERDQLREQQKMLQQeQAGMREQLTQTGQQLG--LIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVT 600
Cdd:TIGR02168  396 ASLNNEIERLEARLER-LEDRRERLQQEIEELLkkLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAE 474

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  601 NKKQALEKQLAQSlqdqEAQMDILQEALHEKNTLSEERAQLLAKQEALERH----SELVTKEA-------ADLRAERNSL 669
Cdd:TIGR02168  475 QALDAAERELAQL----QARLDSLERLQENLEGFSEGVKALLKNQSGLSGIlgvlSELISVDEgyeaaieAALGGRLQAV 550

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  670 ----------------ENSLFEAQRLTTQLQTQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQA 733
Cdd:TIGR02168  551 vvenlnaakkaiaflkQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDD 630

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  734 AQQEQEAQLALERQELAHTEDLARLHREkdtlSLSLAEEKEAAARWMEQQKELLtRSAADREALQGEIQNLKQERDESLL 813
Cdd:TIGR02168  631 LDNALELAKKLRPGYRIVTLDGDLVRPG----GVITGGSAKTNSSILERRREIE-ELEEKIEELEEKIAELEKALAELRK 705

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  814 QLEhEMQQALSLKDAEKSLLSKELSGAHRELERARQEAQnqqvQAEATVTTMTKELRTLQVQFEEAisthQREADTLREK 893
Cdd:TIGR02168  706 ELE-ELEEELEQLRKELEELSRQISALRKDLARLEAEVE----QLEERIAQLSKELTELEAEIEEL----EERLEEAEEE 776

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  894 LREIAAERSSVRREAEELQAQLNVAHERLAELRQELQAseesregLQREALGARRALEDEVQEKDVLQHSNTELRASIHR 973
Cdd:TIGR02168  777 LAEAEAEIEELEAQIEQLKEELKALREALDELRAELTL-------LNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  974 AEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQA 1053
Cdd:TIGR02168  850 LSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLEL 929

                          810       820       830       840       850
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1720355914 1054 QVSRdAQHRQKNLQESL--ELQRQVAEAQAAHDGVQKEVLGLRQKLAEVEAS 1103
Cdd:TIGR02168  930 RLEG-LEVRIDNLQERLseEYSLTLEEAEALENKIEDDEEEARRRLKRLENK 980
Smc super family cl34174
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 21-472 2.81e-06

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 52.25  E-value: 2.81e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914   21 LSQVNTLLRQQLEHMQKANDTLARELTRATHSLVHLQRKLELQESQRLSLRqpRDILPLWRQAKALQTHLAELRASTERG 100
Cdd:COG1196    328 LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE--EELEELAEELLEALRAAAELAAQLEEL 405

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  101 LTDVQADMTRTAQRLHMACLNLDSHLRLTASsmTSDLEQRLREQAREMLQLQGQWAAEKVALQARLSEQTLLVEKLSVQK 180
Cdd:COG1196    406 EEAEEALLERLERLEEELEELEEALAELEEE--EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELL 483

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  181 EQGERAILTLKSDIQRLKSR----RSGGQLAVDELRDEVESLHHVLASIKEVAQSDAMCPELAWSSSIEVREAQA----- 251
Cdd:COG1196    484 EELAEAAARLLLLLEAEADYegflEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVaaaai 563

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  252 ----RLRSPPRSVSPHQRMSPARTSSPTSLHPALQAVQAAIERRQQREQELRLRLESSQEEAAGLREQLSGYRQELRT-- 325
Cdd:COG1196    564 eylkAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTla 643

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  326 -------------SQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVHLLEREKEALETTMEELRAKADIREAETQKLEVT 392
Cdd:COG1196    644 grlrevtlegeggSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEE 723

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  393 NAELRRSLLLRAEQKAELAQQSERSLRE----------LEASQGRVEQLEEKVSGLRK-------ELATSREALSSMQLQ 455
Cdd:COG1196    724 EALEEQLEAEREELLEELLEEEELLEEEaleelpeppdLEELERELERLEREIEALGPvnllaieEYEELEERYDFLSEQ 803

                          490
                   ....*....|....*..
gi 1720355914  456 RDILETEKESLHGALAQ 472
Cdd:COG1196    804 REDLEEARETLEEAIEE 820
COG4913 super family cl25907
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1336-1538 8.34e-06

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


The actual alignment was detected with superfamily member COG4913:

Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 50.68  E-value: 8.34e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1336 EHLASARAAGQERRRLQEQVDTLRQALEESSRPSQSLADKGRLleQPLQQVLPHsRRDRAERRALREQTTSLRTERARLQ 1415
Cdd:COG4913    232 EHFDDLERAHEALEDAREQIELLEPIRELAERYAAARERLAEL--EYLRAALRL-WFAQRRLELLEAELEELRAELARLE 308

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1416 GELAALRTRLIQTEQETLKKEEDRAML-GAKKELLLQSLSHLHQEVDGALRQSQQLQAQMAELEQ---AHTQRLQELAAQ 1491
Cdd:COG4913    309 AELERLEARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEALLAALGLplpASAEEFAALRAE 388

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*..
gi 1720355914 1492 HQRDLAAEAQRLHEAQLQATQALEScEQIHQQRVKVLERQVASLKKR 1538
Cdd:COG4913    389 AAALLEALEEELEALEEALAEAEAA-LRDLRRELRELEAEIASLERR 434
 
Name Accession Description Interval E-value
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 820-1421 1.19e-25

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 115.42  E-value: 1.19e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  820 QQALSLKDAEKSLLSKELSGAHRELERARQEAQNQQVQAEATVTTMTKELRTLQVQFEEAISTHQReadtLREKLREIAA 899
Cdd:COG1196    213 ERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEE----LELELEEAQA 288

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  900 ERSSVRREAEELQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKA 979
Cdd:COG1196    289 EEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  980 SLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDA 1059
Cdd:COG1196    369 EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1060 QHRQKNLQESLELQRQVAEAQAAHDGVQKEVLGLRQKLAEVEASGETRAKQLEGHLCESQRAeqtlqaelcritrKLQEA 1139
Cdd:COG1196    449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGV-------------KAALL 515

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1140 SNQADSLQRSLDNACSRVHVLEQELAKAEGARCNAEAQLGRLWSTLCSGLGQSRNLLASPKRPHSPTTGSSqtrpgrqrt 1219
Cdd:COG1196    516 LAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARA--------- 586

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1220 spptrsySPARWPSPVPVDPKSEVIDVAFVRDALRDLVQGLLEAQQERDNSGIQVANLSSQLSEAERERLRLQSRVEQLQ 1299
Cdd:COG1196    587 -------ALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAG 659

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1300 RDLAdaEEGQRRAESALQSAQAARALQKEALQRLETEHLASARAAGQERRRLQEQVDTLRQALEESSRPSQSLADKGRLL 1379
Cdd:COG1196    660 GSLT--GGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREEL 737

                          570       580       590       600
                   ....*....|....*....|....*....|....*....|..
gi 1720355914 1380 EQPLQQVLPHSRRDRAERRALREQTTSLRTERARLQGELAAL 1421
Cdd:COG1196    738 LEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 286-1103 9.29e-24

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 109.38  E-value: 9.29e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  286 AAIERRQQREQELRLRLESSQEEAaglrEQLSGYRQELRTSQRLLQDRAQEHEDLLgQLEAQRQEAQLSqASVHLLEREK 365
Cdd:TIGR02168  165 AGISKYKERRKETERKLERTRENL----DRLEDILNELERQLKSLERQAEKAERYK-ELKAELRELELA-LLVLRLEELR 238

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  366 EALETTMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSER---SLRELEASQGRVEQLEEKVSGLRKEL 442
Cdd:TIGR02168  239 EELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKElyaLANEISRLEQQKQILRERLANLERQL 318

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  443 ATSREALSSMQLQRDILETEKESLHGALAQAEsgnADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQL 522
Cdd:TIGR02168  319 EELEAQLEELESKLDELAEELAELEEKLEELK---EELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI 395

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  523 EQERDQLREQQKMLQQeQAGMREQLTQTGQQLG--LIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVT 600
Cdd:TIGR02168  396 ASLNNEIERLEARLER-LEDRRERLQQEIEELLkkLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAE 474

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  601 NKKQALEKQLAQSlqdqEAQMDILQEALHEKNTLSEERAQLLAKQEALERH----SELVTKEA-------ADLRAERNSL 669
Cdd:TIGR02168  475 QALDAAERELAQL----QARLDSLERLQENLEGFSEGVKALLKNQSGLSGIlgvlSELISVDEgyeaaieAALGGRLQAV 550

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  670 ----------------ENSLFEAQRLTTQLQTQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQA 733
Cdd:TIGR02168  551 vvenlnaakkaiaflkQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDD 630

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  734 AQQEQEAQLALERQELAHTEDLARLHREkdtlSLSLAEEKEAAARWMEQQKELLtRSAADREALQGEIQNLKQERDESLL 813
Cdd:TIGR02168  631 LDNALELAKKLRPGYRIVTLDGDLVRPG----GVITGGSAKTNSSILERRREIE-ELEEKIEELEEKIAELEKALAELRK 705

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  814 QLEhEMQQALSLKDAEKSLLSKELSGAHRELERARQEAQnqqvQAEATVTTMTKELRTLQVQFEEAisthQREADTLREK 893
Cdd:TIGR02168  706 ELE-ELEEELEQLRKELEELSRQISALRKDLARLEAEVE----QLEERIAQLSKELTELEAEIEEL----EERLEEAEEE 776

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  894 LREIAAERSSVRREAEELQAQLNVAHERLAELRQELQAseesregLQREALGARRALEDEVQEKDVLQHSNTELRASIHR 973
Cdd:TIGR02168  777 LAEAEAEIEELEAQIEQLKEELKALREALDELRAELTL-------LNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  974 AEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQA 1053
Cdd:TIGR02168  850 LSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLEL 929

                          810       820       830       840       850
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1720355914 1054 QVSRdAQHRQKNLQESL--ELQRQVAEAQAAHDGVQKEVLGLRQKLAEVEAS 1103
Cdd:TIGR02168  930 RLEG-LEVRIDNLQERLseEYSLTLEEAEALENKIEDDEEEARRRLKRLENK 980
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 289-850 3.04e-23

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 107.72  E-value: 3.04e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  289 ERRQQREQELR-LRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVHLLEREKEA 367
Cdd:COG1196    220 EELKELEAELLlLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR 299

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  368 LETTMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSRE 447
Cdd:COG1196    300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE 379

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  448 ALSSMQLQRDILETEKESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQLEQERD 527
Cdd:COG1196    380 ELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE 459

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  528 QLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKEtcghlEQKQDHLEKQVVLLGQENAQLREQVGQVtnkkQALE 607
Cdd:COG1196    460 ALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE-----AEADYEGFLEGVKAALLLAGLRGLAGAV----AVLI 530

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  608 KQLAQSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAERNSLENSLFEAQRLTTQLQTQQ 687
Cdd:COG1196    531 GVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLRE 610

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  688 EQLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHREKDTLSL 767
Cdd:COG1196    611 ADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAE 690

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  768 SLAEEKEAAARWMEQQKELLTRSAADRE--ALQGEIQNLKQERDESLLQLEHEMQQALSLKDAEKSLLSKELSGAHRELE 845
Cdd:COG1196    691 EELELEEALLAEEEEERELAEAEEERLEeeLEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELE 770


                   ....*
gi 1720355914  846 RARQE 850
Cdd:COG1196    771 RLERE 775
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 804-1539 6.30e-21

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 100.13  E-value: 6.30e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  804 LKQERDESLLQLEHeMQQALslkdaeksllsKELSGAHRELERARQEAQNQQVQAEatvttmtkELRTLQVQFEEA-IST 882
Cdd:TIGR02168  170 YKERRKETERKLER-TRENL-----------DRLEDILNELERQLKSLERQAEKAE--------RYKELKAELRELeLAL 229

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  883 HQREADTLREKLREIAAERSSVRREAEELQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQH 962
Cdd:TIGR02168  230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRE 309

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  963 SNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQ 1042
Cdd:TIGR02168  310 RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1043 RKRQEVSDLQAQVSR------DAQHRQKNLQESLELQRQVAEAQAAHDgVQKEVLGLRQKLAEVEASGETRAKQLEGHLC 1116
Cdd:TIGR02168  390 QLELQIASLNNEIERlearleRLEDRRERLQQEIEELLKKLEEAELKE-LQAELEELEEELEELQEELERLEEALEELRE 468

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1117 ESQRAEQTLQAELcritRKLQEASNQADSLQRSLDNACSRVHVLEQELAKA-----------------EGARCNAEAQLG 1179
Cdd:TIGR02168  469 ELEEAEQALDAAE----RELAQLQARLDSLERLQENLEGFSEGVKALLKNQsglsgilgvlselisvdEGYEAAIEAALG 544

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1180 -RLWSTLCSGLGQSRNLLASPKRPHS-------PTTGSSQTRPGRQRTSPPTRSYSPARWPSPVPVDPK---------SE 1242
Cdd:TIGR02168  545 gRLQAVVVENLNAAKKAIAFLKQNELgrvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKlrkalsyllGG 624

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1243 VIDVAFVRDALRDLVQ------------------GLLEAQQERDNSGIQvaNLSSQLSEAERERLRLQSRVEQLQRDLAD 1304
Cdd:TIGR02168  625 VLVVDDLDNALELAKKlrpgyrivtldgdlvrpgGVITGGSAKTNSSIL--ERRREIEELEEKIEELEEKIAELEKALAE 702

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1305 AEEGQRRAESALQSAQAaralQKEALQRLETEHLASARAAGQERRRLQEQVDTLRQALEESSRPSQSLADKGRLLEQPLQ 1384
Cdd:TIGR02168  703 LRKELEELEEELEQLRK----ELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELA 778

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1385 QVLPHS-------RRDRAERRALREQTTSLRTERARLQGELAALRTRLIQTEQETLKKEEDRAMLGAKKELLLQSLSHLH 1457
Cdd:TIGR02168  779 EAEAEIeeleaqiEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1458 QEVDGALRQSQQLQAQMAELEQAHTQRLQELAAQ--HQRDLAAEAQRLHEAQLQATQALESCEQIH---QQRVKVLERQV 1532
Cdd:TIGR02168  859 AEIEELEELIEELESELEALLNERASLEEALALLrsELEELSEELRELESKRSELRRELEELREKLaqlELRLEGLEVRI 938


                   ....*..
gi 1720355914 1533 ASLKKRL 1539
Cdd:TIGR02168  939 DNLQERL 945
PTZ00121 PTZ00121
MAEBL; Provisional
 641-1439 1.23e-11

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 70.17  E-value: 1.23e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  641 LLAKQEALERHSELVTKEAADLRAERNSLENSLFEAQRLTTQLQTQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRET 720
Cdd:PTZ00121  1041 VLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEA 1120

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  721 KLQLHLGQLQQQAAQQEQEAQLALERQ-ELAHTEDLARlhREKDTLSLSLAEEKEAAARWMEQQKELLTRSAADREALQg 799
Cdd:PTZ00121  1121 KKKAEDARKAEEARKAEDARKAEEARKaEDAKRVEIAR--KAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAE- 1197

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  800 EIQNLKQERDESLLQLEHEMQQALSLKDAEKSLLSKELSGAHRELERARQEAQNQQVQAEATVTTMTKELRTLQVQFEEA 879
Cdd:PTZ00121  1198 DARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEA 1277

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  880 isthqREADTLR---EKLREIAAERSSVRREAEELQAQLNVAhERLAELRQELQASEESREGLQREAlgarraleDEVQE 956
Cdd:PTZ00121  1278 -----RKADELKkaeEKKKADEAKKAEEKKKADEAKKKAEEA-KKADEAKKKAEEAKKKADAAKKKA--------EEAKK 1343

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  957 KDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRT 1036
Cdd:PTZ00121  1344 AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEA 1423

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1037 LEAENQRKRQEVSDLQAQVSRDAQHRQKNLQE---SLELQRQVAEAQAAHDgvqkevlgLRQKLAEVEASGETRAKQLEG 1113
Cdd:PTZ00121  1424 KKKAEEKKKADEAKKKAEEAKKADEAKKKAEEakkAEEAKKKAEEAKKADE--------AKKKAEEAKKADEAKKKAEEA 1495

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1114 hlceSQRAEQtlqaelcriTRKLQEASNQADSLQRSLDNACSrvhvleQELAKAEGARCNAEAQLGRLWSTLCSGLGQSR 1193
Cdd:PTZ00121  1496 ----KKKADE---------AKKAAEAKKKADEAKKAEEAKKA------DEAKKAEEAKKADEAKKAEEKKKADELKKAEE 1556

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1194 NLLASPKRPHSPTTGSSQTRPGRQRTSPPTRSYSPARWPSPVPVDPKSEVIDVAFVRDA--LRDLVQGLLEAQQERDNSG 1271
Cdd:PTZ00121  1557 LKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAeeAKIKAEELKKAEEEKKKVE 1636

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1272 IQVANLSSQLSEAE---RERLRLQSRVEQLQRdlaDAEEGQRRAESALQSAQAARAlQKEALQRLETEhlasARAAGQER 1348
Cdd:PTZ00121  1637 QLKKKEAEEKKKAEelkKAEEENKIKAAEEAK---KAEEDKKKAEEAKKAEEDEKK-AAEALKKEAEE----AKKAEELK 1708

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1349 RRLQEQV---DTLRQALEESSRPSQSLADKgrllEQPLQQVLPHSRRDRAERRALREQTTSLRTERARLQGELAALRTRL 1425
Cdd:PTZ00121  1709 KKEAEEKkkaEELKKAEEENKIKAEEAKKE----AEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEE 1784

                          810
                   ....*....|....
gi 1720355914 1426 IQTEQETLKKEEDR 1439
Cdd:PTZ00121  1785 LDEEDEKRRMEVDK 1798
PTZ00121 PTZ00121
MAEBL; Provisional
 374-1089 2.64e-11

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 69.01  E-value: 2.64e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  374 ELRAKADIREAETQKLEVTNAELRRSlllRAEQKAELAQQSERSLRELEASQgRVEQLEEKVSGLRKELATSREALSSMQ 453
Cdd:PTZ00121  1080 DFDAKEDNRADEATEEAFGKAEEAKK---TETGKAEEARKAEEAKKKAEDAR-KAEEARKAEDARKAEEARKAEDAKRVE 1155

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  454 LQRDILETEKESLHGALAQAESGNADLELLVTRlKAEGMEQQDSLAKMAAlleglsqdkgtlnhlALQLEQER--DQLRE 531
Cdd:PTZ00121  1156 IARKAEDARKAEEARKAEDAKKAEAARKAEEVR-KAEELRKAEDARKAEA---------------ARKAEEERkaEEARK 1219

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  532 QQKMLQQEQAGMREQLTQTGQQLGliRAER-RSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVTNKKQALEKQL 610
Cdd:PTZ00121  1220 AEDAKKAEAVKKAEEAKKDAEEAK--KAEEeRNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKK 1297

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  611 AQSLQDQEAQMDILQEA-----LHEKNTLSEERAQLLAKQ-EALERHSELVTKEAADLRAERNSLENSLFEAQRLTTQLQ 684
Cdd:PTZ00121  1298 AEEKKKADEAKKKAEEAkkadeAKKKAEEAKKKADAAKKKaEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAK 1377

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  685 TQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHREKDT 764
Cdd:PTZ00121  1378 KKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1457

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  765 LSLSLAEEKEAAARWMEQQKELLTRSAADReaLQGEIQNLKQERDEsLLQLEHEMQQALSLKDAEKSLLSKELSGAhrEL 844
Cdd:PTZ00121  1458 KAEEAKKKAEEAKKADEAKKKAEEAKKADE--AKKKAEEAKKKADE-AKKAAEAKKKADEAKKAEEAKKADEAKKA--EE 1532

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  845 ERARQEAQNQQVQAEATVTTMTKELRTLQ--VQFEEAISTHQREADTLR--EKLREIAAERSSVRREAEELQAQLNVAHE 920
Cdd:PTZ00121  1533 AKKADEAKKAEEKKKADELKKAEELKKAEekKKAEEAKKAEEDKNMALRkaEEAKKAEEARIEEVMKLYEEEKKMKAEEA 1612

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  921 RLAElRQELQASEESREGLQREALGARRALEDEVQEKdvlqhsNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQV 1000
Cdd:PTZ00121  1613 KKAE-EAKIKAEELKKAEEEKKKVEQLKKKEAEEKKK------AEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEE 1685

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1001 AAQKEAYELRTRLQELERAQRDTRRKLQERHR--QVRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNLQESLELQRQVAE 1078
Cdd:PTZ00121  1686 DEKKAAEALKKEAEEAKKAEELKKKEAEEKKKaeELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKE 1765

                          730
                   ....*....|.
gi 1720355914 1079 AQAAHDGVQKE 1089
Cdd:PTZ00121  1766 EEKKAEEIRKE 1776
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 278-1063 9.30e-11

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 67.07  E-value: 9.30e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  278 HPALQAVQAAIERRQQREQELRLRLESSQEeaagLREQLSGY-RQELRTSQRLLQDRAQEHEDL--LGQLEAQRQEAQLS 354
Cdd:pfam15921   70 YPGKEHIERVLEEYSHQVKDLQRRLNESNE----LHEKQKFYlRQSVIDLQTKLQEMQMERDAMadIRRRESQSQEDLRN 145

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  355 QA--SVHLLEREKEALETTMEELRAKADIREAETQKLEVTNAELRrSLLLRAEQKA----------------ELAQQSER 416
Cdd:pfam15921  146 QLqnTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIR-SILVDFEEASgkkiyehdsmstmhfrSLGSAISK 224

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  417 SLRELEAS----QGRVEQLEEKVSGLRKELATSREALssMQLQRDILE-------------TEKESlhGALAQAESGNAD 479
Cdd:pfam15921  225 ILRELDTEisylKGRIFPVEDQLEALKSESQNKIELL--LQQHQDRIEqliseheveitglTEKAS--SARSQANSIQSQ 300

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  480 LELLvtrlkaegmeQQDSLAKMAALLEGLSQDKGTLNHLalqleqeRDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRA 559
Cdd:pfam15921  301 LEII----------QEQARNQNSMYMRQLSDLESTVSQL-------RSELREAKRMYEDKIEELEKQLVLANSELTEART 363

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  560 ERRSLKETCGHLEQKQDHL-------EKQVVLLGQENAQL--------------REQVGQVTNKKQALEKQLAQSLQDQE 618
Cdd:pfam15921  364 ERDQFSQESGNLDDQLQKLladlhkrEKELSLEKEQNKRLwdrdtgnsitidhlRRELDDRNMEVQRLEALLKAMKSECQ 443

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  619 AQMDILQEALHEKNTLSEERAQLLAKqeaLERHSELVTKEAADLRAERNSLENSlfeaqrlttqlQTQQEQLEGKAEAAQ 698
Cdd:pfam15921  444 GQMERQMAAIQGKNESLEKVSSLTAQ---LESTKEMLRKVVEELTAKKMTLESS-----------ERTVSDLTASLQEKE 509

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  699 LARRALQVEIERLKSDWEVretKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHREKDTLSLSLAEEKEAAAR 778
Cdd:pfam15921  510 RAIEATNAEITKLRSRVDL---KLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAG 586

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  779 WMEQQKELLTRSAADREALQGEIQNLKQERDESLLQLEHEMqqalslkdAEKSLLSKELSGAHRELERARQEAQNQQVQA 858
Cdd:pfam15921  587 AMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARV--------SDLELEKVKLVNAGSERLRAVKDIKQERDQL 658

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  859 EATVTTMTKELRTLQVQFEeaisthqreadTLREKLREIAAERSSVrreAEELQAQLNVAHERLAELRQELQASEESREG 938
Cdd:pfam15921  659 LNEVKTSRNELNSLSEDYE-----------VLKRNFRNKSEEMETT---TNKLKMQLKSAQSELEQTRNTLKSMEGSDGH 724

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  939 LQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELER 1018
Cdd:pfam15921  725 AMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKE 804

                          810       820       830       840
                   ....*....|....*....|....*....|....*....|....*
gi 1720355914 1019 AQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQHRQ 1063
Cdd:pfam15921  805 KVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQ 849
MARTX_Nterm NF012221
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ...
 776-1106 1.76e-08

MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.


Pssm-ID: 467957 [Multi-domain]  Cd Length: 1848  Bit Score: 59.85  E-value: 1.76e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  776 AARWMEQQKELLTRSAADREALQG--EIQNLKQERD------ESLLQLEHEMQQALSLKDAEKSLLSKELSGAHREleRA 847
Cdd:NF012221  1497 ASAWQQKTLKLTAKAGSNRLEFKGtgHNDGLGYILDnvvatsESSQQADAVSKHAKQDDAAQNALADKERAEADRQ--RL 1574

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  848 RQEAQNQqvqaeatvttmTKELRTLQVQFEeaiSTHQREADTLREklreiaAERSSVRREAEELQAQLNVAHERLAELRQ 927
Cdd:NF012221  1575 EQEKQQQ-----------LAAISGSQSQLE---STDQNALETNGQ------AQRDAILEESRAVTKELTTLAQGLDALDS 1634

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  928 ELQASEESREGLqREALGARraLEDEVQEK--DVLQHSNTELRAS----IHRAEQEKASLKRSKEEQEQKLLLLQEAQVA 1001
Cdd:NF012221  1635 QATYAGESGDQW-RNPFAGG--LLDRVQEQldDAKKISGKQLADAkqrhVDNQQKVKDAVAKSEAGVAQGEQNQANAEQD 1711

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1002 AQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNlqESLELQRQVAEAQa 1081
Cdd:NF012221  1712 IDDAKADAEKRKDDALAKQNEAQQAESDANAAANDAQSRGEQDASAAENKANQAQADAKGAKQD--ESDKPNRQGAAGS- 1788

                          330       340
                   ....*....|....*....|....*
gi 1720355914 1082 ahdgvqkevlGLRQKLAEVEASGET 1106
Cdd:NF012221  1789 ----------GLSGKAYSVEGVAEP 1803
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 21-472 2.81e-06

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 52.25  E-value: 2.81e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914   21 LSQVNTLLRQQLEHMQKANDTLARELTRATHSLVHLQRKLELQESQRLSLRqpRDILPLWRQAKALQTHLAELRASTERG 100
Cdd:COG1196    328 LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE--EELEELAEELLEALRAAAELAAQLEEL 405

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  101 LTDVQADMTRTAQRLHMACLNLDSHLRLTASsmTSDLEQRLREQAREMLQLQGQWAAEKVALQARLSEQTLLVEKLSVQK 180
Cdd:COG1196    406 EEAEEALLERLERLEEELEELEEALAELEEE--EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELL 483

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  181 EQGERAILTLKSDIQRLKSR----RSGGQLAVDELRDEVESLHHVLASIKEVAQSDAMCPELAWSSSIEVREAQA----- 251
Cdd:COG1196    484 EELAEAAARLLLLLEAEADYegflEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVaaaai 563

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  252 ----RLRSPPRSVSPHQRMSPARTSSPTSLHPALQAVQAAIERRQQREQELRLRLESSQEEAAGLREQLSGYRQELRT-- 325
Cdd:COG1196    564 eylkAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTla 643

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  326 -------------SQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVHLLEREKEALETTMEELRAKADIREAETQKLEVT 392
Cdd:COG1196    644 grlrevtlegeggSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEE 723

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  393 NAELRRSLLLRAEQKAELAQQSERSLRE----------LEASQGRVEQLEEKVSGLRK-------ELATSREALSSMQLQ 455
Cdd:COG1196    724 EALEEQLEAEREELLEELLEEEELLEEEaleelpeppdLEELERELERLEREIEALGPvnllaieEYEELEERYDFLSEQ 803

                          490
                   ....*....|....*..
gi 1720355914  456 RDILETEKESLHGALAQ 472
Cdd:COG1196    804 REDLEEARETLEEAIEE 820
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
 517-1129 4.03e-06

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 51.76  E-value: 4.03e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  517 HLALQLEQERDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKEtcgHLEQKQDHLEKQVVLLGQENAQLREQV 596
Cdd:pfam12128  241 PEFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQ---LLRTLDDQWKEKRDELNGELSAADAAV 317

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  597 GQVTNKKQALEKQLAQSLQDqeaqmDILQEALHEKNtLSEERAQLlakqEALERHSELVTKEAADLRAERNSLENSLfeA 676
Cdd:pfam12128  318 AKDRSELEALEDQHGAFLDA-----DIETAAADQEQ-LPSWQSEL----ENLEERLKALTGKHQDVTAKYNRRRSKI--K 385

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  677 QRLTTQLQTQQEQLEGKAEAAQLARRALQVEIERLKSDWevretklqlhlgqlqqQAAQQEQEAQLALERQELAHTEDLA 756
Cdd:pfam12128  386 EQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESEL----------------REQLEAGKLEFNEEEYRLKSRLGEL 449

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  757 RLHREKDTLSLSLAEEKEAAARWMEQQKELLTRSAADREALQGEIQNLKQERDESLLQLEHEMQQALSLKDAEKSLLSKE 836
Cdd:pfam12128  450 KLRLNQATATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQL 529

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  837 LSGAHRELERARQEAQNQQvQAEATVTTMTKELRTLQVQFEEAISTHQREA------DTLREKLREIAAERSSVRREAEE 910
Cdd:pfam12128  530 FPQAGTLLHFLRKEAPDWE-QSIGKVISPELLHRTDLDPEVWDGSVGGELNlygvklDLKRIDVPEWAASEEELRERLDK 608

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  911 LQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEdevQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQ-- 988
Cdd:pfam12128  609 AEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALK---NARLDLRRLFDEKQSEKDKKNKALAERKDSANERln 685

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  989 ----EQKLLL--LQEAQVAAQKEAYELRTRLQEL---------------------ERAQRDTRRKL--QERHRQVRTLEA 1039
Cdd:pfam12128  686 sleaQLKQLDkkHQAWLEEQKEQKREARTEKQAYwqvvegaldaqlallkaaiaaRRSGAKAELKAleTWYKRDLASLGV 765

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1040 ENQ---RKRQEVSDLQAQVSRDAQHRQKNL------QESLELQRQVAEAQAAHdgVQKEVLGLRQKLAEVEASGETRAKQ 1110
Cdd:pfam12128  766 DPDviaKLKREIRTLERKIERIAVRRQEVLryfdwyQETWLQRRPRLATQLSN--IERAISELQQQLARLIADTKLRRAK 843

                          650
                   ....*....|....*....
gi 1720355914 1111 LEGHLCESQRAEQTLQAEL 1129
Cdd:pfam12128  844 LEMERKASEKQQVRLSENL 862
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 74-452 4.30e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 51.60  E-value: 4.30e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914   74 RDILPLWRQAKALQTHLAELRASTERGLTDVQADMTRTAQrlhmacLNLDSHLRLTASSMTSDLEQRLREQAREMLQLQG 153
Cdd:TIGR02168  677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQ------LRKELEELSRQISALRKDLARLEAEVEQLEERIA 750

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  154 QWAAEKVALQARLSEQTLLVEKLSVQKEQGERAILTLKSDIQRLKSRRSGGQLAVDELRDEVESLHhvlasikevaqsda 233
Cdd:TIGR02168  751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLN-------------- 816

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  234 mcpelawsssIEVREAQARLRSPPRSVSPHQRMSPARTSSPTSLHPALQAVQAAIERRQQREQELRLRLESSQEEaaglR 313
Cdd:TIGR02168  817 ----------EEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNE----R 882

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  314 EQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVHLLE-----REKEALETTMEELRAKADIREAETQK 388
Cdd:TIGR02168  883 ASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLeglevRIDNLQERLSEEYSLTLEEAEALENK 962

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720355914  389 LEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREALSSM 452
Cdd:TIGR02168  963 IEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEI 1026
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1336-1538 8.34e-06

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 50.68  E-value: 8.34e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1336 EHLASARAAGQERRRLQEQVDTLRQALEESSRPSQSLADKGRLleQPLQQVLPHsRRDRAERRALREQTTSLRTERARLQ 1415
Cdd:COG4913    232 EHFDDLERAHEALEDAREQIELLEPIRELAERYAAARERLAEL--EYLRAALRL-WFAQRRLELLEAELEELRAELARLE 308

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1416 GELAALRTRLIQTEQETLKKEEDRAML-GAKKELLLQSLSHLHQEVDGALRQSQQLQAQMAELEQ---AHTQRLQELAAQ 1491
Cdd:COG4913    309 AELERLEARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEALLAALGLplpASAEEFAALRAE 388

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*..
gi 1720355914 1492 HQRDLAAEAQRLHEAQLQATQALEScEQIHQQRVKVLERQVASLKKR 1538
Cdd:COG4913    389 AAALLEALEEELEALEEALAEAEAA-LRDLRRELRELEAEIASLERR 434
Rootletin pfam15035
Ciliary rootlet component, centrosome cohesion;
18-112 4.39e-05

Ciliary rootlet component, centrosome cohesion;


Pssm-ID: 464459 [Multi-domain]  Cd Length: 190  Bit Score: 46.19  E-value: 4.39e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914   18 SMGLSQVNTLLRQQLEHMQKANDTLARELTRATHSLVHLQRKLELQESQ----------RLSLRQPRdILPLWRQAKALQ 87
Cdd:pfam15035   87 SESLSQVNSLLREQLEQASRANEALREDLQKLTNDWERAREELEQKESEwrkeeeafneYLSSEHSR-LLSLWREVVAVR 165

                           90       100
                   ....*....|....*....|....*
gi 1720355914   88 THLAELRASTERGLTDVQADMTRTA 112
Cdd:pfam15035  166 RQFTELKTATERDLSELKTEFSRTS 190
 
Name Accession Description Interval E-value
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 820-1421 1.19e-25

