|
Name |
Accession |
Description |
Interval |
E-value |
| SM-ATX |
pfam14438 |
Ataxin 2 SM domain; This SM domain is found in Ataxin-2. |
88-161 |
5.95e-21 |
|
Ataxin 2 SM domain; This SM domain is found in Ataxin-2.
:
Pssm-ID: 464173 Cd Length: 78 Bit Score: 87.99 E-value: 5.95e-21
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720412635 88 MVHILTSVVGSKCEVQVKNGGIYEGVFKTYSP--KCDLVLDAAHEKSTESSSG--PKREEIMESVLFKCSDFVVVQFK 161
Cdd:pfam14438 1 LLFLLTSLVGLVVEVTTKNGEVYEGIFSTASLekDFGVVLKMARRIKKSNGSGlnPVRGEIVDTMIFPAKDIVDIEAK 78
|
|
| LsmAD |
pfam06741 |
LsmAD domain; This domain is found associated with Lsm domain. |
228-289 |
8.34e-16 |
|
LsmAD domain; This domain is found associated with Lsm domain.
:
Pssm-ID: 461998 [Multi-domain] Cd Length: 65 Bit Score: 72.60 E-value: 8.34e-16
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720412635 228 YGVVSTYDSSLssYTVPLERdNSEEFLKREARANQLAEEIESSAQYKARVALENDDR------SEEEK 289
Cdd:pfam06741 1 FGVKSTYDENL--YTTKLDR-SSPDYKEREAEAERIAREIEGSASTNAHVAEERGLDvddsglDEEDK 65
|
|
| PAT1 super family |
cl37801 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
681-869 |
1.99e-07 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
The actual alignment was detected with superfamily member pfam09770:
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 55.43 E-value: 1.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 681 KPSTTPTSPRPQAQPSPSM-----------VGHQQPAPVyTQPVCFAPNMMYPVPVSPGVQPLYPIPMTPMPVNQAKTYR 749
Cdd:pfam09770 169 KAAAPAPAPQPAAQPASLPapsrkmmsleeVEAAMRAQA-KKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQ 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 750 AVPNMPQQRQDQHHQ-STMMHPASAAGPPIVATPPaystqyvAYSPQQFPNQPLVQHVPHYQSQHPHVYSPVIQGNARMM 828
Cdd:pfam09770 248 QQPQQPQQHPGQGHPvTILQRPQSPQPDPAQPSIQ-------PQAQQFHQQPPPVPVQPTQILQNPNRLSAARVGYPQNP 320
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1720412635 829 APPAHAQPGlvsssaaqfgahEQTHAMYVSTGSLAQQYAHP 869
Cdd:pfam09770 321 QPGVQPAPA------------HQAHRQQGSFGRQAPIITHP 349
|
|
| Atrophin-1 super family |
cl38111 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
622-1031 |
1.85e-05 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
The actual alignment was detected with superfamily member pfam03154:
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 49.00 E-value: 1.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 622 NAEHKRGPEVTSQGVQTSSPACKQEKDDREEKKDTTEQVRKSTLNPNAKEFNPRSFSQPKPSTTPTSPRPQAQPSPSMVG 701
Cdd:pfam03154 127 NDEGSSDPKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQILQTQPPVLQAQSGAASPPSPPPPGTTQAATAGPTPSAPSV 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 702 HQQPAPVYTQPVCFAPNMMYPVPVSPGVQPLYP-------IPMTPMPvnqaktyraVPNMPQQRQDQHHQSTMMHPASAA 774
Cdd:pfam03154 207 PPQGSPATSQPPNQTQSTAAPHTLIQQTPTLHPqrlpsphPPLQPMT---------QPPPPSQVSPQPLPQPSLHGQMPP 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 775 GPPIVATPPaystqyvAYSPQQFPNQPLVQHVPHYQSQHPHVYSPVIQGNARMMA--PPAHAQPGLVSSSAAQFGAHEQT 852
Cdd:pfam03154 278 MPHSLQTGP-------SHMQHPVPPQPFPLTPQSSQSQVPPGPSPAAPGQSQQRIhtPPSQSQLQSQQPPREQPLPPAPL 350
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 853 HAMYVSTGSLAQQYAHPNAALHPHTPHpqpsatPTGQQQSQHGGSHPAPSPVQHHQHQAAQALHLASPQQQSAIYHAGLA 932
Cdd:pfam03154 351 SMPHIKPPPTTPIPQLPNPQSHKHPPH------LSGPSPFQMNSNLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQQL 424
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 933 PTPPSMTPASnTQSPQSSFPAAQQ-TVFTIHPSHVQPAYTTPPHMAHVPqahvQSGMVPSHPTAHAPMMLMTTQPPggpq 1011
Cdd:pfam03154 425 PPPPAQPPVL-TQSQSLPPPAASHpPTSGLHQVPSQSPFPQHPFVPGGP----PPITPPSGPPTSTSSAMPGIQPP---- 495
|
410 420
....*....|....*....|
gi 1720412635 1012 AALAQSALQPIPVSTTAHFP 1031
Cdd:pfam03154 496 SSASVSSSGPVPAAVSCPLP 515
|
|
| PRK07003 super family |
cl35530 |
DNA polymerase III subunit gamma/tau; |
354-523 |
2.17e-03 |
|
DNA polymerase III subunit gamma/tau;
The actual alignment was detected with superfamily member PRK07003:
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 42.14 E-value: 2.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 354 FNPNAGSDQRVVNGGPPRMsPKAQRHPRNHRVSAGRGSMSSGLEFVShNPPSEAAAPPVARTSPAGGTWSSVVSGVPRLS 433
Cdd:PRK07003 358 FEPAVTGGGAPGGGVPARV-AGAVPAPGARAAAAVGASAVPAVTAVT-GAAGAALAPKAAAAAAATRAEAPPAAPAPPAT 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 434 PKTHRPRSPRQSSIGNSPSGPVLASPQAGIIPAEAVSMPVPAASPTPASP--ASNRALTPSIEAKDSRLQDQRQNSP--A 509
Cdd:PRK07003 436 ADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPpdAAFEPAPRAAAPSAATPAAVPDARApaA 515
|
170
....*....|....
gi 1720412635 510 GSKENVKASETSPS 523
Cdd:PRK07003 516 ASREDAPAAAAPPA 529
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SM-ATX |
pfam14438 |
Ataxin 2 SM domain; This SM domain is found in Ataxin-2. |
88-161 |
5.95e-21 |
|
Ataxin 2 SM domain; This SM domain is found in Ataxin-2.
