NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1720397337|ref|XP_030103527|]
View 

centrosome-associated protein CEP250 isoform X3 [Mus musculus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Smc super family cl34174
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 284-861 1.70e-23

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 109.26  E-value: 1.70e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  284 LQGEVDSLSRERELLQKARgELQQQLEVLEQEAWRLRRmnmelqlqgDSAQGEKLEQQEELHLAVRERERLQETLVGLEA 363
Cdd:COG1196    198 LERQLEPLERQAEKAERYR-ELKEELKELEAELLLLKL---------RELEAELEELEAELEELEAELEELEAELAELEA 267

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  364 kqseslsELLTLREALESSRLEGELLKQERVEVAAALARAEQSIVELSGSENSLKAEVADLRAAAVKLGALNEALALDKV 443
Cdd:COG1196    268 -------ELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELE 340

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  444 ELNQQLLQLEQENQSLCSRVEAAEQLRSALQVDLAEAERRREALWEKKTQLETQLQKAEEAGAELQAELRGTREEKEELK 523
Cdd:COG1196    341 ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLE 420

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  524 DKLSEAHHQQETATAHLEQLHQDAERQEETLARAVQEKEALVRERAALEVRLQAVERDRQDLTEHVLGLRSAKEQLESNl 603
Cdd:COG1196    421 EELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEA- 499

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  604 fEAQQQNSVIQVTKGQLEVQIQTIIQAKEVIQGEVKCLKLELDAERTRAEQ----EWDAVARQLAQAEQEGQAS------ 673
Cdd:COG1196    500 -EADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQnivvEDDEVAAAAIEYLKAAKAGratflp 578

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  674 LERQKVAHEEEVNRLQEKWEKERSWLQQELDKTLETLERERAELETKLREQQTEMEAIR-----AQREEERSQADSALYQ 748
Cdd:COG1196    579 LDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRravtlAGRLREVTLEGEGGSA 658

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  749 MQLETEKERVSLLETLLRTQKELADASQQLERLRQDMKIQKLKEQETTGMLQAQLQETQQELKEAAQQHRDDLAAfQKDK 828
Cdd:COG1196    659 GGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAE-REEL 737

                          570       580       590
                   ....*....|....*....|....*....|...
gi 1720397337  829 LDLQKQVEDLMSQLVAHDDSQRLVKEEIEEKVK 861
Cdd:COG1196    738 LEELLEEEELLEEEALEELPEPPDLEELERELE 770
Smc super family cl34174
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 1609-2126 2.19e-22

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 105.40  E-value: 2.19e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1609 QEAKEQGELREQVLQG-QLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHRE 1687
Cdd:COG1196    216 RELKEELKELEAELLLlKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1688 QVRRLQEELEVEGRQVRALEEVLGDLRAESREHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALR 1767
Cdd:COG1196    296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1768 AENQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLEEALRiREGEI 1847
Cdd:COG1196    376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE-EEAEL 454

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1848 QAQALQHHEVTQHLQQELCQKKEELRQLLEKAGARRSQENGIQEKQSLEQERQEETRRLLESLKELQLTVAqreeeilmL 1927
Cdd:COG1196    455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGA--------V 526

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1928 REASSPRHRALPAEKPALQPLPAQQELERLQTALRQTEAREIEWREKAQDLALSLAQSKASISSLQEITMFLQASVLERE 2007
Cdd:COG1196    527 AVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVAS 606

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 2008 SEQQRLQEELVLSRQALEEQQ-SGGPHSTSRADQGPKVGQGSQSGEVETEPSPGVEEKERLTQRLERLQQAVAELEVDRS 2086
Cdd:COG1196    607 DLREADARYYVLGDTLLGRTLvAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAE 686

                          490       500       510       520
                   ....*....|....*....|....*....|....*....|
gi 1720397337 2087 KLQCHNAQLRTALEQVERERRKLKRDSVRASRAGSLEARE 2126
Cdd:COG1196    687 RLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEAL 726
SMC_prok_B super family cl37069
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 1076-1878 2.58e-19

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


The actual alignment was detected with superfamily member TIGR02168:

Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 95.51  E-value: 2.58e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1076 ARQARDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDLHETAASLQSRLRQAEL 1155
Cdd:TIGR02168  237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLER 316

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1156 QKMEAQNDRELLQASKEKLSAQVEHLQAcvaeaqaqadAAAVLEEDLRTARSALKLKNEELESERERAQALQEQGELKVA 1235
Cdd:TIGR02168  317 QLEELEAQLEELESKLDELAEELAELEE----------KLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS 386

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1236 QGKALQENLALLAQTLSNREREVETLQAEVQELekQREMQKAALELLSLDLKKRSREVDLQQEQIQELEQCRSVLEHLPM 1315
Cdd:TIGR02168  387 KVAQLELQIASLNNEIERLEARLERLEDRRERL--QQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALE 464

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1316 AVQEREQKLSVQRDQIRELENDREAQRSVLEHQLLDLE----------QKAQVIESQRGQIQDL---KKQLGTLECLALE 1382
Cdd:TIGR02168  465 ELREELEEAEQALDAAERELAQLQARLDSLERLQENLEgfsegvkallKNQSGLSGILGVLSELisvDEGYEAAIEAALG 544

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1383 LEESHHKVESQQKMITELEGQREMQRVALTHLTLDLEeRSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDE 1462
Cdd:TIGR02168  545 GRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSI-KGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLG 623

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1463 LQKQQEQLAQALERKGQELvlQKERIQVLEDQRTLQTKILEEDLEQIKHSLRERSQELASQWQLVHERADDgkspskgqr 1542
Cdd:TIGR02168  624 GVLVVDDLDNALELAKKLR--PGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEK--------- 692

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1543 gslehlkliLRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHL-QEAKEQGELREQ- 1620
Cdd:TIGR02168  693 ---------IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIaQLSKELTELEAEi 763

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1621 -VLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELEVE 1699
Cdd:TIGR02168  764 eELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDL 843

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1700 GRQVRALEEVLGDLRAESREHEKAVLALQqrcaEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQYSRRQEEA 1779
Cdd:TIGR02168  844 EEQIEELSEDIESLAAEIEELEELIEELE----SELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEE 919

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1780 AVSQAEALQEALSKAQAALQEKEQSLLEQAELS-HTLEASTAALQATLDTCQASARQLEEALrIREGEIQAQALQHHEVT 1858
Cdd:TIGR02168  920 LREKLAQLELRLEGLEVRIDNLQERLSEEYSLTlEEAEALENKIEDDEEEARRRLKRLENKI-KELGPVNLAAIEEYEEL 998

                          810       820
                   ....*....|....*....|
gi 1720397337 1859 QHLQQELCQKKEELRQLLEK 1878
Cdd:TIGR02168  999 KERYDFLTAQKEDLTEAKET 1018
EnvC super family cl34844
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 766-1005 2.62e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG4942:

Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 48.99  E-value: 2.62e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  766 RTQKELADASQQLERLRQDMKIQKLKEQEttgmLQAQLQETQQELKEAAQQhrddLAAFQKDKLDLQKQVEDLMSQLVAH 845
Cdd:COG4942     24 EAEAELEQLQQEIAELEKELAALKKEEKA----LLKQLAALERRIAALARR----IRALEQELAALEAELAELEKEIAEL 95