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 115.42  E-value: 1.19e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  820 QQALSLKDAEKSLLSKELSGAHRELERARQEAQNQQVQAEATVTTMTKELRTLQVQFEEAISTHQReadtLREKLREIAA 899
Cdd:COG1196    213 ERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEE----LELELEEAQA 288

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  900 ERSSVRREAEELQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKA 979
Cdd:COG1196    289 EEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  980 SLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDA 1059
Cdd:COG1196    369 EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1060 QHRQKNLQESLELQRQVAEAQAAHDGVQKEVLGLRQKLAEVEASGETRAKQLEGHLCESQRAeqtlqaelcritrKLQEA 1139
Cdd:COG1196    449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGV-------------KAALL 515

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1140 SNQADSLQRSLDNACSRVHVLEQELAKAEGARCNAEAQLGRLWSTLCSGLGQSRNLLASPKRPHSPTTGSSqtrpgrqrt 1219
Cdd:COG1196    516 LAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARA--------- 586

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1220 spptrsySPARWPSPVPVDPKSEVIDVAFVRDALRDLVQGLLEAQQERDNSGIQVANLSSQLSEAERERLRLQSRVEQLQ 1299
Cdd:COG1196    587 -------ALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAG 659

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1300 RDLAdaEEGQRRAESALQSAQAARALQKEALQRLETEHLASARAAGQERRRLQEQVDTLRQALEESSRPSQSLADKGRLL 1379
Cdd:COG1196    660 GSLT--GGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREEL 737

                          570       580       590       600
                   ....*....|....*....|....*....|....*....|..
gi 1720355914 1380 EQPLQQVLPHSRRDRAERRALREQTTSLRTERARLQGELAAL 1421
Cdd:COG1196    738 LEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 286-1103 9.29e-24

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 109.38  E-value: 9.29e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  286 AAIERRQQREQELRLRLESSQEEAaglrEQLSGYRQELRTSQRLLQDRAQEHEDLLgQLEAQRQEAQLSqASVHLLEREK 365
Cdd:TIGR02168  165 AGISKYKERRKETERKLERTRENL----DRLEDILNELERQLKSLERQAEKAERYK-ELKAELRELELA-LLVLRLEELR 238

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  366 EALETTMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSER---SLRELEASQGRVEQLEEKVSGLRKEL 442
Cdd:TIGR02168  239 EELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKElyaLANEISRLEQQKQILRERLANLERQL 318

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  443 ATSREALSSMQLQRDILETEKESLHGALAQAEsgnADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQL 522
Cdd:TIGR02168  319 EELEAQLEELESKLDELAEELAELEEKLEELK---EELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI 395

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  523 EQERDQLREQQKMLQQeQAGMREQLTQTGQQLG--LIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVT 600
Cdd:TIGR02168  396 ASLNNEIERLEARLER-LEDRRERLQQEIEELLkkLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAE 474

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  601 NKKQALEKQLAQSlqdqEAQMDILQEALHEKNTLSEERAQLLAKQEALERH----SELVTKEA-------ADLRAERNSL 669
Cdd:TIGR02168  475 QALDAAERELAQL----QARLDSLERLQENLEGFSEGVKALLKNQSGLSGIlgvlSELISVDEgyeaaieAALGGRLQAV 550

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  670 ----------------ENSLFEAQRLTTQLQTQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQA 733
Cdd:TIGR02168  551 vvenlnaakkaiaflkQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDD 630

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  734 AQQEQEAQLALERQELAHTEDLARLHREkdtlSLSLAEEKEAAARWMEQQKELLtRSAADREALQGEIQNLKQERDESLL 813
Cdd:TIGR02168  631 LDNALELAKKLRPGYRIVTLDGDLVRPG----GVITGGSAKTNSSILERRREIE-ELEEKIEELEEKIAELEKALAELRK 705

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  814 QLEhEMQQALSLKDAEKSLLSKELSGAHRELERARQEAQnqqvQAEATVTTMTKELRTLQVQFEEAisthQREADTLREK 893
Cdd:TIGR02168  706 ELE-ELEEELEQLRKELEELSRQISALRKDLARLEAEVE----QLEERIAQLSKELTELEAEIEEL----EERLEEAEEE 776

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  894 LREIAAERSSVRREAEELQAQLNVAHERLAELRQELQAseesregLQREALGARRALEDEVQEKDVLQHSNTELRASIHR 973
Cdd:TIGR02168  777 LAEAEAEIEELEAQIEQLKEELKALREALDELRAELTL-------LNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  974 AEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQA 1053
Cdd:TIGR02168  850 LSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLEL 929

                          810       820       830       840       850
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1720355914 1054 QVSRdAQHRQKNLQESL--ELQRQVAEAQAAHDGVQKEVLGLRQKLAEVEAS 1103
Cdd:TIGR02168  930 RLEG-LEVRIDNLQERLseEYSLTLEEAEALENKIEDDEEEARRRLKRLENK 980
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 307-1138 2.03e-23

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 108.61  E-value: 2.03e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  307 EEAAGLreqlSGYRQELRTSQRLLqDRAQEH----EDLLGQLEAQrqeaqlsqasVHLLEREKEALEttmEELRAKADIR 382
Cdd:TIGR02168  162 EEAAGI----SKYKERRKETERKL-ERTRENldrlEDILNELERQ----------LKSLERQAEKAE---RYKELKAELR 223

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  383 EAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREALSSMQLQRDILETE 462
Cdd:TIGR02168  224 ELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQ 303

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  463 KESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQLEQERDQLREQQKMLQQEQAG 542
Cdd:TIGR02168  304 KQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLET 383

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  543 MREQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQE--NAQLREQVGQVTNKKQALEKqLAQSLQDQEAQ 620
Cdd:TIGR02168  384 LRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKleEAELKELQAELEELEEELEE-LQEELERLEEA 462

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  621 MDILQEALHEKNT----LSEERAQLLAKQEALERHSELVTKEAADLRAERNslENSLFEAQRLTTQLQTQQEQLEGKAEA 696
Cdd:TIGR02168  463 LEELREELEEAEQaldaAERELAQLQARLDSLERLQENLEGFSEGVKALLK--NQSGLSGILGVLSELISVDEGYEAAIE 540

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  697 AQLARRALQVEIERLKSDWE----VRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHREKDTL------- 765
Cdd:TIGR02168  541 AALGGRLQAVVVENLNAAKKaiafLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKlrkalsy 620

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  766 -------------SLSLAEEKEAAARWMEQQKELLTRSaadrealqGEIQNLKQERDESLLQLEHEmqqalsLKDAEKSL 832
Cdd:TIGR02168  621 llggvlvvddldnALELAKKLRPGYRIVTLDGDLVRPG--------GVITGGSAKTNSSILERRRE------IEELEEKI 686

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  833 lsKELSGAHRELERARQEAQNQQVQAEATVTTMTKELRTLQVQFEEAisthQREADTLREKLREIAAERSSVRREAEELQ 912
Cdd:TIGR02168  687 --EELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISAL----RKDLARLEAEVEQLEERIAQLSKELTELE 760

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  913 AQLNVAHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKL 992
Cdd:TIGR02168  761 AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL 840

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  993 LLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNLQESLEL 1072
Cdd:TIGR02168  841 EDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEEL 920

                          810       820       830       840       850       860
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720355914 1073 QRQVAEAQAAHDGVQKEVLGLRQKLAEveaSGETRAKQLEGHLCESQRAEQTLQAELCRITRKLQE 1138
Cdd:TIGR02168  921 REKLAQLELRLEGLEVRIDNLQERLSE---EYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 289-850 3.04e-23

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 107.72  E-value: 3.04e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  289 ERRQQREQELR-LRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVHLLEREKEA 367
Cdd:COG1196    220 EELKELEAELLlLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR 299

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  368 LETTMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSRE 447
Cdd:COG1196    300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE 379

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  448 ALSSMQLQRDILETEKESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQLEQERD 527
Cdd:COG1196    380 ELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE 459

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  528 QLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKEtcghlEQKQDHLEKQVVLLGQENAQLREQVGQVtnkkQALE 607
Cdd:COG1196    460 ALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE-----AEADYEGFLEGVKAALLLAGLRGLAGAV----AVLI 530

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  608 KQLAQSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAERNSLENSLFEAQRLTTQLQTQQ 687
Cdd:COG1196    531 GVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLRE 610

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  688 EQLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHREKDTLSL 767
Cdd:COG1196    611 ADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAE 690

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  768 SLAEEKEAAARWMEQQKELLTRSAADRE--ALQGEIQNLKQERDESLLQLEHEMQQALSLKDAEKSLLSKELSGAHRELE 845
Cdd:COG1196    691 EELELEEALLAEEEEERELAEAEEERLEeeLEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELE 770


                   ....*
gi 1720355914  846 RARQE 850
Cdd:COG1196    771 RLERE 775
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 415-1029 1.96e-22

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 105.02  E-value: 1.96e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  415 ERSLRELEASQGRVEQLEEKVSGLRKELAT----SREALSSMQLQRDILETEKESLHGALAQAESGNADLELLVTRLKAE 490
Cdd:COG1196    175 EEAERKLEATEENLERLEDILGELERQLEPlerqAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAE 254

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  491 GMEQQDSLAKMAALLEGLSQDKGTLNHLALQLEQERDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKETCGH 570
Cdd:COG1196    255 LEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEE 334

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  571 LEQKQDHLEKQVVLLGQENAQLREQVGQVTNKKQALEKQLAQSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQEALER 650
Cdd:COG1196    335 LEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLE 414

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  651 HSELVTKEAADLRAERNSLENSLFEAQRLTTQLQTQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQ 730
Cdd:COG1196    415 RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL 494

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  731 QQAAQQEQEAQLALERQELAHTEDLARLHREKDTLSLSLAEEKEAAARWMEQQkeLLTRSAADREALQGEIQNLKQERDE 810
Cdd:COG1196    495 LLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAA--LQNIVVEDDEVAAAAIEYLKAAKAG 572

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  811 SLLQLEHEMQQALSLKDAEKSLLSKELSGAHRELERARQEAQNQQVQAEATVTTMTkelrtlqvqfEEAISTHQREADTL 890
Cdd:COG1196    573 RATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLV----------AARLEAALRRAVTL 642

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  891 REKLREIAAERSSVRREAEELQAQlnvAHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRAS 970
Cdd:COG1196    643 AGRLREVTLEGEGGSAGGSLTGGS---RRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEE 719

                          570       580       590       600       610
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1720355914  971 IHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQE 1029
Cdd:COG1196    720 ELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 528-1099 2.86e-21

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 101.17  E-value: 2.86e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  528 QLREQQKMLQQEQAGMREQLTQtgQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVTNKKQALE 607
Cdd:COG1196    217 ELKEELKELEAELLLLKLRELE--AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELL 294

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  608 KQLAQSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAERNSLENSLFEAQRLTTQLQTQQ 687
Cdd:COG1196    295 AELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  688 EQLEGKAEAAQLARRALQVEIERLKSdwevrETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHREKDTLSL 767
Cdd:COG1196    375 AEAEEELEELAEELLEALRAAAELAA-----QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE 449

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  768 SLAEEKEAAARWMEQQKELLTRSAADREALQGEIQNLKQERDESLLQLEHEMQQALSLKDAEKSLLSKELSGAHRELERA 847
Cdd:COG1196    450 EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVL 529

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  848 RQEAQNQQVQAEATVTTMTKELRTLQVQFEEAISTHQREADTLREKLREIAAERSSVRREAEELQAQLNVAHERLAELRQ 927
Cdd:COG1196    530 IGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLR 609

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  928 ELQASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAY 1007
Cdd:COG1196    610 EADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLA 689

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1008 ELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVsrdAQHRQKNLQESLELQRQVAEAQAAHDGVQ 1087
Cdd:COG1196    690 EEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREEL---LEELLEEEELLEEEALEELPEPPDLEELE 766

                          570
                   ....*....|..
gi 1720355914 1088 KEVLGLRQKLAE 1099
Cdd:COG1196    767 RELERLEREIEA 778
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 888-1535 3.91e-21

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 100.78  E-value: 3.91e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  888 DTLREKLREIAAERSSVRREAEELQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQHSNTEL 967
Cdd:COG1196    235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  968 RASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQE 1047
Cdd:COG1196    315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA 394

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1048 VSDLQAQVSRDAQHRQKNLQESLELQRQVAEAQAAHDGVQKEVLGLRQKLAEVEASGEtrakqleghlcESQRAEQTLQA 1127
Cdd:COG1196    395 AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA-----------ELEEEEEALLE 463

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1128 ELCRITRKLQEASNQADSLQRSLDNACSRVHVLEQELAKAEGarcnaeaqlgrlwstlcsglgqsrnllaspkrphsptt 1207
Cdd:COG1196    464 LLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEG-------------------------------------- 505

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1208 gssqtrpgrqrtspptrsysparwpspvpvdpksevidvafvrdalrdLVQGLLEAQQERDNSGIQVANLSSQLSEAERE 1287
Cdd:COG1196    506 ------------------------------------------------FLEGVKAALLLAGLRGLAGAVAVLIGVEAAYE 537

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1288 RLRLQSRVEQLQRDLADAEEGQRRAESALQSAQAARAlqkeALQRLETEHLASARAAGQERRRLQEQVDTLRQALEESSR 1367
Cdd:COG1196    538 AALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRA----TFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADA 613

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1368 PSQSLADkgRLLEQPLQQVLPHSRRDRAERRALREQTTSLRTERARLQGELAALRTRLIQTEQETLKKEEDRAMLGAKKE 1447
Cdd:COG1196    614 RYYVLGD--TLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEE 691

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1448 LLLQSLSHLHQEVDGALRQSQQLQAQMAELEQAHTQRLQELAAQHQRDLAAEAQRLHEAQLQATQALESCEQIHQQRVKV 1527
Cdd:COG1196    692 ELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELER 771


                   ....*...
gi 1720355914 1528 LERQVASL 1535
Cdd:COG1196    772 LEREIEAL 779
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 804-1539 6.30e-21

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 100.13  E-value: 6.30e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  804 LKQERDESLLQLEHeMQQALslkdaeksllsKELSGAHRELERARQEAQNQQVQAEatvttmtkELRTLQVQFEEA-IST 882
Cdd:TIGR02168  170 YKERRKETERKLER-TRENL-----------DRLEDILNELERQLKSLERQAEKAE--------RYKELKAELRELeLAL 229

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  883 HQREADTLREKLREIAAERSSVRREAEELQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQH 962
Cdd:TIGR02168  230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRE 309

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  963 SNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQ 1042
Cdd:TIGR02168  310 RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1043 RKRQEVSDLQAQVSR------DAQHRQKNLQESLELQRQVAEAQAAHDgVQKEVLGLRQKLAEVEASGETRAKQLEGHLC 1116
Cdd:TIGR02168  390 QLELQIASLNNEIERlearleRLEDRRERLQQEIEELLKKLEEAELKE-LQAELEELEEELEELQEELERLEEALEELRE 468

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1117 ESQRAEQTLQAELcritRKLQEASNQADSLQRSLDNACSRVHVLEQELAKA-----------------EGARCNAEAQLG 1179
Cdd:TIGR02168  469 ELEEAEQALDAAE----RELAQLQARLDSLERLQENLEGFSEGVKALLKNQsglsgilgvlselisvdEGYEAAIEAALG 544

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1180 -RLWSTLCSGLGQSRNLLASPKRPHS-------PTTGSSQTRPGRQRTSPPTRSYSPARWPSPVPVDPK---------SE 1242
Cdd:TIGR02168  545 gRLQAVVVENLNAAKKAIAFLKQNELgrvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKlrkalsyllGG 624

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1243 VIDVAFVRDALRDLVQ------------------GLLEAQQERDNSGIQvaNLSSQLSEAERERLRLQSRVEQLQRDLAD 1304
Cdd:TIGR02168  625 VLVVDDLDNALELAKKlrpgyrivtldgdlvrpgGVITGGSAKTNSSIL--ERRREIEELEEKIEELEEKIAELEKALAE 702

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1305 AEEGQRRAESALQSAQAaralQKEALQRLETEHLASARAAGQERRRLQEQVDTLRQALEESSRPSQSLADKGRLLEQPLQ 1384
Cdd:TIGR02168  703 LRKELEELEEELEQLRK----ELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELA 778

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1385 QVLPHS-------RRDRAERRALREQTTSLRTERARLQGELAALRTRLIQTEQETLKKEEDRAMLGAKKELLLQSLSHLH 1457
Cdd:TIGR02168  779 EAEAEIeeleaqiEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1458 QEVDGALRQSQQLQAQMAELEQAHTQRLQELAAQ--HQRDLAAEAQRLHEAQLQATQALESCEQIH---QQRVKVLERQV 1532
Cdd:TIGR02168  859 AEIEELEELIEELESELEALLNERASLEEALALLrsELEELSEELRELESKRSELRRELEELREKLaqlELRLEGLEVRI 938


                   ....*..
gi 1720355914 1533 ASLKKRL 1539
Cdd:TIGR02168  939 DNLQERL 945
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 768-1364 8.27e-21

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 99.63  E-value: 8.27e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  768 SLAEEKEAAARWMEQQKELLTRSA----ADREALQGEIQNLKQERDESLLQLEHEmQQALSLKDAEKSLLSKELSGAHRE 843
Cdd:COG1196    204 PLERQAEKAERYRELKEELKELEAelllLKLRELEAELEELEAELEELEAELEEL-EAELAELEAELEELRLELEELELE 282

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  844 LERARQEAQNQQVQAEATVTTMTKELRTLQvQFEEAISTHQREADTLREKLREIAAERSSVRREAEELQAQLNVAHERLA 923
Cdd:COG1196    283 LEEAQAEEYELLAELARLEQDIARLEERRR-ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELA 361

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  924 ELRQELQASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQ 1003
Cdd:COG1196    362 EAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE 441

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1004 KEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNLQESLELQRQVAEAQAAH 1083
Cdd:COG1196    442 EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG 521

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1084 DGVQKEVLGLRQKLAEVEASGETRAKQLEGHLCESQRAEQTLQAELCRITRKLQEASNQADSLQRSLDNACSRVHVLEQE 1163
Cdd:COG1196    522 LAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAV 601

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1164 LAKAEGARCNAEAQLGRLWSTLCSGLGQSRNLLASPKRPHSPTTGSSQTRPGRQRTSPPTRSysparwpspvpvdpksev 1243
Cdd:COG1196    602 DLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLT------------------ 663

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1244 idvafvRDALRDLVQGLLEAQQERDNSGIQVANLSSQLSEAERERLRLQSRVEQLQRDLADAEEGQRRAESALQSAQAAR 1323
Cdd:COG1196    664 ------GGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREEL 737

                          570       580       590       600
                   ....*....|....*....|....*....|....*....|.
gi 1720355914 1324 ALQKEALQRLETEHLASARAAGQERRRLQEQVDTLRQALEE 1364
Cdd:COG1196    738 LEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 892-1506 1.82e-20

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 98.47  E-value: 1.82e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  892 EKLREIAAERSsvRREAEELQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRASI 971
Cdd:COG1196    213 ERYRELKEELK--ELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE 290

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  972 HRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDL 1051
Cdd:COG1196    291 YELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA 370

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1052 QAQVSRDAQHRQKNLQESLELQRQVAEAQAAHDGVQKEVLGLRQKLAEVEASGETRAKQLEghlcESQRAEQTLQAELCR 1131
Cdd:COG1196    371 EAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALA----ELEEEEEEEEEALEE 446

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1132 ITRKLQEASNQADSLQRSLDNACSRVHVLEQELAKAEGARCNAEAQLgrlwstlcsglgqsrNLLASPKRPHSPTTGSSQ 1211
Cdd:COG1196    447 AAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARL---------------LLLLEAEADYEGFLEGVK 511

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1212 TRPGRQRTSPPTRSYSPARWPSPVPVDPKSEVIDVAFVRDALRDLVQGLLEAQQERDNSGIQVANLSSQLSEAERERLRL 1291
Cdd:COG1196    512 AALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAA 591

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1292 QSRVEQLQRDLADAEEGQRRAESALQSAQAARALQKEALQRLETEHLASARAAGQERRRLQEQVDTLRQALEESSRPSQS 1371
Cdd:COG1196    592 LARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELL 671

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1372 LADKGRLLEQPLQQVLPHSRRDRAERRALREQTTSLRTERARLQGELAALRTRLIQTEQETLKKEEDRAMLGAKKELLLQ 1451
Cdd:COG1196    672 AALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEE 751

                          570       580       590       600       610       620
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720355914 1452 SLSHLHQEVD--GALRQSQQLQAQMAELE----------QAHTQRLQELAAQHQrDLAAEAQRLHEA 1506
Cdd:COG1196    752 ALEELPEPPDleELERELERLEREIEALGpvnllaieeyEELEERYDFLSEQRE-DLEEARETLEEA 817
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 378-981 1.92e-20

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 98.47  E-value: 1.92e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  378 KADIREAEtQKLEVTNAELRRSLLLRAE---QKAELAQQSERSLRELEASQgRVEQLEEKVSGLRKELATSREALSSMQL 454
Cdd:COG1196    171 KERKEEAE-RKLEATEENLERLEDILGElerQLEPLERQAEKAERYRELKE-ELKELEAELLLLKLRELEAELEELEAEL 248

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  455 QRdiLETEKESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQLEQERDQLREQQK 534
Cdd:COG1196    249 EE--LEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELA 326

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  535 MLQQEQAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVTNKKQALEKQLAQSL 614
Cdd:COG1196    327 ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELE 406

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  615 QDQEAQMDILQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAERNSLENSLFEAQRLTTQLQTQQEQLEGKA 694
Cdd:COG1196    407 EAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  695 EAAQlARRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHREKDTLSLSLAEEKE 774
Cdd:COG1196    487 AEAA-ARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEY 565

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  775 AAARWMEQQKELLTRSAADREALQGEIQNLKQERD----ESLLQLEHEMQQALSLKDAEKSLLSKELSGAH---RELERA 847
Cdd:COG1196    566 LKAAKAGRATFLPLDKIRARAALAAALARGAIGAAvdlvASDLREADARYYVLGDTLLGRTLVAARLEAALrraVTLAGR 645

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  848 RQEAQNQQVQAEATVTTMTKELRTLQVQFEEAISTHQREADTLREKLREIAAERSSVRREAEELQAQLNVAHERLAELRQ 927
Cdd:COG1196    646 LREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEA 725

                          570       580       590       600       610
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1720355914  928 ELQASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASL 981
Cdd:COG1196    726 LEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 521-1185 5.38e-20

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 97.43  E-value: 5.38e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  521 QLEQERDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVT 600
Cdd:TIGR02168  236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLE 315

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  601 NKKQALEKQLAQSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAERNSLENSLFEAQRLT 680
Cdd:TIGR02168  316 RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI 395

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  681 TQLQTQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHR 760
Cdd:TIGR02168  396 ASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQ 475

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  761 EKDTLSLSLAEEKEAAARWMEQQKELLTRSAADREALQGEIQ-NLKQERDESLLQLEHEMQQALSL-------------- 825
Cdd:TIGR02168  476 ALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGlSGILGVLSELISVDEGYEAAIEAalggrlqavvvenl 555

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  826 ---KDAEKSLLSKELSGAH-----RELERARQEAQNQQVQAEATVTTMTKELRTLQVQFEEAIST---HQREADTLREKL 894
Cdd:TIGR02168  556 naaKKAIAFLKQNELGRVTflpldSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYllgGVLVVDDLDNAL 635

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  895 R------------------------------EIAAERSSVRREAEELQAQLNVAHERLAELRQELQASEESREGLQREAL 944
Cdd:TIGR02168  636 ElakklrpgyrivtldgdlvrpggvitggsaKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELE 715

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  945 GARRALEDEVQekdvlQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEayELRTRLQELERAQRDTR 1024
Cdd:TIGR02168  716 QLRKELEELSR-----QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLE--EAEEELAEAEAEIEELE 788

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1025 RKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNLQESLELQRQVAEAQAAHDGVQKEVLGLRQKLAEVEASG 1104
Cdd:TIGR02168  789 AQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELI 868

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1105 ETRAKQLEGHLCESQRAEQ---TLQAELCRITRKLQEASNQADSLQRSLDNACSRVHVLEQELAKAEGARCNAEAQLGRL 1181
Cdd:TIGR02168  869 EELESELEALLNERASLEEalaLLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEE 948


                   ....
gi 1720355914 1182 WSTL 1185
Cdd:TIGR02168  949 YSLT 952
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 752-1480 2.16e-19

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 95.12  E-value: 2.16e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  752 TEDLARLHREKDTLSLSL-AEEKEAAARWMEQQKELLTRSAADREALQGEIQNL----------KQERDESLLQLEHEMQ 820
Cdd:TIGR02168  212 AERYKELKAELRELELALlVLRLEELREELEELQEELKEAEEELEELTAELQELeekleelrleVSELEEEIEELQKELY 291

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  821 ---QALSLKDAEKSLLSKELSGAHRELERA---RQEAQNQQVQAEATVTTMTKELRTLQVQFE---EAISTHQREADTLR 891
Cdd:TIGR02168  292 alaNEISRLEQQKQILRERLANLERQLEELeaqLEELESKLDELAEELAELEEKLEELKEELEsleAELEELEAELEELE 371

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  892 EKLREIAAERSSVRREAEELQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEDevQEKDVLQHSNTELRASI 971
Cdd:TIGR02168  372 SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE--AELKELQAELEELEEEL 449

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  972 HRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRdtrrKLQERHRQVRTLEAENQRKRQEVSDL 1051
Cdd:TIGR02168  450 EELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQE----NLEGFSEGVKALLKNQSGLSGILGVL 525

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1052 QAQVSRDAQ-----------HRQKNLQESLELQRQVAEAQAAHDGVQKEVLGLRQ-KLAEVEASGETRAKQLEGHLC--- 1116
Cdd:TIGR02168  526 SELISVDEGyeaaieaalggRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSiKGTEIQGNDREILKNIEGFLGvak 605

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1117 ----ESQRAEQTLQAEL--CRITRKLQEASNQADSLQRSLDNAC------SRVHVLEQELAKAEGARCNAEAQLGRLWST 1184
Cdd:TIGR02168  606 dlvkFDPKLRKALSYLLggVLVVDDLDNALELAKKLRPGYRIVTldgdlvRPGGVITGGSAKTNSSILERRREIEELEEK 685

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1185 LCSGLGQSRNLLASPKR-PHSPTTGSSQTRPGRQRTSPPTRSYSPARwpspvpVDPKSEVIDVAFVRDALRDLVQGLLEA 1263
Cdd:TIGR02168  686 IEELEEKIAELEKALAElRKELEELEEELEQLRKELEELSRQISALR------KDLARLEAEVEQLEERIAQLSKELTEL 759

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1264 QQERDNSGIQVANLSSQLSEAERERLRLQSRVEQLQRDLADAEEGQRRAESALQSAQAARALQKEALQRLETEHLASARA 1343
Cdd:TIGR02168  760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERR 839

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1344 AG---QERRRLQEQVDTLRQALEESSRPSQSLADKGRLLEQPLQQVLPHSRRDRAERRALREQTTSLRTERARLQGELAA 1420
Cdd:TIGR02168  840 LEdleEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEE 919

                          730       740       750       760       770       780
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720355914 1421 LRTRL--IQTEQETLKKEEDRaMLGAKKELLLQSLSHLHQEVDGALRQSQQLQAQMAELEQA 1480
Cdd:TIGR02168  920 LREKLaqLELRLEGLEVRIDN-LQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENK 980
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 280-810 5.06e-19

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 93.85  E-value: 5.06e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  280 ALQAVQAAIERRQQREQELRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVH 359
Cdd:COG1196    261 ELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELE 340

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  360 LLEREKEALETTMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLR 439
Cdd:COG1196    341 ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLE 420

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  440 KELATSREALSSMQLQRDILETEKESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQdkgtlNHLA 519
Cdd:COG1196    421 EELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAA-----RLLL 495

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  520 LQLEQERDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQkQDHLEKQVVLLGQENAQLREQVGQV 599
Cdd:COG1196    496 LLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQ-NIVVEDDEVAAAAIEYLKAAKAGRA 574

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  600 TNKKQALEKQLAQSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAERNSLENSLFEAQRL 679
Cdd:COG1196    575 TFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGE 654

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  680 TTQLQTQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLH 759
Cdd:COG1196    655 GGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAER 734

                          490       500       510       520       530
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1720355914  760 REKDTLSLSLAEEKEAAArwmeqqkELLTRSAADREALQGEIQNLKQERDE 810
Cdd:COG1196    735 EELLEELLEEEELLEEEA-------LEELPEPPDLEELERELERLEREIEA 778
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 387-1150 6.17e-19

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 93.97  E-value: 6.17e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  387 QKLEVTNAELRRSLLlRAEQKAELAQQSERSLRELEASQGRVEQLEEKVsgLRKELATSREALSSMQLQRDILETEKESL 466
Cdd:TIGR02168  189 DRLEDILNELERQLK-SLERQAEKAERYKELKAELRELELALLVLRLEE--LREELEELQEELKEAEEELEELTAELQEL 265

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  467 HGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQLEQERDQLREQQKMLQQEQAGMREQ 546
Cdd:TIGR02168  266 EEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEK 345

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  547 LTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVTNKKQALEKQLaqslQDQEAQMDILQE 626
Cdd:TIGR02168  346 LEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARL----ERLEDRRERLQQ 421

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  627 alhekNTLSEERAQLLAKQEALERHSELVTKEAADLRAERNSLENSLFEAQRLTTQLQTQQEQLEGKAEAAQLARRALQV 706
Cdd:TIGR02168  422 -----EIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER 496

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  707 EIERLKSdwEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLArlhrekDTLSLSLAEEKEAAARWMEQQKEL 786
Cdd:TIGR02168  497 LQENLEG--FSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALG------GRLQAVVVENLNAAKKAIAFLKQN 568

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  787 LTRSAADREALQGEIQNLKQERDESLLQLEHEMQQALSLKDAEKSL---LSKELSGAHreLERARQEAQNQQVQAEATVT 863
Cdd:TIGR02168  569 ELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLrkaLSYLLGGVL--VVDDLDNALELAKKLRPGYR 646

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  864 TMTKELRTL---------QVQFEEAISTHQREADTLREKLREIAAERSSVRREAEELQAQLNVAHERLAELRQELQASEE 934
Cdd:TIGR02168  647 IVTLDGDLVrpggvitggSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR 726

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  935 SREGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQ 1014
Cdd:TIGR02168  727 QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALD 806

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1015 ELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNLQESLELQRQVAEAQAAHDGVQKEVLGLR 1094
Cdd:TIGR02168  807 ELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLE 886

                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1720355914 1095 QKLAEVEASGETRAKQL---EGHLCESQRAEQTLQAELCRITRKLQEASNQADSLQRSL 1150
Cdd:TIGR02168  887 EALALLRSELEELSEELrelESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 290-1071 1.81e-18

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 92.43  E-value: 1.81e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  290 RRQQREQELRLRLESSQEEAAGLReqLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVHLLEREKEALE 369
Cdd:TIGR02168  210 EKAERYKELKAELRELELALLVLR--LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQ 287

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  370 TTMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREAL 449
Cdd:TIGR02168  288 KELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL 367

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  450 SSMQLQRDILETEKESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQleQERDQL 529
Cdd:TIGR02168  368 EELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQ--AELEEL 445

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  530 REQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQvvllgQENAQlreqvgqvtnKKQALEKQ 609
Cdd:TIGR02168  446 EEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERL-----QENLE----------GFSEGVKA 510

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  610 LAQSLQDQEAQMDILQEALHEKNTLseERAQLLAKQEALErhsELVTKEAADLRAERNSL-ENSLFEAQRLTTQLQTQQE 688
Cdd:TIGR02168  511 LLKNQSGLSGILGVLSELISVDEGY--EAAIEAALGGRLQ---AVVVENLNAAKKAIAFLkQNELGRVTFLPLDSIKGTE 585

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  689 QLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTED---------LARLH 759
Cdd:TIGR02168  586 IQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDgdlvrpggvITGGS 665

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  760 REKDTLSLSLAEEKEAAARWMEQQKELLTRSAADREALQGEIQNLKQERdESLLQLEHEMQQALSLKDAEKSLLSKELSG 839
Cdd:TIGR02168  666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEEL-EQLRKELEELSRQISALRKDLARLEAEVEQ 744

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  840 AHRELERARQEAQNQQVQAEAT------VTTMTKELRTLQVQFEEAISTHQREADTLREKLREIAAERSSVRREAEELQA 913
Cdd:TIGR02168  745 LEERIAQLSKELTELEAEIEELeerleeAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE 824

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  914 QLNVAHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLL 993
Cdd:TIGR02168  825 RLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELR 904

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  994 LLQEAQVAAQKEAYELRT-------RLQELERaqrdTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQvsrDAQHRQKNL 1066
Cdd:TIGR02168  905 ELESKRSELRRELEELREklaqlelRLEGLEV----RIDNLQERLSEEYSLTLEEAEALENKIEDDEE---EARRRLKRL 977


                   ....*
gi 1720355914 1067 QESLE 1071
Cdd:TIGR02168  978 ENKIK 982
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 920-1550 4.50e-15

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 81.14  E-value: 4.50e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  920 ERLAELRQELqasEESREGLQREALGARR--ALEDEVQEKDVlqhsnTELRASIHRAEQEKASLKRSKEEQEQKLLLLQE 997
Cdd:COG1196    189 ERLEDILGEL---ERQLEPLERQAEKAERyrELKEELKELEA-----ELLLLKLRELEAELEELEAELEELEAELEELEA 260

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  998 AQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNLQESLELQRQVA 1077
Cdd:COG1196    261 ELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELE 340