Pssm-ID: 464173 Cd Length: 78 Bit Score: 87.99 E-value: 5.95e-21
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720412635 88 MVHILTSVVGSKCEVQVKNGGIYEGVFKTYSP--KCDLVLDAAHEKSTESSSG--PKREEIMESVLFKCSDFVVVQFK 161
Cdd:pfam14438 1 LLFLLTSLVGLVVEVTTKNGEVYEGIFSTASLekDFGVVLKMARRIKKSNGSGlnPVRGEIVDTMIFPAKDIVDIEAK 78
|
|
| LsmAD |
pfam06741 |
LsmAD domain; This domain is found associated with Lsm domain. |
228-289 |
8.34e-16 |
|
LsmAD domain; This domain is found associated with Lsm domain.
Pssm-ID: 461998 [Multi-domain] Cd Length: 65 Bit Score: 72.60 E-value: 8.34e-16
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720412635 228 YGVVSTYDSSLssYTVPLERdNSEEFLKREARANQLAEEIESSAQYKARVALENDDR------SEEEK 289
Cdd:pfam06741 1 FGVKSTYDENL--YTTKLDR-SSPDYKEREAEAERIAREIEGSASTNAHVAEERGLDvddsglDEEDK 65
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
681-869 |
1.99e-07 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 55.43 E-value: 1.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 681 KPSTTPTSPRPQAQPSPSM-----------VGHQQPAPVyTQPVCFAPNMMYPVPVSPGVQPLYPIPMTPMPVNQAKTYR 749
Cdd:pfam09770 169 KAAAPAPAPQPAAQPASLPapsrkmmsleeVEAAMRAQA-KKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQ 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 750 AVPNMPQQRQDQHHQ-STMMHPASAAGPPIVATPPaystqyvAYSPQQFPNQPLVQHVPHYQSQHPHVYSPVIQGNARMM 828
Cdd:pfam09770 248 QQPQQPQQHPGQGHPvTILQRPQSPQPDPAQPSIQ-------PQAQQFHQQPPPVPVQPTQILQNPNRLSAARVGYPQNP 320
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1720412635 829 APPAHAQPGlvsssaaqfgahEQTHAMYVSTGSLAQQYAHP 869
Cdd:pfam09770 321 QPGVQPAPA------------HQAHRQQGSFGRQAPIITHP 349
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
680-978 |
4.10e-07 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 54.56 E-value: 4.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 680 PKPSTTPTSPRPQAQPSP--SMVGHQQPAPVYTQPVCFAPNMMYPVPVSPGVQ------PLYPIPMTPMPVNQAKTYRAV 751
Cdd:PHA03247 2674 AQASSPPQRPRRRAARPTvgSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAaarqasPALPAAPAPPAVPAGPATPGG 2753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 752 PNMPQQRQDQHHQSTMMHPAS-AAGPPIVATPPAYSTQYVAYSPQQFPNQPLVQHVPhyqSQHPHVYSPVIQGNARMMAP 830
Cdd:PHA03247 2754 PARPARPPTTAGPPAPAPPAApAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAA---VLAPAAALPPAASPAGPLPP 2830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 831 PAHAQPGLVSSSAAQFGAHEQTHAMYVSTGSLAQQYAHPNAALHPHTPH-------PQPSATPTGQQQSQHGGSHPAPSP 903
Cdd:PHA03247 2831 PTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPArppvrrlARPAVSRSTESFALPPDQPERPPQ 2910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 904 VQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQS-PQSSFPAAQ-------------QTVFTIHPSHVQPA 969
Cdd:PHA03247 2911 PQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGePSGAVPQPWlgalvpgrvavprFRVPQPAPSREAPA 2990
|
....*....
gi 1720412635 970 YTTPPHMAH 978
Cdd:PHA03247 2991 SSTPPLTGH 2999
|
|
| PABP-1234 |
TIGR01628 |
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
652-817 |
6.53e-06 |
|
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.
Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 50.19 E-value: 6.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 652 EKKDTteqvRKSTLNpnaKEFNPRSFSQPKPSTTptSPRPQAQPSPSMVGHQQPAPVYTQPVCFAPNMMYPVPVSPGVQP 731
Cdd:TIGR01628 362 QRKEQ----RRAHLQ---DQFMQLQPRMRQLPMG--SPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPTPMGPGGPL 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 732 LypiPMTPMPVNQAktyRAVPNMPQQRQDQHHQSTMMHPASAAGPPIVATPPAYSTQYVAYSPQQFPNQPLVQHVPHYQS 811
Cdd:TIGR01628 433 R---PNGLAPMNAV---RAPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQDLPQPQSTASQGGQNKKLAQVLASATPQMQK 506
|
170
....*....|..
