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Conserved domains on  [gi|1720400877|ref|XP_030107980|]
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uncharacterized protein C9orf50 homolog isoform X10 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4685 super family cl24340
Domain of unknown function (DUF4685); This domain family is found in eukaryotes, and is ...
 11-116 5.38e-16

Domain of unknown function (DUF4685); This domain family is found in eukaryotes, and is typically between 106 and 131 amino acids in length. There are two conserved sequence motifs: SGE and VRF.


The actual alignment was detected with superfamily member pfam15737:

Pssm-ID: 464834 [Multi-domain]  Cd Length: 117  Bit Score: 71.34  E-value: 5.38e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400877  11 GRRKVTSGTLRtvcpSSHGLSGTIeADSYRDSSKLEALLPPGIPSTGCSCSPPhlftpvlrkgPAGEGSRPRKRYCPFRV 90
Cdd:pfam15737  25 ARMKARTGPLR----ADHDIVPTV-AQGSRDGQGSPAPKPRATSACRDSLSDS----------SSGEGQGPRRGMSPSRV 89

                          90       100
                  ....*....|....*....|....*.
gi 1720400877  91 RFADETLQDTALRYWERNRAVRQNIF 116
Cdd:pfam15737  90 RFEDESARDAELRYWERLQQRQQQVL 115
 
Name Accession Description Interval E-value
DUF4685 pfam15737
Domain of unknown function (DUF4685); This domain family is found in eukaryotes, and is ...
 11-116 5.38e-16

Domain of unknown function (DUF4685); This domain family is found in eukaryotes, and is typically between 106 and 131 amino acids in length. There are two conserved sequence motifs: SGE and VRF.


Pssm-ID: 464834 [Multi-domain]  Cd Length: 117  Bit Score: 71.34  E-value: 5.38e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400877  11 GRRKVTSGTLRtvcpSSHGLSGTIeADSYRDSSKLEALLPPGIPSTGCSCSPPhlftpvlrkgPAGEGSRPRKRYCPFRV 90
Cdd:pfam15737  25 ARMKARTGPLR----ADHDIVPTV-AQGSRDGQGSPAPKPRATSACRDSLSDS----------SSGEGQGPRRGMSPSRV 89

                          90       100
                  ....*....|....*....|....*.
gi 1720400877  91 RFADETLQDTALRYWERNRAVRQNIF 116
Cdd:pfam15737  90 RFEDESARDAELRYWERLQQRQQQVL 115
 
Name Accession Description Interval E-value
DUF4685 pfam15737
Domain of unknown function (DUF4685); This domain family is found in eukaryotes, and is ...
 11-116 5.38e-16

Domain of unknown function (DUF4685); This domain family is found in eukaryotes, and is typically between 106 and 131 amino acids in length. There are two conserved sequence motifs: SGE and VRF.


Pssm-ID: 464834 [Multi-domain]  Cd Length: 117  Bit Score: 71.34  E-value: 5.38e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400877  11 GRRKVTSGTLRtvcpSSHGLSGTIeADSYRDSSKLEALLPPGIPSTGCSCSPPhlftpvlrkgPAGEGSRPRKRYCPFRV 90
Cdd:pfam15737  25 ARMKARTGPLR----ADHDIVPTV-AQGSRDGQGSPAPKPRATSACRDSLSDS----------SSGEGQGPRRGMSPSRV 89

                          90       100
                  ....*....|....*....|....*.
gi 1720400877  91 RFADETLQDTALRYWERNRAVRQNIF 116
Cdd:pfam15737  90 RFEDESARDAELRYWERLQQRQQQVL 115
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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