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1078 EAQAAHDGVQKEVLGLRQKLAEVEASGETRAKQLEghlcESQRAEQTLQAELCRITRKLQEASNQADSLQRSLDNACSRV 1157
Cdd:COG1196    341 ELEEELEEAEEELEEAEAELAEAEEALLEAEAELA----EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERL 416

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1158 HVLEQELAKAEGARCNAEAQLGRLwstlcsglgqsrnllaspkrphspttgssqtrpgrqrtspptrsysparwpspvpv 1237
Cdd:COG1196    417 ERLEEELEELEEALAELEEEEEEE-------------------------------------------------------- 440

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1238 dpKSEVIDVAFVRDALRDLVQGLLEAQQERDNSGIQVANLSSQLSEAERERLRLQSRVEQLQRDLADAEEGQRRAESALQ 1317
Cdd:COG1196    441 --EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG 518

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1318 SAQAARALQKEALQRLETEHLASARAAGQERRRLQEQVDTLRQALEESSRpsqslADKGRLLEQPLQQVLPHSRRDRAER 1397
Cdd:COG1196    519 LRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKA-----AKAGRATFLPLDKIRARAALAAALA 593

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1398 RALREQttsLRTERARLQGELAALRTRLIQTEQETLKKEEDRAMLGAKKELLLQSLSHLHQEVDGALRQSQQLQAQMAEL 1477
Cdd:COG1196    594 RGAIGA---AVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRREL 670

                          570       580       590       600       610       620       630
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720355914 1478 EQAHTQRLQELAAQHQRDLAAEAQRLHEAQLQATQALESCEQIHQQRVKVLERQVASLKKRLDKEVWQRQQQA 1550
Cdd:COG1196    671 LAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLE 743
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 363-1056 2.92e-14

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 78.57  E-value: 2.92e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  363 REKEALETTMEELRAKADIREAETQKLEVTNAELRRSLLLRAE-----------QKAELAQQSERSLRELEASQGRVEQL 431
Cdd:TIGR02169  177 EELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEkreyegyellkEKEALERQKEAIERQLASLEEELEKL 256

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  432 EEKVSGLRKELATSREALSsmQLQRDILETEKESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQD 511
Cdd:TIGR02169  257 TEEISELEKRLEEIEQLLE--ELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKL 334

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  512 KGTLNHLALQLEQ---ERDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQE 588
Cdd:TIGR02169  335 LAEIEELEREIEEerkRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEE 414

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  589 NAQLREQVGQVTNKKQALEKQLAQSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAERNS 668
Cdd:TIGR02169  415 LQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAE 494

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  669 LENSLFEAQRLTTQLQTQQEQLEGKAEA-----AQL----ARRALQVEIE---RLKS----DWEV--------RETKLQL 724
Cdd:TIGR02169  495 AEAQARASEERVRGGRAVEEVLKASIQGvhgtvAQLgsvgERYATAIEVAagnRLNNvvveDDAVakeaiellKRRKAGR 574

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  725 HLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHRE---------KDTLslsLAEEKEAAARWMEQQK------ELLTR 789
Cdd:TIGR02169  575 ATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKyepafkyvfGDTL---VVEDIEAARRLMGKYRmvtlegELFEK 651

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  790 SAA-------------DREALQGEIQNLkQERDESLLQLEHEMQQALSLKDAEKSLLSKELSGAHRELERARQEAQnQQV 856
Cdd:TIGR02169  652 SGAmtggsraprggilFSRSEPAELQRL-RERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIE-QLE 729

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  857 QAEATVTTMTKELRTLQVQFEEAISTHQREADTLREKLREIAAERSSVRREAEELQAQLnvAHERLAELRQELQASEESR 936
Cdd:TIGR02169  730 QEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARL--SHSRIPEIQAELSKLEEEV 807

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  937 EGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQEL 1016
Cdd:TIGR02169  808 SRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDL 887

                          730       740       750       760
                   ....*....|....*....|....*....|....*....|
gi 1720355914 1017 ERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVS 1056
Cdd:TIGR02169  888 KKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLE 927
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 693-1181 3.69e-14

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 78.05  E-value: 3.69e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  693 KAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQqqaaQQEQEAQLALERQELAhTEDLARLHREKDTLSLSLAEE 772
Cdd:COG1196    226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELA----ELEAELEELRLELEEL-ELELEEAQAEEYELLAELARL 300

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  773 KEAAARWMEQQKEL---LTRSAADREALQGEIQNLKQERDESLLQLEHEMQQALSLKDAEKSLLSKELsgAHRELERARQ 849
Cdd:COG1196    301 EQDIARLEERRRELeerLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL--EAEAELAEAE 378

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  850 EAQNQQVQAEATVTTMTKELRTLQVQFEEAISTHQREADTLREKLREIAAERSSVRREAEELQAQLNVAHERLAELRQEL 929
Cdd:COG1196    379 EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  930 QASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYEL 1009
Cdd:COG1196    459 EALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEA 538

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1010 RTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSR---DAQHRQKNLQESLELQRQVAEAQAAHDGV 1086
Cdd:COG1196    539 ALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAalaAALARGAIGAAVDLVASDLREADARYYVL 618

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1087 QKEVLGlRQKLAEVEASGETRAKQLEGHLCESQRAEQTLQAELCRITRKLQEASNQADSLQRSLDNACSRVHVLEQELAK 1166
Cdd:COG1196    619 GDTLLG-RTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEE 697

                          490
                   ....*....|....*
gi 1720355914 1167 AEGARCNAEAQLGRL 1181
Cdd:COG1196    698 ALLAEEEEERELAEA 712
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 771-1530 1.28e-13

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 76.26  E-value: 1.28e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  771 EEKEAAARWMEQQKELLTRSAADREALQGEIQNLKQERDESL----LQLEHEmQQALSLKDAEKSLLSKELSGAHRELER 846
Cdd:TIGR02169  170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAEryqaLLKEKR-EYEGYELLKEKEALERQKEAIERQLAS 248

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  847 ARQEAQNQQVQAEATVTTMTKELRTLQVQFEEAISTHQREADTLREKLREIAAERSSVRREAEELQAQLNVAHERLAELR 926
Cdd:TIGR02169  249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLE 328

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  927 QELQASEESREGLQREaLGARRALEDEVQEKdvLQHSNTELRASIHRAEQEKASLKRSKEEQEQklllLQEAQVAAQKEA 1006
Cdd:TIGR02169  329 AEIDKLLAEIEELERE-IEEERKRRDKLTEE--YAELKEELEDLRAELEEVDKEFAETRDELKD----YREKLEKLKREI 401

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1007 YELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNLQESLELQRQVAEAQAAHDGV 1086
Cdd:TIGR02169  402 NELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRV 481

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1087 QKEVLGLRQKLAEVEAsgetRAKQLEGHLCESQRAEQTLQ----------AELCRITRKLQEAsnqadsLQRSLDNACSR 1156
Cdd:TIGR02169  482 EKELSKLQRELAEAEA----QARASEERVRGGRAVEEVLKasiqgvhgtvAQLGSVGERYATA------IEVAAGNRLNN 551

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1157 VhVLEQELAKAEGARCNAEAQLGRLWSTLCSGLGQSRNLLASPKRP------------------------------HSPT 1206
Cdd:TIGR02169  552 V-VVEDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDgvigfavdlvefdpkyepafkyvfgdtlvvEDIE 630

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1207 TGSSQTRPGRQRT------SPPTRSYSPARWPSPVPVDPKSEVIDVAFVRDALRDLVQGLLEAQQERDNSGIQVANLSSQ 1280
Cdd:TIGR02169  631 AARRLMGKYRMVTlegelfEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQE 710

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1281 LSEAERERLRLQSRVEQLQRDLADAEEGQRRAESALQSAQAARALQKEALQRLETEHLASARAAGQ--------ERRRLQ 1352
Cdd:TIGR02169  711 LSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKleealndlEARLSH 790

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1353 EQVDTLRQALEESSRPSQSLADKGRLLEQPLQQVLPHSRRDRAERRALREQTTSLRTERARLQGELAALRTRLIQTEQET 1432
Cdd:TIGR02169  791 SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL 870

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1433 LKKEEDRAMLGAKKELLLQSLSHLHQEVDGALRQSQQLQAQMAELEQAHTQRLQELAAQHQRdlAAEAQRLHEAQLQATQ 1512
Cdd:TIGR02169  871 EELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEE--LSEIEDPKGEDEEIPE 948

                          810
                   ....*....|....*...
gi 1720355914 1513 ALESCEQIHQQRVKVLER 1530
Cdd:TIGR02169  949 EELSLEDVQAELQRVEEE 966
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 139-916 7.06e-13

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 73.94  E-value: 7.06e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  139 QRLREQAREMLQLQGQWAAEKVALQARLSEQTLLVEKLSVQKEQGERAILTLKSDIQRLKSRrsggqlavdelrdevesl 218
Cdd:TIGR02168  242 EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQ------------------ 303

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  219 hhvlasikevaqsdamcpelawsssieVREAQARLRspprsvsphqrmspartssptSLHPALQAVQAAIERRQQREQEL 298
Cdd:TIGR02168  304 ---------------------------KQILRERLA---------------------NLERQLEELEAQLEELESKLDEL 335

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  299 RLRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVHLLEREKEALETTMEEL--- 375
Cdd:TIGR02168  336 AEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLedr 415

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  376 --RAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREALSSMQ 453
Cdd:TIGR02168  416 reRLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLE 495

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  454 LQRDILETEKESLHGALAQAESGNADLELLVTRLKAegmEQQDSLAKMAALLEGLSQ-------------------DKGT 514
Cdd:TIGR02168  496 RLQENLEGFSEGVKALLKNQSGLSGILGVLSELISV---DEGYEAAIEAALGGRLQAvvvenlnaakkaiaflkqnELGR 572

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  515 LNHLALQLEQERDQLREQQKMLQQEQAGMR--------------------------EQLTQTGQQLGLIRAERR------ 562
Cdd:TIGR02168  573 VTFLPLDSIKGTEIQGNDREILKNIEGFLGvakdlvkfdpklrkalsyllggvlvvDDLDNALELAKKLRPGYRivtldg 652

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  563 SLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVTNKKQALEKQLAQSLQDQEAQMDILQEALHEKNTLSEERAQLL 642
Cdd:TIGR02168  653 DLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALR 732

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  643 AKQEALERHSELVTKEAADLRAERNSLENSlfEAQRLTTQLQTQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRETKL 722
Cdd:TIGR02168  733 KDLARLEAEVEQLEERIAQLSKELTELEAE--IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRA 810

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  723 QLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHREkdtlslsLAEEKEAAARWMEQQKELLTRSAADREALQGEIQ 802
Cdd:TIGR02168  811 ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE-------LSEDIESLAAEIEELEELIEELESELEALLNERA 883

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  803 NLKQERDESLLQLEHEMQQAlslkdaeksllsKELSGAHRELERARQEAQNQQVQAEATVTTMTKELRTLQVQFEEAist 882
Cdd:TIGR02168  884 SLEEALALLRSELEELSEEL------------RELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEE--- 948

                          810       820       830
                   ....*....|....*....|....*....|....
gi 1720355914  883 HQREADTLREKLREIAAERSSVRREAEELQAQLN 916
Cdd:TIGR02168  949 YSLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 602-1535 9.72e-12

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 70.09  E-value: 9.72e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  602 KKQALEKQLAQSLQDQEAQMDILQEALHEKNTLSE--ERAQ-LLAKQEALERHS-ELVTKEAADLRAERNSLENSLFEAQ 677
Cdd:TIGR02168  173 RRKETERKLERTRENLDRLEDILNELERQLKSLERqaEKAErYKELKAELRELElALLVLRLEELREELEELQEELKEAE 252

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  678 RLTTQLQTQQEQLEGKAEAAQLARRALQVEIERLKSDWEvretklqlhlgqlqqqaaqQEQEAQLALERQELAHTEDLAR 757
Cdd:TIGR02168  253 EELEELTAELQELEEKLEELRLEVSELEEEIEELQKELY-------------------ALANEISRLEQQKQILRERLAN 313

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  758 LHREKDTLSLSLAEEkeaaarwmEQQKELLTRSAADREALQGEIQNlkqerdesllqlEHEMQQAlslkdaeksllskel 837
Cdd:TIGR02168  314 LERQLEELEAQLEEL--------ESKLDELAEELAELEEKLEELKE------------ELESLEA--------------- 358

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  838 sgahrELERARQEAQNqqvqaeatvttmtkelrtlqvqfeeaisthqreadtLREKLREIAAERSSVRREAEELQAQLNV 917
Cdd:TIGR02168  359 -----ELEELEAELEE------------------------------------LESRLEELEEQLETLRSKVAQLELQIAS 397

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  918 AHERLAELRQELQASEESREGLQREALGARRALEDevQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQE 997
Cdd:TIGR02168  398 LNNEIERLEARLERLEDRRERLQQEIEELLKKLEE--AELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQ 475

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  998 AQVAAQKEAYELRTRLQELERAQrdtrRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQ-----------HRQKNL 1066
Cdd:TIGR02168  476 ALDAAERELAQLQARLDSLERLQ----ENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGyeaaieaalggRLQAVV 551

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1067 QESLELQRQVAEAQAAHDGVQKEVLGLRQ-KLAEVEASGETRAKQLEGHLCESQRAEQTlqaelcritrklqeasnqADS 1145
Cdd:TIGR02168  552 VENLNAAKKAIAFLKQNELGRVTFLPLDSiKGTEIQGNDREILKNIEGFLGVAKDLVKF------------------DPK 613

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1146 LQRSLDNACSRVHVLE-----QELAKAEGARCNAEAQLGRLWSTLCSGLGQSRnllaspKRPHSPTTGSSQTRPGRQRTS 1220
Cdd:TIGR02168  614 LRKALSYLLGGVLVVDdldnaLELAKKLRPGYRIVTLDGDLVRPGGVITGGSA------KTNSSILERRREIEELEEKIE 687

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1221 PPTRSYSPARwpspvpvdpksevIDVAFVRDALRDLVQGLLEAQQERDNSGIQVANLSSQLSEAERERLRLQSRVEQLQR 1300
Cdd:TIGR02168  688 ELEEKIAELE-------------KALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSK 754

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1301 DLADAEEGQRRAESALQSAQAARALQKEALQRLETEHLASARAAGQERRRLQEqvdtLRQALEESSRPSQSLADKGRLLE 1380
Cdd:TIGR02168  755 ELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDE----LRAELTLLNEEAANLRERLESLE 830

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1381 QPLQQVLPHSRRDRAERRALREQTTSLRTERARLQGELAALRTRLIQTEQETLKKEEDRAMLGAKKELLLQSLSHLHQEV 1460
Cdd:TIGR02168  831 RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR 910

                          890       900       910       920       930       940       950
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720355914 1461 DGALRQSQQLQAQMAELeQAHTQRLQELAAQHQRDLAAEAQRLHEAQLQATQALESCEQIHQQRVKVLERQVASL 1535
Cdd:TIGR02168  911 SELRRELEELREKLAQL-ELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
PTZ00121 PTZ00121
MAEBL; Provisional
 641-1439 1.23e-11

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 70.17  E-value: 1.23e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  641 LLAKQEALERHSELVTKEAADLRAERNSLENSLFEAQRLTTQLQTQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRET 720
Cdd:PTZ00121  1041 VLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEA 1120

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  721 KLQLHLGQLQQQAAQQEQEAQLALERQ-ELAHTEDLARlhREKDTLSLSLAEEKEAAARWMEQQKELLTRSAADREALQg 799
Cdd:PTZ00121  1121 KKKAEDARKAEEARKAEDARKAEEARKaEDAKRVEIAR--KAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAE- 1197

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  800 EIQNLKQERDESLLQLEHEMQQALSLKDAEKSLLSKELSGAHRELERARQEAQNQQVQAEATVTTMTKELRTLQVQFEEA 879
Cdd:PTZ00121  1198 DARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEA 1277

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  880 isthqREADTLR---EKLREIAAERSSVRREAEELQAQLNVAhERLAELRQELQASEESREGLQREAlgarraleDEVQE 956
Cdd:PTZ00121  1278 -----RKADELKkaeEKKKADEAKKAEEKKKADEAKKKAEEA-KKADEAKKKAEEAKKKADAAKKKA--------EEAKK 1343

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  957 KDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRT 1036
Cdd:PTZ00121  1344 AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEA 1423

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1037 LEAENQRKRQEVSDLQAQVSRDAQHRQKNLQE---SLELQRQVAEAQAAHDgvqkevlgLRQKLAEVEASGETRAKQLEG 1113
Cdd:PTZ00121  1424 KKKAEEKKKADEAKKKAEEAKKADEAKKKAEEakkAEEAKKKAEEAKKADE--------AKKKAEEAKKADEAKKKAEEA 1495

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1114 hlceSQRAEQtlqaelcriTRKLQEASNQADSLQRSLDNACSrvhvleQELAKAEGARCNAEAQLGRLWSTLCSGLGQSR 1193
Cdd:PTZ00121  1496 ----KKKADE---------AKKAAEAKKKADEAKKAEEAKKA------DEAKKAEEAKKADEAKKAEEKKKADELKKAEE 1556

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1194 NLLASPKRPHSPTTGSSQTRPGRQRTSPPTRSYSPARWPSPVPVDPKSEVIDVAFVRDA--LRDLVQGLLEAQQERDNSG 1271
Cdd:PTZ00121  1557 LKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAeeAKIKAEELKKAEEEKKKVE 1636

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1272 IQVANLSSQLSEAE---RERLRLQSRVEQLQRdlaDAEEGQRRAESALQSAQAARAlQKEALQRLETEhlasARAAGQER 1348
Cdd:PTZ00121  1637 QLKKKEAEEKKKAEelkKAEEENKIKAAEEAK---KAEEDKKKAEEAKKAEEDEKK-AAEALKKEAEE----AKKAEELK 1708

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1349 RRLQEQV---DTLRQALEESSRPSQSLADKgrllEQPLQQVLPHSRRDRAERRALREQTTSLRTERARLQGELAALRTRL 1425
Cdd:PTZ00121  1709 KKEAEEKkkaEELKKAEEENKIKAEEAKKE----AEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEE 1784

                          810
                   ....*....|....
gi 1720355914 1426 IQTEQETLKKEEDR 1439
Cdd:PTZ00121  1785 LDEEDEKRRMEVDK 1798
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 139-853 1.52e-11

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 69.70  E-value: 1.52e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  139 QRLREQAREMLQLQGQ-WAAEKVALQARLSEQTLLVEKLSVQKEQGERAILTLKSDIQRLKSRRSGGQLAVDELRDEVES 217
Cdd:TIGR02168  213 ERYKELKAELRELELAlLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA 292

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  218 LHHVLASIKEvaqsdamcpelawsssiEVREAQARLRSpprsvsphqrmspartssptsLHPALQAVQAAIERRQQREQE 297
Cdd:TIGR02168  293 LANEISRLEQ-----------------QKQILRERLAN---------------------LERQLEELEAQLEELESKLDE 334

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  298 LRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVHLLEREKEALETTMEEL-- 375
Cdd:TIGR02168  335 LAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLed 414

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  376 ---RAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREALSSM 452
Cdd:TIGR02168  415 rreRLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL 494

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  453 QLQRDILETEKESLHGALAQAESGNADLELLVTRLKAEgmeQQDSLAKMAALLEGLSQ-------------------DKG 513
Cdd:TIGR02168  495 ERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVD---EGYEAAIEAALGGRLQAvvvenlnaakkaiaflkqnELG 571

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  514 TLNHLALQLEQER--------------------------------------------DQLREQQKMLQQEQAGMR----- 544
Cdd:TIGR02168  572 RVTFLPLDSIKGTeiqgndreilkniegflgvakdlvkfdpklrkalsyllggvlvvDDLDNALELAKKLRPGYRivtld 651

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  545 -EQLTQTG------------------------QQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQV 599
Cdd:TIGR02168  652 gDLVRPGGvitggsaktnssilerrreieeleEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISAL 731

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  600 TNKKQALEKQLAQSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAERNSLENSLFEAQRL 679
Cdd:TIGR02168  732 RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE 811

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  680 TTQLQTQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQEL--AHTEDLAR 757
Cdd:TIGR02168  812 LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNEraSLEEALAL 891

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  758 LHREKDTLSLSLAE---EKEAAARWMEQQKELLTRSAADREALQGEIQNLkQERDESLLQLEHEMQQALSLKDAEkslls 834
Cdd:TIGR02168  892 LRSELEELSEELRElesKRSELRRELEELREKLAQLELRLEGLEVRIDNL-QERLSEEYSLTLEEAEALENKIED----- 965

                          810
                   ....*....|....*....
gi 1720355914  835 kELSGAHRELERARQEAQN 853
Cdd:TIGR02168  966 -DEEEARRRLKRLENKIKE 983
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 137-650 2.63e-11

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 68.81  E-value: 2.63e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  137 LEQRLREQAREMLQLQGQWA---AEKVALQARLSEQTLLVEKLSVQKEQGERAILTLKSDIQRLKSRRSGGQLAVDELRD 213
Cdd:COG1196    272 LRLELEELELELEEAQAEEYellAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEE 351

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  214 EVESLHHVLASIKEVAQSDAmcpelawSSSIEVREAQARLRSpprsvsphQRMSPARTSSptSLHPALQAVQAAIERRQQ 293
Cdd:COG1196    352 ELEEAEAELAEAEEALLEAE-------AELAEAEEELEELAE--------ELLEALRAAA--ELAAQLEELEEAEEALLE 414

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  294 REQELRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVHLLERE---KEALET 370
Cdd:COG1196    415 RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEElaeAAARLL 494

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  371 TMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREALS 450
Cdd:COG1196    495 LLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRA 574

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  451 SMQLQRDILETEKESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQLEQERDQLR 530
Cdd:COG1196    575 TFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGE 654

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  531 EQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVTNKKQALEKQL 610
Cdd:COG1196    655 GGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAER 734

                          490       500       510       520
                   ....*....|....*....|....*....|....*....|
gi 1720355914  611 AQSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQEALER 650
Cdd:COG1196    735 EELLEELLEEEELLEEEALEELPEPPDLEELERELERLER 774
PTZ00121 PTZ00121
MAEBL; Provisional
 374-1089 2.64e-11

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 69.01  E-value: 2.64e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  374 ELRAKADIREAETQKLEVTNAELRRSlllRAEQKAELAQQSERSLRELEASQgRVEQLEEKVSGLRKELATSREALSSMQ 453
Cdd:PTZ00121  1080 DFDAKEDNRADEATEEAFGKAEEAKK---TETGKAEEARKAEEAKKKAEDAR-KAEEARKAEDARKAEEARKAEDAKRVE 1155

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  454 LQRDILETEKESLHGALAQAESGNADLELLVTRlKAEGMEQQDSLAKMAAlleglsqdkgtlnhlALQLEQER--DQLRE 531
Cdd:PTZ00121  1156 IARKAEDARKAEEARKAEDAKKAEAARKAEEVR-KAEELRKAEDARKAEA---------------ARKAEEERkaEEARK 1219

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  532 QQKMLQQEQAGMREQLTQTGQQLGliRAER-RSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVTNKKQALEKQL 610
Cdd:PTZ00121  1220 AEDAKKAEAVKKAEEAKKDAEEAK--KAEEeRNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKK 1297

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  611 AQSLQDQEAQMDILQEA-----LHEKNTLSEERAQLLAKQ-EALERHSELVTKEAADLRAERNSLENSLFEAQRLTTQLQ 684
Cdd:PTZ00121  1298 AEEKKKADEAKKKAEEAkkadeAKKKAEEAKKKADAAKKKaEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAK 1377

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  685 TQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHREKDT 764
Cdd:PTZ00121  1378 KKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1457

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  765 LSLSLAEEKEAAARWMEQQKELLTRSAADReaLQGEIQNLKQERDEsLLQLEHEMQQALSLKDAEKSLLSKELSGAhrEL 844
Cdd:PTZ00121  1458 KAEEAKKKAEEAKKADEAKKKAEEAKKADE--AKKKAEEAKKKADE-AKKAAEAKKKADEAKKAEEAKKADEAKKA--EE 1532

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  845 ERARQEAQNQQVQAEATVTTMTKELRTLQ--VQFEEAISTHQREADTLR--EKLREIAAERSSVRREAEELQAQLNVAHE 920
Cdd:PTZ00121  1533 AKKADEAKKAEEKKKADELKKAEELKKAEekKKAEEAKKAEEDKNMALRkaEEAKKAEEARIEEVMKLYEEEKKMKAEEA 1612

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  921 RLAElRQELQASEESREGLQREALGARRALEDEVQEKdvlqhsNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQV 1000
Cdd:PTZ00121  1613 KKAE-EAKIKAEELKKAEEEKKKVEQLKKKEAEEKKK------AEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEE 1685

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1001 AAQKEAYELRTRLQELERAQRDTRRKLQERHR--QVRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNLQESLELQRQVAE 1078
Cdd:PTZ00121  1686 DEKKAAEALKKEAEEAKKAEELKKKEAEEKKKaeELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKE 1765

                          730
                   ....*....|.
gi 1720355914 1079 AQAAHDGVQKE 1089
Cdd:PTZ00121  1766 EEKKAEEIRKE 1776
PTZ00121 PTZ00121
MAEBL; Provisional
 288-1088 3.92e-11

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 68.24  E-value: 3.92e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  288 IERRQQREQELRLRLESSQEEAAGLREQLSgyrQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVHLLEREKEA 367
Cdd:PTZ00121  1060 AEAKAHVGQDEGLKPSYKDFDFDAKEDNRA---DEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKA 1136

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  368 lettmEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASqgRVEQLEEKVSGLRKELATSRE 447
Cdd:PTZ00121  1137 -----EDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVR--KAEELRKAEDARKAEAARKAE 1209

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  448 ALSSMQLQRdilETEKESLHGALAQAESGNADLEllvTRLKAEGMEQQDSLAKmaalLEGLSQDKGTLNHLALQLEQER- 526
Cdd:PTZ00121  1210 EERKAEEAR---KAEDAKKAEAVKKAEEAKKDAE---EAKKAEEERNNEEIRK----FEEARMAHFARRQAAIKAEEARk 1279

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  527 -DQLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRS--LKETCGHLEQKQDHLEKQvvllgqenAQLREQVGQVTNKK 603
Cdd:PTZ00121  1280 aDELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAdeAKKKAEEAKKKADAAKKK--------AEEAKKAAEAAKAE 1351

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  604 QALEKQLAQSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRaeRNSLENSLFEAQRLTTQL 683
Cdd:PTZ00121  1352 AEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELK--KAAAAKKKADEAKKKAEE 1429

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  684 QTQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHREkd 763
Cdd:PTZ00121  1430 KKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAE-- 1507

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  764 tlslslAEEKEAAARWMEQQKELLTRSAADREALQGEIQNLKQERDESLLQLEHEMQQALSLKDAEKSLLSKE-LSGAHR 842
Cdd:PTZ00121  1508 ------AKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEdKNMALR 1581

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  843 ELERARQ--EAQNQQVQAEATVTTMTKELRTLQVQFEEAISTHQREADTLREKLREIAAERSSVRREAEELqaqlnvahe 920
Cdd:PTZ00121  1582 KAEEAKKaeEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEEL--------- 1652

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  921 RLAELRQELQASEESR--EGLQREALGARRALEDEVQEKDVLQHSNTELRasihRAEQekasLKRSKEEQEQKLLLLQEA 998
Cdd:PTZ00121  1653 KKAEEENKIKAAEEAKkaEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAK----KAEE----LKKKEAEEKKKAEELKKA 1724

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  999 QVAAQKEAYELRtRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDaQHRQKNLQESLELQRQVAE 1078
Cdd:PTZ00121  1725 EEENKIKAEEAK-KEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE-ELDEEDEKRRMEVDKKIKD 1802

                          810
                   ....*....|
gi 1720355914 1079 AQAAHDGVQK 1088
Cdd:PTZ00121  1803 IFDNFANIIE 1812
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 296-1048 4.11e-11

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 68.17  E-value: 4.11e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  296 QELRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLS-QASVHLLEREKEALETTMEE 374
Cdd:TIGR02169  240 EAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGElEAEIASLERSIAEKERELED 319

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  375 LRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREALS---- 450
Cdd:TIGR02169  320 AEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEklkr 399

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  451 ---SMQLQRDILETEKESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQLEQERD 527
Cdd:TIGR02169  400 einELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD 479

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  528 QLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKE-------TCGHL----EQKQDHLE-------KQVVLLGQEN 589
Cdd:TIGR02169  480 RVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKAsiqgvhgTVAQLgsvgERYATAIEvaagnrlNNVVVEDDAV 559

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  590 AQL------REQVGQVT----NKKQALEKQLAQSLQDQ----------------------------------------EA 619
Cdd:TIGR02169  560 AKEaiellkRRKAGRATflplNKMRDERRDLSILSEDGvigfavdlvefdpkyepafkyvfgdtlvvedieaarrlmgKY 639

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  620 QMDILQEALHEKN-----------TLSEERAQLLAKQEALERHSELVTKEAADLRAERNSLENSLFEAQRLTTQLQTQQE 688
Cdd:TIGR02169  640 RMVTLEGELFEKSgamtggsraprGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIG 719

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  689 QLEGKAEAAQLARRALQVEIERLKSDWEVREtklqlhlgqlqqqaaqqeqeaqlalerqelahtEDLARLHREKDTLSLS 768
Cdd:TIGR02169  720 EIEKEIEQLEQEEEKLKERLEELEEDLSSLE---------------------------------QEIENVKSELKELEAR 766

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  769 LAEEKEAAARWMEQQKELLTRSAADR-EALQGEIQNLKQERDESLLQLEhEMQQALSLKDAEKSLLSKELsgahRELERA 847
Cdd:TIGR02169  767 IEELEEDLHKLEEALNDLEARLSHSRiPEIQAELSKLEEEVSRIEARLR-EIEQKLNRLTLEKEYLEKEI----QELQEQ 841

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  848 RQEAQNQQVQAEATVTTMTKELRTLQVQFEEaisthqreadtLREKLREIAAERSSVRREAEELQAQLNVAHERlaelRQ 927
Cdd:TIGR02169  842 RIDLKEQIKSIEKEIENLNGKKEELEEELEE-----------LEAALRDLESRLGDLKKERDELEAQLRELERK----IE 906

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  928 ELQASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQekasLKRSKEEQEQKLLLLQEAQVAAQKEAY 1007
Cdd:TIGR02169  907 ELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLED----VQAELQRVEEEIRALEPVNMLAIQEYE 982

                          810       820       830       840
                   ....*....|....*....|....*....|....*....|.
gi 1720355914 1008 ELRTRLQELEraqrDTRRKLQERHRQVRTLEAENQRKRQEV 1048
Cdd:TIGR02169  983 EVLKRLDELK----EKRAKLEEERKAILERIEEYEKKKREV 1019
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 278-1063 9.30e-11

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 67.07  E-value: 9.30e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  278 HPALQAVQAAIERRQQREQELRLRLESSQEeaagLREQLSGY-RQELRTSQRLLQDRAQEHEDL--LGQLEAQRQEAQLS 354
Cdd:pfam15921   70 YPGKEHIERVLEEYSHQVKDLQRRLNESNE----LHEKQKFYlRQSVIDLQTKLQEMQMERDAMadIRRRESQSQEDLRN 145

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  355 QA--SVHLLEREKEALETTMEELRAKADIREAETQKLEVTNAELRrSLLLRAEQKA----------------ELAQQSER 416
Cdd:pfam15921  146 QLqnTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIR-SILVDFEEASgkkiyehdsmstmhfrSLGSAISK 224

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  417 SLRELEAS----QGRVEQLEEKVSGLRKELATSREALssMQLQRDILE-------------TEKESlhGALAQAESGNAD 479
Cdd:pfam15921  225 ILRELDTEisylKGRIFPVEDQLEALKSESQNKIELL--LQQHQDRIEqliseheveitglTEKAS--SARSQANSIQSQ 300

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  480 LELLvtrlkaegmeQQDSLAKMAALLEGLSQDKGTLNHLalqleqeRDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRA 559
Cdd:pfam15921  301 LEII----------QEQARNQNSMYMRQLSDLESTVSQL-------RSELREAKRMYEDKIEELEKQLVLANSELTEART 363

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  560 ERRSLKETCGHLEQKQDHL-------EKQVVLLGQENAQL--------------REQVGQVTNKKQALEKQLAQSLQDQE 618
Cdd:pfam15921  364 ERDQFSQESGNLDDQLQKLladlhkrEKELSLEKEQNKRLwdrdtgnsitidhlRRELDDRNMEVQRLEALLKAMKSECQ 443

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  619 AQMDILQEALHEKNTLSEERAQLLAKqeaLERHSELVTKEAADLRAERNSLENSlfeaqrlttqlQTQQEQLEGKAEAAQ 698
Cdd:pfam15921  444 GQMERQMAAIQGKNESLEKVSSLTAQ---LESTKEMLRKVVEELTAKKMTLESS-----------ERTVSDLTASLQEKE 509

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  699 LARRALQVEIERLKSDWEVretKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHREKDTLSLSLAEEKEAAAR 778
Cdd:pfam15921  510 RAIEATNAEITKLRSRVDL---KLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAG 586

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  779 WMEQQKELLTRSAADREALQGEIQNLKQERDESLLQLEHEMqqalslkdAEKSLLSKELSGAHRELERARQEAQNQQVQA 858
Cdd:pfam15921  587 AMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARV--------SDLELEKVKLVNAGSERLRAVKDIKQERDQL 658

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  859 EATVTTMTKELRTLQVQFEeaisthqreadTLREKLREIAAERSSVrreAEELQAQLNVAHERLAELRQELQASEESREG 938
Cdd:pfam15921  659 LNEVKTSRNELNSLSEDYE-----------VLKRNFRNKSEEMETT---TNKLKMQLKSAQSELEQTRNTLKSMEGSDGH 724