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  846 DDSQRLVKEEIEEKVKVAQECSRIQKELEKENASlalSLVEKEKRLLILQEADSVRQQELSSLRQDIQEAQEGQRELGVQ 925
Cdd:COG4942     96 RAELEAQKEELAELLRALYRLGRQPPLALLLSPE---DFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAE 172

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  926 VELLRQEVKEKEadfvareaQLLEELEASRVAEQQLRASLWAQEAKATQLQLQLRSTESQLEALVAEQQPENQAQAQLAS 1005
Cdd:COG4942    173 RAELEALLAELE--------EERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
EnvC super family cl34844
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 53-301 6.58e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG4942:

Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 47.84  E-value: 6.58e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337   53 LLLLVAKTQALEKEAHEKSQELMQLKSHGDLEKAELQDRVTELSALLTQSQKQNE---DYEKMVKALRETMEILETNHAE 129
Cdd:COG4942      8 ALLLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERriaALARRIRALEQELAALEAELAE 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  130 LMEHEASLSRNAQEEKLSLQQVIKAItqalasveeedtvtQSSGHEDSLQSdcnGLSQFDPQDPDRALTLVQSVLTRRQQ 209
Cdd:COG4942     88 LEKEIAELRAELEAQKEELAELLRAL--------------YRLGRQPPLAL---LLSPEDFLDAVRRLQYLKYLAPARRE 150

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  210 AVQDLRQQLSGCQEAMSFLQQQHDQWEEEGRALREKLQKLTGERDALAGQTVGLQGEVDSLTGERDALAGQTVDLQGEVD 289
Cdd:COG4942    151 QAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIA 230

                          250
                   ....*....|..
gi 1720397337  290 SLSRERELLQKA 301
Cdd:COG4942    231 RLEAEAAAAAER 242
 
Name Accession Description Interval E-value
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 284-861 1.70e-23

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 109.26  E-value: 1.70e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  284 LQGEVDSLSRERELLQKARgELQQQLEVLEQEAWRLRRmnmelqlqgDSAQGEKLEQQEELHLAVRERERLQETLVGLEA 363
Cdd:COG1196    198 LERQLEPLERQAEKAERYR-ELKEELKELEAELLLLKL---------RELEAELEELEAELEELEAELEELEAELAELEA 267

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  364 kqseslsELLTLREALESSRLEGELLKQERVEVAAALARAEQSIVELSGSENSLKAEVADLRAAAVKLGALNEALALDKV 443
Cdd:COG1196    268 -------ELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELE 340

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  444 ELNQQLLQLEQENQSLCSRVEAAEQLRSALQVDLAEAERRREALWEKKTQLETQLQKAEEAGAELQAELRGTREEKEELK 523
Cdd:COG1196    341 ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLE 420

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  524 DKLSEAHHQQETATAHLEQLHQDAERQEETLARAVQEKEALVRERAALEVRLQAVERDRQDLTEHVLGLRSAKEQLESNl 603
Cdd:COG1196    421 EELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEA- 499

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  604 fEAQQQNSVIQVTKGQLEVQIQTIIQAKEVIQGEVKCLKLELDAERTRAEQ----EWDAVARQLAQAEQEGQAS------ 673
Cdd:COG1196    500 -EADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQnivvEDDEVAAAAIEYLKAAKAGratflp 578

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  674 LERQKVAHEEEVNRLQEKWEKERSWLQQELDKTLETLERERAELETKLREQQTEMEAIR-----AQREEERSQADSALYQ 748
Cdd:COG1196    579 LDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRravtlAGRLREVTLEGEGGSA 658

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  749 MQLETEKERVSLLETLLRTQKELADASQQLERLRQDMKIQKLKEQETTGMLQAQLQETQQELKEAAQQHRDDLAAfQKDK 828
Cdd:COG1196    659 GGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAE-REEL 737

                          570       580       590
                   ....*....|....*....|....*....|...
gi 1720397337  829 LDLQKQVEDLMSQLVAHDDSQRLVKEEIEEKVK 861
Cdd:COG1196    738 LEELLEEEELLEEEALEELPEPPDLEELERELE 770
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 1609-2126 2.19e-22

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 105.40  E-value: 2.19e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1609 QEAKEQGELREQVLQG-QLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHRE 1687
Cdd:COG1196    216 RELKEELKELEAELLLlKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1688 QVRRLQEELEVEGRQVRALEEVLGDLRAESREHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALR 1767
Cdd:COG1196    296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1768 AENQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLEEALRiREGEI 1847
Cdd:COG1196    376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE-EEAEL 454

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1848 QAQALQHHEVTQHLQQELCQKKEELRQLLEKAGARRSQENGIQEKQSLEQERQEETRRLLESLKELQLTVAqreeeilmL 1927
Cdd:COG1196    455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGA--------V 526

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1928 REASSPRHRALPAEKPALQPLPAQQELERLQTALRQTEAREIEWREKAQDLALSLAQSKASISSLQEITMFLQASVLERE 2007
Cdd:COG1196    527 AVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVAS 606

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 2008 SEQQRLQEELVLSRQALEEQQ-SGGPHSTSRADQGPKVGQGSQSGEVETEPSPGVEEKERLTQRLERLQQAVAELEVDRS 2086
Cdd:COG1196    607 DLREADARYYVLGDTLLGRTLvAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAE 686

                          490       500       510       520
                   ....*....|....*....|....*....|....*....|
gi 1720397337 2087 KLQCHNAQLRTALEQVERERRKLKRDSVRASRAGSLEARE 2126
Cdd:COG1196    687 RLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEAL 726
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 1076-1878 2.58e-19

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 95.51  E-value: 2.58e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1076 ARQARDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDLHETAASLQSRLRQAEL 1155
Cdd:TIGR02168  237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLER 316

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1156 QKMEAQNDRELLQASKEKLSAQVEHLQAcvaeaqaqadAAAVLEEDLRTARSALKLKNEELESERERAQALQEQGELKVA 1235
Cdd:TIGR02168  317 QLEELEAQLEELESKLDELAEELAELEE----------KLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS 386

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1236 QGKALQENLALLAQTLSNREREVETLQAEVQELekQREMQKAALELLSLDLKKRSREVDLQQEQIQELEQCRSVLEHLPM 1315
Cdd:TIGR02168  387 KVAQLELQIASLNNEIERLEARLERLEDRRERL--QQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALE 464

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1316 AVQEREQKLSVQRDQIRELENDREAQRSVLEHQLLDLE----------QKAQVIESQRGQIQDL---KKQLGTLECLALE 1382
Cdd:TIGR02168  465 ELREELEEAEQALDAAERELAQLQARLDSLERLQENLEgfsegvkallKNQSGLSGILGVLSELisvDEGYEAAIEAALG 544

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1383 LEESHHKVESQQKMITELEGQREMQRVALTHLTLDLEeRSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDE 1462
Cdd:TIGR02168  545 GRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSI-KGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLG 623

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1463 LQKQQEQLAQALERKGQELvlQKERIQVLEDQRTLQTKILEEDLEQIKHSLRERSQELASQWQLVHERADDgkspskgqr 1542
Cdd:TIGR02168  624 GVLVVDDLDNALELAKKLR--PGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEK--------- 692

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1543 gslehlkliLRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHL-QEAKEQGELREQ- 1620
Cdd:TIGR02168  693 ---------IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIaQLSKELTELEAEi 763

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1621 -VLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELEVE 1699
Cdd:TIGR02168  764 eELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDL 843

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1700 GRQVRALEEVLGDLRAESREHEKAVLALQqrcaEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQYSRRQEEA 1779
Cdd:TIGR02168  844 EEQIEELSEDIESLAAEIEELEELIEELE----SELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEE 919

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1780 AVSQAEALQEALSKAQAALQEKEQSLLEQAELS-HTLEASTAALQATLDTCQASARQLEEALrIREGEIQAQALQHHEVT 1858
Cdd:TIGR02168  920 LREKLAQLELRLEGLEVRIDNLQERLSEEYSLTlEEAEALENKIEDDEEEARRRLKRLENKI-KELGPVNLAAIEEYEEL 998

                          810       820
                   ....*....|....*....|
gi 1720397337 1859 QHLQQELCQKKEELRQLLEK 1878
Cdd:TIGR02168  999 KERYDFLTAQKEDLTEAKET 1018
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 673-1355 4.82e-19

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 94.74  E-value: 4.82e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  673 SLERQKVAHEEEVNRLQEKWEKERSwLQQELDKTLETLERERAELETKLREQQTEMEAIRA------QREEERSQADSAL 746
Cdd:TIGR02168  236 ELREELEELQEELKEAEEELEELTA-ELQELEEKLEELRLEVSELEEEIEELQKELYALANeisrleQQKQILRERLANL 314

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  747 YQMQLETEKERVSLLETLLRTQKELADASQQLERLRQDMKIQKlKEQETTGMLQAQLQETQQELKEAAQQHRDDLAAFQK 826
Cdd:TIGR02168  315 ERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLE-AELEELEAELEELESRLEELEEQLETLRSKVAQLEL 393

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  827 DKLDLQKQVEDLMSQLVAHDDSQRLVKEEIEEKVKVAQ-----ECSRIQKELEKENASLALSLVEKEKRLLILQEADSVR 901
Cdd:TIGR02168  394 QIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEeaelkELQAELEELEEELEELQEELERLEEALEELREELEEA 473

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  902 QQELSSLRQDIQEAQEGQRELGVQVELLRQE---------VKEKEADFVAREAQLLE-ELEASRVAEQQLRASL------ 965
Cdd:TIGR02168  474 EQALDAAERELAQLQARLDSLERLQENLEGFsegvkallkNQSGLSGILGVLSELISvDEGYEAAIEAALGGRLqavvve 553

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  966 -------------WAQEAKATQLQL--------------QLRSTESQLEALVAEQQPENQAQAQLASLCS--VLQQALGS 1016
Cdd:TIGR02168  554 nlnaakkaiaflkQNELGRVTFLPLdsikgteiqgndreILKNIEGFLGVAKDLVKFDPKLRKALSYLLGgvLVVDDLDN 633

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1017 ACESRPELRGGGdsapTLWGPDPDQNGASRLFKRWSLPTALSPEAVALALQKLHQDVWKARQARDDLRDQVQKLVQRLTD 1096
Cdd:TIGR02168  634 ALELAKKLRPGY----RIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEE 709

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1097 TEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDLHETAASLQSRLRQAELQKMEAQNDRELLQASKEKLSA 1176
Cdd:TIGR02168  710 LEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA 789

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1177 QVEHLQACVAEAQAQADAaavLEEDLRTARSALKLKNEELESERERAQALQEQGELKVAQGKALQENLALLAQTLSNRER 1256
Cdd:TIGR02168  790 QIEQLKEELKALREALDE---LRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEE 866

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1257 EVETLQAEVQELEKQREMQKAALELLSLDLKKRSREVDLQQEQIQELEQCRSVLEHLPMAVQEREQKLSVQRDQIRE--- 1333
Cdd:TIGR02168  867 LIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQErls 946

                          730       740       750
                   ....*....|....*....|....*....|....
gi 1720397337 1334 ------------LENDREAQRSVLEHQLLDLEQK 1355
Cdd:TIGR02168  947 eeysltleeaeaLENKIEDDEEEARRRLKRLENK 980
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 1060-1703 1.36e-16

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 86.53  E-value: 1.36e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1060 EAVALALQKLHQDVWKARQARDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDL 1139
Cdd:COG1196    228 ELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARL 307

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1140 HETAASLQSRLRQAELQKMEAQNDRELLQASKEKLSAQVEHLQAcvaEAQAQADAAAVLEEDLRTARSALKLKNEELESE 1219
Cdd:COG1196    308 EERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEE---ELEEAEAELAEAEEALLEAEAELAEAEEELEEL 384

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1220 RERAQALQEQGELKVAQGKALQENLALLAQTLSNREREVETLQAEVQELEKQREMQKAALEllsldlkkrsrevdlqqeq 1299
Cdd:COG1196    385 AEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE------------------- 445

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1300 iqeleqcrsvlehlpmAVQEREQKLSVQRDQIRELENDREAQRSVLEHQLLDLEQKAQVIESQRGQIQDLKKQLGTLECL 1379
Cdd:COG1196    446 ----------------EAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG 509

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1380 ALELEESHHKVESQQKMITELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHElenhstHLAKELQERDQEVtsQRQQ 1459
Cdd:COG1196    510 VKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIE------YLKAAKAGRATFL--PLDK 581

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1460 IDELQKQQEQLAQALERKGQELVLQKERIQVLEDQRTLQTKILEEDLEQIKHSLRERSQELASQWQLVHERADDGKSPSK 1539
Cdd:COG1196    582 IRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGS 661

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1540 GQRGSLEHLKLILRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQGELRE 1619
Cdd:COG1196    662 LTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEEL 741

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1620 QVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESM-KLKTSALQ--AALEQAHATLKERQGELEEHREQVRRLQEEL 1696
Cdd:COG1196    742 LEEEELLEEEALEELPEPPDLEELERELERLEREIEALgPVNLLAIEeyEELEERYDFLSEQREDLEEARETLEEAIEEI 821


                   ....*..
gi 1720397337 1697 EVEGRQV 1703
Cdd:COG1196    822 DRETRER 828
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 1241-2081 6.71e-14

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 77.79  E-value: 6.71e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1241 QENLALLAQTLSNREREVETLQAEVQELEKQREMQK----AALELLSLDLKKRSREVDLQQEQIQELeqcRSVLEHLPMA 1316
Cdd:TIGR02168  185 RENLDRLEDILNELERQLKSLERQAEKAERYKELKAelreLELALLVLRLEELREELEELQEELKEA---EEELEELTAE 261

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1317 VQEREQKLSVQRDQIRELEND-REAQRSVLEHQLL--DLEQKAQVIESQRGQIQDLKKQLGTLECLALEleeshhKVESQ 1393
Cdd:TIGR02168  262 LQELEEKLEELRLEVSELEEEiEELQKELYALANEisRLEQQKQILRERLANLERQLEELEAQLEELES------KLDEL 335

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1394 QKMITELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQA 1473
Cdd:TIGR02168  336 AEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDR 415

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1474 LERKGQELVLQKERIQVLE----DQRTLQTKILEEDLEQIKHSLRERSQELASQWQLVHERADDGKSPSKGQRGSLEHLK 1549
Cdd:TIGR02168  416 RERLQQEIEELLKKLEEAElkelQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLE 495