gi 1720412635 812 Q------HPHVY 817
Cdd:TIGR01628 507 QvlgerlFPLVE 518
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
622-1031 |
1.85e-05 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 49.00 E-value: 1.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 622 NAEHKRGPEVTSQGVQTSSPACKQEKDDREEKKDTTEQVRKSTLNPNAKEFNPRSFSQPKPSTTPTSPRPQAQPSPSMVG 701
Cdd:pfam03154 127 NDEGSSDPKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQILQTQPPVLQAQSGAASPPSPPPPGTTQAATAGPTPSAPSV 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 702 HQQPAPVYTQPVCFAPNMMYPVPVSPGVQPLYP-------IPMTPMPvnqaktyraVPNMPQQRQDQHHQSTMMHPASAA 774
Cdd:pfam03154 207 PPQGSPATSQPPNQTQSTAAPHTLIQQTPTLHPqrlpsphPPLQPMT---------QPPPPSQVSPQPLPQPSLHGQMPP 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 775 GPPIVATPPaystqyvAYSPQQFPNQPLVQHVPHYQSQHPHVYSPVIQGNARMMA--PPAHAQPGLVSSSAAQFGAHEQT 852
Cdd:pfam03154 278 MPHSLQTGP-------SHMQHPVPPQPFPLTPQSSQSQVPPGPSPAAPGQSQQRIhtPPSQSQLQSQQPPREQPLPPAPL 350
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 853 HAMYVSTGSLAQQYAHPNAALHPHTPHpqpsatPTGQQQSQHGGSHPAPSPVQHHQHQAAQALHLASPQQQSAIYHAGLA 932
Cdd:pfam03154 351 SMPHIKPPPTTPIPQLPNPQSHKHPPH------LSGPSPFQMNSNLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQQL 424
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 933 PTPPSMTPASnTQSPQSSFPAAQQ-TVFTIHPSHVQPAYTTPPHMAHVPqahvQSGMVPSHPTAHAPMMLMTTQPPggpq 1011
Cdd:pfam03154 425 PPPPAQPPVL-TQSQSLPPPAASHpPTSGLHQVPSQSPFPQHPFVPGGP----PPITPPSGPPTSTSSAMPGIQPP---- 495
|
410 420
....*....|....*....|
gi 1720412635 1012 AALAQSALQPIPVSTTAHFP 1031
Cdd:pfam03154 496 SSASVSSSGPVPAAVSCPLP 515
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
817-995 |
1.85e-03 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 42.38 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 817 YSPVIQGNArMMAPPAHAQPGLVSSS--AAQFGAHEQTHAMYVSTGSLAQQYAHPNAALHPHTPHP----QPSATPTGQQ 890
Cdd:PRK10263 307 YDPLLNGAP-ITEPVAVAAAATTATQswAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPviapAPEGYPQQSQ 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 891 QSQHGGSHPAP--------SPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQSSFPAAQQTVFTIH 962
Cdd:PRK10263 386 YAQPAVQYNEPlqqpvqpqQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTE 465
|
170 180 190
....*....|....*....|....*....|...
gi 1720412635 963 PSHVQPAYTTPPHMAhvPQAHVQSGMVPSHPTA 995
Cdd:PRK10263 466 QTYQQPAAQEPLYQQ--PQPVEQQPVVEPEPVV 496
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
354-523 |
2.17e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 42.14 E-value: 2.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 354 FNPNAGSDQRVVNGGPPRMsPKAQRHPRNHRVSAGRGSMSSGLEFVShNPPSEAAAPPVARTSPAGGTWSSVVSGVPRLS 433
Cdd:PRK07003 358 FEPAVTGGGAPGGGVPARV-AGAVPAPGARAAAAVGASAVPAVTAVT-GAAGAALAPKAAAAAAATRAEAPPAAPAPPAT 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 434 PKTHRPRSPRQSSIGNSPSGPVLASPQAGIIPAEAVSMPVPAASPTPASP--ASNRALTPSIEAKDSRLQDQRQNSP--A 509
Cdd:PRK07003 436 ADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPpdAAFEPAPRAAAPSAATPAAVPDARApaA 515
|
170
....*....|....
gi 1720412635 510 GSKENVKASETSPS 523
Cdd:PRK07003 516 ASREDAPAAAAPPA 529
|
|
| DUF3498 |
pfam12004 |
Domain of unknown function (DUF3498); This presumed domain is functionally uncharacterized. ... |
386-535 |
3.56e-03 |
|
Domain of unknown function (DUF3498); This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with pfam00616, pfam00168. This domain has two conserved sequence motifs: DLQ and PLSFQNP.
Pssm-ID: 463427 [Multi-domain] Cd Length: 511 Bit Score: 41.28 E-value: 3.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 386 SAGRGSMSSGLE-FVSHNPPSEAAAPPVARTSPAGGTWSSVVS--GVPR----------LSPKTHRPRSPRQSSIGnsPS 452
Cdd:pfam12004 196 PRGLGSPDSSSEtHSSFSSHSNSEDLSSAAANKKSGPSNSSYSedFARRsteftrrqlsLTELQHQPAVPRQNSAG--PQ 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 453 GPVLASPQAGIIPAEAVSMPVPAASPTPASPASNRALTPSIEAKDSRLQDQRQNSPAGSKENVKASETSPSFSKADNKGM 532
Cdd:pfam12004 274 RRIDQQGLGGPPLTRGRTPPSLLNSASYPRPSSGSLMSSSPDWPPARLRQQSSSSKGDSPETKQRTQHQQVPSPVNPSTL 353
|
...