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  939 LQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELER 1018
Cdd:pfam15921  725 AMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKE 804

                          810       820       830       840
                   ....*....|....*....|....*....|....*....|....*
gi 1720355914 1019 AQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQHRQ 1063
Cdd:pfam15921  805 KVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQ 849
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 397-1138 3.87e-10

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 65.09  E-value: 3.87e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  397 RRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSR----EALSSMQLQRDILETE-------KES 465
Cdd:TIGR02169  155 RRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRrereKAERYQALLKEKREYEgyellkeKEA 234

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  466 LHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLS---QDKGTLNHLALQ-----LEQERDQLREQQKMLQ 537
Cdd:TIGR02169  235 LERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNkkiKDLGEEEQLRVKekigeLEAEIASLERSIAEKE 314

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  538 QEQAGMREQLTQtgqqlglIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVTNKKQALEKQLAQSLQDQ 617
Cdd:TIGR02169  315 RELEDAEERLAK-------LEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDEL 387

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  618 EAQMDILQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAERNSLENSLFEAQRLTTQLQTQQEQLEGKAEAA 697
Cdd:TIGR02169  388 KDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKY 467

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  698 QLARRALQVEIERLKsdwevRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHrekDTLS-LSLAEEKEAA 776
Cdd:TIGR02169  468 EQELYDLKEEYDRVE-----KELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVH---GTVAqLGSVGERYAT 539

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  777 ARWMEQQKELLTRSAADREALQGEIQNLKQ-----------------ERDESLLQLEHEMQQALSLKDAEK--------- 830
Cdd:TIGR02169  540 AIEVAAGNRLNNVVVEDDAVAKEAIELLKRrkagratflplnkmrdeRRDLSILSEDGVIGFAVDLVEFDPkyepafkyv 619

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  831 ---SLLSKELSGAHRELERARQEAQNQQVQAEATVTT----MTKELRTLQVQFEEAISTHQREADTLREKLREIAAERSS 903
Cdd:TIGR02169  620 fgdTLVVEDIEAARRLMGKYRMVTLEGELFEKSGAMTggsrAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRR 699

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  904 VRREAEELQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKR 983
Cdd:TIGR02169  700 IENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEE 779

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  984 SKEEQEQKLLLLQEAQVaaQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQhRQ 1063
Cdd:TIGR02169  780 ALNDLEARLSHSRIPEI--QAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEK-EI 856

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1064 KNLQESL-ELQRQVAEAQAA-------HDGVQKEVLGLRQKLAEVEA---SGETRAKQLEGHLCESQRAEQTLQAELCRI 1132
Cdd:TIGR02169  857 ENLNGKKeELEEELEELEAAlrdlesrLGDLKKERDELEAQLRELERkieELEAQIEKKRKRLSELKAKLEALEEELSEI 936


                   ....*.
gi 1720355914 1133 TRKLQE 1138
Cdd:TIGR02169  937 EDPKGE 942
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
290-832 5.12e-10

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 64.29  E-value: 5.12e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  290 RRQQREQELRLRLESSQEEAAGLREQLSGYRQELRTsqrlLQDRAQEHEDLLGQLEAQRQEAQLSQASVHLLEREKEALE 369
Cdd:PRK02224   182 LSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAE----LDEEIERYEEQREQARETRDEADEVLEEHEERREELETLE 257

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  370 TTMEELRAK--ADIREAETQKLEVtnAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSRE 447
Cdd:PRK02224   258 AEIEDLRETiaETEREREELAEEV--RDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRV 335

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  448 ALSSmqlqrdiLETEKESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQLEQERD 527
Cdd:PRK02224   336 AAQA-------HNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLG 408

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  528 QLREQQKMLQQEQAGMREQLTQTgqqlgliRAERRSLKETCGHLEQKQDhlEKQVVLLGQENAQlREQVGQVTNKKQALE 607
Cdd:PRK02224   409 NAEDFLEELREERDELREREAEL-------EATLRTARERVEEAEALLE--AGKCPECGQPVEG-SPHVETIEEDRERVE 478

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  608 KqLAQSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAERNSLENSLFEAQRLTTQLQTQQ 687
Cdd:PRK02224   479 E-LEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKR 557

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  688 EQLEGKAEAAQLARRALQvEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLH-REKDTLS 766
Cdd:PRK02224   558 EAAAEAEEEAEEAREEVA-ELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERlAEKRERK 636

                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720355914  767 LSLAEEKEAAArwMEQQKELLTRSAADREALQGEIQNLKQERDESLLQ---LEHEMQQALSLKDAEKSL 832
Cdd:PRK02224   637 RELEAEFDEAR--IEEAREDKERAEEYLEQVEEKLDELREERDDLQAEigaVENELEELEELRERREAL 703
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 27-671 2.43e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 62.26  E-value: 2.43e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914   27 LLRQQLEHMQKANDTLARELTRATHSLVHLQRKLELQESQRLSLRQprdilplwrQAKALQTHLAELRASTERGLTDVQA 106
Cdd:COG1196    236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELEL---------ELEEAQAEEYELLAELARLEQDIAR 306

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  107 DMTRTAQRlhmaclnldshlrltassmtSDLEQRLREQAREMLQLQGQWAAEKVALQARLSEQTLLVEKLSVQKEQGERA 186
Cdd:COG1196    307 LEERRREL--------------------EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA 366

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  187 ILTLKSDIQRLKSRRSGGQLAVDELRDEVESLHHVLASIKEVAQSDAmcpELAWSSSIEVREAQARLRspprsvsphqrm 266
Cdd:COG1196    367 LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALL---ERLERLEEELEELEEALA------------ 431

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  267 spARTSSPTSLHPALQAVQAAIERRQQREQELRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEA 346
Cdd:COG1196    432 --ELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG 509

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  347 QRQEAQLSQASvhLLEREKEALETTMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQG 426
Cdd:COG1196    510 VKAALLLAGLR--GLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAA 587

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  427 RVEQLEEKVSGLRKELATSREALSSMQLQRDILEtekeslhgaLAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLE 506
Cdd:COG1196    588 LAAALARGAIGAAVDLVASDLREADARYYVLGDT---------LLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSA 658

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  507 GLSQDKGTLNHLALQLEQERDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKEtcghLEQKQDHLEKQVVLLG 586
Cdd:COG1196    659 GGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLE----EELEEEALEEQLEAER 734

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  587 QENAQLREQVGQVTNKKQALEKQLAQSLQDQEAQMDILQEALHEK---NTLSEERAqllakQEALERHSELvTKEAADLR 663
Cdd:COG1196    735 EELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALgpvNLLAIEEY-----EELEERYDFL-SEQREDLE 808


                   ....*...
gi 1720355914  664 AERNSLEN 671
Cdd:COG1196    809 EARETLEE 816
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 306-653 2.60e-09

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 62.28  E-value: 2.60e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  306 QEEAAGLREQLSGYRQELRTSQRLL---QDRAQEHEDLLGQLEAQRQ--EAQLSQASVHL------------LEREKEAL 368
Cdd:COG3096    277 ANERRELSERALELRRELFGARRQLaeeQYRLVEMARELEELSARESdlEQDYQAASDHLnlvqtalrqqekIERYQEDL 356

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  369 ETTMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELA----------------QQSERSLRE------------ 420
Cdd:COG3096    357 EELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLAdyqqaldvqqtraiqyQQAVQALEKaralcglpdltp 436

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  421 ------LEASQGRVEQLEEKVSGLRKELATSREALS----SMQLQRDIL-ETEKESLHGALAQAESGNADLELLVTRLKA 489
Cdd:COG3096    437 enaedyLAAFRAKEQQATEEVLELEQKLSVADAARRqfekAYELVCKIAgEVERSQAWQTARELLRRYRSQQALAQRLQQ 516

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  490 EGMEQQD------SLAKMAALLEGLSQDKGTLNHLALQLEQERDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRS 563
Cdd:COG3096    517 LRAQLAEleqrlrQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKE 596

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  564 LKETCGHLEQKQDHLEkqvvllgqenaQLREQVGqvtnkkqalekqlaQSLQDQEAQMDILQEALHEKNTLSEERAQLLA 643
Cdd:COG3096    597 LAARAPAWLAAQDALE-----------RLREQSG--------------EALADSQEVTAAMQQLLEREREATVERDELAA 651

                          410
                   ....*....|
gi 1720355914  644 KQEALERHSE 653
Cdd:COG3096    652 RKQALESQIE 661
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 981-1551 3.71e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 61.49  E-value: 3.71e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  981 LKRSKEEQEQKLLLLQEAQVAAQKEAY-----ELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQV 1055
Cdd:COG1196    218 LKEELKELEAELLLLKLRELEAELEELeaeleELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAEL 297

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1056 SRDAQHRQKNLQESLELQRQVAEAQAAHDGVQKEVLGLRQKLAEVEASGETRAKQLEghlcESQRAEQTLQAELCRITRK 1135
Cdd:COG1196    298 ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELE----EAEAELAEAEEALLEAEAE 373

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1136 LQEASNQADSLQRSLDNACSRVHVLEQELAKAEGARCNAEAQLGRLwstlcsglgqsrnllaspkrphspttgssqtrpg 1215
Cdd:COG1196    374 LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERL---------------------------------- 419

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1216 rqrtspptrsysparwpspvpvdpksevidvafvRDALRDLVQGLLEAQQERDNSGIQVANLSSQLSEAERERLRLQSRV 1295
Cdd:COG1196    420 ----------------------------------EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELL 465

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1296 EQLQRDLADAEEGQRRAESALQSAQAARALQKEALQRLETEHLASARAAGQERRRLQEQVDTLRQALEESSRPSQSLADK 1375
Cdd:COG1196    466 AELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALA 545

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1376 GRLLEQPlqqvlphsRRDRAERRALREQTTSLRTERARLQGELAALRTRLIQTEQETLKKEEDRAMLGAKKELLLQSLSH 1455
Cdd:COG1196    546 AALQNIV--------VEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYV 617

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1456 LHQEVDGALRQSQQLQAQMAELEQAHTQRLQELAAQHQRDLAAEAQRLHEAQLQATQALESCEQIHQQRVKVLERQVASL 1535
Cdd:COG1196    618 LGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEE 697

                          570
                   ....*....|....*.
gi 1720355914 1536 KKRLDKEVWQRQQQAH 1551
Cdd:COG1196    698 ALLAEEEEERELAEAE 713
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
835-1424 4.10e-09

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 61.47  E-value: 4.10e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  835 KELSGAHRELERARQEAQnqqvqaeatvttMTKELRTLQVQFEEAISThQREADTLREKLR--EIAAERSSVRREAEELQ 912
Cdd:COG4913    235 DDLERAHEALEDAREQIE------------LLEPIRELAERYAAARER-LAELEYLRAALRlwFAQRRLELLEAELEELR 301

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  913 AQLNVAHERLAELRQELQASEESREGLQREALGArraledEVQEKDvlqhsntELRASIHRAEQEKASLKRSKEEQEQKL 992
Cdd:COG4913    302 AELARLEAELERLEARLDALREELDELEAQIRGN------GGDRLE-------QLEREIERLERELEERERRRARLEALL 368

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  993 LLLQEAQVAAQKEAYELR----TRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVS---RDAQHRQKN 1065
Cdd:COG4913    369 AALGLPLPASAEEFAALRaeaaALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSnipARLLALRDA 448

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1066 LQESLELQR----------QVAEAQAA-HDGVQKEVLGLRQKL-----AEVEASGETRAKQLEGHLcESQRAEQTLqael 1129
Cdd:COG4913    449 LAEALGLDEaelpfvgeliEVRPEEERwRGAIERVLGGFALTLlvppeHYAAALRWVNRLHLRGRL-VYERVRTGL---- 523

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1130 critRKLQEASNQADSLQRSLDNACSRVHV-LEQELAKAEGARC-NAEAQLgrlwstlcsglgqsrnllaspKRPHSPTT 1207
Cdd:COG4913    524 ----PDPERPRLDPDSLAGKLDFKPHPFRAwLEAELGRRFDYVCvDSPEEL---------------------RRHPRAIT 578

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1208 GSSQTRPGRQRTSPPTRSYSPARWpspvpvdpkseVIdVAFVRDALRDLVQGLLEAQQERDNSGIQVANLSSQLSEAERE 1287
Cdd:COG4913    579 RAGQVKGNGTRHEKDDRRRIRSRY-----------VL-GFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQER 646

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1288 RLRLQS---------RVEQLQRDLADAEEGQRRAESA---LQSAQAARALQKEALQRLETEHlasaRAAGQERRRLQEQV 1355
Cdd:COG4913    647 REALQRlaeyswdeiDVASAEREIAELEAELERLDASsddLAALEEQLEELEAELEELEEEL----DELKGEIGRLEKEL 722

                          570       580       590       600       610       620       630
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720355914 1356 DTLRQALEESSRPSQSLADKGRL-LEQPLQQVLPHSRRDRAE---RRALREQTTSLRTERARLQGELAALRTR 1424
Cdd:COG4913    723 EQAEEELDELQDRLEAAEDLARLeLRALLEERFAAALGDAVErelRENLEERIDALRARLNRAEEELERAMRA 795
PTZ00121 PTZ00121
MAEBL; Provisional
 280-966 7.32e-09

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 60.93  E-value: 7.32e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  280 ALQAVQAAIERRQQ--REQELRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQ-DRAQEHEDLLGQLEAQRQEAQLSQA 356
Cdd:PTZ00121  1148 AEDAKRVEIARKAEdaRKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKaEAARKAEEERKAEEARKAEDAKKAE 1227

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  357 SVHLLE--REKEALETTMEELRAKADIREAETQKLEvtnAELRRSLLLRAEQKAElAQQSERSLRELEASQGRVEQLEEK 434
Cdd:PTZ00121  1228 AVKKAEeaKKDAEEAKKAEEERNNEEIRKFEEARMA---HFARRQAAIKAEEARK-ADELKKAEEKKKADEAKKAEEKKK 1303

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  435 VSGLRKElatSREALSSMQLQRDILETEKESlHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGT 514
Cdd:PTZ00121  1304 ADEAKKK---AEEAKKADEAKKKAEEAKKKA-DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK 1379

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  515 LNHLALQLEQERDQLREQQKMlqqeqagmrEQLTQTGQQLGLIRAERRSLKETCGHLEQKQ--DHLEKQVvllgqENAQL 592
Cdd:PTZ00121  1380 ADAAKKKAEEKKKADEAKKKA---------EEDKKKADELKKAAAAKKKADEAKKKAEEKKkaDEAKKKA-----EEAKK 1445

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  593 REQVgqvtnKKQALEKQLAQSLQDQEAQMDILQEAlhekntlsEERAQLLAKQEALERHSELVTKEAADLR--AERNSLE 670
Cdd:PTZ00121  1446 ADEA-----KKKAEEAKKAEEAKKKAEEAKKADEA--------KKKAEEAKKADEAKKKAEEAKKKADEAKkaAEAKKKA 1512

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  671 NSLFEAQRLTTQLQTQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELA 750
Cdd:PTZ00121  1513 DEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEA 1592

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  751 HTEDLARLHREKDTLSLSLAEEKEAAARWMEQQKElltrsaadREALQGEIQNLKQERDESLLQLEhEMQQALSLKDAEK 830
Cdd:PTZ00121  1593 RIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKK--------AEEEKKKVEQLKKKEAEEKKKAE-ELKKAEEENKIKA 1663

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  831 SLLSKELSGAHRELERARQEAQNQQVQAEATVTTMTKELRTLQVQFEEAISTHQREADTLREKLREIAAERssVRREAEE 910
Cdd:PTZ00121  1664 AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEE--AKKEAEE 1741

                          650       660       670       680       690
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1720355914  911 LQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQHSNTE 966
Cdd:PTZ00121  1742 DKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVD 1797
PTZ00121 PTZ00121
MAEBL; Provisional
 455-1180 8.66e-09

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 60.54  E-value: 8.66e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  455 QRDILETEKESLHGALAQAESGNADLEllvtRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQLEQERDQLREQQK 534
Cdd:PTZ00121  1044 EKDIIDEDIDGNHEGKAEAKAHVGQDE----GLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEE 1119

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  535 MLQQEQAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVTNKKQALEKQLAQSL 614
Cdd:PTZ00121  1120 AKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDA 1199

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  615 QDQEAQmdilQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAE--RNSLENSLFEAQRLTTQLQTQQEQLEG 692
Cdd:PTZ00121  1200 RKAEAA----RKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEeeRNNEEIRKFEEARMAHFARRQAAIKAE 1275

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  693 KAEAAQLARRALQV-EIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEdlarlhrekdtlslslAE 771
Cdd:PTZ00121  1276 EARKADELKKAEEKkKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKK----------------AE 1339

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  772 EK----EAAARWMEQQKELLTRSAADREALQGEIQNLKQERDESLLQLEHEMQQALSLKDAEKSllsKELSGAHRELERA 847
Cdd:PTZ00121  1340 EAkkaaEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED---KKKADELKKAAAA 1416

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  848 RQEAQNQQVQAEATvttmtKELRTLQVQFEEAisthqREADTLREKLREiaaerssvRREAEELQAQLNVAhERLAELRQ 927
Cdd:PTZ00121  1417 KKKADEAKKKAEEK-----KKADEAKKKAEEA-----KKADEAKKKAEE--------AKKAEEAKKKAEEA-KKADEAKK 1477

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  928 ELQASEESREGLQREALGARRAleDEVQEKDVLQHSNTELRasihRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAY 1007
Cdd:PTZ00121  1478 KAEEAKKADEAKKKAEEAKKKA--DEAKKAAEAKKKADEAK----KAEEAKKADEAKKAEEAKKADEAKKAEEKKKADEL 1551

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1008 ELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNLQ-ESLELQRQVAEAQAAHDGV 1086
Cdd:PTZ00121  1552 KKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEaKKAEEAKIKAEELKKAEEE 1631

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1087 QKEVLGLRQKLAEveasgetrakqleghlcESQRAEQTLQAELCRITRKLQEASNQADSLQRSldnacsrvhvleQELAK 1166
Cdd:PTZ00121  1632 KKKVEQLKKKEAE-----------------EKKKAEELKKAEEENKIKAAEEAKKAEEDKKKA------------EEAKK 1682

                          730
                   ....*....|....
gi 1720355914 1167 AEGARCNAEAQLGR 1180
Cdd:PTZ00121  1683 AEEDEKKAAEALKK 1696
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 280-574 9.52e-09

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 60.47  E-value: 9.52e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  280 ALQAVQAAIERRQQREQELRLRLESSQEEAAGLREQLSGYRQEL---RTSQRLLQDRAQEHEDLLGQLEAQRQ--EAQLS 354
Cdd:TIGR02169  710 ELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIenvKSELKELEARIEELEEDLHKLEEALNdlEARLS 789

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  355 QASVHLLEREKEALETTMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEK 434
Cdd:TIGR02169  790 HSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEE 869

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  435 VSGLRKELATSREALSSMQLQRDILETEKESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGT 514
Cdd:TIGR02169  870 LEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEE 949

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720355914  515 LNHLAlQLEQERDQLREQQKMLQ-------QEQAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQK 574
Cdd:TIGR02169  950 ELSLE-DVQAELQRVEEEIRALEpvnmlaiQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015
MARTX_Nterm NF012221
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ...
 776-1106 1.76e-08

MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.


Pssm-ID: 467957 [Multi-domain]  Cd Length: 1848  Bit Score: 59.85  E-value: 1.76e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  776 AARWMEQQKELLTRSAADREALQG--EIQNLKQERD------ESLLQLEHEMQQALSLKDAEKSLLSKELSGAHREleRA 847
Cdd:NF012221  1497 ASAWQQKTLKLTAKAGSNRLEFKGtgHNDGLGYILDnvvatsESSQQADAVSKHAKQDDAAQNALADKERAEADRQ--RL 1574

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  848 RQEAQNQqvqaeatvttmTKELRTLQVQFEeaiSTHQREADTLREklreiaAERSSVRREAEELQAQLNVAHERLAELRQ 927
Cdd:NF012221  1575 EQEKQQQ-----------LAAISGSQSQLE---STDQNALETNGQ------AQRDAILEESRAVTKELTTLAQGLDALDS 1634

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  928 ELQASEESREGLqREALGARraLEDEVQEK--DVLQHSNTELRAS----IHRAEQEKASLKRSKEEQEQKLLLLQEAQVA 1001
Cdd:NF012221  1635 QATYAGESGDQW-RNPFAGG--LLDRVQEQldDAKKISGKQLADAkqrhVDNQQKVKDAVAKSEAGVAQGEQNQANAEQD 1711

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1002 AQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNlqESLELQRQVAEAQa 1081
Cdd:NF012221  1712 IDDAKADAEKRKDDALAKQNEAQQAESDANAAANDAQSRGEQDASAAENKANQAQADAKGAKQD--ESDKPNRQGAAGS- 1788

                          330       340
                   ....*....|....*....|....*
gi 1720355914 1082 ahdgvqkevlGLRQKLAEVEASGET 1106
Cdd:NF012221  1789 ----------GLSGKAYSVEGVAEP 1803
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
433-665 6.85e-08

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 57.62  E-value: 6.85e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  433 EKVSGLRKELATSREALSSMQLQRDILETEKEsLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKmaALLEGLSQDK 512
Cdd:COG4913    228 DALVEHFDDLERAHEALEDAREQIELLEPIRE-LAERYAAARERLAELEYLRAALRLWFAQRRLELLE--AELEELRAEL 304

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  513 GTLNHLALQLEQERDQLREQQKMLQQEQAGmreqltQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQL 592
Cdd:COG4913    305 ARLEAELERLEARLDALREELDELEAQIRG------NGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPAS 378

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720355914  593 REQVgqvtnkkQALEKQLAQSLQDQEAQMDILQEALHE----KNTLSEERAQLLAKQEALERHSELVTKEAADLRAE 665
Cdd:COG4913    379 AEEF-------AALRAEAAALLEALEEELEALEEALAEaeaaLRDLRRELRELEAEIASLERRKSNIPARLLALRDA 448
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
945-1519 1.34e-07

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 56.46  E-value: 1.34e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  945 GARRALEDEVQEKDVLQ----HSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQ 1020
Cdd:COG4913    239 RAHEALEDAREQIELLEpireLAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARL 318

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1021 RDTRRKLQERHRQVRtleaenQRKRQEVSDLQAQVSRDAQHRQKNLQESLELQRQVAEAQAAHDGVQKEVLGLRQKLAEV 1100
Cdd:COG4913    319 DALREELDELEAQIR------GNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAAL 392

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1101 EASGETRAKQLEGHLCESQRAEQTLQAELcritrklQEASNQADSLQRSLDNACSRVHVLEQELAKAEGARCNAEAQLGR 1180
Cdd:COG4913    393 LEALEEELEALEEALAEAEAALRDLRREL-------RELEAEIASLERRKSNIPARLLALRDALAEALGLDEAELPFVGE 465

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1181 L---------WSTLCSGL--GQSRNLLASPKRPHSPTTGSSQTRPGRQRTSPPTRSYSPArwPSPVPVDPKSEVIDVAFV 1249
Cdd:COG4913    466 LievrpeeerWRGAIERVlgGFALTLLVPPEHYAAALRWVNRLHLRGRLVYERVRTGLPD--PERPRLDPDSLAGKLDFK 543

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1250 RDALRDLVQGLL-----------EAQQERDNSGIQVANLSSQLSE-------------------AERERLRLQSRVEQLQ 1299
Cdd:COG4913    544 PHPFRAWLEAELgrrfdyvcvdsPEELRRHPRAITRAGQVKGNGTrhekddrrrirsryvlgfdNRAKLAALEAELAELE 623

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1300 RDLADAEEGQRRAESALQSAQAaralQKEALQRLE--TEHLASARAAGQERRRLQEQvdtlRQALEESSRPSQSLADKGR 1377
Cdd:COG4913    624 EELAEAEERLEALEAELDALQE----RREALQRLAeySWDEIDVASAEREIAELEAE----LERLDASSDDLAALEEQLE 695

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1378 LLEQPLQQVlphsrrdRAERRALREQTTSLRTERARLQGELAALRTRLIQTEQetLKKEEDRAMLGAKKELLLQSLSHL- 1456
Cdd:COG4913    696 ELEAELEEL-------EEELDELKGEIGRLEKELEQAEEELDELQDRLEAAED--LARLELRALLEERFAAALGDAVERe 766

                          570       580       590       600       610       620       630
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720355914 1457 -----HQEVDGALRQSQQLQAQMAELEQAHTQRLQELAAQHQRDLAA-----------EAQRLHEAQLQATQALESCEQ 1519
Cdd:COG4913    767 lrenlEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESlpeylalldrlEEDGLPEYEERFKELLNENSI 845
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
280-669 1.67e-07

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 56.20  E-value: 1.67e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  280 ALQAVQAAIERRQQREQELRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVH 359
Cdd:PRK02224   238 EADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARRE 317

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  360 LLEREKEALETTMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLR 439
Cdd:PRK02224   318 ELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELR 397

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  440 KELATSREALSSMQLQRDILETEKESLHGALAQAEsgnADLEllvtrlkaegmEQQDSLAKMAALLEG-----LSQDKGT 514
Cdd:PRK02224   398 ERFGDAPVDLGNAEDFLEELREERDELREREAELE---ATLR-----------TARERVEEAEALLEAgkcpeCGQPVEG 463

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  515 LNHlALQLEQERDQLREqqkmLQQEQAGMREQLTQTGQQLGliRAErrSLKETCGHLEQKQDHLEKQVVLLGQENAQL-- 592
Cdd:PRK02224   464 SPH-VETIEEDRERVEE----LEAELEDLEEEVEEVEERLE--RAE--DLVEAEDRIERLEERREDLEELIAERRETIee 534

                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720355914  593 -REQVGQVTNKKQALEKQLAQSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQEALERHSELVTkEAADLRAERNSL 669
Cdd:PRK02224   535 kRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLA-AIADAEDEIERL 611
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
285-473 2.30e-07

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 55.69  E-value: 2.30e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  285 QAAIERRQQREQELRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQL-EAQRQEAQLSQASVHLLER 363
Cdd:COG4913    266 AARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELdELEAQIRGNGGDRLEQLER 345

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  364 EKEALETTMEELRAKADIREAETQKLEVTNAELRRSLllrAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELA 443
Cdd:COG4913    346 EIERLERELEERERRRARLEALLAALGLPLPASAEEF---AALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELR 422

                          170       180       190
                   ....*....|....*....|....*....|
gi 1720355914  444 TSREALSSMQLQRDILETEKESLHGALAQA 473
Cdd:COG4913    423 ELEAEIASLERRKSNIPARLLALRDALAEA 452
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 1243-1549 2.67e-07

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 55.83  E-value: 2.67e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1243 VIDVAFVRDALRDLVQGLLEAQQERDNSGIQVANLSSQLSEAERERLRLQSRVEQLQRDLADAEEGQRRAESALQSAQAA 1322
Cdd:TIGR02168  231 VLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRER 310

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1323 RALQKEALQRLETEhlasARAAGQERRRLQEQVDTLRQALEESSRPSQSLADKGRLLEQPLQQVLPHSRRDRAERRALRE 1402
Cdd:TIGR02168  311 LANLERQLEELEAQ----LEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS 386

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1403 QTTSLRTERARLQGELAALRTRLIQTEQETLKKEEDRAMLGAKKELLlqslshlhqevdgalrQSQQLQAQMAELEQAHT 1482
Cdd:TIGR02168  387 KVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA----------------ELKELQAELEELEEELE 450

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720355914 1483 QrLQELAAQHQRDLAAEAQRLHEAQlQATQALESCEQIHQQRVKVLERQVASLKKRLD--KEVWQRQQQ 1549
Cdd:TIGR02168  451 E-LQEELERLEEALEELREELEEAE-QALDAAERELAQLQARLDSLERLQENLEGFSEgvKALLKNQSG 517
COG5022 COG5022
Myosin heavy chain [General function prediction only];
766-1076 3.75e-07

Myosin heavy chain [General function prediction only];


Pssm-ID: 227355 [Multi-domain]  Cd Length: 1463  Bit Score: 55.08  E-value: 3.75e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  766 SLSLAEEKEAAARwMEQQKELLTRSAADREALQGEIQNLKQERDE----SLLQLEHEmQQALSLKDAEKSLLSKELSgaH 841
Cdd:COG5022    850 KFGRSLKAKKRFS-LLKKETIYLQSAQRVELAERQLQELKIDVKSisslKLVNLELE-SEIIELKKSLSSDLIENLE--F 925

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  842 RELERARQEAQNQQVQAEATVTTMtkelrtlQVQFEEAISTHQREAdtlreKLREIAAERSSVRREAEELQAQLNVAHER 921
Cdd:COG5022    926 KTELIARLKKLLNNIDLEEGPSIE-------YVKLPELNKLHEVES-----KLKETSEEYEDLLKKSTILVREGNKANSE 993

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  922 LAELRQELQaseesreglqrEALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQK-LLLLQEAQV 1000
Cdd:COG5022    994 LKNFKKELA-----------ELSKQYGALQESTKQLKELPVEVAELQSASKIISSESTELSILKPLQKLKgLLLLENNQL 1062

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1001 AAQKEAYELRTRLQELEraqrDTRRKLQERhrqVRTLEAENQRKRQEVSDLQA-------QVSRDAQHRQKNLQESLELQ 1073
Cdd:COG5022   1063 QARYKALKLRRENSLLD----DKQLYQLES---TENLLKTINVKDLEVTNRNLvkpanvlQFIVAQMIKLNLLQEISKFL 1135


                   ...
gi 1720355914 1074 RQV 1076
Cdd:COG5022   1136 SQL 1138
PTZ00121 PTZ00121
MAEBL; Provisional
 247-794 5.14e-07

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 54.76  E-value: 5.14e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  247 REAQARLRSPPRSVSPHQRMSPARTSSPTSLHPALQAVQAAIERRQQREQELRLRLESSQEEAAGLREQLSGYRQELRTS 326
Cdd:PTZ00121  1238 DAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKA 1317

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  327 QRLlQDRAQEHEDLLGQLEAQRQEAQlSQASVHLLEREKEALETTMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQ 406
Cdd:PTZ00121  1318 DEA-KKKAEEAKKKADAAKKKAEEAK-KAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADE 1395

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  407 ---KAELAQQSERSLRELEASQGRVEQLEEKVSGLRK--ELATSREALSSMQLQRDILEtEKESLHGALAQAESGNADLE 481
Cdd:PTZ00121  1396 akkKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKadEAKKKAEEAKKADEAKKKAE-EAKKAEEAKKKAEEAKKADE 1474

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  482 LlvtRLKAEGMEQQDSLAKMAAL-------LEGLSQDKGTLNHLALQLEQER-DQLREQQKMLQQEQAGMREQLTQTGQq 553
Cdd:PTZ00121  1475 A---KKKAEEAKKADEAKKKAEEakkkadeAKKAAEAKKKADEAKKAEEAKKaDEAKKAEEAKKADEAKKAEEKKKADE- 1550

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  554 lgLIRAERRSLKETCGHLEQKQDHLEKQVVLL--GQENAQLREQVGQVTNKKQALEKQLAQSLQDQEAQMDILQEALHEK 631
Cdd:PTZ00121  1551 --LKKAEELKKAEEKKKAEEAKKAEEDKNMALrkAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA 1628

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  632 NTLSEERAQLLAKQEALERHSELVTKE-------AADLRAERNSLENSLFEAQRLTTQLQTQQEQLEGKAEAAQLARRAL 704
Cdd:PTZ00121  1629 EEEKKKVEQLKKKEAEEKKKAEELKKAeeenkikAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELK 1708

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  705 QVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHREKDTLSLSLAEEKEAAARWMEQQK 784
Cdd:PTZ00121  1709 KKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEE 1788

                          570
                   ....*....|
gi 1720355914  785 ELLTRSAADR 794
Cdd:PTZ00121  1789 DEKRRMEVDK 1798
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 840-1060 5.92e-07

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 53.61  E-value: 5.92e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  840 AHRELERARQEAQNQQVQAEATVTTMTKELRTLQVQFEEAisthQREADTLREKLREIAAERSSVRREAEELQAQLNVAH 919
Cdd:COG4942     21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL----ERRIAALARRIRALEQELAALEAELAELEKEIAELR 96

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  920 ERLAELRQE----LQASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLL 995
Cdd:COG4942     97 AELEAQKEElaelLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720355914  996 QEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQ 1060
Cdd:COG4942    177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
750-1176 8.80e-07

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 53.77  E-value: 8.80e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  750 AHTEDLARLHREKDTLSLSLAE-EKEAAARWMEQQKELLTRSAADREALQGEIQNLKQERDESLLQLEHEMQQALSLKDA 828
Cdd:COG4913    259 ELAERYAAARERLAELEYLRAAlRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGD 338

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  829 EKSLLSKELSGAHRELERARQEAQNQQVQAEA---TVTTMTKELRTLQVQFEEAISTHQREADTLREKLREIAAERSSVR 905
Cdd:COG4913    339 RLEQLEREIERLERELEERERRRARLEALLAAlglPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLR 418

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  906 REAEELQAQLNV-----------AHERLAELRQELQASEE------------SREGLQREA----LG--ARRALEDEVQE 956
Cdd:COG4913    419 RELRELEAEIASlerrksniparLLALRDALAEALGLDEAelpfvgelievrPEEERWRGAiervLGgfALTLLVPPEHY 498

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  957 KDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRL------------QELERAQR--- 1021
Cdd:COG4913    499 AAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDPDSLAGKLDFKPHPFRAWLEAELgrrfdyvcvdspEELRRHPRait 578

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1022 --------------DTRRKLQERH-------RQVRTLEAENQRKRQEVSDLQAQVsRDAQHRQKNLQESLELQRQVAEAQ 1080
Cdd:COG4913    579 ragqvkgngtrhekDDRRRIRSRYvlgfdnrAKLAALEAELAELEEELAEAEERL-EALEAELDALQERREALQRLAEYS 657