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1550 LILRDKEKEVECQQERIQE---LQGHMGQLEQQL-------QGLHRKVGETSLLLTHREQETATLQQHLQEAKEQGelRE 1619
Cdd:TIGR02168  496 RLQENLEGFSEGVKALLKNqsgLSGILGVLSELIsvdegyeAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELG--RV 573

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1620 QVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAH-----ATLKERQGELEEHREQVRRLQE 1694
Cdd:TIGR02168  574 TFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLvvddlDNALELAKKLRPGYRIVTLDGD 653

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1695 ELEVEGRQVRALEE---VLGDLRAESREHEKAVLALQQRCAE---QAQEHEAEARTLQDSWLQAQATLTEQEQELAALRA 1768
Cdd:TIGR02168  654 LVRPGGVITGGSAKtnsSILERRREIEELEEKIEELEEKIAElekALAELRKELEELEEELEQLRKELEELSRQISALRK 733

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1769 ENQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLEEALRIREGEIQ 1848
Cdd:TIGR02168  734 DLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT 813

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1849 AQALQHHEVTQHLQQELcQKKEELRQLLEKAGARRSQENGIQEKQSLEQERQEETRRLLES-LKELQLTVAQREEEILML 1927
Cdd:TIGR02168  814 LLNEEAANLRERLESLE-RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESeLEALLNERASLEEALALL 892

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1928 REassprhralpaekpalqplpaqqELERLQTALRQTEAREIEWREKAQDLALSLAQSKASISSLQeitmflqasvLERE 2007
Cdd:TIGR02168  893 RS-----------------------ELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLE----------VRID 939

                          810       820       830       840       850       860       870
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720397337 2008 SEQQRLQEELVLSRQaleeqqsggphstsradqgpkvgqgsqsgEVETEPSPGVEEKERLTQRLERLQQAVAEL 2081
Cdd:TIGR02168  940 NLQERLSEEYSLTLE-----------------------------EAEALENKIEDDEEEARRRLKRLENKIKEL 984
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 1311-2110 1.40e-12

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 73.61  E-value: 1.40e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1311 EHLPMAVQEREQKLSVQRDQIRELENDREAQRSVLEHQLLDLEQKAQVIESQRGQIQDLKKQLG-TLECLALELEESHHK 1389
Cdd:pfam15921   74 EHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESqSQEDLRNQLQNTVHE 153

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1390 VESQQKMITELEGQREMQRVALTHLTLDLEERSQEL--------QAQSSQLHELENHST--------HLAKELQERDQEV 1453
Cdd:pfam15921  154 LEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIrsilvdfeEASGKKIYEHDSMSTmhfrslgsAISKILRELDTEI 233

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1454 TSQRQQIDELQKQQEQLAQALERKGQELVLQ-KERIQVLEDQRTLQTKILEEDLEqikhSLRERSQELASQWQLVHERAD 1532
Cdd:pfam15921  234 SYLKGRIFPVEDQLEALKSESQNKIELLLQQhQDRIEQLISEHEVEITGLTEKAS----SARSQANSIQSQLEIIQEQAR 309

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1533 DGKSPSKGQRGSLEHLKLILRDKEKEVECQQERIQElqghmgQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAK 1612
Cdd:pfam15921  310 NQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIE------ELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLL 383

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1613 EQGELREQVLQGQLEEAQR-------DLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQ------ 1679
Cdd:pfam15921  384 ADLHKREKELSLEKEQNKRlwdrdtgNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNeslekv 463

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1680 ----GELEEHREQVRRLQEELEVEGRQVRALEEVLGDLRAESREHEKAVlalqqrcaeqaqeheaEARTLQDSWLQAQAT 1755
Cdd:pfam15921  464 ssltAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAI----------------EATNAEITKLRSRVD 527

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1756 LteQEQELAALRAENQYSRRQEeaavSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALqatldtcQASARQ 1835
Cdd:pfam15921  528 L--KLQELQHLKNEGDHLRNVQ----TECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAM-------QVEKAQ 594

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1836 LEEALRIREGEIQAQALQHHEVTQHLqQELCQKKEELRqlLEKAGARRSQENGIQEKQSLEQERQEETRRLLESLKELQl 1915
Cdd:pfam15921  595 LEKEINDRRLELQEFKILKDKKDAKI-RELEARVSDLE--LEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELN- 670

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1916 tVAQREEEILMLREASSPRHRALPAEKPALQPLPAQQELERLQTALRQTEAREIEWREKAQDLALSLAQSKASISSLQEI 1995
Cdd:pfam15921  671 -SLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSK 749

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1996 TMFLQASVLERESEQQRLQEElvlsRQALEEQQSggphstsradqgpkvgqgsqsgEVETEPSPGVEEKERLTQRLERLQ 2075
Cdd:pfam15921  750 IQFLEEAMTNANKEKHFLKEE----KNKLSQELS----------------------TVATEKNKMAGELEVLRSQERRLK 803

                          810       820       830
                   ....*....|....*....|....*....|....*
gi 1720397337 2076 QAVAELEVDRSKLQCHNAQLRTALEQVERERRKLK 2110
Cdd:pfam15921  804 EKVANMEVALDKASLQFAECQDIIQRQEQESVRLK 838
PTZ00121 PTZ00121
MAEBL; Provisional
 287-1000 1.59e-12

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 73.64  E-value: 1.59e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  287 EVDSLSRERELLQKARGELQQQLEVLEQEAWRLRRMNmELQLQGDSAQGEKLEQQEELHLAVREReRLQETLVGLEAKQS 366
Cdd:PTZ00121  1095 EAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAE-EARKAEDARKAEEARKAEDAKRVEIAR-KAEDARKAEEARKA 1172

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  367 ESLSELLTLREALESSRLEgELLKQERVEVAAALARAEQ--SIVELSGSENSLKAEvADLRAAAVKLGAlNEALALDKVE 444
Cdd:PTZ00121  1173 EDAKKAEAARKAEEVRKAE-ELRKAEDARKAEAARKAEEerKAEEARKAEDAKKAE-AVKKAEEAKKDA-EEAKKAEEER 1249

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  445 LNQQLLQLEQENQSLCSRVEA---AEQLRSALQVDLAEAERRREAL--WEKKTQLETQLQKAEEA--GAELQAELRGTRE 517
Cdd:PTZ00121  1250 NNEEIRKFEEARMAHFARRQAaikAEEARKADELKKAEEKKKADEAkkAEEKKKADEAKKKAEEAkkADEAKKKAEEAKK 1329

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  518 EKEELKDKLSEAHHQQETATAHLEQLHQDAERQEETLARAVQEKEAlvRERAALEVRLQAVERDRQDltehvlglrSAKE 597
Cdd:PTZ00121  1330 KADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEE--AKKKADAAKKKAEEKKKAD---------EAKK 1398

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  598 QLESNLFEAQQQNSVIQVTKGQLEVQIQtiiqAKEVIQGEvkclKLELDAERTRAEQEWDAVARQLAQAEQEGQASLERQ 677
Cdd:PTZ00121  1399 KAEEDKKKADELKKAAAAKKKADEAKKK----AEEKKKAD----EAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK 1470