gi 1720412635 533 SPV 535
Cdd:pfam12004 354 SPV 356
|
|
| Sm_like |
cd00600 |
Sm and related proteins; The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to ... |
92-159 |
3.82e-03 |
|
Sm and related proteins; The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Pssm-ID: 212462 [Multi-domain] Cd Length: 63 Bit Score: 36.84 E-value: 3.82e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720412635 92 LTSVVGSKCEVQVKNGGIYEGVFKTYSPKCDLVLDAAHEKSTEsssgpKREEIMESVLFKCSDFVVVQ 159
Cdd:cd00600 1 LKDFIGKTVSVELKDGRVLTGTLVAFDKYMNLVLDDVVETGRD-----GKVRVLGLVLIRGSNIVSIR 63
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
330-858 |
4.35e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 41.46 E-value: 4.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 330 QSSPRMGQPGPGSMPSRAASHTSDFNPNAGSDQRvvnGGPPRMSPKAQRHPRNHRVSAGRGSMSSGLEFVSHNPPSEAAA 409
Cdd:PHA03247 2572 RPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDR---GDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPP 2648
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 410 PPVARTSPAGGTWS-----SVVSGVPRLSPKTHRPRSPrqssIGNSPSGPV--LASPQAGIIPAEAVSMPVPAASPTPAS 482
Cdd:PHA03247 2649 PERPRDDPAPGRVSrprraRRLGRAAQASSPPQRPRRR----AARPTVGSLtsLADPPPPPPTPEPAPHALVSATPLPPG 2724
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 483 PASNRALTPSIEAkdsrlqdqrqnSPAgskenVKASETSPSFSKADNKGMSPVVSEHrkqiddlkkfkndfrlQPSSTSE 562
Cdd:PHA03247 2725 PAAARQASPALPA-----------APA-----PPAVPAGPATPGGPARPARPPTTAG----------------PPAPAPP 2772
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 563 SMDQLLSKNREGEKSRDLIKDKTEASAKDSFIDSSSSSSNCTSGSSKTNSPSISPSMLSNAEHKRGPEVTSQGVQTSSPA 642
Cdd:PHA03247 2773 AAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPL 2852
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 643 CkqekddreekkdtteqvrkSTLNPNAkEFNPRSFSQPKPSTTPTSPRPQ----AQPSPSMVGHQQPAPvytqpvcfapn 718
Cdd:PHA03247 2853 G-------------------GSVAPGG-DVRRRPPSRSPAAKPAAPARPPvrrlARPAVSRSTESFALP----------- 2901
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 719 mmyPVPVSPGVQPLYPIPMTPMPVNQAKTYRAVPNMPQQRQDqhhqstmmhpasAAGPPIVATPPAYSTQYVAYSPQQFP 798
Cdd:PHA03247 2902 ---PDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQ------------PPLAPTTDPAGAGEPSGAVPQPWLGA 2966
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 799 NQPLVQHVPHYQSQHPhvySPVIQGNARMMAPPAHAQPGLVSSSAAQFGAHEQTHAMYVS 858
Cdd:PHA03247 2967 LVPGRVAVPRFRVPQP---APSREAPASSTPPLTGHSLSRVSSWASSLALHEETDPPPVS 3023
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SM-ATX |
pfam14438 |
Ataxin 2 SM domain; This SM domain is found in Ataxin-2. |
88-161 |
5.95e-21 |
|
Ataxin 2 SM domain; This SM domain is found in Ataxin-2.
Pssm-ID: 464173 Cd Length: 78 Bit Score: 87.99 E-value: 5.95e-21
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720412635 88 MVHILTSVVGSKCEVQVKNGGIYEGVFKTYSP--KCDLVLDAAHEKSTESSSG--PKREEIMESVLFKCSDFVVVQFK 161
Cdd:pfam14438 1 LLFLLTSLVGLVVEVTTKNGEVYEGIFSTASLekDFGVVLKMARRIKKSNGSGlnPVRGEIVDTMIFPAKDIVDIEAK 78
|
|
| LsmAD |
pfam06741 |
LsmAD domain; This domain is found associated with Lsm domain. |
228-289 |
8.34e-16 |
|
LsmAD domain; This domain is found associated with Lsm domain.
Pssm-ID: 461998 [Multi-domain] Cd Length: 65 Bit Score: 72.60 E-value: 8.34e-16
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720412635 228 YGVVSTYDSSLssYTVPLERdNSEEFLKREARANQLAEEIESSAQYKARVALENDDR------SEEEK 289
Cdd:pfam06741 1 FGVKSTYDENL--YTTKLDR-SSPDYKEREAEAERIAREIEGSASTNAHVAEERGLDvddsglDEEDK 65
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
681-869 |
1.99e-07 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 55.43 E-value: 1.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 681 KPSTTPTSPRPQAQPSPSM-----------VGHQQPAPVyTQPVCFAPNMMYPVPVSPGVQPLYPIPMTPMPVNQAKTYR 749
Cdd:pfam09770 169 KAAAPAPAPQPAAQPASLPapsrkmmsleeVEAAMRAQA-KKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQ 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 750 AVPNMPQQRQDQHHQ-STMMHPASAAGPPIVATPPaystqyvAYSPQQFPNQPLVQHVPHYQSQHPHVYSPVIQGNARMM 828
Cdd:pfam09770 248 QQPQQPQQHPGQGHPvTILQRPQSPQPDPAQPSIQ-------PQAQQFHQQPPPVPVQPTQILQNPNRLSAARVGYPQNP 320
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1720412635 829 APPAHAQPGlvsssaaqfgahEQTHAMYVSTGSLAQQYAHP 869
Cdd:pfam09770 321 QPGVQPAPA------------HQAHRQQGSFGRQAPIITHP 349
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
658-904 |
2.18e-07 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 55.04 E-value: 2.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 658 EQVRKSTLNPNAKefnprsfSQPKPSTTPTSPRPQAQPSPsmvghqQPAPVYTQPVCFA-PNMMYPVPVSP--------G 728
Cdd:pfam09770 98 EQVRFNRQQPAAR-------AAQSSAQPPASSLPQYQYAS------QQSQQPSKPVRTGyEKYKEPEPIPDlqvdaslwG 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 729 VQPLYPIPMTPMPVNQAktyravpnmpQQRQDQHHQSTMM-------------HPASAAGPPIVATPPAYSTQYVAYSPQ 795