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1081 AA---HDGVQKEVLGLRQKLAEVEASGetrakqleGHLCESQRAEQTLQAELCRITRKLQEASNQADSLQRSLDNAcsrv 1157
Cdd:COG4913    658 WDeidVASAEREIAELEAELERLDASS--------DDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQA---- 725

                          490
                   ....*....|....*....
gi 1720355914 1158 hvlEQELAKAEGARCNAEA 1176
Cdd:COG4913    726 ---EEELDELQDRLEAAED 741
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 377-613 9.09e-07

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 52.84  E-value: 9.09e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  377 AKADIREAETQKLEvtnaELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREALSSMQLQR 456
Cdd:COG4942     17 AQADAAAEAEAELE----QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  457 DILETEKESLHGALAQAesgNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQLEQERDQLREQQKML 536
Cdd:COG4942     93 AELRAELEAQKEELAEL---LRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720355914  537 QQEQAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVTNKKQALEKQLAQS 613
Cdd:COG4942    170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
390-605 1.05e-06

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 53.77  E-value: 1.05e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  390 EVTNAELRRSLLLRAEQKAELAQQSERSLRELEA---------SQGRVEQLEEKVSGLRKELATSREALSSMQLQRDILE 460
Cdd:COG4913    243 ALEDAREQIELLEPIRELAERYAAARERLAELEYlraalrlwfAQRRLELLEAELEELRAELARLEAELERLEARLDALR 322

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  461 TEKESLHGALAQaeSGNADLEllvtRLKAEGMEQQDSLAKMAALLEGLSQdkgTLNHLALQLEQERDQLREQQKMLQQEQ 540
Cdd:COG4913    323 EELDELEAQIRG--NGGDRLE----QLEREIERLERELEERERRRARLEA---LLAALGLPLPASAEEFAALRAEAAALL 393

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720355914  541 AGMREQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVTNKKQA 605
Cdd:COG4913    394 EALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEALGLDEA 458
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1278-1498 2.57e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 51.69  E-value: 2.57e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1278 SSQLSEAERERLRLQSRVEQLQRDLADAEEGQRRAESALQSAQAARALQKEALQRLETEHLASAR---AAGQERRRLQEQ 1354
Cdd:COG4942     19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAelaELEKEIAELRAE 98

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1355 VDTLRQALEESSRPSQSLADKGRLLE----QPLQQVLPHSRRDRAERRALREQTTSLRTERARLQGELAALRTRLIQTEQ 1430
Cdd:COG4942     99 LEAQKEELAELLRALYRLGRQPPLALllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720355914 1431 ETLKKEEDRAMLGAKKELLLQSLSHLHQEVDGALRQSQQLQAQMAELEQAHTQRLQELAAQHQRDLAA 1498
Cdd:COG4942    179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 21-472 2.81e-06

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 52.25  E-value: 2.81e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914   21 LSQVNTLLRQQLEHMQKANDTLARELTRATHSLVHLQRKLELQESQRLSLRqpRDILPLWRQAKALQTHLAELRASTERG 100
Cdd:COG1196    328 LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE--EELEELAEELLEALRAAAELAAQLEEL 405

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  101 LTDVQADMTRTAQRLHMACLNLDSHLRLTASsmTSDLEQRLREQAREMLQLQGQWAAEKVALQARLSEQTLLVEKLSVQK 180
Cdd:COG1196    406 EEAEEALLERLERLEEELEELEEALAELEEE--EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELL 483

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  181 EQGERAILTLKSDIQRLKSR----RSGGQLAVDELRDEVESLHHVLASIKEVAQSDAMCPELAWSSSIEVREAQA----- 251
Cdd:COG1196    484 EELAEAAARLLLLLEAEADYegflEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVaaaai 563

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  252 ----RLRSPPRSVSPHQRMSPARTSSPTSLHPALQAVQAAIERRQQREQELRLRLESSQEEAAGLREQLSGYRQELRT-- 325
Cdd:COG1196    564 eylkAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTla 643

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  326 -------------SQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVHLLEREKEALETTMEELRAKADIREAETQKLEVT 392
Cdd:COG1196    644 grlrevtlegeggSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEE 723

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  393 NAELRRSLLLRAEQKAELAQQSERSLRE----------LEASQGRVEQLEEKVSGLRK-------ELATSREALSSMQLQ 455
Cdd:COG1196    724 EALEEQLEAEREELLEELLEEEELLEEEaleelpeppdLEELERELERLEREIEALGPvnllaieEYEELEERYDFLSEQ 803

                          490
                   ....*....|....*..
gi 1720355914  456 RDILETEKESLHGALAQ 472
Cdd:COG1196    804 REDLEEARETLEEAIEE 820
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
394-989 3.29e-06

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 51.99  E-value: 3.29e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  394 AELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREALSSMQLQRDILETEKESLHGALAQA 473
Cdd:PRK03918   168 GEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKEL 247

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  474 ESGNADLELLVTRLKaegmEQQDSLAKMAALLEGLSQDKGTLNHLA------LQLEQERDQLREQQKMLQQEQAGMREQL 547
Cdd:PRK03918   248 ESLEGSKRKLEEKIR----ELEERIEELKKEIEELEEKVKELKELKekaeeyIKLSEFYEEYLDELREIEKRLSRLEEEI 323

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  548 TQTGQQLglirAERRSLKETCGHLEQKQDHLEKQVVLLgQENAQLREQVGQVTNKKQALEKQLAqslqdqeaqmdilqea 627
Cdd:PRK03918   324 NGIEERI----KELEEKEERLEELKKKLKELEKRLEEL-EERHELYEEAKAKKEELERLKKRLT---------------- 382

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  628 lhekntlSEERAQLLAKQEALERHSELVTKEAADLRAERNSLEnslfeaQRLTTQLQTQQEQLEGKAEAAQLARRALQVE 707
Cdd:PRK03918   383 -------GLTPEKLEKELEELEKAKEEIEEEISKITARIGELK------KEIKELKKAIEELKKAKGKCPVCGRELTEEH 449

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  708 IERLKSDW-----EVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHREKDTLSLSLAEEKEAAARWMEQ 782
Cdd:PRK03918   450 RKELLEEYtaelkRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEK 529

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  783 QKELLTRsaadreaLQGEIQNLKQErdeslLQLEHEMQQALSLKDAEKSLLSKELSGAHRELERARQEaqnqqvqaeaTV 862
Cdd:PRK03918   530 LKEKLIK-------LKGEIKSLKKE-----LEKLEELKKKLAELEKKLDELEEELAELLKELEELGFE----------SV 587

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  863 TTMTKELRTLQVQFEEAIsthqrEADTLREKLREIAAERSSVRREAEELQAQLNVAHERLAELRQELQA-----SEESRE 937
Cdd:PRK03918   588 EELEERLKELEPFYNEYL-----ELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEElekkySEEEYE 662

                          570       580       590       600       610
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1720355914  938 GLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQE 989
Cdd:PRK03918   663 ELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELE 714
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
601-1112 3.41e-06

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 51.99  E-value: 3.41e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  601 NKKQALEKQLAQSLQDQE---AQMDILQEALHEKNTLSEERAQLLAKQEALErhselvtKEAADLRAERNSLENSlfeaq 677
Cdd:PRK03918   176 RRIERLEKFIKRTENIEElikEKEKELEEVLREINEISSELPELREELEKLE-------KEVKELEELKEEIEEL----- 243

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  678 rlttqlQTQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTE-DLA 756
Cdd:PRK03918   244 ------EKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEkRLS 317

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  757 RLHREKDTLS--LSLAEEKEAAARWMEQQKELLTRSAADRE----------ALQGEIQNLKQERDESLLQLEHEMQQALS 824
Cdd:PRK03918   318 RLEEEINGIEerIKELEEKEERLEELKKKLKELEKRLEELEerhelyeeakAKKEELERLKKRLTGLTPEKLEKELEELE 397

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  825 LKDAEKSLLSKELSGAHRELER---ARQEAQNQQVQAEATVTTMTKELRtlQVQFEEAISTHQREADTLREKLREIAAER 901
Cdd:PRK03918   398 KAKEEIEEEISKITARIGELKKeikELKKAIEELKKAKGKCPVCGRELT--EEHRKELLEEYTAELKRIEKELKEIEEKE 475

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  902 SSVRREAEELQAQLNVAHE--RLAELRQELQASEESREGLQREAL------------------GARRALEDEVQEKDVLQ 961
Cdd:PRK03918   476 RKLRKELRELEKVLKKESEliKLKELAEQLKELEEKLKKYNLEELekkaeeyeklkekliklkGEIKSLKKELEKLEELK 555

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  962 HSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYE-------LRTRLQELERAQRDTRRKLQERHRQV 1034
Cdd:PRK03918   556 KKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNeylelkdAEKELEREEKELKKLEEELDKAFEEL 635

                          490       500       510       520       530       540       550
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720355914 1035 RTLEAENQRKRQEVSDLQAQVSRDAQHRQKNlqESLELQRQVAeaqaahdGVQKEVLGLRQKLAEVEASGETRAKQLE 1112
Cdd:PRK03918   636 AETEKRLEELRKELEELEKKYSEEEYEELRE--EYLELSRELA-------GLRAELEELEKRREEIKKTLEKLKEELE 704
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
288-704 3.42e-06

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 51.69  E-value: 3.42e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  288 IERRQQREQELRlRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVHL--LEREK 365
Cdd:COG4717     70 LKELKELEEELK-EAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELaeLPERL 148

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  366 EALETTMEELRAKADIREAETQKLEVTNAELRRsllLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATS 445
Cdd:COG4717    149 EELEERLEELRELEEELEELEAELAELQEELEE---LLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEEL 225

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  446 REALSSMQLQRDILEtEKESLHGALAQAESGNADLELLVTRLKAEGMEQQdSLAKMAALLEGLSQDKGTLNHLALQLEQE 525
Cdd:COG4717    226 EEELEQLENELEAAA-LEERLKEARLLLLIAAALLALLGLGGSLLSLILT-IAGVLFLVLGLLALLFLLLAREKASLGKE 303

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  526 RDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEK-----QVVLLGQENAQLREQVGQVT 600
Cdd:COG4717    304 AEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEEleeelQLEELEQEIAALLAEAGVED 383

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  601 NKKQALEKQLAQSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAA------DLRAERNSLENSLF 674
Cdd:COG4717    384 EEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEEleeeleELREELAELEAELE 463

                          410       420       430
                   ....*....|....*....|....*....|
gi 1720355914  675 EAQRLTTQLQTQQEQLEGKAEAAQLARRAL 704
Cdd:COG4717    464 QLEEDGELAELLQELEELKAELRELAEEWA 493
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 877-1082 3.74e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 50.92  E-value: 3.74e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  877 EEAISTHQREADTLREKLREIAAERSSVRREAEELQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEDEVQE 956
Cdd:COG4942     26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEE 105

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  957 ----KDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHR 1032
Cdd:COG4942    106 laelLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEE 185

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1033 QVRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNLQESLELQRQVAEAQAA 1082
Cdd:COG4942    186 ERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
 359-1147 3.88e-06

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 51.90  E-value: 3.88e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  359 HLLEREKEALETTMEELRAKAD-IREAETQKLEVTNAELRRSLLLRAEQKAELAQqsersLRELEASQGRVEQLEEKVSG 437
Cdd:pfam02463  166 RLKRKKKEALKKLIEETENLAElIIDLEELKLQELKLKEQAKKALEYYQLKEKLE-----LEEEYLLYLDYLKLNEERID 240

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  438 LRKELATSREALSSMQLQRDILETEKEslhgalaQAESGNADLELLVTRLKAEGMEQQDSLAkmAALLEGLSQDKGTLNH 517
Cdd:pfam02463  241 LLQELLRDEQEEIESSKQEIEKEEEKL-------AQVLKENKEEEKEKKLQEEELKLLAKEE--EELKSELLKLERRKVD 311

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  518 LALQLEQERDQLREQQKMLQQEQAGMREQLTQTgQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVG 597
Cdd:pfam02463  312 DEEKLKESEKEKKKAEKELKKEKEEIEELEKEL-KELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAA 390

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  598 QVTNKKQALEKQLAQSLQDQ-EAQMDILQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAERNSLENSLFEA 676
Cdd:pfam02463  391 KLKEEELELKSEEEKEAQLLlELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKS 470

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  677 QRLTTQLQTQQEQLegkaeaAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLA 756
Cdd:pfam02463  471 EDLLKETQLVKLQE------QLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVA 544

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  757 RlhrekdtlSLSLAEEKEAAARWMEQQKELLTRSAADREALQGEIQNLKQERDESLLQLEHEMQQALSLKDAEKSLLSKE 836
Cdd:pfam02463  545 I--------STAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEAD 616

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  837 LSGAHRELERARQEAQNQQVQAEATVTTMTKELRTLQVqfEEAISTHQREADTLREKLREIAAERSSVRREAEELQAQLN 916
Cdd:pfam02463  617 EDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSL--EEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEI 694

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  917 VAHERLAELRQELQASEESREGLQREALGARRalEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQ 996
Cdd:pfam02463  695 LRRQLEIKKKEQREKEELKKLKLEAEELLADR--VQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLK 772

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  997 EAQVAAQKEAYELRTRLQELEraqRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNLQESLELQRQV 1076
Cdd:pfam02463  773 EKELAEEREKTEKLKVEEEKE---EKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLE 849

                          730       740       750       760       770       780       790
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720355914 1077 AEAQAAHDGVQKEVLGLRQKLAEVEASGETRAKQLEGHLCESQRAEQTLQAELCRITRKLQEASNQADSLQ 1147
Cdd:pfam02463  850 KLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIE 920
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
 517-1129 4.03e-06

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 51.76  E-value: 4.03e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  517 HLALQLEQERDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKEtcgHLEQKQDHLEKQVVLLGQENAQLREQV 596
Cdd:pfam12128  241 PEFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQ---LLRTLDDQWKEKRDELNGELSAADAAV 317

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  597 GQVTNKKQALEKQLAQSLQDqeaqmDILQEALHEKNtLSEERAQLlakqEALERHSELVTKEAADLRAERNSLENSLfeA 676
Cdd:pfam12128  318 AKDRSELEALEDQHGAFLDA-----DIETAAADQEQ-LPSWQSEL----ENLEERLKALTGKHQDVTAKYNRRRSKI--K 385

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  677 QRLTTQLQTQQEQLEGKAEAAQLARRALQVEIERLKSDWevretklqlhlgqlqqQAAQQEQEAQLALERQELAHTEDLA 756
Cdd:pfam12128  386 EQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESEL----------------REQLEAGKLEFNEEEYRLKSRLGEL 449

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  757 RLHREKDTLSLSLAEEKEAAARWMEQQKELLTRSAADREALQGEIQNLKQERDESLLQLEHEMQQALSLKDAEKSLLSKE 836
Cdd:pfam12128  450 KLRLNQATATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQL 529

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  837 LSGAHRELERARQEAQNQQvQAEATVTTMTKELRTLQVQFEEAISTHQREA------DTLREKLREIAAERSSVRREAEE 910
Cdd:pfam12128  530 FPQAGTLLHFLRKEAPDWE-QSIGKVISPELLHRTDLDPEVWDGSVGGELNlygvklDLKRIDVPEWAASEEELRERLDK 608

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  911 LQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEdevQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQ-- 988
Cdd:pfam12128  609 AEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALK---NARLDLRRLFDEKQSEKDKKNKALAERKDSANERln 685

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  989 ----EQKLLL--LQEAQVAAQKEAYELRTRLQEL---------------------ERAQRDTRRKL--QERHRQVRTLEA 1039
Cdd:pfam12128  686 sleaQLKQLDkkHQAWLEEQKEQKREARTEKQAYwqvvegaldaqlallkaaiaaRRSGAKAELKAleTWYKRDLASLGV 765

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1040 ENQ---RKRQEVSDLQAQVSRDAQHRQKNL------QESLELQRQVAEAQAAHdgVQKEVLGLRQKLAEVEASGETRAKQ 1110
Cdd:pfam12128  766 DPDviaKLKREIRTLERKIERIAVRRQEVLryfdwyQETWLQRRPRLATQLSN--IERAISELQQQLARLIADTKLRRAK 843

                          650
                   ....*....|....*....
gi 1720355914 1111 LEGHLCESQRAEQTLQAEL 1129
Cdd:pfam12128  844 LEMERKASEKQQVRLSENL 862
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 74-452 4.30e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 51.60  E-value: 4.30e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914   74 RDILPLWRQAKALQTHLAELRASTERGLTDVQADMTRTAQrlhmacLNLDSHLRLTASSMTSDLEQRLREQAREMLQLQG 153
Cdd:TIGR02168  677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQ------LRKELEELSRQISALRKDLARLEAEVEQLEERIA 750

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  154 QWAAEKVALQARLSEQTLLVEKLSVQKEQGERAILTLKSDIQRLKSRRSGGQLAVDELRDEVESLHhvlasikevaqsda 233
Cdd:TIGR02168  751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLN-------------- 816

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  234 mcpelawsssIEVREAQARLRSPPRSVSPHQRMSPARTSSPTSLHPALQAVQAAIERRQQREQELRLRLESSQEEaaglR 313
Cdd:TIGR02168  817 ----------EEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNE----R 882

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  314 EQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVHLLE-----REKEALETTMEELRAKADIREAETQK 388
Cdd:TIGR02168  883 ASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLeglevRIDNLQERLSEEYSLTLEEAEALENK 962

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720355914  389 LEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREALSSM 452
Cdd:TIGR02168  963 IEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEI 1026
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
521-1036 4.98e-06

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 51.45  E-value: 4.98e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  521 QLEQERDQLREQQKMLQ------QEQAGMREQLTQTGQQLGLIRAERRSLKEtcGHLEQKQDHLEKQVVLLGQENAQLRE 594
Cdd:COG4913    239 RAHEALEDAREQIELLEpirelaERYAAARERLAELEYLRAALRLWFAQRRL--ELLEAELEELRAELARLEAELERLEA 316

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  595 QVGQVTNKKQALEKQLAQSLQDQEAQmdiLQEALHEKNTLSEERAQLLAKQEALERHSEL-VTKEAADLRAERNSLENSL 673
Cdd:COG4913    317 RLDALREELDELEAQIRGNGGDRLEQ---LEREIERLERELEERERRRARLEALLAALGLpLPASAEEFAALRAEAAALL 393

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  674 FEAQRLTTQLQTQQEQLEGKAEAAQLARRALQVEIERLKSdwevretklqlhlgqlQQQAAQQEQEAQLALERQELAHTE 753
Cdd:COG4913    394 EALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER----------------RKSNIPARLLALRDALAEALGLDE 457

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  754 D----LARLH--REKD------------TLSLSLAEEKE---AAARWMEQQKeLLTRSAADREALQGEIQNLKQERDESL 812
Cdd:COG4913    458 AelpfVGELIevRPEEerwrgaiervlgGFALTLLVPPEhyaAALRWVNRLH-LRGRLVYERVRTGLPDPERPRLDPDSL 536

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  813 LQ------------LEHEMQQALS---------LKDAEKSL----LSKELSGAHRELERARQEAQNQ-QVQAEATVTTMT 866
Cdd:COG4913    537 AGkldfkphpfrawLEAELGRRFDyvcvdspeeLRRHPRAItragQVKGNGTRHEKDDRRRIRSRYVlGFDNRAKLAALE 616

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  867 KELRTLqvqfEEAISTHQREADTLREKLREIAAERSSVRREAEELQAQLNV--AHERLAELRQELQASEESR---EGLQR 941
Cdd:COG4913    617 AELAEL----EEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVasAEREIAELEAELERLDASSddlAALEE 692

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  942 EALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQR 1021
Cdd:COG4913    693 QLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLE 772

                          570
                   ....*....|....*
gi 1720355914 1022 DTRRKLQERHRQVRT 1036
Cdd:COG4913    773 ERIDALRARLNRAEE 787
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 304-532 5.44e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 50.53  E-value: 5.44e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  304 SSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVHLLEREKEALETTMEELRAKADIRE 383
Cdd:COG4942     17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  384 AETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEAsqgRVEQLEEKVSGLRKELATSREALSSMQLQRDILETEK 463
Cdd:COG4942     97 AELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVR---RLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720355914  464 ESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQLEQERDQLREQ 532
Cdd:COG4942    174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
mukB PRK04863
chromosome partition protein MukB;
307-671 6.96e-06

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 51.11  E-value: 6.96e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  307 EEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAqrQEAQLSQASVHlLEREKEALETTMEELRAKADIREAET 386
Cdd:PRK04863   286 EEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESD--LEQDYQAASDH-LNLVQTALRQQEKIERYQADLEELEE 362

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  387 QKLEVTNA-ELRRSLLLRAEQKAELAQQSERSLRE--------LEASQGRVEQLEEKVSGLRK----------ELATSRE 447
Cdd:PRK04863   363 RLEEQNEVvEEADEQQEENEARAEAAEEEVDELKSqladyqqaLDVQQTRAIQYQQAVQALERakqlcglpdlTADNAED 442

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  448 ALSSMQLQRDILETEKESLHGALAQAESGNADLEL---LVTRLkAEGMEQQDSLAKMAALLEGLSQDKgtlnHLALQLEQ 524
Cdd:PRK04863   443 WLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQayqLVRKI-AGEVSRSEAWDVARELLRRLREQR----HLAEQLQQ 517

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  525 ERDQLREQQKMLQQEQAGMReQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVTNKKQ 604
Cdd:PRK04863   518 LRMRLSELEQRLRQQQRAER-LLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQ 596

                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  605 ALEKQLAQSLQDQEAQ---MDILQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAERNSLEN 671
Cdd:PRK04863   597 RLAARAPAWLAAQDALarlREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLSQ 666
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
 293-1040 7.42e-06

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 50.82  E-value: 7.42e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  293 QREQELRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDllgqlEAQRQEAQLSQASVHLLEREKEALETTM 372
Cdd:TIGR00606  340 QEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGP-----FSERQIKNFHTLVIERQEDEAKTAAQLC 414

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  373 EELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELA----TSREA 448
Cdd:TIGR00606  415 ADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERelskAEKNS 494

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  449 LSSMQLQRDI-LETEKESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLA------LQ 521
Cdd:TIGR00606  495 LTETLKKEVKsLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLgyfpnkKQ 574

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  522 LEQERDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQK------QDHLEKQVVLLGQENAQLREQ 595
Cdd:TIGR00606  575 LEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKlfdvcgSQDEESDLERLKEEIEKSSKQ 654

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  596 VGQVTNKKQALEKQLAQSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAERNSLENSLFE 675
Cdd:TIGR00606  655 RAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPG 734

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  676 AQRLTTQLQTQQEQLEGKaeaaqlaRRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTE-D 754
Cdd:TIGR00606  735 RQSIIDLKEKEIPELRNK-------LQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVErK 807

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  755 LARLHREKDTLSLSLA--------EEKEAAARWMEQQKELLTRSAADREALQGEIQNLKQERDESLLQLEHEMQQALSLK 826
Cdd:TIGR00606  808 IAQQAAKLQGSDLDRTvqqvnqekQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFE 887

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  827 DAeksllSKELSGAHRELERARQEAQNQQVQAEATVTTMTKELRTLQVQFEEAISTHQREADTLREKLREIAAERSSVRR 906
Cdd:TIGR00606  888 EQ-----LVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIEN 962

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  907 EAEE-LQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRasihraeqEKASLKRSK 985
Cdd:TIGR00606  963 KIQDgKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRK--------RENELKEVE 1034

                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1720355914  986 EEQEQKLLLLQEAQVAAQKEAYE-LRTRLQELERAQRDTRRKLQERHRQVRTLEAE 1040
Cdd:TIGR00606 1035 EELKQHLKEMGQMQVLQMKQEHQkLEENIDLIKRNHVLALGRQKGYEKEIKHFKKE 1090
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
 373-956 8.07e-06

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 50.99  E-value: 8.07e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  373 EELRAKADIREAETQKLEvtNAELRRSLLLRAEQKAELaqQSERSLRELEASQGRVE--------QLEEKVSGLRKELAT 444
Cdd:pfam12128  237 MKIRPEFTKLQQEFNTLE--SAELRLSHLHFGYKSDET--LIASRQEERQETSAELNqllrtlddQWKEKRDELNGELSA 312

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  445 SREALSSMQLQRDILETEK--------ESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDkgtLN 516
Cdd:pfam12128  313 ADAAVAKDRSELEALEDQHgafldadiETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQ---NN 389

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  517 HLALQLEQERDQLREQQKMLQQEQAGMREQL-----TQTGQQLGLIRAERRSLKETCGHLEQKQDhlekQVVLLGQENAQ 591
Cdd:pfam12128  390 RDIAGIKDKLAKIREARDRQLAVAEDDLQALeselrEQLEAGKLEFNEEEYRLKSRLGELKLRLN----QATATPELLLQ 465

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  592 LREQVGQVTNKKQALEKQLA--QSLQDQEAQMDILQEALHEKNTLSEERAQLLaKQEALERHSELVTKEA---ADLRAER 666
Cdd:pfam12128  466 LENFDERIERAREEQEAANAevERLQSELRQARKRRDQASEALRQASRRLEER-QSALDELELQLFPQAGtllHFLRKEA 544

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  667 NSLENSLFE-AQRLTTQLQTQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALE 745
Cdd:pfam12128  545 PDWEQSIGKvISPELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAE 624

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  746 RQELAHTEDLARLHREKDTLSLSLAEEKEAAARWMEQQKELLTRSAADREALQGEIQNLKQERDESLLQLEHEMQQALSL 825
Cdd:pfam12128  625 EQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEE 704

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  826 KDAEKSLLSKELSGAHRELERARQEAQNQQVQA-EATVTTMTKELRTLQVQF----------EEAISTHQREADTLREKL 894
Cdd:pfam12128  705 QKEQKREARTEKQAYWQVVEGALDAQLALLKAAiAARRSGAKAELKALETWYkrdlaslgvdPDVIAKLKREIRTLERKI 784

                          570       580       590       600       610       620       630
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720355914  895 REIAAERSSVRR-----------EAEELQAQLNVAHERLAELRQELQASEESREgLQREAL----GARRALEDEVQE 956
Cdd:pfam12128  785 ERIAVRRQEVLRyfdwyqetwlqRRPRLATQLSNIERAISELQQQLARLIADTK-LRRAKLemerKASEKQQVRLSE 860
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1336-1538 8.34e-06

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 50.68  E-value: 8.34e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1336 EHLASARAAGQERRRLQEQVDTLRQALEESSRPSQSLADKGRLleQPLQQVLPHsRRDRAERRALREQTTSLRTERARLQ 1415
Cdd:COG4913    232 EHFDDLERAHEALEDAREQIELLEPIRELAERYAAARERLAEL--EYLRAALRL-WFAQRRLELLEAELEELRAELARLE 308

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1416 GELAALRTRLIQTEQETLKKEEDRAML-GAKKELLLQSLSHLHQEVDGALRQSQQLQAQMAELEQ---AHTQRLQELAAQ 1491
Cdd:COG4913    309 AELERLEARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEALLAALGLplpASAEEFAALRAE 388

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*..
gi 1720355914 1492 HQRDLAAEAQRLHEAQLQATQALEScEQIHQQRVKVLERQVASLKKR 1538
Cdd:COG4913    389 AAALLEALEEELEALEEALAEAEAA-LRDLRRELRELEAEIASLERR 434
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 943-1168 1.06e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 49.76  E-value: 1.06e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  943 ALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRD 1022
Cdd:COG4942     15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1023 TRRKLQERHRQVRTLEAENQRKRQEVSD---LQAQVSRDAQHRQKNLQESLELQRQVAEAQAAhdgVQKEVLGLRQKLAE 1099
Cdd:COG4942     95 LRAELEAQKEELAELLRALYRLGRQPPLallLSPEDFLDAVRRLQYLKYLAPARREQAEELRA---DLAELAALRAELEA 171

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720355914 1100 VEASGETRAKQLEGHLCESQRAEQTLQAELCRITRKLQEASNQADSLQRSLDNACSRVHVLEQELAKAE 1168
Cdd:COG4942    172 ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 1261-1548 1.86e-05

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 49.57  E-value: 1.86e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1261 LEAQQErdnsgiQVANLSSQLSEAERERLRLQSRVEQLQRDLADAEEG----QRRAesaLQSAQAARALQK-EALQRLET 1335
Cdd:COG3096    363 LEEQEE------VVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQAldvqQTRA---IQYQQAVQALEKaRALCGLPD 433

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1336 EHLASARAAGQERRRLQEQVDTLRQALEESSRPSQSLADKGRLLEQPLQQVLPHSRRDRAERRAlREQTTSLRTERARLQ 1415
Cdd:COG3096    434 LTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKIAGEVERSQAWQTA-RELLRRYRSQQALAQ 512

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1416 gELAALRTRLIQTEQETLKKEEDRAMLGA-------------KKELLLQSLSHLHQEVDGALRQSQQLQAQMAELEQAHT 1482
Cdd:COG3096    513 -RLQQLRAQLAELEQRLRQQQNAERLLEEfcqrigqqldaaeELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLR 591

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720355914 1483 QRLQELAAQHQRDLAAeAQRLHEAQLQATQALESCEQIHQQRVKVLER---------QVASLKKRLDKEVWQRQQ 1548
Cdd:COG3096    592 ARIKELAARAPAWLAA-QDALERLREQSGEALADSQEVTAAMQQLLERereatverdELAARKQALESQIERLSQ 665
PTZ00121 PTZ00121
MAEBL; Provisional
 829-1548 2.21e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 49.37  E-value: 2.21e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  829 EKSLLSKELSGAHRELERARQEAQNQQVQAEATVTTMTK--ELRTLQVQFEEAISTHQREADTLREKLREIAAERSSVRR 906
Cdd:PTZ00121  1085 EDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKaeDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDAR 1164

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  907 EAEELQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKaslkrsKE 986
Cdd:PTZ00121  1165 KAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAK------KD 1238

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  987 EQEQKllllqeaqvAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRtlEAENQRKRQEVSdlQAQVSRDAQHRQK-- 1064
Cdd:PTZ00121  1239 AEEAK---------KAEEERNNEEIRKFEEARMAHFARRQAAIKAEEAR--KADELKKAEEKK--KADEAKKAEEKKKad 1305

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1065 NLQESLELQRQVAEAQAAHDGVQKEVLGLRQKLAEVEASGETRAKQLEGHLCESQRAEQTLQAElcriTRKLQEASNQAD 1144
Cdd:PTZ00121  1306 EAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAA----EKKKEEAKKKAD 1381

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1145 SLQRSldnacsrvhvlEQELAKAEGARCNAEAQLGRlwstlcsgLGQSRNLLASPKRPHSPTTGSSQTRPGRQrtspptr 1224
Cdd:PTZ00121  1382 AAKKK-----------AEEKKKADEAKKKAEEDKKK--------ADELKKAAAAKKKADEAKKKAEEKKKADE------- 1435

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1225 sysparwpspvpVDPKSEVIDVAfvrdalrdlvqgllEAQQERDNSGIQVANLSSQLSEAeRERLRLQSRVEQLQRdlad 1304
Cdd:PTZ00121  1436 ------------AKKKAEEAKKA--------------DEAKKKAEEAKKAEEAKKKAEEA-KKADEAKKKAEEAKK---- 1484

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1305 AEEGQRRAESALQSAQAARALQKEALQRLETEHLASARAAgQERRRLQE--QVDTLRQALEESSRPSQSLADKGRLLEQp 1382
Cdd:PTZ00121  1485 ADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKA-DEAKKAEEakKADEAKKAEEKKKADELKKAEELKKAEE- 1562

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1383 LQQVLPHSRRDRAERRALREQTTSLRTERARLQgELAALRTRLIQTEQETLKKEED---RAMLGAKKELLLQSLSHLHQE 1459
Cdd:PTZ00121  1563 KKKAEEAKKAEEDKNMALRKAEEAKKAEEARIE-EVMKLYEEEKKMKAEEAKKAEEakiKAEELKKAEEEKKKVEQLKKK 1641

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1460 VDGALRQSQQLQAQmaelEQAHTQRLQELA--AQHQRDLAAEAQRLHEAQLQATQALESCEQihqqrvkvLERQVASLKK 1537
Cdd:PTZ00121  1642 EAEEKKKAEELKKA----EEENKIKAAEEAkkAEEDKKKAEEAKKAEEDEKKAAEALKKEAE--------EAKKAEELKK 1709

                          730
                   ....*....|.
gi 1720355914 1538 RLDKEVWQRQQ 1548
Cdd:PTZ00121  1710 KEAEEKKKAEE 1720
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1256-1491 2.31e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 48.61  E-value: 2.31e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1256 LVQGLLEAQQERDNSGIQVANLSSQLSEAERERLRLQSRVEQLQRDLADAEEGQRRAESALQSAQAARALQKEALQRLET 1335
Cdd:COG4942     11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1336 EHLASARAAGQERRRLQEQVDTLrQALEESSRP-----SQSLADKGRLLeQPLQQVLPHsrrDRAERRALREQTTSLRTE 1410
Cdd:COG4942     91 EIAELRAELEAQKEELAELLRAL-YRLGRQPPLalllsPEDFLDAVRRL-QYLKYLAPA---RREQAEELRADLAELAAL 165

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1411 RARLQGELAALRTRLIQTEQETLKKEEDRAMLGAKKELLLQSLSHLHQEVDGALRQSQQLQAQMAELEQAHTQRLQELAA 1490
Cdd:COG4942    166 RAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245