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  678 KVaheeevNRLQEKWEKERSwlQQELDKTLETLERERAELETKLREQQTEMEAIRAqreEERSQADsalyqmQLETEKER 757
Cdd:PTZ00121  1471 KA------DEAKKKAEEAKK--ADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKA---EEAKKAD------EAKKAEEA 1533

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  758 VSLLETLLRTQKELADASQQLERLRQDMKIQKLKEQETTGMLQAQLQETQQELKEAAQQHRDDLAAFQKDKLDLQkqVED 837
Cdd:PTZ00121  1534 KKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMK--AEE 1611

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  838 LMSQLVAHDDSQRLVKEEiEEKVKVAQECSRIQKELEKenaslALSLVEKEKRLLILQEADSVRQQELSSLRQDIQEAQE 917
Cdd:PTZ00121  1612 AKKAEEAKIKAEELKKAE-EEKKKVEQLKKKEAEEKKK-----AEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEE 1685

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  918 GQRElgvqvellRQEVKEKEADFVAREAQLLEELEASRVAEQQLRASLWAQEAKATQLQLQLRSTESQLEALVAEQQPEN 997
Cdd:PTZ00121  1686 DEKK--------AAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKK 1757


                   ...
gi 1720397337  998 QAQ 1000
Cdd:PTZ00121  1758 KIA 1760
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
1201-1719 1.61e-11

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 70.07  E-value: 1.61e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1201 DLRTARSALKLKNEELESERERAQALQEQGELKVAQGKALQENLALLAQ-------TLSNREREVETLQAEVQELEKQRE 1273
Cdd:PRK02224   210 GLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAeiedlreTIAETEREREELAEEVRDLRERLE 289

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1274 M----QKAALELLSLDLKKRSREVDLQQEQIQELEQCRSVLEHLPMAVQEREQKLSVQRDQIRELENDREAQRSVLEHQL 1349
Cdd:PRK02224   290 EleeeRDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELE 369

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1350 LDLEQKAQVIESQRGQIQDLKKQLGTLECLALELEESHHKVESQQKMITE----LEGQREMQRVALTHLTLDLEERSQEL 1425
Cdd:PRK02224   370 SELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREerdeLREREAELEATLRTARERVEEAEALL 449

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1426 QAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERkGQELVLQKERIQVLEDQRTLQTKILEED 1505
Cdd:PRK02224   450 EAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLER-AEDLVEAEDRIERLEERREDLEELIAER 528

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1506 LEQIKH------SLRERSQELASQWQLVHERADDGKSPSKGQRGSLEHLKLILRDKEKEVEcQQERIQELQGHMGQLEQQ 1579
Cdd:PRK02224   529 RETIEEkreraeELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIE-SLERIRTLLAAIADAEDE 607

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1580 LQGLHRKVGETSLLLTHReqetatlQQHLQEAKEQ-GELREQVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMK 1658
Cdd:PRK02224   608 IERLREKREALAELNDER-------RERLAEKRERkRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQ 680

                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720397337 1659 LKTSALQAALEQAhATLKERQGELEEHREQVRRLQEElevegrqVRALEEVLGDLRAESRE 1719
Cdd:PRK02224   681 AEIGAVENELEEL-EELRERREALENRVEALEALYDE-------AEELESMYGDLRAELRQ 733
PTZ00121 PTZ00121
MAEBL; Provisional
 1458-2069 8.00e-08

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 58.23  E-value: 8.00e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1458 QQIDELQKQQEQLAQALERKGQELVLQKERIQVLEDQRTLQTKILEEDLEQIKHSLRERSQELASQWQLVHERADDGKSP 1537
Cdd:PTZ00121  1212 RKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKK 1291

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1538 SKGQRGSLEHLKLilrDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQGEL 1617
Cdd:PTZ00121  1292 ADEAKKAEEKKKA---DEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEA 1368

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1618 REQvlqgQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEqahatlKERQGELEEHREQVRRlQEELE 1697
Cdd:PTZ00121  1369 AEK----KKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAA------KKKADEAKKKAEEKKK-ADEAK 1437

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1698 VEGRQVRALEEVLGDLRAESREHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAQatltEQEQELAALRAENQYSRRQE 1777
Cdd:PTZ00121  1438 KKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAE----EAKKKADEAKKAAEAKKKAD 1513

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1778 EAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLEE----ALRIREGEIQAQALQ 1853
Cdd:PTZ00121  1514 EAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEdknmALRKAEEAKKAEEAR 1593

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1854 HHEVTQHLQQELCQKKEELRQLLE---KAGARRSQENGIQEKQSLEQERQEETRRLLESLKELQLTVAQREEEilmLREA 1930
Cdd:PTZ00121  1594 IEEVMKLYEEEKKMKAEEAKKAEEakiKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEE---AKKA 1670

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1931 SSPRHRALPAEKPALQPLPAQQELERLQTALRQTE---AREIEWREKAQDLALSLAQSKASISSLQeitmflqasvlERE 2007
Cdd:PTZ00121  1671 EEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEelkKKEAEEKKKAEELKKAEEENKIKAEEAK-----------KEA 1739

                          570       580       590       600       610       620
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720397337 2008 SEQQRLQEELVLSRQALEEQQSGGPHSTSRADQGPKVGQGSQSGEVETEPSPGVEEKERLTQ 2069
Cdd:PTZ00121  1740 EEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIK 1801
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 481-1162 3.97e-07

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 55.51  E-value: 3.97e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  481 ERRREALWEKKTQLETQLQKAEEAGAELQAELRGTREEKEELKDKLSEAHHQQETATAHLEQLHQDAERQEETLARAVQE 560
Cdd:pfam15921  102 EKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLS 181

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  561 KEALVRERAALEVRLQavERDRQDLTEH----VLGLRSAKEQLESNLFEAQQQNSVIQVTKGQLEVQIQTIiqaKEVIQG 636
Cdd:pfam15921  182 HEGVLQEIRSILVDFE--EASGKKIYEHdsmsTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEAL---KSESQN 256

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  637 EVKCLkleLDAERTRAEQ-------------EWDAVARQLAQAEQEGQASLERQKVAHEEEVNRLQEKWEKERSWLQQEL 703
Cdd:pfam15921  257 KIELL---LQQHQDRIEQliseheveitgltEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSEL 333

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  704 DKTLETLERERAELETKLREQQTEMEAIRAQREEERSQADSALYQMQletekervSLLETLLRTQKELADASQQLERL-- 781
Cdd:pfam15921  334 REAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQ--------KLLADLHKREKELSLEKEQNKRLwd 405

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  782 ------------RQDMKIQKLKEQETTGMLQAQLQETQQELKEaaqqhrdDLAAFQKDKLDLQKqVEDLMSQLVAHDDSQ 849
Cdd:pfam15921  406 rdtgnsitidhlRRELDDRNMEVQRLEALLKAMKSECQGQMER-------QMAAIQGKNESLEK-VSSLTAQLESTKEML 477

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  850 RLVKEEIEEKVKVAQECSRIQKELEKENASLALSLVEKEKRLLILQEADSVRQQELSSLRQDIQEAQEGQRE---LGVQ- 925
Cdd:pfam15921  478 RKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTEceaLKLQm 557

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  926 ------VELLRQEVK----------EKEADFVAREAQLLEELEASRVAEQQLRASLWAQEAKATQLQLQLRSTESQLEAL 989
Cdd:pfam15921  558 aekdkvIEILRQQIEnmtqlvgqhgRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKL 637