Cdd:pfam09770 165 VAPKKAAAPAPAPQPAA----------QPASLPAPSRKMMsleeveaamraqaKKPAQQPAPAPAQPPAAPPAQQAQQQQ 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 796 QFPNQPLVQHVPHYQSQHPhvysPVIQGNARMMA-----PPAHAQPGLVSSSAAQFGAHEQTHAMYVSTGSLAQQYAHPN 870
Cdd:pfam09770 235 QFPPQIQQQQQPQQQPQQP----QQHPGQGHPVTilqrpQSPQPDPAQPSIQPQAQQFHQQPPPVPVQPTQILQNPNRLS 310
|
250 260 270
....*....|....*....|....*....|....*
gi 1720412635 871 AALHPHTPHPQPSATPT-GQQQSQHGGSHPAPSPV 904
Cdd:pfam09770 311 AARVGYPQNPQPGVQPApAHQAHRQQGSFGRQAPI 345
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
680-978 |
4.10e-07 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 54.56 E-value: 4.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 680 PKPSTTPTSPRPQAQPSP--SMVGHQQPAPVYTQPVCFAPNMMYPVPVSPGVQ------PLYPIPMTPMPVNQAKTYRAV 751
Cdd:PHA03247 2674 AQASSPPQRPRRRAARPTvgSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAaarqasPALPAAPAPPAVPAGPATPGG 2753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 752 PNMPQQRQDQHHQSTMMHPAS-AAGPPIVATPPAYSTQYVAYSPQQFPNQPLVQHVPhyqSQHPHVYSPVIQGNARMMAP 830
Cdd:PHA03247 2754 PARPARPPTTAGPPAPAPPAApAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAA---VLAPAAALPPAASPAGPLPP 2830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 831 PAHAQPGLVSSSAAQFGAHEQTHAMYVSTGSLAQQYAHPNAALHPHTPH-------PQPSATPTGQQQSQHGGSHPAPSP 903
Cdd:PHA03247 2831 PTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPArppvrrlARPAVSRSTESFALPPDQPERPPQ 2910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 904 VQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQS-PQSSFPAAQ-------------QTVFTIHPSHVQPA 969
Cdd:PHA03247 2911 PQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGePSGAVPQPWlgalvpgrvavprFRVPQPAPSREAPA 2990
|
....*....
gi 1720412635 970 YTTPPHMAH 978
Cdd:PHA03247 2991 SSTPPLTGH 2999
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
674-1028 |
1.20e-06 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 52.68 E-value: 1.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 674 PRSFSQPKPSTTPTSPRPQAQPSPSMVGHQQPAPvytqpvcfAPNMMYPVPVSPGVQPLYPIPMTPMPVNQAKTYRAVPN 753
Cdd:PRK07764 400 SAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAP--------APAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPA 471
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 754 MPQQRQDQHHQSTMMHPASAAGPPIVATPPAYSTQYVAYSPQQFPNQpLVQHVPHYQ-------SQHPHVYSpvIQGN-- 824
Cdd:PRK07764 472 AAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRERWPE-ILAAVPKRSrktwailLPEATVLG--VRGDtl 548
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 825 ---------ARMMAPPAHAQPgLVSSSAAQFGAHEQTHAmYVSTGSLAQQYAHPNAAL----HPHTPHPQPSATPTGQQQ 891
Cdd:PRK07764 549 vlgfstgglARRFASPGNAEV-LVTALAEELGGDWQVEA-VVGPAPGAAGGEGPPAPAssgpPEEAARPAAPAAPAAPAA 626
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 892 SQHGGSHPAPSPVQHHQHQAAQALHL----------ASPQQQSAIYHAGLAPTPPSMTPASNTQSPQSSFPAAQQTVFTI 961
Cdd:PRK07764 627 PAPAGAAAAPAEASAAPAPGVAAPEHhpkhvavpdaSDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA 706
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720412635 962 HPSHVQPAYTTPPHMAHVPQA-----HVQSGMVPSHPTAHAPMMLMTT--QPPGGPQAALAQSALQPIPVSTTA 1028
Cdd:PRK07764 707 ATPPAGQADDPAAQPPQAAQGasapsPAADDPVPLPPEPDDPPDPAGApaQPPPPPAPAPAAAPAAAPPPSPPS 780
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
681-1023 |
1.58e-06 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 52.63 E-value: 1.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 681 KPSTTPTSPRPQAQPSPSMVGHQQPAPVYTQPVCFAPNMMYPVPVSPGVQPLYPIPMTPMPVNQAKTYRAVPNMPQQRQd 760
Cdd:PHA03247 2588 RPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRR- 2666
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 761 qhhQSTMMHPASAAGPPIVATPPAYSTQYVAYSPQQFPNQPLVQHVPHYQSQHPHVYSPVIQGNARMMAPPAHAQPglvS 840
Cdd:PHA03247 2667 ---ARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAP---A 2740
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 841 SSAAQFGAHEQTHAMYVSTGSLAQQYAHPNAALHPHTPHPQPSATPTGQQQSQHGGSHPAPSPVQHHQHQAAQALHLASP 920
Cdd:PHA03247 2741 PPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPP 2820
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 921 QQQSaiyhAGLAPTPPSMTPASnTQSPQSSFPAAQQTVFTIHP----SHVQPAYTTPPHMAHVPQAHVQSGMVPSHPTAH 996
Cdd:PHA03247 2821 AASP----AGPLPPPTSAQPTA-PPPPPGPPPPSLPLGGSVAPggdvRRRPPSRSPAAKPAAPARPPVRRLARPAVSRST 2895
|
330 340
....*....|....*....|....*..
gi 1720412635 997 APMMLMTTQPPGGPQAALAQSALQPIP 1023
Cdd:PHA03247 2896 ESFALPPDQPERPPQPQAPPPPQPQPQ 2922
|
|
| PABP-1234 |
TIGR01628 |
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
652-817 |
6.53e-06 |
|
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.
Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 50.19 E-value: 6.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 652 EKKDTteqvRKSTLNpnaKEFNPRSFSQPKPSTTptSPRPQAQPSPSMVGHQQPAPVYTQPVCFAPNMMYPVPVSPGVQP 731
Cdd:TIGR01628 362 QRKEQ----RRAHLQ---DQFMQLQPRMRQLPMG--SPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPTPMGPGGPL 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 732 LypiPMTPMPVNQAktyRAVPNMPQQRQDQHHQSTMMHPASAAGPPIVATPPAYSTQYVAYSPQQFPNQPLVQHVPHYQS 811
Cdd:TIGR01628 433 R---PNGLAPMNAV---RAPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQDLPQPQSTASQGGQNKKLAQVLASATPQMQK 506
|
170
....*....|..
gi 1720412635 812 Q------HPHVY 817
Cdd:TIGR01628 507 QvlgerlFPLVE 518
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
622-1031 |
1.85e-05 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 49.00 E-value: 1.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 622 NAEHKRGPEVTSQGVQTSSPACKQEKDDREEKKDTTEQVRKSTLNPNAKEFNPRSFSQPKPSTTPTSPRPQAQPSPSMVG 701
Cdd:pfam03154 127 NDEGSSDPKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQILQTQPPVLQAQSGAASPPSPPPPGTTQAATAGPTPSAPSV 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 702 HQQPAPVYTQPVCFAPNMMYPVPVSPGVQPLYP-------IPMTPMPvnqaktyraVPNMPQQRQDQHHQSTMMHPASAA 774
Cdd:pfam03154 207 PPQGSPATSQPPNQTQSTAAPHTLIQQTPTLHPqrlpsphPPLQPMT---------QPPPPSQVSPQPLPQPSLHGQMPP 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 775 GPPIVATPPaystqyvAYSPQQFPNQPLVQHVPHYQSQHPHVYSPVIQGNARMMA--PPAHAQPGLVSSSAAQFGAHEQT 852
Cdd:pfam03154 278 MPHSLQTGP-------SHMQHPVPPQPFPLTPQSSQSQVPPGPSPAAPGQSQQRIhtPPSQSQLQSQQPPREQPLPPAPL 350
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 853 HAMYVSTGSLAQQYAHPNAALHPHTPHpqpsatPTGQQQSQHGGSHPAPSPVQHHQHQAAQALHLASPQQQSAIYHAGLA 932
Cdd:pfam03154 351 SMPHIKPPPTTPIPQLPNPQSHKHPPH------LSGPSPFQMNSNLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQQL 424
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 933 PTPPSMTPASnTQSPQSSFPAAQQ-TVFTIHPSHVQPAYTTPPHMAHVPqahvQSGMVPSHPTAHAPMMLMTTQPPggpq 1011
Cdd:pfam03154 425 PPPPAQPPVL-TQSQSLPPPAASHpPTSGLHQVPSQSPFPQHPFVPGGP----PPITPPSGPPTSTSSAMPGIQPP---- 495
|
410 420
....*....|....*....|
gi 1720412635 1012 AALAQSALQPIPVSTTAHFP 1031
Cdd:pfam03154 496 SSASVSSSGPVPAAVSCPLP 515
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
759-1005 |
5.52e-05 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 47.34 E-value: 5.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 759 QDQHHQSTMMHPASAAGPPIVATPPAYSTQY-VAYSPQQFPNQPLVQHVPHYQSQHP----HVySPVIQGNA--RMMAPP 831
Cdd:pfam09770 96 EEEQVRFNRQQPAARAAQSSAQPPASSLPQYqYASQQSQQPSKPVRTGYEKYKEPEPipdlQV-DASLWGVApkKAAAPA 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 832 AHAQPGLVSSSAAQFG----------------AHEQTHAMYVSTGSLAQQYAHPNAALHPHTPHPQPSATPTGQQQSQHG 895
Cdd:pfam09770 175 PAPQPAAQPASLPAPSrkmmsleeveaamraqAKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQ 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 896 GSHPAPSPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPqSSFPAAQQTVFTIHPSHVQPAyttPPH 975
Cdd:pfam09770 255 QHPGQGHPVTILQRPQSPQPDPAQPSIQPQAQQFHQQPPPVPVQPTQILQNP-NRLSAARVGYPQNPQPGVQPA---PAH 330
|
250 260 270
....*....|....*....|....*....|
gi 1720412635 976 MAHvPQAHVQSGMVPSHpTAHAPMMLMTTQ 1005
Cdd:pfam09770 331 QAH-RQQGSFGRQAPII-THPQQLAQLSEE 358
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
678-948 |
2.78e-04 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 45.08 E-value: 2.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 678 SQPKPSTTPTSPRPQAQPSPsmvGHQQPAPVYT-QPVCFAPNMMYPVPVSPGVQPLypipMTPMPVNQAKTYRAVPNMPQ 756
Cdd:PRK10263 345 PVASVDVPPAQPTVAWQPVP---GPQTGEPVIApAPEGYPQQSQYAQPAVQYNEPL----QQPVQPQQPYYAPAAEQPAQ 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 757 QRQDQHHQSTmmhPASAAGPPIVATPPAYSTQYVAYspqqfPNQPLVQHVPHYQSQHPHVySPVIQgNARMMAPPAHAQP 836
Cdd:PRK10263 418 QPYYAPAPEQ---PAQQPYYAPAPEQPVAGNAWQAE-----EQQSTFAPQSTYQTEQTYQ-QPAAQ-EPLYQQPQPVEQQ 487
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 837 GLVSSSAAQFGAHEQTHAMYVSTgSLAQQYAHPNAALHP-HTPHPQPSATPTGQQQSQHGGSHPAPSPVQHHQHQAAQAL 915
Cdd:PRK10263 488 PVVEPEPVVEETKPARPPLYYFE-EVEEKRAREREQLAAwYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLAS 566
|
250 260 270
....*....|....*....|....*....|....*.