                   .
gi 1720355914 1491 Q 1491
Cdd:COG4942    246 A 246
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 399-613 2.92e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 48.22  E-value: 2.92e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  399 SLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREALSSMQLQRDILETEKESLHGALAQAESGNA 478
Cdd:COG4942     14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  479 DLELLVTRLKAEGMEQQDSLAKMA---ALLEGLSQDKGT--------LNHLALQLEQERDQLREQQKMLQQEQAGMREQL 547
Cdd:COG4942     94 ELRAELEAQKEELAELLRALYRLGrqpPLALLLSPEDFLdavrrlqyLKYLAPARREQAEELRADLAELAALRAELEAER 173

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720355914  548 TQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVTNKKQALEKQLAQS 613
Cdd:COG4942    174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
Rootletin pfam15035
Ciliary rootlet component, centrosome cohesion;
18-112 4.39e-05

Ciliary rootlet component, centrosome cohesion;


Pssm-ID: 464459 [Multi-domain]  Cd Length: 190  Bit Score: 46.19  E-value: 4.39e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914   18 SMGLSQVNTLLRQQLEHMQKANDTLARELTRATHSLVHLQRKLELQESQ----------RLSLRQPRdILPLWRQAKALQ 87
Cdd:pfam15035   87 SESLSQVNSLLREQLEQASRANEALREDLQKLTNDWERAREELEQKESEwrkeeeafneYLSSEHSR-LLSLWREVVAVR 165

                           90       100
                   ....*....|....*....|....*
gi 1720355914   88 THLAELRASTERGLTDVQADMTRTA 112
Cdd:pfam15035  166 RQFTELKTATERDLSELKTEFSRTS 190
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 765-1006 5.36e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 47.45  E-value: 5.36e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  765 LSLSLAEEKEAAARWMEQQKELLTRSAADREALQGEIQNLKQERDESLLQLEhEMQQALSLKDAEKSLLSKELSGAHREL 844
Cdd:COG4942      7 LALLLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLA-ALERRIAALARRIRALEQELAALEAEL 85

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  845 ERARQEAQNQQVQAEATVTTMTKELRTLQV---QFEEAISTHQREADTLREKLREIAAERSSVRREAEELQAQLnvahER 921
Cdd:COG4942     86 AELEKEIAELRAELEAQKEELAELLRALYRlgrQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADL----AE 161

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  922 LAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQhsnTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVA 1001
Cdd:COG4942    162 LAALRAELEAERAELEALLAELEEERAALEALKAERQKLL---ARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238


                   ....*
gi 1720355914 1002 AQKEA 1006
Cdd:COG4942    239 AAERT 243
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
508-1047 5.77e-05

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 47.73  E-value: 5.77e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  508 LSQDKGTLNHLALQLEQERDQ-LREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKqvvlLG 586
Cdd:PRK02224   182 LSDQRGSLDQLKAQIEEKEEKdLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELET----LE 257

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  587 QENAQLREQVGQVTNKKQALekqlAQSLQDQEAQMDILQEalhEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAER 666
Cdd:PRK02224   258 AEIEDLRETIAETEREREEL----AEEVRDLRERLEELEE---ERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRL 330

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  667 NSLENSLFEAQRLTTQLQTQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALER 746
Cdd:PRK02224   331 EECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNA 410

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  747 QEL--AHTEDLARLHREKDTLSLSLAEEKEA---AARWMEQQK--------------ELLTRSAADREALQGEIQNLKQE 807
Cdd:PRK02224   411 EDFleELREERDELREREAELEATLRTARERveeAEALLEAGKcpecgqpvegsphvETIEEDRERVEELEAELEDLEEE 490

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  808 RDEsllqLEHEMQQALSLKDAEK---------SLLSKELSGAHRELERARQEAQNQQVQAEATVTTMtKELRTLQVQFEE 878
Cdd:PRK02224   491 VEE----VEERLERAEDLVEAEDrierleerrEDLEELIAERRETIEEKRERAEELRERAAELEAEA-EEKREAAAEAEE 565

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  879 AISTHQREADTLREKLREIAAERSSVRREAEELQAQLNVAH--ERLAELRQELQASEESREGLQREALGARRALEDEVQE 956
Cdd:PRK02224   566 EAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDeiERLREKREALAELNDERRERLAEKRERKRELEAEFDE 645

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  957 KDVlqhsnTELRASIHRAE--QEKASLK-RSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELEraqrDTRRKLQERHRQ 1033
Cdd:PRK02224   646 ARI-----EEAREDKERAEeyLEQVEEKlDELREERDDLQAEIGAVENELEELEELRERREALE----NRVEALEALYDE 716

                          570
                   ....*....|....
gi 1720355914 1034 VRTLEAENQRKRQE 1047
Cdd:PRK02224   717 AEELESMYGDLRAE 730
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
592-1107 6.02e-05

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 47.73  E-value: 6.02e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  592 LREQVGQVTNKKQALEKQLAQSLQDQEAQMDIL---QEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAERNS 668
Cdd:PRK02224   211 LESELAELDEEIERYEEQREQARETRDEADEVLeehEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEE 290

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  669 LENSLFEAqrlttqlQTQQEQLEGKAEAAQLARRALQVEIErlksdwEVRETKLQLHLGQLqqqaaqqeqeaqlalerqe 748
Cdd:PRK02224   291 LEEERDDL-------LAEAGLDDADAEAVEARREELEDRDE------ELRDRLEECRVAAQ------------------- 338

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  749 lAHTEDLARLHREKDTLSLSLAEEKEAAARW---MEQQKELLTRSAADREALQGEIQNLKQERDESLLQLEhEMQQALSL 825
Cdd:PRK02224   339 -AHNEEAESLREDADDLEERAEELREEAAELeseLEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLG-NAEDFLEE 416

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  826 KDAEKSLLSKELSGAHRELERARQE-AQNQQVQAEATVTTMTKELRTlqvqfeeaiSTHQREADTLREKLREIAAERSSV 904
Cdd:PRK02224   417 LREERDELREREAELEATLRTARERvEEAEALLEAGKCPECGQPVEG---------SPHVETIEEDRERVEELEAELEDL 487

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  905 RREAEELQAQLNVAhERLAELRQELQASEESREGL------QREALGARR-----------ALEDEVQEKdvlQHSNTEL 967
Cdd:PRK02224   488 EEEVEEVEERLERA-EDLVEAEDRIERLEERREDLeeliaeRRETIEEKReraeelreraaELEAEAEEK---REAAAEA 563

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  968 RASIHRAEQEKASLKRSKEEQEQ------KLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAEN 1041
Cdd:PRK02224   564 EEEAEEAREEVAELNSKLAELKEriesleRIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEF 643

                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720355914 1042 QRKRQEvsdlqaqvsrDAQHRQKNLQESLE-LQRQVAEAQAAHDGVQKEVLGLRQKLAEVEASGETR 1107
Cdd:PRK02224   644 DEARIE----------EAREDKERAEEYLEqVEEKLDELREERDDLQAEIGAVENELEELEELRERR 700
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
495-678 7.39e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 47.60  E-value: 7.39e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  495 QDSLAKMAAL---LEGLSQDKGTLNHLALQLEQERDQLREQQKMLQ--QEQAGMREQLTQTGQQLGLIRAERRSLKETCG 569
Cdd:COG4913    606 FDNRAKLAALeaeLAELEEELAEAEERLEALEAELDALQERREALQrlAEYSWDEIDVASAEREIAELEAELERLDASSD 685

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  570 HLEQkqdhLEKQVVLLGQENAQLREQVGQVTNKKQALEKQLAQSLQDQEAQMDILQEALH----EKNTLSEERAQLLAKQ 645
Cdd:COG4913    686 DLAA----LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDlarlELRALLEERFAAALGD 761

                          170       180       190
                   ....*....|....*....|....*....|...
gi 1720355914  646 EALERHSELVTKEAADLRAERNSLENSLFEAQR 678
Cdd:COG4913    762 AVERELRENLEERIDALRARLNRAEEELERAMR 794
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
868-1075 8.89e-05

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 46.82  E-value: 8.89e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  868 ELRTLQVQFEEAISTHQREADTLREKLREIAAERSSVRREAEELQAQLNVAHERLAELRQELQASEESREGLQREALGAR 947
Cdd:COG4372     14 SLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQ 93

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  948 RALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKL 1027
Cdd:COG4372     94 AELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQEL 173

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*...
gi 1720355914 1028 QERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNLQESLELQRQ 1075
Cdd:COG4372    174 QALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELL 221
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
891-1439 9.27e-05

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 47.34  E-value: 9.27e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  891 REKLREIAAERSsvRREAEELQAQLNVAHERLAELRQELQASEESREGLQREALGARRALED---EVQEKDVLQHSNTEL 967
Cdd:PRK02224   186 RGSLDQLKAQIE--EKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEheeRREELETLEAEIEDL 263

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  968 RASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAyelrtrlqELERAQRDTRRKLQErhrqvrTLEAENQRKRQE 1047
Cdd:PRK02224   264 RETIAETEREREELAEEVRDLRERLEELEEERDDLLAEA--------GLDDADAEAVEARRE------ELEDRDEELRDR 329

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1048 VSDLQAQVSRDAQHRQKNLQESLELQRQVAEAQAAHDGVQKEVLGLRQKLAEVEASGETRAKQLEghlcesqraeqTLQA 1127
Cdd:PRK02224   330 LEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIE-----------ELRE 398

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1128 ELCRITRKLQEASNQADSLQRSLDNACSRVHVLEQELAKAEGARCNAEAQLGrlwSTLCSGLGQSRNllaspKRPHSPTT 1207
Cdd:PRK02224   399 RFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLE---AGKCPECGQPVE-----GSPHVETI 470

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1208 GSSQTRPGRQRTSPptrsysparwpspvpVDPKSEVIDVAFVRDALRDLVQGLLEAQQERDNSGIQVANLSSQLSEAERE 1287
Cdd:PRK02224   471 EEDRERVEELEAEL---------------EDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEK 535

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1288 RLRLQSRVEQLQRDLADAEEGQRRAESALQSAQAAR----------ALQKEALQRLET--EHLASARAAGQERRRLQEQV 1355
Cdd:PRK02224   536 RERAEELRERAAELEAEAEEKREAAAEAEEEAEEAReevaelnsklAELKERIESLERirTLLAAIADAEDEIERLREKR 615

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1356 DTLRQALEESSRPSQSLADKGRLLEQPLQQVL---PHSRRDRAER--RALREQTTSLRTERARLQGELAALRTRLiqTEQ 1430
Cdd:PRK02224   616 EALAELNDERRERLAEKRERKRELEAEFDEARieeAREDKERAEEylEQVEEKLDELREERDDLQAEIGAVENEL--EEL 693


                   ....*....
gi 1720355914 1431 ETLKKEEDR 1439
Cdd:PRK02224   694 EELRERREA 702
PLN02939 PLN02939
transferase, transferring glycosyl groups
 251-640 1.10e-04

transferase, transferring glycosyl groups


Pssm-ID: 215507 [Multi-domain]  Cd Length: 977  Bit Score: 47.20  E-value: 1.10e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  251 ARLRSPPRSVSPHQRMSPARTSSPtslHPALQAVQaaieRRQQREQELRLRLESSQEEAAGLREQLSGYRQELRTSQRLL 330
Cdd:PLN02939    15 GPIRSRAPFYLPSRRRLAVSCRAR---RRGFSSQQ----KKKRGKNIAPKQRSSNSKLQSNTDENGQLENTSLRTVMELP 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  331 QDrAQEHEDLLGQLEAQRQEAQLSQASVHLLEREKEALETTMEELRAKADIREAEtqklevtnaelrRSLLLRAEQKAEL 410
Cdd:PLN02939    88 QK-STSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDFQLEDLVGMIQNAE------------KNILLLNQARLQA 154

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  411 AQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREALSSMQLQRDILETEKESLHGALAQAESGNADLELLVTRLKAE 490
Cdd:PLN02939   155 LEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEE 234

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  491 GMEQQDSlakMAALLEGLSQDKGTLNHLALqLEQERDQLREQQKMLQQEQAGMREQLTqtgqQLGLIRAERRSLK-ETCG 569
Cdd:PLN02939   235 NMLLKDD---IQFLKAELIEVAETEERVFK-LEKERSLLDASLRELESKFIVAQEDVS----KLSPLQYDCWWEKvENLQ 306

                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720355914  570 H-LEQKQDHLEKQVVLLGQeNAQLREQVGQvtnkkqaLEKQLAQSLQDQEA--QMDILQealhEKNTLSEERAQ 640
Cdd:PLN02939   307 DlLDRATNQVEKAALVLDQ-NQDLRDKVDK-------LEASLKEANVSKFSsyKVELLQ----QKLKLLEERLQ 368
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
166-670 1.18e-04

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 46.98  E-value: 1.18e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  166 LSEQTLLVEKLSVQKEQGERAILTLKSDIQRLKSRRSGGQLAVDELRDEVESLHHVLASIKEVAqsdamcpelawsssiE 245
Cdd:PRK03918   226 LEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELK---------------E 290

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  246 VREAQARLRSPPRSVSPHQRMSPARTSSPTSLHPALQAVQAAIERRQQREQELRLRLESSQEEAAGLREqlsgyRQELRT 325
Cdd:PRK03918   291 KAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEE-----RHELYE 365

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  326 SQRLLQDRAQEHEDLLGQLEAQRQEAQLSqasvhLLEREKEALETTMEELRAKADIREAETQKLEVTNAELRRS------ 399
Cdd:PRK03918   366 EAKAKKEELERLKKRLTGLTPEKLEKELE-----ELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAkgkcpv 440

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  400 --LLLRAEQKAELAqqsERSLRELEASQGRVEQLEEKVSGLRKE-------LATSREALSSMQLQRDILETEKESLHGAL 470
Cdd:PRK03918   441 cgRELTEEHRKELL---EEYTAELKRIEKELKEIEEKERKLRKElrelekvLKKESELIKLKELAEQLKELEEKLKKYNL 517

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  471 AQAESGNADLELLVTRLKAEGMEQQdSLAKMAALLEGLSQDKGTLNHLALQLEQERDQLreqQKMLQQEQAGMREQLTQT 550
Cdd:PRK03918   518 EELEKKAEEYEKLKEKLIKLKGEIK-SLKKELEKLEELKKKLAELEKKLDELEEELAEL---LKELEELGFESVEELEER 593

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  551 GQQLGLIRAERRSLKETCGHLEQKQDHLEKqvvlLGQENAQLREQVGQVTNKKQALEKQLAQSLqdQEAQMDILQEALHE 630
Cdd:PRK03918   594 LKELEPFYNEYLELKDAEKELEREEKELKK----LEEELDKAFEELAETEKRLEELRKELEELE--KKYSEEEYEELREE 667

                          490       500       510       520
                   ....*....|....*....|....*....|....*....|
gi 1720355914  631 KNTLSEERAQLLAKQEALERHSELVTKEAADLRAERNSLE 670
Cdd:PRK03918   668 YLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEERE 707
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
523-1059 1.23e-04

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 46.98  E-value: 1.23e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  523 EQERDQLREQQKMLQQ---EQAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQkqdhLEKQVVLLGQENAQLREQVGQV 599
Cdd:PRK03918   189 ENIEELIKEKEKELEEvlrEINEISSELPELREELEKLEKEVKELEELKEEIEE----LEKELESLEGSKRKLEEKIREL 264

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  600 TNKKQALEKQLaQSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRA---ERNSLENSLFEA 676
Cdd:PRK03918   265 EERIEELKKEI-EELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEErikELEEKEERLEEL 343

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  677 QRLTTQLQTQQEQLEGKAEAAQLARrALQVEIERLKsdwevreTKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLA 756
Cdd:PRK03918   344 KKKLKELEKRLEELEERHELYEEAK-AKKEELERLK-------KRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIG 415

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  757 RLHREKDTLSLSLAEEKEAAARW--------MEQQKELLTRSAADREALQGEIQNL-KQERD--------ESLLQLEHEM 819
Cdd:PRK03918   416 ELKKEIKELKKAIEELKKAKGKCpvcgreltEEHRKELLEEYTAELKRIEKELKEIeEKERKlrkelrelEKVLKKESEL 495

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  820 QQALSLKDAEKSLLSKELSGAHRELERARQEAQNqqvqAEATVTTMTKELRTLQVQFEEaISTHQREADTLREKLREIAA 899
Cdd:PRK03918   496 IKLKELAEQLKELEEKLKKYNLEELEKKAEEYEK----LKEKLIKLKGEIKSLKKELEK-LEELKKKLAELEKKLDELEE 570

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  900 ERSSVRREAEELQ-AQLNVAHERLAELRQ------ELQASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRASIH 972
Cdd:PRK03918   571 ELAELLKELEELGfESVEELEERLKELEPfyneylELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELE 650

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  973 raEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELER------AQRDTRRKLQERHRQVRTLEAENQRKRQ 1046
Cdd:PRK03918   651 --ELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKtleklkEELEEREKAKKELEKLEKALERVEELRE 728

                          570
                   ....*....|...
gi 1720355914 1047 EVSDLQAQVSRDA 1059
Cdd:PRK03918   729 KVKKYKALLKERA 741
PRK11281 PRK11281
mechanosensitive channel MscK;
791-1078 1.32e-04

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 46.83  E-value: 1.32e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  791 AADREALQGEIQNLKQERDESLLQLEHEMQQALSLKDaekslLSKELSGAHRELERARQEAQN-QQVQAEATVTTMTK-E 868
Cdd:PRK11281    48 LNKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQ-----LKQQLAQAPAKLRQAQAELEAlKDDNDEETRETLSTlS 122

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  869 LRTLQVQFEEAISTHQreadTLREKLREIAAERSSVRREAEELQAQLNVAHERLAELRQELQASEESREGLqrealgarr 948
Cdd:PRK11281   123 LRQLESRLAQTLDQLQ----NAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKAL--------- 189

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  949 aledevqekdvlqhsntelrasihRAEQekaslkRSKEEQEQKLLllqEAQVAAQKEAYELRTRLQELERAQRD-TRRKL 1027
Cdd:PRK11281   190 ------------------------RPSQ------RVLLQAEQALL---NAQNDLQRKSLEGNTQLQDLLQKQRDyLTARI 236

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1720355914 1028 QERHRQVRTLEAENQRKRQEVSD---LQAQVSRDAQHRQKN--LQESLELQRQVAE 1078
Cdd:PRK11281   237 QRLEHQLQLLQEAINSKRLTLSEktvQEAQSQDEAARIQANplVAQELEINLQLSQ 292
PRK11281 PRK11281
mechanosensitive channel MscK;
1272-1533 1.36e-04

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 46.83  E-value: 1.36e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1272 IQVANLSSQLSEAErerlrLQSRVEQLQrDLADAEEGQRRAESALQsaQAARALQKEALQRLETEHL-ASARAAGQERRR 1350
Cdd:PRK11281    27 ARAASNGDLPTEAD-----VQAQLDALN-KQKLLEAEDKLVQQDLE--QTLALLDKIDRQKEETEQLkQQLAQAPAKLRQ 98

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1351 LQEQVDTLRQALEESSR---PSQSLADkgrlLEQPLQQVLPHSRRDRAERRALREQTTSLRTERARLQGELAALRTRLIQ 1427
Cdd:PRK11281    99 AQAELEALKDDNDEETRetlSTLSLRQ----LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQ 174

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1428 TeqetlkkeedRAMLGAKKELLLqslshlhqevdgALRQSQQ--LQAQMAELEQAHTQRLQELAA--------QHQRDLA 1497
Cdd:PRK11281   175 I----------RNLLKGGKVGGK------------ALRPSQRvlLQAEQALLNAQNDLQRKSLEGntqlqdllQKQRDYL 232

                          250       260       270
                   ....*....|....*....|....*....|....*.
gi 1720355914 1498 AEAQRLHEAQLQATQALesceqIHQQRVKVLERQVA 1533
Cdd:PRK11281   233 TARIQRLEHQLQLLQEA-----INSKRLTLSEKTVQ 263
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
901-1106 1.67e-04

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 46.16  E-value: 1.67e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  901 RSSVRREAEELQAQLNVAHERLAELRQELQASEESREGLQRE--ALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEK 978
Cdd:COG3206    163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKngLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARL 242

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  979 ASLKRSKEEQEQKLLLLQEAQVAAQkeayeLRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRD 1058
Cdd:COG3206    243 AALRAQLGSGPDALPELLQSPVIQQ-----LRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILAS 317

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*....
gi 1720355914 1059 AQHRQKNLQESL-ELQRQVAEAQAAHDGVQKEVLGLRQKLAEVEASGET 1106
Cdd:COG3206    318 LEAELEALQAREaSLQAQLAQLEARLAELPELEAELRRLEREVEVAREL 366
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 802-1148 2.12e-04

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 46.10  E-value: 2.12e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  802 QNLKQERDESLLQLEHEMQQALSLKDAEKSLLSkELSGAHRELErARQEAQNQQVQAEAtvttmtKELRTLQ--VQFEEA 879
Cdd:COG3096    277 ANERRELSERALELRRELFGARRQLAEEQYRLV-EMARELEELS-ARESDLEQDYQAAS------DHLNLVQtaLRQQEK 348

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  880 ISTHQREADTLREKLREIAAERSSVRREAEELQAQLNVAHERLAELRQELQASEESREGLQREALG---ARRALED--EV 954
Cdd:COG3096    349 IERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTRAIQyqqAVQALEKarAL 428

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  955 QEKDVLQHSNTELRASIHRAEQEkaSLKRSKEEQEQKLLLLQEAqVAAQKEAYELRT----------------------- 1011
Cdd:COG3096    429 CGLPDLTPENAEDYLAAFRAKEQ--QATEEVLELEQKLSVADAA-RRQFEKAYELVCkiageversqawqtarellrryr 505

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1012 -------RLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDlqAQVSRDAQHRQKNLQEslELQRQVAEAQAAHD 1084
Cdd:COG3096    506 sqqalaqRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDA--AEELEELLAELEAQLE--ELEEQAAEAVEQRS 581

                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1085 GVQKEVLGLRQKLAEVEASG------ETRAKQLEGHLCESQRAEQTLQAELCRITRKLQEASNQADSLQR 1148
Cdd:COG3096    582 ELRQQLEQLRARIKELAARApawlaaQDALERLREQSGEALADSQEVTAAMQQLLEREREATVERDELAA 651
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 768-980 2.41e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 45.14  E-value: 2.41e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  768 SLAEEKEAAARWMEQQKELLTRSAADREALQGEIQNLKQERDESLLQLeHEMQQALSLKDAEKSLLSKELSGAHRELERA 847
Cdd:COG4942     24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRI-RALEQELAALEAELAELEKEIAELRAELEAQ 102

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  848 RQEAQNQQVQAEATVTTMTKELRTLQVQFEEAIST----------HQREADTLREKLREIAAERSSVRREAEELQAQLNV 917
Cdd:COG4942    103 KEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRlqylkylapaRREQAEELRADLAELAALRAELEAERAELEALLAE 182

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720355914  918 AHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKAS 980
Cdd:COG4942    183 LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
mukB PRK04863
chromosome partition protein MukB;
276-615 2.42e-04

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 46.10  E-value: 2.42e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  276 SLHPALQAVQAA------IERRQQREQELRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAQRQ 349
Cdd:PRK04863   332 AASDHLNLVQTAlrqqekIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQT 411

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  350 EAQLSQASVHLLEREK----------EALETTMEELRAKAD-----IREAEtQKLEVTNAELRR-----SLLLRA----- 404
Cdd:PRK04863   412 RAIQYQQAVQALERAKqlcglpdltaDNAEDWLEEFQAKEQeateeLLSLE-QKLSVAQAAHSQfeqayQLVRKIagevs 490

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  405 -EQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREAlssMQLQRDiletekesLHGALAQAESGNADLELL 483
Cdd:PRK04863   491 rSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRA---ERLLAE--------FCKRLGKNLDDEDELEQL 559

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  484 VTRLKAEgmeqqdslakmaalLEGLSQDKGTLNHLALQLEQERDQLREQ-QKMLQQEQAGMREQ--LTQTGQQLGLIRAE 560
Cdd:PRK04863   560 QEELEAR--------------LESLSESVSEARERRMALRQQLEQLQARiQRLAARAPAWLAAQdaLARLREQSGEEFED 625

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1720355914  561 RRSLketcghLEQKQDHLEKQVvllgqenaQLREQVGQVTNKKQALEKQLAQSLQ 615
Cdd:PRK04863   626 SQDV------TEYMQQLLERER--------ELTVERDELAARKQALDEEIERLSQ 666
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
295-475 2.60e-04

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 45.78  E-value: 2.60e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  295 EQELRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQasvhlLEREKEALETTMEE 374
Cdd:COG3206    163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSE-----LESQLAEARAELAE 237

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  375 LRAKADIREAETQKLEVTNAELRRSLLLRA--EQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELAT-SREALSS 451
Cdd:COG3206    238 AEARLAALRAQLGSGPDALPELLQSPVIQQlrAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQeAQRILAS 317

                          170       180
                   ....*....|....*....|....
gi 1720355914  452 MQLQRDILETEKESLHGALAQAES 475
Cdd:COG3206    318 LEAELEALQAREASLQAQLAQLEA 341
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 911-1145 3.50e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 44.75  E-value: 3.50e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  911 LQAQLNVAHERLAELRQELQAseesregLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQ 990
Cdd:COG4942     11 LALAAAAQADAAAEAEAELEQ-------LQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEA 83

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  991 KLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRK-----------LQERHRQVRTLEAENQRKRQEVSDLQAQVSRDA 1059
Cdd:COG4942     84 ELAELEKEIAELRAELEAQKEELAELLRALYRLGRQpplalllspedFLDAVRRLQYLKYLAPARREQAEELRADLAELA 163

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1060 QHRQKNLQESLELQRQVAEAQAAHDGVQKEVLGLRQKLAEVEASGETRAKQLEghlcESQRAEQTLQAELCRITRKLQEA 1139
Cdd:COG4942    164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELA----ELQQEAEELEALIARLEAEAAAA 239


                   ....*.
gi 1720355914 1140 SNQADS 1145
Cdd:COG4942    240 AERTPA 245
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
285-466 3.59e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 45.29  E-value: 3.59e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  285 QAAIERRQQREQ-----ELRLRLESSQEEAAGLREQLSGYR-QELRTSQRLLQDRAQEHEDLLGQLEAQRQEaqlsqasv 358
Cdd:COG4913    242 EALEDAREQIELlepirELAERYAAARERLAELEYLRAALRlWFAQRRLELLEAELEELRAELARLEAELER-------- 313

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  359 hlLEREKEALETtmEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQ-------------SERSLREL-EAS 424
Cdd:COG4913    314 --LEARLDALRE--ELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLeallaalglplpaSAEEFAALrAEA 389

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 1720355914  425 QGRVEQLEEKVSGLRKELATSREALSSMQLQRDILETEKESL 466
Cdd:COG4913    390 AALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASL 431
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
 752-1531 3.84e-04

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 45.35  E-value: 3.84e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  752 TEDLARLHREKDTLSLSLAEEKEAAARWMEQQKELLTRSAADREALQGEIQNLKQERDESLLQLEHEMQQALSLKDAEKS 831
Cdd:pfam02463  182 TENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIE 261

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  832 LLSKELSGAHRELERARQEAQNQQVQAeATVTTMTKELRTLQVQFEEAISTHQREADTLREKLREIAAERSSVRREAEEL 911
Cdd:pfam02463  262 KEEEKLAQVLKENKEEEKEKKLQEEEL-KLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEEL 340

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  912 QAQLnvahERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVlqhsntELRASIHRAEQEKASLKRSKEEQEQK 991
Cdd:pfam02463  341 EKEL----KELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESE------RLSSAAKLKEEELELKSEEEKEAQLL 410

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  992 LLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLqaqvsrdaqhrQKNLQESLE 1071
Cdd:pfam02463  411 LELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKS-----------EDLLKETQL 479

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1072 LQRQVAEAQAAHDGVQKEVLGLRQKLAEVEASGETRAKQLEGhlcesqraeqtlqAELCRITRKLQEASNQADSLQRSLD 1151
Cdd:pfam02463  480 VKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVG-------------GRIISAHGRLGDLGVAVENYKVAIS 546

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1152 NACSRVHVLEQELAKAEGARCNAEAQLGRLWSTLCSGLGQSRNLLASPKRPHSPTTgssqtrpgRQRTSPPTRSYSPARW 1231
Cdd:pfam02463  547 TAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPI--------LNLAQLDKATLEADED 618

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1232 PSPVPVDPKSEVIDVAFVRDALRDLVQGLLEAQQERDNSGIQVANLSSQLSEAERERLRLQSRVEQLQRDLADAEEGQRR 1311
Cdd:pfam02463  619 DKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQ 698

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1312 AESALQSAQAARALQKEALQRLETEHLASARAAGQERRRLQEQVDTLRQALEESSRPSQSLADKGRLLEQPLQQVLphSR 1391
Cdd:pfam02463  699 LEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEK--EL 776

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1392 RDRAERRALREQTTSLRTERARLQGELAALRTRLIQTEQETLKKEEDRAMLGAKKELLLQSLSHLHQEVDGALRQSQQLQ 1471
Cdd:pfam02463  777 AEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEEL 856

                          730       740       750       760       770       780
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1472 AQMAELEQAHTQRLQELAAQHQRDLAAEAQRLHEAQLQATQALESCEQIHQQRVKVLERQ 1531
Cdd:pfam02463  857 ERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKE 916
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 234-451 4.02e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 44.75  E-value: 4.02e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  234 MCPELAWSSSIEVREAQARLRSPPRSVSPHQRMSPARTSSPTSLHPALQAVQAAIERRQQREQELRLRLESSQEEAAGLR 313
Cdd:COG4942     10 LLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELE 89

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  314 EQLSGYRQELRTSQRLLQDR------------------AQEHEDLLGQLEAQRQEAQLSQASVHLLEREKEALETTMEEL 375
Cdd:COG4942     90 KEIAELRAELEAQKEELAELlralyrlgrqpplalllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720355914  376 RAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREALSS 451
Cdd:COG4942    170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
343-539 4.04e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 45.29  E-value: 4.04e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  343 QLEAQRQEAQLSQASVHLLEREKEALETTMEELRAKadiREAETQKLEVTNAELRRslllrAEQKAELAQQSERsLRELE 422
Cdd:COG4913    611 KLAALEAELAELEEELAEAEERLEALEAELDALQER---REALQRLAEYSWDEIDV-----ASAEREIAELEAE-LERLD 681

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  423 ASQGRVEQLEEKVSGLRKELATSREALSSMQLQRDILETEKESLHGALAQAESGNADlellvtrlkAEGMEQQDSLAKMA 502
Cdd:COG4913    682 ASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEA---------AEDLARLELRALLE 752

                          170       180       190
                   ....*....|....*....|....*....|....*..
gi 1720355914  503 ALLEGLSQDKgTLNHLALQLEQERDQLREQQKMLQQE 539
Cdd:COG4913    753 ERFAAALGDA-VERELRENLEERIDALRARLNRAEEE 788
PRK09039 PRK09039
peptidoglycan -binding protein;
327-449 4.19e-04

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 44.57  E-value: 4.19e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  327 QRLLQDRAQEHEDLLGQLeaQRQEAQLSQAsVHLLEREKEALETTMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQ 406
Cdd:PRK09039    41 QFFLSREISGKDSALDRL--NSQIAELADL-LSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGR 117

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 1720355914  407 KAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREAL 449
Cdd:PRK09039   118 AGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAAL 160
mukB PRK04863
chromosome partition protein MukB;
277-551 4.19e-04

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 45.33  E-value: 4.19e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  277 LHPALQAVQAAIERRQQREQELRLRLESSQEEAAGLREQLSGYRQELRTSQ-RLLQ--------DRAQE----------- 336
Cdd:PRK04863   360 LEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQtRAIQyqqavqalERAKQlcglpdltadn 439

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  337 HEDLLGQLEAQRQEA---------QLSQASVHllereKEALETTMEELR--------------AKADIREAETQKLEVTN 393
Cdd:PRK04863   440 AEDWLEEFQAKEQEAteellsleqKLSVAQAA-----HSQFEQAYQLVRkiagevsrseawdvARELLRRLREQRHLAEQ 514

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  394 AELRRSLLLRAEQKAELAQQSERSLRELEASQGRV-----------EQLEEKVSGLRKELATSREALSSMQLQRDILETE 462
Cdd:PRK04863   515 LQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNlddedeleqlqEELEARLESLSESVSEARERRMALRQQLEQLQAR 594

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  463 KESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSqdkgtlnhlalQLEQERDQLREQQKMLQQEqag 542
Cdd:PRK04863   595 IQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERER-----------ELTVERDELAARKQALDEE--- 660


                   ....*....
gi 1720355914  543 mREQLTQTG 551
Cdd:PRK04863   661 -IERLSQPG 668
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
905-1082 4.90e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 44.76  E-value: 4.90e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  905 RREAEELQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQHsNTELRASIHRAEQEKASLKRS 984
Cdd:COG4717     80 LKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEAL-EAELAELPERLEELEERLEEL 158

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  985 KEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSR-DAQHRQ 1063
Cdd:COG4717    159 RELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQlENELEA 238

                          170
                   ....*....|....*....
gi 1720355914 1064 KNLQESLELQRQVAEAQAA 1082
Cdd:COG4717    239 AALEERLKEARLLLLIAAA 257
HEC1 COG5185
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ...
 782-1057 5.03e-04

Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444066 [Multi-domain]  Cd Length: 594  Bit Score: 44.56  E-value: 5.03e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  782 QQKELLTRSAADREALQGEIQNLKQERDESLLQLEHEmqqaLSLKDAEKSLLSKELSGAHRELERARQEA-QNQQVQAEA 860
Cdd:COG5185    272 ENAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIK----KATESLEEQLAAAEAEQELEESKRETETGiQNLTAEIEQ 347

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  861 TVTTMTKELRTLQVQFEEAISThqREADTLREKLREIAAERSSVRREAEEL-QAQLNVAHERLAELRQELQASEESREGL 939
Cdd:COG5185    348 GQESLTENLEAIKEEIENIVGE--VELSKSSEELDSFKDTIESTKESLDEIpQNQRGYAQEILATLEDTLKAADRQIEEL 425