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  990 VAEQQPE-------NQAQAQLASLCSVLQQALGSACES----RPELRGGGDSAPTLWGPDPDQNGASRLFKRWSLPTALS 1058
Cdd:pfam15921  638 VNAGSERlravkdiKQERDQLLNEVKTSRNELNSLSEDyevlKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKS 717

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1059 PEA-------VALALQKlhqDVWKARQARDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNS 1131
Cdd:pfam15921  718 MEGsdghamkVAMGMQK---QITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEV 794

                          730       740       750
                   ....*....|....*....|....*....|.
gi 1720397337 1132 LESELRDLHETAASLQSRLRQAELQKMEAQN 1162
Cdd:pfam15921  795 LRSQERRLKEKVANMEVALDKASLQFAECQD 825
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
 684-1532 2.55e-06

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 53.05  E-value: 2.55e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  684 EVNRLQEKWEKERSWLQQELDKTLETlERERAELETKLREQQTEMEAIRAQREEERSQADSALyqMQLETEKERVSLLET 763
Cdd:pfam02463  143 KIEIIAMMKPERRLEIEEEAAGSRLK-RKKKEALKKLIEETENLAELIIDLEELKLQELKLKE--QAKKALEYYQLKEKL 219

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  764 LLRTQKELADASQQLERLRQDMKIQKLKEQETTGMLQAQLQETQQELKEAAQQHRDDLAAFQKDKLDLQKQVEDLMSQLV 843
Cdd:pfam02463  220 ELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELK 299

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  844 AHDDSQRLVKEEIEEKVKVAQ-ECSRIQKELEKE-----NASLALSLVEKEKRLLILQEADSVRQQELSSLRQD------ 911
Cdd:pfam02463  300 SELLKLERRKVDDEEKLKESEkEKKKAEKELKKEkeeieELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEellakk 379

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  912 -IQEAQEGQRELGVQVELLRQEVKEKEADFVAREAQLLEEL-------EASRVAEQQLRASLWAQEAKATQLQLQLRSTE 983
Cdd:pfam02463  380 kLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLlkeekkeELEILEEEEESIELKQGKLTEEKEELEKQELK 459

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  984 SQLEALVAEQQPENQAQAQLASLCSVLQQALGSACESRPELRGGGDSAPTLWGPDPDQNGASRLFKRWSLPTALSPEAVA 1063
Cdd:pfam02463  460 LLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVE 539

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1064 LALQKLHQDVWKARQARDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLesELRDLHETA 1143
Cdd:pfam02463  540 NYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQL--DKATLEADE 617

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1144 ASLQSRLRQAELQKMEAQNDRELLQASKEKLSAQVEHLQACVAEAQAQADAAAVLEEDLRTARSALKLKNEELESERERA 1223
Cdd:pfam02463  618 DDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRR 697

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1224 QALQEQGELKVAQgkALQENLALLAQTLSNREREVETLQAEVQELEKQREMQKAALELLSLDLKKRSREVDLQQEQIQEL 1303
Cdd:pfam02463  698 QLEIKKKEQREKE--ELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKE 775

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1304 EQCRSVLEHLPMAVQEREQKLSVQRDQIRELENDREAQRSVLEHQLLDLEQKAQVIESQRGQIQDLKKQLGTLECLALEL 1383
Cdd:pfam02463  776 LAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEE 855

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1384 EESHHKVESQQKMI-TELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDE 1462
Cdd:pfam02463  856 LERLEEEITKEELLqELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEE 935

                          810       820       830       840       850       860       870
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720397337 1463 LQKQQEQLAQALERKGQE-LVLQKERIQVLEDQRTLQTKILEEDLEQIKHSLRERSQELASQWQLVHERAD 1532
Cdd:pfam02463  936 EPEELLLEEADEKEKEENnKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKK 1006
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 766-1005 2.62e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 48.99  E-value: 2.62e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  766 RTQKELADASQQLERLRQDMKIQKLKEQEttgmLQAQLQETQQELKEAAQQhrddLAAFQKDKLDLQKQVEDLMSQLVAH 845
Cdd:COG4942     24 EAEAELEQLQQEIAELEKELAALKKEEKA----LLKQLAALERRIAALARR----IRALEQELAALEAELAELEKEIAEL 95

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  846 DDSQRLVKEEIEEKVKVAQECSRIQKELEKENASlalSLVEKEKRLLILQEADSVRQQELSSLRQDIQEAQEGQRELGVQ 925
Cdd:COG4942     96 RAELEAQKEELAELLRALYRLGRQPPLALLLSPE---DFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAE 172

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  926 VELLRQEVKEKEadfvareaQLLEELEASRVAEQQLRASLWAQEAKATQLQLQLRSTESQLEALVAEQQPENQAQAQLAS 1005
Cdd:COG4942    173 RAELEALLAELE--------EERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 53-301 6.58e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 47.84  E-value: 6.58e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337   53 LLLLVAKTQALEKEAHEKSQELMQLKSHGDLEKAELQDRVTELSALLTQSQKQNE---DYEKMVKALRETMEILETNHAE 129
Cdd:COG4942      8 ALLLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERriaALARRIRALEQELAALEAELAE 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  130 LMEHEASLSRNAQEEKLSLQQVIKAItqalasveeedtvtQSSGHEDSLQSdcnGLSQFDPQDPDRALTLVQSVLTRRQQ 209
Cdd:COG4942     88 LEKEIAELRAELEAQKEELAELLRAL--------------YRLGRQPPLAL---LLSPEDFLDAVRRLQYLKYLAPARRE 150

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  210 AVQDLRQQLSGCQEAMSFLQQQHDQWEEEGRALREKLQKLTGERDALAGQTVGLQGEVDSLTGERDALAGQTVDLQGEVD 289
Cdd:COG4942    151 QAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIA 230

                          250
                   ....*....|..
gi 1720397337  290 SLSRERELLQKA 301
Cdd:COG4942    231 RLEAEAAAAAER 242
PRK09039 PRK09039
peptidoglycan -binding protein;
199-344 6.66e-03

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 41.10  E-value: 6.66e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  199 LVQSVL----TRRQQAVQDLRQQLSGCQEAMSFLQQQHDQWEEEGRALREKLQKLTGERDALAGQTVGLQGEVDSLTGER 274
Cdd:PRK09039    39 VAQFFLsreiSGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRA 118

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  275 DALAGQtvdlqgevdsLSRERELLQKARgelqQQLEVLEQEAWRLRRMNMELQLQGDSAQGEKLEQQEEL 344
Cdd:PRK09039   119 GELAQE----------LDSEKQVSARAL----AQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKI 174
 
Name Accession Description Interval E-value
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 284-861 1.70e-23

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 109.26  E-value: 1.70e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  284 LQGEVDSLSRERELLQKARgELQQQLEVLEQEAWRLRRmnmelqlqgDSAQGEKLEQQEELHLAVRERERLQETLVGLEA 363
Cdd:COG1196    198 LERQLEPLERQAEKAERYR-ELKEELKELEAELLLLKL---------RELEAELEELEAELEELEAELEELEAELAELEA 267

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  364 kqseslsELLTLREALESSRLEGELLKQERVEVAAALARAEQSIVELSGSENSLKAEVADLRAAAVKLGALNEALALDKV 443
Cdd:COG1196    268 -------ELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELE 340