gi 1720412635 916 HLaspqqQSAIYHAGLAPTP--PSMTPASN-TQSPQ 948
Cdd:PRK10263 567 GV-----KKATLATGAAATVaaPVFSLANSgGPRPQ 597
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
697-921 |
4.21e-04 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 44.69 E-value: 4.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 697 PSMVGHQQPAPVYTQPVCFAPNMMYPVPVSPgVQPLYPIPMTPMPVNQaktyravPNMPQQRQdqhhqstmmhPASAAGP 776
Cdd:PRK10263 309 PLLNGAPITEPVAVAAAATTATQSWAAPVEP-VTQTPPVASVDVPPAQ-------PTVAWQPV----------PGPQTGE 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 777 PIVATPPAystqyvAYSPQQFPNQPLVQHVPHYQSQHPHvyspviqgnarmmAPPAHAQPGLVSSSAAQFGAHEQTHAMY 856
Cdd:PRK10263 371 PVIAPAPE------GYPQQSQYAQPAVQYNEPLQQPVQP-------------QQPYYAPAAEQPAQQPYYAPAPEQPAQQ 431
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720412635 857 vstGSLAQQYAHPNAALHPHTPHPQPSATPTGQQQSQHGGSHPAPSPVQHHQHQAAQALHLASPQ 921
Cdd:PRK10263 432 ---PYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPE 493
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
817-995 |
1.85e-03 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 42.38 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 817 YSPVIQGNArMMAPPAHAQPGLVSSS--AAQFGAHEQTHAMYVSTGSLAQQYAHPNAALHPHTPHP----QPSATPTGQQ 890
Cdd:PRK10263 307 YDPLLNGAP-ITEPVAVAAAATTATQswAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPviapAPEGYPQQSQ 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 891 QSQHGGSHPAP--------SPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQSSFPAAQQTVFTIH 962
Cdd:PRK10263 386 YAQPAVQYNEPlqqpvqpqQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTE 465
|
170 180 190
....*....|....*....|....*....|...
gi 1720412635 963 PSHVQPAYTTPPHMAhvPQAHVQSGMVPSHPTA 995
Cdd:PRK10263 466 QTYQQPAAQEPLYQQ--PQPVEQQPVVEPEPVV 496
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
354-523 |
2.17e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 42.14 E-value: 2.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 354 FNPNAGSDQRVVNGGPPRMsPKAQRHPRNHRVSAGRGSMSSGLEFVShNPPSEAAAPPVARTSPAGGTWSSVVSGVPRLS 433
Cdd:PRK07003 358 FEPAVTGGGAPGGGVPARV-AGAVPAPGARAAAAVGASAVPAVTAVT-GAAGAALAPKAAAAAAATRAEAPPAAPAPPAT 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 434 PKTHRPRSPRQSSIGNSPSGPVLASPQAGIIPAEAVSMPVPAASPTPASP--ASNRALTPSIEAKDSRLQDQRQNSP--A 509
Cdd:PRK07003 436 ADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPpdAAFEPAPRAAAPSAATPAAVPDARApaA 515
|
170
....*....|....
gi 1720412635 510 GSKENVKASETSPS 523
Cdd:PRK07003 516 ASREDAPAAAAPPA 529
|
|
| DUF3498 |
pfam12004 |
Domain of unknown function (DUF3498); This presumed domain is functionally uncharacterized. ... |
386-535 |
3.56e-03 |
|
Domain of unknown function (DUF3498); This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with pfam00616, pfam00168. This domain has two conserved sequence motifs: DLQ and PLSFQNP.
Pssm-ID: 463427 [Multi-domain] Cd Length: 511 Bit Score: 41.28 E-value: 3.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 386 SAGRGSMSSGLE-FVSHNPPSEAAAPPVARTSPAGGTWSSVVS--GVPR----------LSPKTHRPRSPRQSSIGnsPS 452
Cdd:pfam12004 196 PRGLGSPDSSSEtHSSFSSHSNSEDLSSAAANKKSGPSNSSYSedFARRsteftrrqlsLTELQHQPAVPRQNSAG--PQ 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 453 GPVLASPQAGIIPAEAVSMPVPAASPTPASPASNRALTPSIEAKDSRLQDQRQNSPAGSKENVKASETSPSFSKADNKGM 532
Cdd:pfam12004 274 RRIDQQGLGGPPLTRGRTPPSLLNSASYPRPSSGSLMSSSPDWPPARLRQQSSSSKGDSPETKQRTQHQQVPSPVNPSTL 353
|
...
gi 1720412635 533 SPV 535
Cdd:pfam12004 354 SPV 356
|
|
| PAM2 |
pfam07145 |
Ataxin-2 C-terminal region; The PABP-interacting motif PAM2 has been identified in various ... |
661-676 |
3.73e-03 |
|
Ataxin-2 C-terminal region; The PABP-interacting motif PAM2 has been identified in various eukaryotic proteins as an important binding site for pfam00658. It has been found in a wide range of eukaryotic proteins. Strikingly, this motif appears to occur solely outside of globular domains.