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  940 QrealgarRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKllllqeaqvaaqKEAYELRTRLQELERA 1019
Cdd:COG5185    426 Q-------RQIEQATSSNEEVSKLLNELISELNKVMREADEESQSRLEEAYD------------EINRSVRSKKEDLNEE 486

                          250       260       270
                   ....*....|....*....|....*....|....*...
gi 1720355914 1020 QRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSR 1057
Cdd:COG5185    487 LTQIESRVSTLKATLEKLRAKLERQLEGVRSKLDQVAE 524
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 893-1048 6.34e-04

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 42.99  E-value: 6.34e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  893 KLREIAAERSSVRREAEELQAQLNVAHERLAELRQELQASEESREGLQREaLGARRALEDEVQEKDVLQHSNTELRAsih 972
Cdd:COG1579     18 ELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELE-IEEVEARIKKYEEQLGNVRNNKEYEA--- 93

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720355914  973 rAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEV 1048
Cdd:COG1579     94 -LQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREEL 168
COG1340 COG1340
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
794-991 7.28e-04

Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];


Pssm-ID: 440951 [Multi-domain]  Cd Length: 297  Bit Score: 43.36  E-value: 7.28e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  794 REALQGEIQNLKQERDESLLQLEHEMQQALSLKD--AEKSLLSKELSGAHRELERARQEAQNQQVQAE------ATVTTM 865
Cdd:COG1340     66 RDELNEKVKELKEERDELNEKLNELREELDELRKelAELNKAGGSIDKLRKEIERLEWRQQTEVLSPEeekelvEKIKEL 145

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  866 TKELRTLQVQFEEaisthQREADTLREKLREIAAERSSVRREAEELQAQLNVAHERLAELRQELQASEESREGLQREALG 945
Cdd:COG1340    146 EKELEKAKKALEK-----NEKLKELRAELKELRKEAEEIHKKIKELAEEAQELHEEMIELYKEADELRKEADELHKEIVE 220

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*.
gi 1720355914  946 ARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQK 991
Cdd:COG1340    221 AQEKADELHEEIIELQKELRELRKELKKLRKKQRALKREKEKEELE 266
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
612-1135 7.30e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 44.52  E-value: 7.30e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  612 QSLQDQEAQMDILQEALHEKNTLSEERAQLlAKQEALERHSELVT--KEAADLRAERNSLENSLFEAQRLTTQLQTQQEQ 689
Cdd:COG4913    242 EALEDAREQIELLEPIRELAERYAAARERL-AELEYLRAALRLWFaqRRLELLEAELEELRAELARLEAELERLEARLDA 320

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  690 LEGKAEAAQLARRALQVE-IERLKsdwevRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHREKDTLSLS 768
Cdd:COG4913    321 LREELDELEAQIRGNGGDrLEQLE-----REIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEA 395

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  769 LAEEKEAAARWMEQQKELLTRSAADREALQGEIQNLKQER---DESLLQLEHEMQQALSLKDAEKSLLSK--ELSGAHRE 843
Cdd:COG4913    396 LEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKsniPARLLALRDALAEALGLDEAELPFVGEliEVRPEEER 475

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  844 LERARQ-------------EAQNQQVQAEATVTTMTKELRTLQVQ-FEEAISTHQREADTLREKLreiAAERSSVRREAE 909
Cdd:COG4913    476 WRGAIErvlggfaltllvpPEHYAAALRWVNRLHLRGRLVYERVRtGLPDPERPRLDPDSLAGKL---DFKPHPFRAWLE 552

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  910 ELQAQLNVAH--ERLAELRQELQASeeSREGlQREALGARRALEDE--VQEKDVLQHSNT-----------ELRASIHRA 974
Cdd:COG4913    553 AELGRRFDYVcvDSPEELRRHPRAI--TRAG-QVKGNGTRHEKDDRrrIRSRYVLGFDNRaklaaleaelaELEEELAEA 629

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  975 EQEKASLKRSKEEQEQKLLLLQEAQV---------AAQKEAYELRTRLQELERAQRDtrrkLQERHRQVRTLEAENQRKR 1045
Cdd:COG4913    630 EERLEALEAELDALQERREALQRLAEyswdeidvaSAEREIAELEAELERLDASSDD----LAALEEQLEELEAELEELE 705

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1046 QEVSDLQAQVSRDAQHRQKNLQESLELQRQVAEAQAAHDGVQKEVLGLRQKLAEVEASGETRAKQLEGHLCESQRAEQTL 1125
Cdd:COG4913    706 EELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRA 785

                          570
                   ....*....|
gi 1720355914 1126 QAELCRITRK 1135
Cdd:COG4913    786 EEELERAMRA 795
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
281-534 9.11e-04

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 43.35  E-value: 9.11e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  281 LQAVQAAIERRQQREQELRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVHL 360
Cdd:COG4372     68 LEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAE 147

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  361 LEREKEALETTMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRK 440
Cdd:COG4372    148 REEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSL 227

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  441 ELATSREALSSMQLQRDILETEKESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLAL 520
Cdd:COG4372    228 EAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAAL 307

                          250
                   ....*....|....
gi 1720355914  521 QLEQERDQLREQQK 534
Cdd:COG4372    308 SLIGALEDALLAAL 321
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 1252-1550 9.13e-04

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 44.17  E-value: 9.13e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1252 ALRDLVQGLLEAQQ------------ERDNSGIQVANLSSQLSEAERERLRLQSRVEQLQRDLADAEEGQRRAESALQSA 1319
Cdd:COG3096    253 SDRDLFKHLITEATnyvaadymrhanERRELSERALELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAA 332

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1320 qaaralqkealqrleTEHLASARAAgqerRRLQEQVDTLRQALEESSRpsqsladkgRLLEQPLQQVLPHSRRDRAERRA 1399
Cdd:COG3096    333 ---------------SDHLNLVQTA----LRQQEKIERYQEDLEELTE---------RLEEQEEVVEEAAEQLAEAEARL 384

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1400 LR--EQTTSLRTERARLQGELAALRTRLIQTEQETLKKEEDRAMLGAkkelllqslshLHQEVDGALRQSQQLQAQmael 1477
Cdd:COG3096    385 EAaeEEVDSLKSQLADYQQALDVQQTRAIQYQQAVQALEKARALCGL-----------PDLTPENAEDYLAAFRAK---- 449

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1478 EQAHTQRLqeLAAQHQRDLAAEAQRLHEAQLQATQAL------------------ESCEQIHQ-QRVKVLERQVASLKKR 1538
Cdd:COG3096    450 EQQATEEV--LELEQKLSVADAARRQFEKAYELVCKIageversqawqtarellrRYRSQQALaQRLQQLRAQLAELEQR 527

                          330
                   ....*....|..
gi 1720355914 1539 LdkevwQRQQQA 1550
Cdd:COG3096    528 L-----RQQQNA 534
PRK10929 PRK10929
putative mechanosensitive channel protein; Provisional
 514-662 9.97e-04

putative mechanosensitive channel protein; Provisional


Pssm-ID: 236798 [Multi-domain]  Cd Length: 1109  Bit Score: 43.89  E-value: 9.97e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  514 TLNHLALQLEQERDQLREQQKMLQQEQAGMRE---QLTQTGQQLGLIR-----AERR--SLKETCGHLEQkqdhleKQVV 583
Cdd:PRK10929   103 STDALEQEILQVSSQLLEKSRQAQQEQDRAREisdSLSQLPQQQTEARrqlneIERRlqTLGTPNTPLAQ------AQLT 176

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  584 LLGQENAQLREQVGQV------TNKKQALEKQLAQSLQDQEAQMDILQEALheKNTLSEERAQllAKQEALErHSELVTK 657
Cdd:PRK10929   177 ALQAESAALKALVDELelaqlsANNRQELARLRSELAKKRSQQLDAYLQAL--RNQLNSQRQR--EAERALE-STELLAE 251


                   ....*
gi 1720355914  658 EAADL 662
Cdd:PRK10929   252 QSGDL 256
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 870-1176 1.10e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 43.57  E-value: 1.10e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  870 RTLQVQFE--EAISTHQREADTLREKLREIAAERSSVRREAE-ELQAQLNVAHERLA--------ELRQELQASEESREG 938
Cdd:pfam17380  287 RQQQEKFEkmEQERLRQEKEEKAREVERRRKLEEAEKARQAEmDRQAAIYAEQERMAmerereleRIRQEERKRELERIR 366

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  939 LQREALGARRALEDEVQEKDvLQHSNTELRASIHRAEQEKAsLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELER 1018
Cdd:pfam17380  367 QEEIAMEISRMRELERLQME-RQQKNERVRQELEAARKVKI-LEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEER 444

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1019 AQRDTRRKLQERHRQ-----VRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNLQESLELQRQ-VAEAQAAHDGVQKEVLG 1092
Cdd:pfam17380  445 AREMERVRLEEQERQqqverLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQaMIEEERKRKLLEKEMEE 524

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1093 LRQKLAEVEasgetrakqlEGHLCESQRAEQTLQAELCRITRKLQEASNqadslQRSLDNACSRVHVLEQELAKAEGARC 1172
Cdd:pfam17380  525 RQKAIYEEE----------RRREAEEERRKQQEMEERRRIQEQMRKATE-----ERSRLEAMEREREMMRQIVESEKARA 589


                   ....
gi 1720355914 1173 NAEA 1176
Cdd:pfam17380  590 EYEA 593
PRK11281 PRK11281
mechanosensitive channel MscK;
276-446 1.12e-03

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 43.75  E-value: 1.12e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  276 SLHPALQAVQAAIERRQQREQELRLRLESSQEEAAGLR--------------EQLSGYRQELRTSQRLLQDRAQEHEDLL 341
Cdd:PRK11281   153 SLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRpsqrvllqaeqallNAQNDLQRKSLEGNTQLQDLLQKQRDYL 232

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  342 gQLEAQRQEAQLSQASVHLLEREKEALETTMEELRAKADIREAETQKLEVTNAELRRSL---LLRAEQKA-ELAQQSERS 417
Cdd:PRK11281   233 -TARIQRLEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLsqrLLKATEKLnTLTQQNLRV 311

                          170       180
                   ....*....|....*....|....*....
gi 1720355914  418 LRELEASQGRVEQLEEKVSGLRKELATSR 446
Cdd:PRK11281   312 KNWLDRLTQSERNIKEQISVLKGSLLLSR 340
RecN COG0497
DNA repair ATPase RecN [Replication, recombination and repair];
280-450 1.18e-03

DNA repair ATPase RecN [Replication, recombination and repair];


Pssm-ID: 440263 [Multi-domain]  Cd Length: 555  Bit Score: 43.53  E-value: 1.18e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  280 ALQAVQAAIERRQQREQELRLRLESSQE-----EAAGLR----EQLSGYRQELRTSQRLLQDRAQEHE----------DL 340
Cdd:COG0497    166 AWRALKKELEELRADEAERARELDLLRFqleelEAAALQpgeeEELEEERRRLSNAEKLREALQEALEalsggeggalDL 245

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  341 LGQL-----EAQRQEAQLSQASvHLLEREKEALETTMEELRAKADIREAETQKLEVTNAelRRSLLLRAEQK-------- 407
Cdd:COG0497    246 LGQAlraleRLAEYDPSLAELA-ERLESALIELEEAASELRRYLDSLEFDPERLEEVEE--RLALLRRLARKygvtveel 322

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|...
gi 1720355914  408 AELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREALS 450
Cdd:COG0497    323 LAYAEELRAELAELENSDERLEELEAELAEAEAELLEAAEKLS 365
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 277-474 1.25e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 43.57  E-value: 1.25e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  277 LHPALQAVQAAIERR-----------QQREQEL-RLRLESSQEEAAGLR-EQLSGYRQELRTSQRLLQDRAQEHEDLLGQ 343
Cdd:pfam17380  318 LEEAEKARQAEMDRQaaiyaeqermaMERERELeRIRQEERKRELERIRqEEIAMEISRMRELERLQMERQQKNERVRQE 397

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  344 LEAQRQEAQLSQasvhllEREKEALETTMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERsLRELEA 423
Cdd:pfam17380  398 LEAARKVKILEE------ERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVER-LRQQEE 470

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720355914  424 SQGR------------VEQLEEKVSGLRKELATSREALSSMQLQRDILETEKESLHGALAQAE 474
Cdd:pfam17380  471 ERKRkklelekekrdrKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEE 533
PRK12704 PRK12704
phosphodiesterase; Provisional
 825-1009 1.40e-03

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 43.23  E-value: 1.40e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  825 LKDAEKSL--LSKElsgahRELErARQEAQNQQVQAEATVTTMTKELRTLQVQFEEAISTHQREADTLREKLREIAAERS 902
Cdd:PRK12704    44 LEEAKKEAeaIKKE-----ALLE-AKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEK 117

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  903 SVRREAEELQAQLNVAHERLAELRQELqaseESREGLQREAlgARRALEDEVQEKdvlqhsntelrasihrAEQEKASLK 982
Cdd:PRK12704   118 ELEQKQQELEKKEEELEELIEEQLQEL----ERISGLTAEE--AKEILLEKVEEE----------------ARHEAAVLI 175

                          170       180
                   ....*....|....*....|....*..
gi 1720355914  983 RSKEEqeqkllllqEAQVAAQKEAYEL 1009
Cdd:PRK12704   176 KEIEE---------EAKEEADKKAKEI 193
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
 323-553 1.42e-03

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 462303 [Multi-domain]  Cd Length: 488  Bit Score: 42.96  E-value: 1.42e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  323 LRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASvhlLEREKEALETTMEELRAKADIREAETQKLEVTNAELRRSLLL 402
Cdd:pfam07888   36 LEECLQERAELLQAQEAANRQREKEKERYKRDREQ---WERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEE 112

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  403 RAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREALSSMQLQRDILETEKESLHGALAQAESGNADLEL 482
Cdd:pfam07888  113 LSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSK 192

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720355914  483 LVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQLEQERDQLREQQKML---QQEQAGMREQLTQTGQQ 553
Cdd:pfam07888  193 EFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLnasERKVEGLGEELSSMAAQ 266
PRK10929 PRK10929
putative mechanosensitive channel protein; Provisional
 1296-1514 1.46e-03

putative mechanosensitive channel protein; Provisional


Pssm-ID: 236798 [Multi-domain]  Cd Length: 1109  Bit Score: 43.50  E-value: 1.46e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1296 EQLQRDLADAEEGQRRAESALQSAQAARALQKEALQrLETEHLASARAAGQERRRLQEQVDTL----------RQALEES 1365
Cdd:PRK10929    78 PKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQ-VSSQLLEKSRQAQQEQDRAREISDSLsqlpqqqteaRRQLNEI 156

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1366 SRPSQSLADKGRLLEQP---LQQVLPHSRRDRAERRALREQTTSLRTERARLQGELAALRTRLIQTEQETLkkeedRAML 1442
Cdd:PRK10929   157 ERRLQTLGTPNTPLAQAqltALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQAL-----RNQL 231

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1443 GAKKElllqslshlhQEVDGALRQSQQLQAQMAELEQAHTQRLQ-------ELAAQHQR-DLAAEAQRLHEAQ-LQATQA 1513
Cdd:PRK10929   232 NSQRQ----------REAERALESTELLAEQSGDLPKSIVAQFKinrelsqALNQQAQRmDLIASQQRQAASQtLQVRQA 301


                   .
gi 1720355914 1514 L 1514
Cdd:PRK10929   302 L 302
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 891-1178 1.62e-03

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 43.40  E-value: 1.62e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  891 REKLREIAAERssvRREAEELQAQLNVAHERLAELRQELQASEESREGLQREALGAR---RALEDEVQEKDVLQHSNTEL 967
Cdd:COG3096    280 RRELSERALEL---RRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASdhlNLVQTALRQQEKIERYQEDL 356

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  968 RASIHRAEQEKASLKRSKEEQEQklllLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEaeNQRKRQE 1047
Cdd:COG3096    357 EELTERLEEQEEVVEEAAEQLAE----AEARLEAAEEEVDSLKSQLADYQQALDVQQTRAIQYQQAVQALE--KARALCG 430

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1048 VSDLQAQVSRDAQHRQKNLQES-----LELQRQVAEAQAAHDGVQKEVLGLRQKLAEVEAS-GETRAKQL------EGHL 1115
Cdd:COG3096    431 LPDLTPENAEDYLAAFRAKEQQateevLELEQKLSVADAARRQFEKAYELVCKIAGEVERSqAWQTARELlrryrsQQAL 510

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720355914 1116 CESQRAEQTLQAELCRITRKLQEASNQADSLQRSLDNACSRVHVLEQELAKAEGARCNAEAQL 1178
Cdd:COG3096    511 AQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQA 573
PRK10929 PRK10929
putative mechanosensitive channel protein; Provisional
 282-536 1.73e-03

putative mechanosensitive channel protein; Provisional


Pssm-ID: 236798 [Multi-domain]  Cd Length: 1109  Bit Score: 43.12  E-value: 1.73e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  282 QAVQAAIERRQQREQELRLRLESSQEEAAGLREQLSG---YRQELRTSQRLL---------QDRAQEHEDLLGQLEAQRQ 349
Cdd:PRK10929    68 KQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTdalEQEILQVSSQLLeksrqaqqeQDRAREISDSLSQLPQQQT 147

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  350 EAQ-------------------LSQASVHLLEREKEALETTMEEL--------------RAKADIREAETQKLEVTNAEL 396
Cdd:PRK10929   148 EARrqlneierrlqtlgtpntpLAQAQLTALQAESAALKALVDELelaqlsannrqelaRLRSELAKKRSQQLDAYLQAL 227

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  397 RRSLLLRAEQKAELAQQSERSLRELEAS--QGRVEQLE--EKVSGLRKELATSREALSSMQLQ--------RDILETEKE 464
Cdd:PRK10929   228 RNQLNSQRQREAERALESTELLAEQSGDlpKSIVAQFKinRELSQALNQQAQRMDLIASQQRQaasqtlqvRQALNTLRE 307

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  465 S---LHGALAQAESGNADL-----------------ELLVTRLKAEGM-EQQDSLAKmaallegLSQDKGTlnhlALQLE 523
Cdd:PRK10929   308 QsqwLGVSNALGEALRAQVarlpempkpqqldtemaQLRVQRLRYEDLlNKQPQLRQ-------IRQADGQ----PLTAE 376

                          330
                   ....*....|....*.
gi 1720355914  524 QER---DQLREQQKML 536
Cdd:PRK10929   377 QNRildAQLRTQRELL 392
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 519-721 2.19e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 42.06  E-value: 2.19e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  519 ALQLEQERDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQ 598
Cdd:COG4942     15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  599 VTNKKQALEKQLAQSLQDQEAQMD-------------------------ILQEALHEKNTLSEERAQLLAKQEALERHSE 653
Cdd:COG4942     95 LRAELEAQKEELAELLRALYRLGRqpplalllspedfldavrrlqylkyLAPARREQAEELRADLAELAALRAELEAERA 174

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720355914  654 LVTKEAADLRAERNSLENSLFEAQRLTTQLQTQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRETK 721
Cdd:COG4942    175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
MutS2 COG1193
dsDNA-specific endonuclease/ATPase MutS2 [Replication, recombination and repair];
781-910 2.24e-03

dsDNA-specific endonuclease/ATPase MutS2 [Replication, recombination and repair];


Pssm-ID: 440806 [Multi-domain]  Cd Length: 784  Bit Score: 42.82  E-value: 2.24e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  781 EQQKELLTRSAADREALQGEIQNLKQERDESLLQLEHEMQQALSLKDAEKSLLSKELSGAHRELERARQEAQNQQVQAEA 860
Cdd:COG1193    503 ERARELLGEESIDVEKLIEELERERRELEEEREEAERLREELEKLREELEEKLEELEEEKEEILEKAREEAEEILREARK 582

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 1720355914  861 TVTTMTKELRTLQVQFEEAISTHQReadtLREKLREIAAERSSVRREAEE 910
Cdd:COG1193    583 EAEELIRELREAQAEEEELKEARKK----LEELKQELEEKLEKPKKKAKP 628
Macoilin pfam09726
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 ...
 281-460 2.32e-03

Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 trasnmembrane helices, followed by a C-terminal coiled-coil region. Macoilin is a highly conserved protein present in eukaryotes. Macoilin appears to be found in the ER and be involved in the function of neurons.


Pssm-ID: 462859 [Multi-domain]  Cd Length: 670  Bit Score: 42.53  E-value: 2.32e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  281 LQAVQAAIERRQQREQELRLRLESSQEEAAGLREQLSGYRQE---LRTS-QRLLQDRAQEHEDlLGQLEAQRQEAQLSQA 356
Cdd:pfam09726  404 IKKLKAELQASRQTEQELRSQISSLTSLERSLKSELGQLRQEndlLQTKlHNAVSAKQKDKQT-VQQLEKRLKAEQEARA 482

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  357 SVH-LLEREKEAleTTMEELRAKADIREAETQKLEVTNAELRRslllraeqKAELAQQSERSLRELEASQGRVEQLEEKV 435
Cdd:pfam09726  483 SAEkQLAEEKKR--KKEEEATAARAVALAAASRGECTESLKQR--------KRELESEIKKLTHDIKLKEEQIRELEIKV 552

                          170       180       190
                   ....*....|....*....|....*....|.
gi 1720355914  436 SGLR------KELATSREALSSMQLQRDILE 460
Cdd:pfam09726  553 QELRkykeseKDTEVLMSALSAMQDKNQHLE 583
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
 405-1071 2.55e-03

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 42.65  E-value: 2.55e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  405 EQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREALSSMQLQRDILETEKESLHGAL--------AQAESG 476
Cdd:TIGR00618  191 SLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLkkqqllkqLRARIE 270

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  477 NADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQLeQERDQLREQQKMLQQEQAGMREQLTQTGQQLGL 556
Cdd:TIGR00618  271 ELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTEL-QSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQT 349

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  557 IRAERRSLKETCGHLEQKQDHLEKQVVLLgQENAQLREQVGQVTNKKQALEKQLAQSLQDQEAQMDILQEALHEKNTLSE 636
Cdd:TIGR00618  350 LHSQEIHIRDAHEVATSIREISCQQHTLT-QHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAH 428

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  637 ERAQLLAKQEALERHSELVTKEAADLRAERNslenslfEAQRLTTQLQTQQEQLEGKAEAAQLARRALQVEIERLKsdwE 716
Cdd:TIGR00618  429 AKKQQELQQRYAELCAAAITCTAQCEKLEKI-------HLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLL---E 498

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  717 VRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHREKDTLSLSLAEEKEAAARWMEQQKEL---LTRSAAD 793
Cdd:TIGR00618  499 LQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIqqsFSILTQC 578

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  794 REALQGEIQNLKQERDESLLQLEHEMQQALSLKDAEKSLLSKELSGAHRELERARQEAQNQQVQAEATVTTMTKELRTLQ 873
Cdd:TIGR00618  579 DNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQE 658

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  874 VQFEEAISTHQREADTLREKLREIAAERSsvrrEAEELQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEDE 953
Cdd:TIGR00618  659 RVREHALSIRVLPKELLASRQLALQKMQS----EKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDL 734

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  954 VQEKDVLQHSNTELRasihraEQEKASLKRSKEEQEQKLLllqeaqvaAQKEAYELRTRLQELERAQRDTRRKLQERHRQ 1033
Cdd:TIGR00618  735 AAREDALNQSLKELM------HQARTVLKARTEAHFNNNE--------EVTAALQTGAELSHLAAEIQFFNRLREEDTHL 800

                          650       660       670
                   ....*....|....*....|....*....|....*...
gi 1720355914 1034 VRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNLQESLE 1071
Cdd:TIGR00618  801 LKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLE 838
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
404-596 2.57e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 42.59  E-value: 2.57e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  404 AEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREALSSMQLQRDILETEKE--SLHGALAQAESGNADLE 481
Cdd:COG4913    609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREiaELEAELERLDASSDDLA 688

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  482 LLvtrlkaegmeqQDSLAKMAALLEGLSQDKGTLNHLALQLEQERDQLREQQKMLQQEQAGMrEQLTQTGQQLGLirAER 561
Cdd:COG4913    689 AL-----------EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAA-EDLARLELRALL--EER 754

                          170       180       190
                   ....*....|....*....|....*....|....*
gi 1720355914  562 RSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQV 596
Cdd:COG4913    755 FAAALGDAVERELRENLEERIDALRARLNRAEEEL 789
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 705-1127 2.82e-03

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 42.41  E-value: 2.82e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  705 QVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHREKDTLSLSLAEEKEAAARWMEQQK 784
Cdd:pfam15921  266 QDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIE 345

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  785 EL----------LTRSAADREALQGEIQNLKQERDESLLQLeHEMQQALSLKDAEKSLLSKELSGAHRELERARQEA--Q 852
Cdd:pfam15921  346 ELekqlvlanseLTEARTERDQFSQESGNLDDQLQKLLADL-HKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELddR 424

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  853 NQQVQA-EATVTTMTKELrtlQVQFEEAISTHQREADTLrEKLREIAAERSS----VRREAEELQAQ---LNVAHERLAE 924
Cdd:pfam15921  425 NMEVQRlEALLKAMKSEC---QGQMERQMAAIQGKNESL-EKVSSLTAQLEStkemLRKVVEELTAKkmtLESSERTVSD 500

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  925 LRQELQASEESREGLQREALGARRALEDEVQE-------KDVLQHSNTELRA-SIHRAEQEKASLKRSKEEQEQKLLLLQ 996
Cdd:pfam15921  501 LTASLQEKERAIEATNAEITKLRSRVDLKLQElqhlkneGDHLRNVQTECEAlKLQMAEKDKVIEILRQQIENMTQLVGQ 580

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  997 EAQVAA---------QKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNLQ 1067
Cdd:pfam15921  581 HGRTAGamqvekaqlEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLN 660

                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1068 ESLELQRQVAEAQAAHDGVQKEvlgLRQKLAEVEASGETRAKQLEGHLCESQRAEQTLQA 1127
Cdd:pfam15921  661 EVKTSRNELNSLSEDYEVLKRN---FRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKS 717
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
 281-1150 3.11e-03

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 460256 [Multi-domain]  Cd Length: 1081  Bit Score: 42.47  E-value: 3.11e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  281 LQAVQAAIERRQQREQELRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVHL 360
Cdd:pfam01576  245 LQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSK 324

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  361 LEREKEALETTMEElrakadireaETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQgrvEQLEEKVSGLRK 440
Cdd:pfam01576  325 REQEVTELKKALEE----------ETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAK---QALESENAELQA 391

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  441 ELATSREALSSMQLQRDILETEKESLHGALAQAESGNADLELLVTRLKAEgmeqqdslakMAALLEGLSQDKGTLNHLAL 520
Cdd:pfam01576  392 ELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSE----------LESVSSLLNEAEGKNIKLSK 461

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  521 QLEQERDQLREQQKMLQQEQagmrEQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVT 600
Cdd:pfam01576  462 DVSSLESQLQDTQELLQEET----RQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDA 537

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  601 NKKQALEKQLAQSLQDQEAQMDILQEALhekntlseeraqllAKQEALERHSELVTKEAADLRAERNSlenslfeaQRLT 680
Cdd:pfam01576  538 GTLEALEEGKKRLQRELEALTQQLEEKA--------------AAYDKLEKTKNRLQQELDDLLVDLDH--------QRQL 595

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  681 TQLQTQQEQLEGKAEAAQLARRALQVEiERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARlhr 760
Cdd:pfam01576  596 VSNLEKKQKKFDQMLAEEKAISARYAE-ERDRAEAEAREKETRALSLARALEEALEAKEELERTNKQLRAEMEDLVS--- 671

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  761 EKDTLSLSlAEEKEAAARWMEQQKELLTRSAADREALQGEIQNLKQERDESLLQLEHEMQQALSLKDAEKSLLSKELSGA 840
Cdd:pfam01576  672 SKDDVGKN-VHELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNMQALKAQFERDLQARDEQGEEKRRQLVKQ 750

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  841 HRELERARQEAQNQQVQAEATVTTMTKELRTLQVQFEEAIsthqREADTLREKLREIAAERSSVRREAEELQAQLNVAHE 920
Cdd:pfam01576  751 VRELEAELEDERKQRAQAVAAKKKLELDLKELEAQIDAAN----KGREEAVKQLKKLQAQMKDLQRELEEARASRDEILA 826

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  921 RLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQH-------SNTELRASIHRAEQEKASLKRSKEEQEQKLL 993
Cdd:pfam01576  827 QSKESEKKLKNLEAELLQLQEDLAASERARRQAQQERDELADeiasgasGKSALQDEKRRLEARIAQLEEELEEEQSNTE 906

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  994 LLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNLQESLELQ 1073
Cdd:pfam01576  907 LLNDRLRKSTLQVEQLTTELAAERSTSQKSESARQQLERQNKELKAKLQEMEGTVKSKFKSSIAALEAKIAQLEEQLEQE 986

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1074 RQvaEAQAAHDGVQKEVLGLRQKLAEVE-------------ASGETRAKQLEGHLCESQRAEQTLQAELCRITRKLQEAS 1140
Cdd:pfam01576  987 SR--ERQAANKLVRRTEKKLKEVLLQVEderrhadqykdqaEKGNSRMKQLKRQLEEAEEEASRANAARRKLQRELDDAT 1064

                          890
                   ....*....|
gi 1720355914 1141 NQADSLQRSL 1150
Cdd:pfam01576 1065 ESNESMNREV 1074
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
 282-1049 3.23e-03

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 42.34  E-value: 3.23e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  282 QAVQAAIERRQQREQELRLrLESSQEEAAGLREQLSGYRQELRTSQRLlqdrAQEHEDLLGQLEAQRQEAQLSQASVHLL 361
Cdd:TIGR00606  193 QVRQTQGQKVQEHQMELKY-LKQYKEKACEIRDQITSKEAQLESSREI----VKSYENELDPLKNRLKEIEHNLSKIMKL 267

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  362 EREKEALETTmeELRAKADIREAETQKLEVTNAElrrslllrAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKE 441
Cdd:TIGR00606  268 DNEIKALKSR--KKQMEKDNSELELKMEKVFQGT--------DEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRL 337

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  442 LATSREALssmqlqrdILETEKESLHGALAQAESGNADLELLVTRLKAEgmeqqdslakmaalLEGLSQDKGTLNHLALQ 521
Cdd:TIGR00606  338 LNQEKTEL--------LVEQGRLQLQADRHQEHIRARDSLIQSLATRLE--------------LDGFERGPFSERQIKNF 395

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  522 LEQERDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKETcghLEQKQDHLEKQVVLLGQENAQLREQVG---Q 598
Cdd:TIGR00606  396 HTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRT---IELKKEILEKKQEELKFVIKELQQLEGssdR 472

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  599 VTNKKQALEKQLAQ-SLQDQEAQMDILqeaLHEKNTLSEERAQLLAKQEALErhselvtKEAADLRAERNSLENSLFEAQ 677
Cdd:TIGR00606  473 ILELDQELRKAERElSKAEKNSLTETL---KKEVKSLQNEKADLDRKLRKLD-------QEMEQLNHHTTTRTQMEMLTK 542

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  678 RLTTQLQTQQEQLEGKAEaaQLARRALQVEIERLKSDW---EVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTED 754
Cdd:TIGR00606  543 DKMDKDEQIRKIKSRHSD--ELTSLLGYFPNKKQLEDWlhsKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQ 620

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  755 LARLHREKDTLSLSLAEEKEaaarwMEQQKELLTRSAADREALQGEI----QNLKQERDES---------LLQLEHEMQQ 821
Cdd:TIGR00606  621 LSSYEDKLFDVCGSQDEESD-----LERLKEEIEKSSKQRAMLAGATavysQFITQLTDENqsccpvcqrVFQTEAELQE 695

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  822 ALSLKDAEKSLLSKELSGAHRELERARQEAQNQQVQAEATVTTM---TKELRTLQVQFEEAISTHQREADTLREK---LR 895
Cdd:TIGR00606  696 FISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIdlkEKEIPELRNKLQKVNRDIQRLKNDIEEQetlLG 775

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  896 EIAAERSSVR------REAEELQAQLNVAHERLAELRQELQASEesregLQREALGARRALEDEVQEKDVLQHSNTELRA 969
Cdd:TIGR00606  776 TIMPEEESAKvcltdvTIMERFQMELKDVERKIAQQAAKLQGSD-----LDRTVQQVNQEKQEKQHELDTVVSKIELNRK 850

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  970 SIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVS 1049
Cdd:TIGR00606  851 LIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELIS 930
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
280-532 3.28e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 42.21  E-value: 3.28e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  280 ALQAVQAAIERRQQREQEL------RLRLESSQEEAAGLREQLsgyrQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQL 353
Cdd:COG4913    635 ALEAELDALQERREALQRLaeyswdEIDVASAEREIAELEAEL----ERLDASSDDLAALEEQLEELEAELEELEEELDE 710

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  354 SQASVHLLEREKEALETTMEELRAKADIREAETQKLEVTNAELRRslllraeqKAELAQQSERSLReleasqgrvEQLEE 433
Cdd:COG4913    711 LKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERF--------AAALGDAVERELR---------ENLEE 773

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  434 KVSGLRKELATSREALssMQLQRDILETEKESLHGALAQAESGNADLELLvTRLKAEGMEQQdsLAKMAALLEGLSQDKg 513
Cdd:COG4913    774 RIDALRARLNRAEEEL--ERAMRAFNREWPAETADLDADLESLPEYLALL-DRLEEDGLPEY--EERFKELLNENSIEF- 847

                          250
                   ....*....|....*....
gi 1720355914  514 tLNHLALQLEQERDQLREQ 532
Cdd:COG4913    848 -VADLLSKLRRAIREIKER 865
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
760-1171 3.32e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 42.06  E-value: 3.32e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  760 REKDTLSLSLAEEKEAAARWMEQQKELLtRSAADREALQGEIQNLKQERDESLLQLEHEMQ----QALSLKDAEKSLLSK 835
Cdd:COG4717     71 KELKELEEELKEAEEKEEEYAELQEELE-ELEEELEELEAELEELREELEKLEKLLQLLPLyqelEALEAELAELPERLE 149

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  836 ELSGAHRELERARQEAQNQQVQAEATVTTMTKELRTLQVQFEEAISTHQREADTLREKLREIAAERSSVRREAEELQAQL 915
Cdd:COG4717    150 ELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEEL 229

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  916 NVAHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDV-------LQHSNTELRASIHRAEQEKASLKRSKEEQ 988
Cdd:COG4717    230 EQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILtiagvlfLVLGLLALLFLLLAREKASLGKEAEELQA 309

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  989 EQKLLLLQEAQVAAQKEAYEL-----RTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQ--H 1061
Cdd:COG4717    310 LPALEELEEEELEELLAALGLppdlsPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEElrA 389

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1062 RQKNLQESLELQRQVAEAQAAHDGVQKEVLGLRQKLAEVEAsgETRAKQLEGHLCESQRAEQTLQAELCRITRKLQ--EA 1139
Cdd:COG4717    390 ALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEEL--EEELEELEEELEELEEELEELREELAELEAELEqlEE 467

                          410       420       430
                   ....*....|....*....|....*....|..
gi 1720355914 1140 SNQADSLQRSLDNACSRVHVLEQELAKAEGAR 1171
Cdd:COG4717    468 DGELAELLQELEELKAELRELAEEWAALKLAL 499
CCCAP pfam15964
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in ...
 320-665 3.38e-03

Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in eukaryotes. CCCAP is also known as SDCCAG8, serologically defined colon cancer antigen 8. It is associated with the centrosome.