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  444 ELNQQLLQLEQENQSLCSRVEAAEQLRSALQVDLAEAERRREALWEKKTQLETQLQKAEEAGAELQAELRGTREEKEELK 523
Cdd:COG1196    341 ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLE 420

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  524 DKLSEAHHQQETATAHLEQLHQDAERQEETLARAVQEKEALVRERAALEVRLQAVERDRQDLTEHVLGLRSAKEQLESNl 603
Cdd:COG1196    421 EELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEA- 499

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  604 fEAQQQNSVIQVTKGQLEVQIQTIIQAKEVIQGEVKCLKLELDAERTRAEQ----EWDAVARQLAQAEQEGQAS------ 673
Cdd:COG1196    500 -EADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQnivvEDDEVAAAAIEYLKAAKAGratflp 578

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  674 LERQKVAHEEEVNRLQEKWEKERSWLQQELDKTLETLERERAELETKLREQQTEMEAIR-----AQREEERSQADSALYQ 748
Cdd:COG1196    579 LDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRravtlAGRLREVTLEGEGGSA 658

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  749 MQLETEKERVSLLETLLRTQKELADASQQLERLRQDMKIQKLKEQETTGMLQAQLQETQQELKEAAQQHRDDLAAfQKDK 828
Cdd:COG1196    659 GGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAE-REEL 737

                          570       580       590
                   ....*....|....*....|....*....|...
gi 1720397337  829 LDLQKQVEDLMSQLVAHDDSQRLVKEEIEEKVK 861
Cdd:COG1196    738 LEELLEEEELLEEEALEELPEPPDLEELERELE 770
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 1609-2126 2.19e-22

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 105.40  E-value: 2.19e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1609 QEAKEQGELREQVLQG-QLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHRE 1687
Cdd:COG1196    216 RELKEELKELEAELLLlKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1688 QVRRLQEELEVEGRQVRALEEVLGDLRAESREHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALR 1767
Cdd:COG1196    296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1768 AENQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLEEALRiREGEI 1847
Cdd:COG1196    376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE-EEAEL 454

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1848 QAQALQHHEVTQHLQQELCQKKEELRQLLEKAGARRSQENGIQEKQSLEQERQEETRRLLESLKELQLTVAqreeeilmL 1927
Cdd:COG1196    455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGA--------V 526

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1928 REASSPRHRALPAEKPALQPLPAQQELERLQTALRQTEAREIEWREKAQDLALSLAQSKASISSLQEITMFLQASVLERE 2007
Cdd:COG1196    527 AVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVAS 606

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 2008 SEQQRLQEELVLSRQALEEQQ-SGGPHSTSRADQGPKVGQGSQSGEVETEPSPGVEEKERLTQRLERLQQAVAELEVDRS 2086
Cdd:COG1196    607 DLREADARYYVLGDTLLGRTLvAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAE 686

                          490       500       510       520
                   ....*....|....*....|....*....|....*....|
gi 1720397337 2087 KLQCHNAQLRTALEQVERERRKLKRDSVRASRAGSLEARE 2126
Cdd:COG1196    687 RLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEAL 726
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 1399-1930 2.05e-21

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 102.32  E-value: 2.05e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1399 ELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERKG 1478
Cdd:COG1196    236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELE 315

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1479 QELVLQKERIQVLEDQRTLQTKILEEDLEQIKHSLRERSQELASQWQLVHERADDGKSPSKGQRGSLEHLKLILRDKEKE 1558
Cdd:COG1196    316 ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA 395

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1559 VEcQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQgELREQVLQGQLEEAQRDLAQRDH 1638
Cdd:COG1196    396 AE-LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE-EAELEEEEEALLELLAELLEEAA 473

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1639 ELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGeLEEHREQVRRLQEELEVEGRQVRALEEVLGDLRAESR 1718
Cdd:COG1196    474 LLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL-LAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIV 552

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1719 EHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQYSRRQEEAAVSQAEALQEALSKAQAAL 1798
Cdd:COG1196    553 VEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARL 632

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1799 QEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLEEALRIREGEIQAQALQHHEVTQHLQQELCQKKEELRQLLEK 1878
Cdd:COG1196    633 EAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEA 712

                          490       500       510       520       530
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1720397337 1879 AGARRSQENGIQEKQSLEQERQEETRRLLESLKELQLTVAQREEEILMLREA 1930
Cdd:COG1196    713 EEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEE 764
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 1555-2112 2.82e-21

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 101.94  E-value: 2.82e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1555 KEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQGELREQVLQGQLEEAQRDLA 1634
Cdd:COG1196    223 KELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQ 302

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1635 QRDHELETLRQEKQQTQDQEESMKlktsALQAALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLGDLR 1714
Cdd:COG1196    303 DIARLEERRRELEERLEELEEELA----ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1715 AESREHEKAVLALQQRCAEQAQEHEAEARTLQDswlqAQATLTEQEQELAALRAENQYSRRQEEAAVSQAEALQEALSKA 1794
Cdd:COG1196    379 EELEELAEELLEALRAAAELAAQLEELEEAEEA----LLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1795 QAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLEEALRIREGEIQAQALQHHEVTQHLQ----QELCQKKE 1870
Cdd:COG1196    455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLagavAVLIGVEA 534

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1871 ELRQLLEKAGARRSQENGIQEKQSLEQERQEETRRLLESLKELQLT-VAQREEEILMLREASSPRHRALPAEKPALQPLP 1949
Cdd:COG1196    535 AYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDkIRARAALAAALARGAIGAAVDLVASDLREADAR 614

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1950 AQQELERLQTALRQTEAREIEWREKAQDLALSLAQSKASISSLQEITMFLQASVLERESEQQRLQEELVLSRQALEEQQS 2029
Cdd:COG1196    615 YYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELE 694

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 2030 GGPHSTSRADQGPKVGQGSQSGEVETEPSpgVEEKERLTQRLERLQQAVAELEVDRSKLQCHNAQLRTALEQVERERRKL 2109
Cdd:COG1196    695 LEEALLAEEEEERELAEAEEERLEEELEE--EALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERL 772


                   ...
gi 1720397337 2110 KRD 2112
Cdd:COG1196    773 ERE 775
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 240-781 2.09e-20

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 99.24  E-value: 2.09e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  240 RALREKLQKLTGERDALAGQTVGLQGEVDSLTGERDALAGQTVDLQGEVDSLSRERELLQKARGELQQQLEVLEQEAWRL 319
Cdd:COG1196    235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  320 RRMNMELQLQGDSAQGEKLEQQEELHLAVRERERLQETLVGLEAKQSESLSELLTLREALESSRLEGELLKQERVEVAAA 399
Cdd:COG1196    315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA 394

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  400 LARAEQSIVELSGSENSLKAEVADLRAAAVKLGALNEALALDKVELNQQLLQLEQENQSLCSRVEAAEQLRSALQVDLAE 479
Cdd:COG1196    395 AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL 474

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  480 AERRREALWEKKTQLETQLQKAEEAGAELQAELRGTREEKEELKDKLSEAHHQQETATAHLEQLHQDAERQEETLARAVQ 559
Cdd:COG1196    475 LEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVE 554