Pssm-ID: 429316 Cd Length: 17 Bit Score: 35.67 E-value: 3.73e-03
|
| Sm_like |
cd00600 |
Sm and related proteins; The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to ... |
92-159 |
3.82e-03 |
|
Sm and related proteins; The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Pssm-ID: 212462 [Multi-domain] Cd Length: 63 Bit Score: 36.84 E-value: 3.82e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720412635 92 LTSVVGSKCEVQVKNGGIYEGVFKTYSPKCDLVLDAAHEKSTEsssgpKREEIMESVLFKCSDFVVVQ 159
Cdd:cd00600 1 LKDFIGKTVSVELKDGRVLTGTLVAFDKYMNLVLDDVVETGRD-----GKVRVLGLVLIRGSNIVSIR 63
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
330-858 |
4.35e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 41.46 E-value: 4.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 330 QSSPRMGQPGPGSMPSRAASHTSDFNPNAGSDQRvvnGGPPRMSPKAQRHPRNHRVSAGRGSMSSGLEFVSHNPPSEAAA 409
Cdd:PHA03247 2572 RPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDR---GDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPP 2648
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 410 PPVARTSPAGGTWS-----SVVSGVPRLSPKTHRPRSPrqssIGNSPSGPV--LASPQAGIIPAEAVSMPVPAASPTPAS 482
Cdd:PHA03247 2649 PERPRDDPAPGRVSrprraRRLGRAAQASSPPQRPRRR----AARPTVGSLtsLADPPPPPPTPEPAPHALVSATPLPPG 2724
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 483 PASNRALTPSIEAkdsrlqdqrqnSPAgskenVKASETSPSFSKADNKGMSPVVSEHrkqiddlkkfkndfrlQPSSTSE 562
Cdd:PHA03247 2725 PAAARQASPALPA-----------APA-----PPAVPAGPATPGGPARPARPPTTAG----------------PPAPAPP 2772
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 563 SMDQLLSKNREGEKSRDLIKDKTEASAKDSFIDSSSSSSNCTSGSSKTNSPSISPSMLSNAEHKRGPEVTSQGVQTSSPA 642
Cdd:PHA03247 2773 AAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPL 2852
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 643 CkqekddreekkdtteqvrkSTLNPNAkEFNPRSFSQPKPSTTPTSPRPQ----AQPSPSMVGHQQPAPvytqpvcfapn 718
Cdd:PHA03247 2853 G-------------------GSVAPGG-DVRRRPPSRSPAAKPAAPARPPvrrlARPAVSRSTESFALP----------- 2901
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 719 mmyPVPVSPGVQPLYPIPMTPMPVNQAKTYRAVPNMPQQRQDqhhqstmmhpasAAGPPIVATPPAYSTQYVAYSPQQFP 798
Cdd:PHA03247 2902 ---PDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQ------------PPLAPTTDPAGAGEPSGAVPQPWLGA 2966
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 799 NQPLVQHVPHYQSQHPhvySPVIQGNARMMAPPAHAQPGLVSSSAAQFGAHEQTHAMYVS 858
Cdd:PHA03247 2967 LVPGRVAVPRFRVPQP---APSREAPASSTPPLTGHSLSRVSSWASSLALHEETDPPPVS 3023
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
611-741 |
5.59e-03 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 40.84 E-value: 5.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 611 NSPSISPSMLSNAEHKRGPEVTSQGVQTSSPACKQEKDDREEKKDTTEQVRKSTLNPNAKEFNPRSFSQP-KPSTTPTSP 689
Cdd:PRK10263 741 HEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPvAPQPQYQQP 820
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1720412635 690 RPQAQPSPSMVGHQQPAPVYTQPVCFAPNMMYPVPVSPGVQPLYPIP----MTPMP 741
Cdd:PRK10263 821 QQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPsldlLTPPP 876
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
328-904 |
6.36e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 40.69 E-value: 6.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 328 GRQSSPRMGQPGPGSMPSraASHTSDFNPNAGSDQRVVNGGPPRMSPKAQRHPRNH----RVSAGRGSMSSGLEFVSHNP 403
Cdd:PHA03247 2602 VDDRGDPRGPAPPSPLPP--DTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDpapgRVSRPRRARRLGRAAQASSP 2679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 404 PsEAAAPPVARtsPAGGTWSSVVSgvPRLSPKTHRPRSPRQSSIGNSPSGPVLASPQAGIIPAEAVSMPVPAASPTPASP 483
Cdd:PHA03247 2680 P-QRPRRRAAR--PTVGSLTSLAD--PPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGP 2754
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 484 AsnraltpsieakdsrlqdqRQNSPAGSkenvkASETSPSFSKADNKGMSPVVSehrkqiddlkkfkndfRLQPSSTSES 563
Cdd:PHA03247 2755 A-------------------RPARPPTT-----AGPPAPAPPAAPAAGPPRRLT----------------RPAVASLSES 2794
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 564 MDQLLSKNREGEKSRDLIKDKTEASAKDSFIDSSSSSSNCTSGSSKTNSPSISPSMLSNAEHKRGPEVTSQGVQTSSPAc 643
Cdd:PHA03247 2795 RESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAA- 2873
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 644 kqekddreeKKDTTEQVRKSTLNPNAKEFNPRSFSQPkpsttPTSPRPQAQPSPsmvghqqPAPVYTQPVCFAPNMMYPV 723
Cdd:PHA03247 2874 ---------KPAAPARPPVRRLARPAVSRSTESFALP-----PDQPERPPQPQA-------PPPPQPQPQPPPPPQPQPP 2932
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 724 PVSPGvQPLYPIPMTPMPVNQAKTYRAVPNmpqqrqdqhHQSTMMHPASAAGPPIVATPPAYSTQYVAYSPQQFPNQPLV 803
Cdd:PHA03247 2933 PPPPP-RPQPPLAPTTDPAGAGEPSGAVPQ---------PWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLS 3002
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 804 QHVPHYQSQHPHVYSPviqgnarmmAPPAHAQPGLVSSSAAQFGAHEQTHAMYVSTGSLAQQYAHPNAALHPHTPHPQPS 883
Cdd:PHA03247 3003 RVSSWASSLALHEETD---------PPPVSLKQTLWPPDDTEDSDADSLFDSDSERSDLEALDPLPPEPHDPFAHEPDPA 3073
|
570 580
....*....|....*....|.
gi 1720412635 884 ATPTGQQQSQHggSHPAPSPV 904
Cdd:PHA03247 3074 TPEAGARESPS--SQFGPPPL 3092
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
653-763 |
6.92e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 40.53 E-value: 6.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412635 653 KKDTTEQVrkSTLNPNAKEFN---PRSFSQPKPSTTPtSPRPQAQPSPSMVGHQQPAPVYTQPVCFAPNMMYPVPVSpgv 729
Cdd:PRK14971 380 KPVFTQPA--AAPQPSAAAAAspsPSQSSAAAQPSAP-QSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFK--- 453
|
90 100 110
....*....|....*....|....*....|....
gi 1720412635 730 qPLYPIPMTPMPVNQAKTYRAVPNMPQQRQDQHH 763
Cdd:PRK14971 454 -EEKKIPVSKVSSLGPSTLRPIQEKAEQATGNIK 486
|
|
| |
