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Conserved domains on  [gi|1720394333|ref|XP_030106543|]
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RRP12-like protein isoform X1 [Mus musculus]

Protein Classification

RRP12 family protein( domain architecture ID 4248)

RRP12 family protein similar to Saccharomyces cerevisiae ribosomal RNA-processing protein 12 (RRP12) that is required for nuclear export of both pre-40S and pre-60S ribosomal subunits

Gene Ontology:  GO:0006364|GO:0003723

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NUC173 super family cl06969
NUC173 domain; This is the central domain of of novel family of hypothetical nucleolar ...
 21-92 1.06e-31

NUC173 domain; This is the central domain of of novel family of hypothetical nucleolar proteins.


The actual alignment was detected with superfamily member pfam08161:

Pssm-ID: 462386  Cd Length: 202  Bit Score: 122.25  E-value: 1.06e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720394333  21 AMDLAQAGSTVESKIYDTLQWQIWTLLPGFCTRPTDVAASFKGLARTLGTAINERPDLRVTVCQALRTLITK 92
Cdd:pfam08161 130 AKELEEAGKSVEAKIFETLVDQIWSLLPGFCNLPTDLKESFKSFAKLLGNLLYEQPELRPTICQALRTLVES 201
 
Name Accession Description Interval E-value
NUC173 pfam08161
NUC173 domain; This is the central domain of of novel family of hypothetical nucleolar ...
 21-92 1.06e-31

NUC173 domain; This is the central domain of of novel family of hypothetical nucleolar proteins.


Pssm-ID: 462386  Cd Length: 202  Bit Score: 122.25  E-value: 1.06e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720394333  21 AMDLAQAGSTVESKIYDTLQWQIWTLLPGFCTRPTDVAASFKGLARTLGTAINERPDLRVTVCQALRTLITK 92
Cdd:pfam08161 130 AKELEEAGKSVEAKIFETLVDQIWSLLPGFCNLPTDLKESFKSFAKLLGNLLYEQPELRPTICQALRTLVES 201
 
Name Accession Description Interval E-value
NUC173 pfam08161
NUC173 domain; This is the central domain of of novel family of hypothetical nucleolar ...
 21-92 1.06e-31

NUC173 domain; This is the central domain of of novel family of hypothetical nucleolar proteins.


Pssm-ID: 462386  Cd Length: 202  Bit Score: 122.25  E-value: 1.06e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720394333  21 AMDLAQAGSTVESKIYDTLQWQIWTLLPGFCTRPTDVAASFKGLARTLGTAINERPDLRVTVCQALRTLITK 92
Cdd:pfam08161 130 AKELEEAGKSVEAKIFETLVDQIWSLLPGFCNLPTDLKESFKSFAKLLGNLLYEQPELRPTICQALRTLVES 201
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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