Pssm-ID: 435040 [Multi-domain]  Cd Length: 703  Bit Score: 42.20  E-value: 3.38e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  320 RQELRTSQR--LLQDRAQEHEDLLGQLEAQRQEAQLSQASVHLLEREKEALETTMEELRAKADIREAETQKLevtNAELR 397
Cdd:pfam15964  379 QQEKRAQEKeaLRKEMKKEREELGATMLALSQNVAQLEAQVEKVTREKNSLVSQLEEAQKQLASQEMDVTKV---CGEMR 455

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  398 RSLLLRAEQKAElaqqSERSLRELEASQGR-VEQLEEKVSGLRKELATSREALSSMQLQRDILETEKESLHGALAQAESg 476
Cdd:pfam15964  456 YQLNQTKMKKDE----AEKEHREYRTKTGRqLEIKDQEIEKLGLELSESKQRLEQAQQDAARAREECLKLTELLGESEH- 530

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  477 nadlELLVTRLKAEGMEQQDSLAKMAALLEglsqdkgtlnhlALQLEQERDQlrEQQKMLQQEQAGMREQLTQTGQQLGL 556
Cdd:pfam15964  531 ----QLHLTRLEKESIQQSFSNEAKAQALQ------------AQQREQELTQ--KMQQMEAQHDKTVNEQYSLLTSQNTF 592

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  557 IRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVTNKKQALEKQLAQSLQDQEAQMDILQEALHEKNTLSE 636
Cdd:pfam15964  593 IAKLKEECCTLAKKLEEITQKSRSEVEQLSQEKEYLQDRLEKLQKRNEELEEQCVQHGRMHERMKQRLRQLDKHCQATAQ 672

                          330       340
                   ....*....|....*....|....*....
gi 1720355914  637 ERAQLLAKQEALERHSELVTKEAADLRAE 665
Cdd:pfam15964  673 QLVQLLSKQNQLFKERQNLTEEVQSLRSQ 701
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 286-583 3.79e-03

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 42.25  E-value: 3.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  286 AAIERRQQREQELRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRA----QEHEDLLGQLEAQRQEAQLSQASVHLL 361
Cdd:COG3096    836 AELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNKLLPQANlladETLADRLEELREELDAAQEAQAFIQQH 915

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  362 EREKEALETTMEELRAkaDIREAETQKLEVTNA-ELRRSLLLRAEQKAELAQQS-----ERSLRELEASQGRVEQLEEKV 435
Cdd:COG3096    916 GKALAQLEPLVAVLQS--DPEQFEQLQADYLQAkEQQRRLKQQIFALSEVVQRRphfsyEDAVGLLGENSDLNEKLRARL 993

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  436 SGLRKELATSREALSSMQlqrdiletekeslhgalAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALleGLSQDKGTl 515
Cdd:COG3096    994 EQAEEARREAREQLRQAQ-----------------AQYSQYNQVLASLKSSRDAKQQTLQELEQELEEL--GVQADAEA- 1053

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720355914  516 nhlalqleQERDQLREQQkmLQQEQAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQVV 583
Cdd:COG3096   1054 --------EERARIRRDE--LHEELSQNRSRRSQLEKQLTRCEAEMDSLQKRLRKAERDYKQEREQVV 1111
PRK11281 PRK11281
mechanosensitive channel MscK;
1249-1512 3.91e-03

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 41.82  E-value: 3.91e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1249 VRDALRDLVQGLLEAQQERDNSGIQVANLSSQLSEAERERL------RLQSRVEQLQRDLADAEEGQRRAESALQSAQA- 1321
Cdd:PRK11281    78 QKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLstlslrQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTq 157

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1322 ---ARALQKEALQRLE--TEHLASARAAGQERRRLQEQVDTLRQALEESSRP--SQSLADKGRLleqplqQVLPHSRRDr 1394
Cdd:PRK11281   158 perAQAALYANSQRLQqiRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDlqRKSLEGNTQL------QDLLQKQRD- 230

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1395 aerralreqttsLRTER-ARLQGELAALRT-----RLIQTEQeTLKKEEDramlgAKKELLLQSLSHLHQEVDGALRQSQ 1468
Cdd:PRK11281   231 ------------YLTARiQRLEHQLQLLQEainskRLTLSEK-TVQEAQS-----QDEAARIQANPLVAQELEINLQLSQ 292

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....
gi 1720355914 1469 QLQAQMAELEQAhTQrlQELAAQHQRDLAAEAQRLHEAQLQATQ 1512
Cdd:PRK11281   293 RLLKATEKLNTL-TQ--QNLRVKNWLDRLTQSERNIKEQISVLK 333
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
884-1105 3.95e-03

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 41.93  E-value: 3.95e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  884 QREADTLREKLREIAAERSSVRREAE--ELQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQ 961
Cdd:COG3206    181 EEQLPELRKELEEAEAALEEFRQKNGlvDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELL 260

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  962 HSNT--ELRASIHRAEQEKASLKRSKEEQEQKLLllqeaqvaaqkeayELRTRLQELERA-QRDTRRKLQERHRQVRTLE 1038
Cdd:COG3206    261 QSPViqQLRAQLAELEAELAELSARYTPNHPDVI--------------ALRAQIAALRAQlQQEAQRILASLEAELEALQ 326

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720355914 1039 AENQRKRQEVSDLQAQVSRDAQHRQknlqESLELQRQVAEAQAAHDGvqkevlgLRQKLAEVEASGE 1105
Cdd:COG3206    327 AREASLQAQLAQLEARLAELPELEA----ELRRLEREVEVARELYES-------LLQRLEEARLAEA 382
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 799-1096 4.26e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 41.54  E-value: 4.26e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  799 GEIQNLKQERDESLLQLEHEMQQALSLKDaEKSLLSKELSGAHRELERARQEaQNQQVQAEATVTTMTKELRTLQVQ--- 875
Cdd:TIGR04523  145 TEIKKKEKELEKLNNKYNDLKKQKEELEN-ELNLLEKEKLNIQKNIDKIKNK-LLKLELLLSNLKKKIQKNKSLESQise 222

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  876 FEEAISTHQREADTLREKLREIAAERSSVRREAEELQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEDEVQ 955
Cdd:TIGR04523  223 LKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNN 302

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  956 EKDvlQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEaqvaaqkEAYELRTRLQELERAQRDTRRKLQERHRQVR 1035
Cdd:TIGR04523  303 QKE--QDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNE-------QISQLKKELTNSESENSEKQRELEEKQNEIE 373

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720355914 1036 TLEAENQRKRQEVSDLQAQVSRDAQHRQKNLQESLELQRQVAEAQAAHDGVQKEVLGLRQK 1096
Cdd:TIGR04523  374 KLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKET 434
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
284-940 4.60e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 41.59  E-value: 4.60e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  284 VQAAIERRQQREQELRLRLESSQEEAAglREQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVHLLER 363
Cdd:PRK03918   137 IDAILESDESREKVVRQILGLDDYENA--YKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISS 214

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  364 EKEALETTMEELRAKadIREAETQKLEVTNAELR-RSLLLRAEQKAELAQQSERSLRELEAsqgRVEQLEEKVsglrKEL 442
Cdd:PRK03918   215 ELPELREELEKLEKE--VKELEELKEEIEELEKElESLEGSKRKLEEKIRELEERIEELKK---EIEELEEKV----KEL 285

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  443 ATSREalssmqlqrdiLETEKESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQL 522
Cdd:PRK03918   286 KELKE-----------KAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRL 354

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  523 E--QERDQLREQQKMLQQEQAGMREQLtqTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVt 600
Cdd:PRK03918   355 EelEERHELYEEAKAKKEELERLKKRL--TGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEEL- 431

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  601 nKKQALEKQLAQSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQEalerhselvtkeaaDLRAERNSLENSLFEAQRLT 680
Cdd:PRK03918   432 -KKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKER--------------KLRKELRELEKVLKKESELI 496

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  681 TQLQTQQeqlegkaEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQeqeaqlalerqelahtEDLARLHR 760
Cdd:PRK03918   497 KLKELAE-------QLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLK----------------KELEKLEE 553

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  761 EKDTLSLSLAEEKEAAARWMEQQKELLTRSAADREALQGEIQNLKQERDEsllqlehemqqALSLKDAEKSL--LSKELS 838
Cdd:PRK03918   554 LKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNE-----------YLELKDAEKELerEEKELK 622

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  839 GAHRELERARQEAQnqqvQAEATVTTMTKELRTLQVQFEEaisthqREADTLREKLREIAAERSSVRREAEELQAQLNVA 918
Cdd:PRK03918   623 KLEEELDKAFEELA----ETEKRLEELRKELEELEKKYSE------EEYEELREEYLELSRELAGLRAELEELEKRREEI 692

                          650       660
                   ....*....|....*....|..
gi 1720355914  919 HERLAELRQELQASEESREGLQ 940
Cdd:PRK03918   693 KKTLEKLKEELEEREKAKKELE 714
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 498-1055 4.96e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 41.54  E-value: 4.96e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  498 LAKMAALLEGLSQDKGTLNHLALQLEQERDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRAerrslketcghLEQKQDH 577
Cdd:TIGR04523  147 IKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKK-----------KIQKNKS 215

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  578 LEKQVVLLGQENAQLREQVGQVTNKKQALEKQLaQSLQDQEAQmdILQEALHEKNTLSEeraqllaKQEALERHSELVTk 657
Cdd:TIGR04523  216 LESQISELKKQNNQLKDNIEKKQQEINEKTTEI-SNTQTQLNQ--LKDEQNKIKKQLSE-------KQKELEQNNKKIK- 284

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  658 eaaDLRAERNSLENSLFEAQRLTTQLQTQQEqlegKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQE 737
Cdd:TIGR04523  285 ---ELEKQLNQLKSEISDLNNQKEQDWNKEL----KSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESE 357

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  738 QEAQLALERQELAHTEDLARLHREKDTLSLSLAEEKEAAARWMEQQKELltrsaadREALQGEIQNLKQERDESLLQLEH 817
Cdd:TIGR04523  358 NSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKL-------NQQKDEQIKKLQQEKELLEKEIER 430

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  818 EMQQALSLKDAEKSLLSK--ELSGAHRELERARQEAQNQQVQAEATVTTMTKELRTLQVQFEEA---ISTHQREADTLRE 892
Cdd:TIGR04523  431 LKETIIKNNSEIKDLTNQdsVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKekeLKKLNEEKKELEE 510

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  893 KLREIAAERSSVRREAEELQAQLNVAHERLAELRQELqasEESREGLQREALgarralEDEVQEKDvlqhsntelrASIH 972
Cdd:TIGR04523  511 KVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDEL---NKDDFELKKENL------EKEIDEKN----------KEIE 571

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  973 RAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQ 1052
Cdd:TIGR04523  572 ELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIK 651


                   ...
gi 1720355914 1053 AQV 1055
Cdd:TIGR04523  652 ETI 654
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1280-1503 5.01e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 41.44  E-value: 5.01e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1280 QLSEAERERLRLQSRVEQLQRDLADAEEGQRRAESALQSAQAARALQKEALQRLETEHLASARAAGQERRRLQEQVDTLR 1359
Cdd:COG4913    236 DLERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLE 315

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1360 QALEESsrpsqsladkgrlleqplqqvlphsrrdRAERRALREQTTSLRTER-ARLQGELAALRTRLIQTEQETLKKEED 1438
Cdd:COG4913    316 ARLDAL----------------------------REELDELEAQIRGNGGDRlEQLEREIERLERELEERERRRARLEAL 367

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720355914 1439 RAMLGAKKELLLQSLSHLHQEVDGALRQSQQLQAQMAELEQAHTQRLQELAAQHqRDLAAEAQRL 1503
Cdd:COG4913    368 LAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRREL-RELEAEIASL 431
CHASE3 COG5278
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms];
285-699 5.13e-03

Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms];


Pssm-ID: 444089 [Multi-domain]  Cd Length: 530  Bit Score: 41.43  E-value: 5.13e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  285 QAAIERRQQREQELRLRLESSQEEAAGLREQLSG--YRQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVHLLE 362
Cdd:COG5278    114 ALIDQWLAELEQVIALRRAGGLEAALALVRSGEGkaLMDEIRARLLLLALALAALLLAAAALLLLLLALAALLALAELLL 193

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  363 REKEALETTMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKEL 442
Cdd:COG5278    194 LALARALAALLLLLLLEAELAAAAALLAAAAALAALAALELLAALALALALLLAALLLALLAALALAALLAAALLALAAL 273

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  443 ATSREALSSMQLQRDILETEKESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQL 522
Cdd:COG5278    274 LLALAAAAALAAAAALELAAAEALALAELELELLLAAAAAAAAAAAAAAAALAALLALALATALAAAAAALALLAALLAE 353

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  523 EQERDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVTNK 602
Cdd:COG5278    354 AAAAAAEEAEAAAEAAAAALAGLAEVEAEGAAEAVELEVLAIAAAAAAAAAEAAAAAAAAAAASAAEALELAEALAEALA 433

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  603 KQALEKQLAQSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAERNSLENSLFEAQRLTTQ 682
Cdd:COG5278    434 LAEEEALALAAASSELAEAGAALALAAAEALAEELAAVAALAALAAAAAALAEAEAAAALAAAAALSLALALAALLLAAA 513

                          410
                   ....*....|....*..
gi 1720355914  683 LQTQQEQLEGKAEAAQL 699
Cdd:COG5278    514 EAALAAALAAALASAEL 530
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
 904-1541 5.29e-03

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 41.75  E-value: 5.29e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  904 VRREAEELQA---QLNVAHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDvlqhsnTELRASIHRAEQEKAS 980
Cdd:pfam12128  239 IRPEFTKLQQefnTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLD------DQWKEKRDELNGELSA 312

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  981 LKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHR----QVRTLEAENQRKRQEVSDLQAQVS 1056
Cdd:pfam12128  313 ADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKaltgKHQDVTAKYNRRRSKIKEQNNRDI 392

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1057 RDAQHRQKNLQESLELQRQVAEA--QAAHDGVQKEVLGLRQKLAEVEASGETRAKQLEGHLCESQRAEQTLQAElcritR 1134
Cdd:pfam12128  393 AGIKDKLAKIREARDRQLAVAEDdlQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQL-----E 467

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1135 KLQEASNQADSLQRSldnACSRVHVLEQELAKAEGARCNAEAQLGRLWSTLcsglGQSRNLLASPKRPHSPTTGS----- 1209
Cdd:pfam12128  468 NFDERIERAREEQEA---ANAEVERLQSELRQARKRRDQASEALRQASRRL----EERQSALDELELQLFPQAGTllhfl 540

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1210 ---------------SQTRPGRQRTSPPTRSYSPARWPSPVPVDPKSEVIDV---AFVRDALR---DLVQGLLEAQQERd 1268
Cdd:pfam12128  541 rkeapdweqsigkviSPELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRIDVpewAASEEELRerlDKAEEALQSAREK- 619

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1269 nsgiqVANLSSQLSEAERErlrlqsrVEQLQRDLADAEEGQRRAEsalqsaqaaralqkEALQRLETEHLASARAAGQER 1348
Cdd:pfam12128  620 -----QAAAEEQLVQANGE-------LEKASREETFARTALKNAR--------------LDLRRLFDEKQSEKDKKNKAL 673

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1349 RRLQEQVDTLRqaleessrpsQSLADKGRLLEQPLQQVLPHSRRDRAERR-----ALREQTTSLRTERARLQGELAALRT 1423
Cdd:pfam12128  674 AERKDSANERL----------NSLEAQLKQLDKKHQAWLEEQKEQKREARtekqaYWQVVEGALDAQLALLKAAIAARRS 743

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1424 RLiQTEQETLKKEEDRAMlgAKKELLLQSLSHLHQEVDGALRQSQQLQAQMAELEQAHtQRLQELAAQHQRDLAAEAQRL 1503
Cdd:pfam12128  744 GA-KAELKALETWYKRDL--ASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRYF-DWYQETWLQRRPRLATQLSNI 819

                          650       660       670
                   ....*....|....*....|....*....|....*...
gi 1720355914 1504 HEAQLQATQALESCEQIHQQRVKVLERQVASLKKRLDK 1541
Cdd:pfam12128  820 ERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVR 857
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 335-646 5.88e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 41.16  E-value: 5.88e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  335 QEHEDLLGQLEAQRQEAQLSQASVHLLEREKEALETTMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQ- 413
Cdd:TIGR04523  169 EELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEi 248

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  414 --SERSLRELEASQGRV-EQLEEKvsglRKELATSREALSSMQLQRDILETEKESLHGalaQAESGnadlelLVTRLKAE 490
Cdd:TIGR04523  249 snTQTQLNQLKDEQNKIkKQLSEK----QKELEQNNKKIKELEKQLNQLKSEISDLNN---QKEQD------WNKELKSE 315

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  491 GMEQQDslaKMAALLEGLSQDKGTLNhlalQLEQERDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKETCGH 570
Cdd:TIGR04523  316 LKNQEK---KLEEIQNQISQNNKIIS----QLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKN 388

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720355914  571 LEQKQDHLEKQVVLLGQENAQLREQVGQVTNKKQALEKQ---LAQSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQE 646
Cdd:TIGR04523  389 LESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEierLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLE 467
HEC1 COG5185
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ...
 877-1139 6.54e-03

Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444066 [Multi-domain]  Cd Length: 594  Bit Score: 41.10  E-value: 6.54e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  877 EEAISTHQREADTLREKLREiAAERSSVRREAEELQAQLNvAHERLAELRQELQASEESREGLQREALGARRALEDEVQE 956
Cdd:COG5185    281 NENANNLIKQFENTKEKIAE-YTKSIDIKKATESLEEQLA-AAEAEQELEESKRETETGIQNLTAEIEQGQESLTENLEA 358

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  957 KDVLQHS---NTELRASIHRAEQEKASLKRSKEEQEQKLL-LLQEAQVAAQKEAYELR---TRLQELERAQRDTRRKLQE 1029
Cdd:COG5185    359 IKEEIENivgEVELSKSSEELDSFKDTIESTKESLDEIPQnQRGYAQEILATLEDTLKaadRQIEELQRQIEQATSSNEE 438

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1030 RHRQVRTLEAENQRKRQEVSDL-QAQVSRDAQHRQKNLQESLE-LQRQVAEAQAAHDGVQKEVLGLRQKLAEVEASGETR 1107
Cdd:COG5185    439 VSKLLNELISELNKVMREADEEsQSRLEEAYDEINRSVRSKKEdLNEELTQIESRVSTLKATLEKLRAKLERQLEGVRSK 518

                          250       260       270
                   ....*....|....*....|....*....|..
gi 1720355914 1108 AKQLEGHLCESQRAEQTLQAELCRITRKLQEA 1139
Cdd:COG5185    519 LDQVAESLKDFMRARGYAHILALENLIPASEL 550
PRK09039 PRK09039
peptidoglycan -binding protein;
1264-1385 6.85e-03

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 40.72  E-value: 6.85e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1264 QQERDNSGIQVANLSSQLSEAERERLRLQSRVEQLQRDLADAEEGQRRAESALQSAQAARALQKEALQRLETEhLASARA 1343
Cdd:PRK09039    52 DSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQE-LDSEKQ 130

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1720355914 1344 AGQERRR----LQEQVDTLRQ-------ALEESSRPSQS----LADKGRLLEQPLQQ 1385
Cdd:PRK09039   131 VSARALAqvelLNQQIAALRRqlaaleaALDASEKRDREsqakIADLGRRLNVALAQ 187
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
29-466 6.91e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 40.91  E-value: 6.91e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914   29 RQQLEHMQKANDTLARELTRATHSLVHLQRKLELQESQRLSLRQPRDILPLWRQAKALQTHLAELrastERGLTDVQADM 108
Cdd:COG4717     80 LKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAEL----PERLEELEERL 155

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  109 TRTAQRLHmaclnldshlrltassmtsDLEQRLREQAREMLQLQGQWAAEKVALQARLSEQTLLVEKLSVQKEQGERAIL 188
Cdd:COG4717    156 EELRELEE-------------------ELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELE 216

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  189 TLKSDIQRLKSRRSG--GQLAVDELRDEVESLHHVLASIKEVAQSDAMCPELAWSSSIEVREAQARLRSPPRSVSPHQRm 266
Cdd:COG4717    217 EAQEELEELEEELEQleNELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAR- 295

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  267 spartsSPTSLHPALQAVQAAIERRQQREQELRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEA 346
Cdd:COG4717    296 ------EKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELE 369

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  347 QRQEAQLSQASVHLLEREKEALETTMEELRAKADIREAETQkleVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQG 426
Cdd:COG4717    370 QEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQ---LEELLGELEELLEALDEEELEEELEELEEELEELEE 446

                          410       420       430       440
                   ....*....|....*....|....*....|....*....|..
gi 1720355914  427 RVEQLEEKVSGLRKELAT--SREALSSMQLQRDILETEKESL 466
Cdd:COG4717    447 ELEELREELAELEAELEQleEDGELAELLQELEELKAELREL 488
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
184-447 6.96e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 41.05  E-value: 6.96e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  184 ERAILTLKSDIQRLKSRRSGGQLAVDELRDEVESLHHVLASIKEVAQSDamcpelawSSSIEVREAQARLRSPprsvspH 263
Cdd:COG4913    609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYS--------WDEIDVASAEREIAEL------E 674

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  264 QRMSPARTSSPTslhpaLQAVQAAIERRQQREQELRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQ-EHEDLLG 342
Cdd:COG4913    675 AELERLDASSDD-----LAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDlARLELRA 749

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  343 QLEAQRQEAQLSQASVHL---LEREKEALETTMEELRAK-ADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSL 418
Cdd:COG4913    750 LLEERFAAALGDAVERELrenLEERIDALRARLNRAEEElERAMRAFNREWPAETADLDADLESLPEYLALLDRLEEDGL 829

                          250       260       270
                   ....*....|....*....|....*....|.
gi 1720355914  419 RELEA--SQGRVEQLEEKVSGLRKELATSRE 447
Cdd:COG4913    830 PEYEErfKELLNENSIEFVADLLSKLRRAIR 860
mukB PRK04863
chromosome partition protein MukB;
1257-1491 7.56e-03

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 41.10  E-value: 7.56e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1257 VQGLLEAQQERDNSGIQVANLSSQLSEAERERLRLQSRVEQLQRDLADAEEGQRRAESALQSAQA---------ARALQK 1327
Cdd:PRK04863   420 VQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKiagevsrseAWDVAR 499

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1328 EALQRLETEHLASARAAGQE------RRRLQEQVDT---LRQALEESSRPSQSLADKGRLLEQ------PLQQVLPHSRR 1392
Cdd:PRK04863   500 ELLRRLREQRHLAEQLQQLRmrlselEQRLRQQQRAerlLAEFCKRLGKNLDDEDELEQLQEElearleSLSESVSEARE 579

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1393 DRAERRALREQTTSLRTERARLQGELAALRTRLIQTEQETLKKEEDRAMLGAKKELLLQSLSHLHQEVDGALRQSQQLQA 1472
Cdd:PRK04863   580 RRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDE 659

                          250       260
                   ....*....|....*....|..
gi 1720355914 1473 QMAELEQAHT---QRLQELAAQ 1491
Cdd:PRK04863   660 EIERLSQPGGsedPRLNALAER 681
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
410-623 8.27e-03

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 40.77  E-value: 8.27e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  410 LAQQSERSLRELEASQGRVEQLEEKVSGLRKELAT--SREALSSMQLQRDILETEKESLHGALAQAESGNADLELLVTRL 487
Cdd:COG3206    166 LELRREEARKALEFLEEQLPELRKELEEAEAALEEfrQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAAL 245

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  488 KAEGMEQQDSLAKMAALlEGLSQDKGTLNHLALQLEQERDQLREQQ---KMLQQEQAGMREQLTQTGQQ-LGLIRAERRS 563
Cdd:COG3206    246 RAQLGSGPDALPELLQS-PVIQQLRAQLAELEAELAELSARYTPNHpdvIALRAQIAALRAQLQQEAQRiLASLEAELEA 324

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  564 LKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVTNKKQALEkQLAQSLQDQEAQMDI 623
Cdd:COG3206    325 LQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYE-SLLQRLEEARLAEAL 383
hsdR PRK11448
type I restriction enzyme EcoKI subunit R; Provisional
 474-553 8.50e-03

type I restriction enzyme EcoKI subunit R; Provisional


Pssm-ID: 236912 [Multi-domain]  Cd Length: 1123  Bit Score: 40.71  E-value: 8.50e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  474 ESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQLEQERDQLREQQKMLQQE----QAGMREQLTQ 549
Cdd:PRK11448   141 ENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKaaetSQERKQKRKE 220


                   ....
gi 1720355914  550 TGQQ 553
Cdd:PRK11448   221 ITDQ 224
mukB PRK04863
chromosome partition protein MukB;
1266-1550 8.51e-03

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 41.10  E-value: 8.51e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1266 ERDNSGIQVANLSSQLSEAERERLRLQSRVEQLQRDLADAEEGQRRAESALQSAqaaralqkealqrleTEHLASARAAg 1345
Cdd:PRK04863   280 ERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAA---------------SDHLNLVQTA- 343

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1346 qerRRLQEQVDTLRQALEESSRpsqsladkgRLLEQPLQQVLPHSRRDRAERRALR--EQTTSLRTERARLQGELAALRT 1423
Cdd:PRK04863   344 ---LRQQEKIERYQADLEELEE---------RLEEQNEVVEEADEQQEENEARAEAaeEEVDELKSQLADYQQALDVQQT 411

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1424 RLIQTEQETLKKEEDRAMLGA------KKELLLQSLSHLHQEVDGALRQSQQlqaQMAELEQAHTQrlQELAAQHQRDLA 1497
Cdd:PRK04863   412 RAIQYQQAVQALERAKQLCGLpdltadNAEDWLEEFQAKEQEATEELLSLEQ---KLSVAQAAHSQ--FEQAYQLVRKIA 486

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1720355914 1498 AEAQRlHEAQLQATQALE--SCEQIHQQRVKVLERQVASLKKRLDKEvwQRQQQA 1550
Cdd:PRK04863   487 GEVSR-SEAWDVARELLRrlREQRHLAEQLQQLRMRLSELEQRLRQQ--QRAERL 538
mukB PRK04863
chromosome partition protein MukB;
891-1181 8.80e-03

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 40.71  E-value: 8.80e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  891 REKLREIAAERSSVRREAEELQAQLNVAHERLAELRQELQASEESREGLQREALGAR----RALEDEVQEKDVLQHSNTE 966
Cdd:PRK04863   278 ANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASdhlnLVQTALRQQEKIERYQADL 357

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  967 LRASIHRAEQEKASlkrskEEQEQKLLLLQEAQVAAQKEAYELRTRL----QELERAQrdtRRKLQERHRQVRTLEAE-- 1040
Cdd:PRK04863   358 EELEERLEEQNEVV-----EEADEQQEENEARAEAAEEEVDELKSQLadyqQALDVQQ---TRAIQYQQAVQALERAKql 429

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914 1041 NQRKRQEVSDLQAQVSRDAQHRQKNLQESLELQRQVAEAQAAHDGVQKEVLGLRQKLAEVEASGETR-AKQLEGHLcESQ 1119
Cdd:PRK04863   430 CGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDvARELLRRL-REQ 508

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720355914 1120 RAEQTLQAELCRITRKLQEASNQADSLQRSLDNACSRVHVLEQELAKAEGARCNAEAQLGRL 1181
Cdd:PRK04863   509 RHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESL 570
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
 296-1016 9.06e-03

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 40.72  E-value: 9.06e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  296 QELRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQL-EAQRQEAQLSQASVHLLEREKEALETTMEE 374
Cdd:TIGR00618  190 KSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTqQSHAYLTQKREAQEEQLKKQQLLKQLRARI 269

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  375 LRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRK---ELATSREALSS 451
Cdd:TIGR00618  270 EELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKqqsSIEEQRRLLQT 349

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  452 MQLQRDILETEKESLHGALAQAESGNADLELLVTrLKAEGMEQQDSLAKMAALLEGLSQDKGTL-------NHLALQLEQ 524
Cdd:TIGR00618  350 LHSQEIHIRDAHEVATSIREISCQQHTLTQHIHT-LQQQKTTLTQKLQSLCKELDILQREQATIdtrtsafRDLQGQLAH 428

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  525 ERDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQvvllgqenAQLREQVGQVTNKKQ 604
Cdd:TIGR00618  429 AKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQE--------TRKKAVVLARLLELQ 500

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  605 ALEKQLAQSLQDQEAQMdilqEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAERNSLENSLFEAQRLTTQLQ 684
Cdd:TIGR00618  501 EEPCPLCGSCIHPNPAR----QDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILT 576

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  685 TQQEQLEGKAEAAQLARRALQVEIE---------RLKSDWEVRETKLQLHLGQLQQQAAQQEQEaqlalerqelahtEDL 755
Cdd:TIGR00618  577 QCDNRSKEDIPNLQNITVRLQDLTEklseaedmlACEQHALLRKLQPEQDLQDVRLHLQQCSQE-------------LAL 643

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  756 ARLHREKDTLSLSLAEEKEAAARWMEQQKELLTRSAADREALQGEIQNLKQERD--ESLLQLEHEMQQALSLKDAEKSLL 833
Cdd:TIGR00618  644 KLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEmlAQCQTLLRELETHIEEYDREFNEI 723

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  834 SKELSGAHRELERARQEAQNQQVQAEATVTTMTKELRTLQVQFEEAISThqreADTLREKLREIAAERSSVRREAEELQA 913
Cdd:TIGR00618  724 ENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTA----ALQTGAELSHLAAEIQFFNRLREEDTH 799

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  914 QLNvahERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQHS-NTELRASIHRAEQEKASLKRSKEEQEQKL 992
Cdd:TIGR00618  800 LLK---TLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEiTHQLLKYEECSKQLAQLTQEQAKIIQLSD 876

                          730       740
                   ....*....|....*....|....
gi 1720355914  993 LLLQEAQVAAQKEAYELRTRLQEL 1016
Cdd:TIGR00618  877 KLNGINQIKIQFDGDALIKFLHEI 900
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
496-978 9.54e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 40.52  E-value: 9.54e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  496 DSLAKMAALLEGLSQDKGTLNHLALQ-LEQERDQLREQQKMLQQEQAgMREQLTQTGQQLGLIRAERRSLKETCGHLEQK 574
Cdd:COG4717     49 ERLEKEADELFKPQGRKPELNLKELKeLEEELKEAEEKEEEYAELQE-ELEELEEELEELEAELEELREELEKLEKLLQL 127

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  575 QDHLekqvvllgQENAQLREQVGQVTNKKQALEKQLAQSLQDQEAQMDILQEALHEKNTLSEERAQL-LAKQEALERHSE 653
Cdd:COG4717    128 LPLY--------QELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLsLATEEELQDLAE 199

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  654 lvtkEAADLRAERNSLENSLFEAQRLTTQLQTQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQA 733
Cdd:COG4717    200 ----ELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTI 275

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  734 AQQEQEAQLALERQELAHTEDLARLHREKDTLSLSLAEEKEAAARWMEQQKELLTRSAADREALQGEIQNLK--QERDES 811
Cdd:COG4717    276 AGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEelQELLRE 355

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  812 LLQLEHEMQQAlSLKDAEKSLLSKELSGAHRELERARQEAQNQQVQAEatvttmtkELRTLQVQFEEAISTHQREADTLR 891
Cdd:COG4717    356 AEELEEELQLE-ELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKE--------ELEELEEQLEELLGELEELLEALD 426

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720355914  892 EKlrEIAAERSSVRREAEELQAQLNVAHERLAELRQELQASEESRE--GLQREALGARRALEDEVQEKDVLQHSNTELRA 969
Cdd:COG4717    427 EE--ELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGElaELLQELEELKAELRELAEEWAALKLALELLEE 504


                   ....*....
gi 1720355914  970 SIHRAEQEK 978
Cdd:COG4717    505 AREEYREER 513
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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