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  560 EKEALVRERAALEVRLQAVERDRQDLTEHVLGLRSAKEQLESNLFEAQQQNSVIQVTKGQLEVQIQTIIQAKEVIQGEVK 639
Cdd:COG1196    555 DDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEA 634

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  640 CLKLELDAERTRAEQEWDAVARQLAQAEQEGQASLERQKVAHEEEVNRLQEKWEKERSWLQQELDKTLETLERERAELET 719
Cdd:COG1196    635 ALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEE 714

                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720397337  720 KLREQQTEMEAIRAQREEERSQADSALYQMQLETEKERVSLLETLLRT---QKELADASQQLERL 781
Cdd:COG1196    715 ERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLeelERELERLEREIEAL 779
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 1502-2082 9.47e-20

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 96.93  E-value: 9.47e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1502 LEEDLEQIKHSLRERS-QELASQWQLVHERADDGKSPSKGQRGSLEHLKLILRDKEKEVECQQERIQELQGHMGQLEQQL 1580
Cdd:COG1196    218 LKEELKELEAELLLLKlRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAEL 297

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1581 QGLHRKVGETSLLLTHREQETATLQQHLQEAKEQGELREQvlqgQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLK 1660
Cdd:COG1196    298 ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEE----ELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE 373

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1661 TSALQAALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLGDLRAESREHEKAVLALQQRCAEQAQEHEA 1740
Cdd:COG1196    374 LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1741 EARTLQdswlQAQATLTEQEQELAALRAENQYSRRQEEAAVSQAEALQEALSKAQAALQE-KEQSLLEQAELSHTLEAST 1819
Cdd:COG1196    454 LEEEEE----ALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGvKAALLLAGLRGLAGAVAVL 529

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1820 AALQATLDTCQASARQLEEALRIREGEIQAQALQHHEVTQHL--QQELCQKKEELRQLLEKAGARRSQENGIQEKQSLEQ 1897
Cdd:COG1196    530 IGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAgrATFLPLDKIRARAALAAALARGAIGAAVDLVASDLR 609

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1898 ERQEETRRLLESLKELQLTVAQREEEILMLREASSpRHRALPAEKPALQPLPA---QQELERLQTALRQTEAREIEWREK 1974
Cdd:COG1196    610 EADARYYVLGDTLLGRTLVAARLEAALRRAVTLAG-RLREVTLEGEGGSAGGSltgGSRRELLAALLEAEAELEELAERL 688

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1975 AQDLALSLAQSKASISSLQEITMFLQASVLERESEQQRLQEELVLSRQALEEQQsggphstsradqgpkvGQGSQSGEVE 2054
Cdd:COG1196    689 AEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELL----------------EEEELLEEEA 752

                          570       580
                   ....*....|....*....|....*...
gi 1720397337 2055 TEPSPGVEEKERLTQRLERLQQAVAELE 2082
Cdd:COG1196    753 LEELPEPPDLEELERELERLEREIEALG 780
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 1076-1878 2.58e-19

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 95.51  E-value: 2.58e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1076 ARQARDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDLHETAASLQSRLRQAEL 1155
Cdd:TIGR02168  237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLER 316

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1156 QKMEAQNDRELLQASKEKLSAQVEHLQAcvaeaqaqadAAAVLEEDLRTARSALKLKNEELESERERAQALQEQGELKVA 1235
Cdd:TIGR02168  317 QLEELEAQLEELESKLDELAEELAELEE----------KLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS 386

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1236 QGKALQENLALLAQTLSNREREVETLQAEVQELekQREMQKAALELLSLDLKKRSREVDLQQEQIQELEQCRSVLEHLPM 1315
Cdd:TIGR02168  387 KVAQLELQIASLNNEIERLEARLERLEDRRERL--QQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALE 464

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1316 AVQEREQKLSVQRDQIRELENDREAQRSVLEHQLLDLE----------QKAQVIESQRGQIQDL---KKQLGTLECLALE 1382
Cdd:TIGR02168  465 ELREELEEAEQALDAAERELAQLQARLDSLERLQENLEgfsegvkallKNQSGLSGILGVLSELisvDEGYEAAIEAALG 544

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1383 LEESHHKVESQQKMITELEGQREMQRVALTHLTLDLEeRSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDE 1462
Cdd:TIGR02168  545 GRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSI-KGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLG 623

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1463 LQKQQEQLAQALERKGQELvlQKERIQVLEDQRTLQTKILEEDLEQIKHSLRERSQELASQWQLVHERADDgkspskgqr 1542
Cdd:TIGR02168  624 GVLVVDDLDNALELAKKLR--PGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEK--------- 692

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1543 gslehlkliLRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHL-QEAKEQGELREQ- 1620
Cdd:TIGR02168  693 ---------IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIaQLSKELTELEAEi 763

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1621 -VLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELEVE 1699
Cdd:TIGR02168  764 eELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDL 843

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1700 GRQVRALEEVLGDLRAESREHEKAVLALQqrcaEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQYSRRQEEA 1779
Cdd:TIGR02168  844 EEQIEELSEDIESLAAEIEELEELIEELE----SELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEE 919

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1780 AVSQAEALQEALSKAQAALQEKEQSLLEQAELS-HTLEASTAALQATLDTCQASARQLEEALrIREGEIQAQALQHHEVT 1858
Cdd:TIGR02168  920 LREKLAQLELRLEGLEVRIDNLQERLSEEYSLTlEEAEALENKIEDDEEEARRRLKRLENKI-KELGPVNLAAIEEYEEL 998

                          810       820
                   ....*....|....*....|
gi 1720397337 1859 QHLQQELCQKKEELRQLLEK 1878
Cdd:TIGR02168  999 KERYDFLTAQKEDLTEAKET 1018
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 673-1355 4.82e-19

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 94.74  E-value: 4.82e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  673 SLERQKVAHEEEVNRLQEKWEKERSwLQQELDKTLETLERERAELETKLREQQTEMEAIRA------QREEERSQADSAL 746
Cdd:TIGR02168  236 ELREELEELQEELKEAEEELEELTA-ELQELEEKLEELRLEVSELEEEIEELQKELYALANeisrleQQKQILRERLANL 314

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  747 YQMQLETEKERVSLLETLLRTQKELADASQQLERLRQDMKIQKlKEQETTGMLQAQLQETQQELKEAAQQHRDDLAAFQK 826
Cdd:TIGR02168  315 ERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLE-AELEELEAELEELESRLEELEEQLETLRSKVAQLEL 393

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  827 DKLDLQKQVEDLMSQLVAHDDSQRLVKEEIEEKVKVAQ-----ECSRIQKELEKENASLALSLVEKEKRLLILQEADSVR 901
Cdd:TIGR02168  394 QIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEeaelkELQAELEELEEELEELQEELERLEEALEELREELEEA 473

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  902 QQELSSLRQDIQEAQEGQRELGVQVELLRQE---------VKEKEADFVAREAQLLE-ELEASRVAEQQLRASL------ 965
Cdd:TIGR02168  474 EQALDAAERELAQLQARLDSLERLQENLEGFsegvkallkNQSGLSGILGVLSELISvDEGYEAAIEAALGGRLqavvve 553

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  966 -------------WAQEAKATQLQL--------------QLRSTESQLEALVAEQQPENQAQAQLASLCS--VLQQALGS 1016
Cdd:TIGR02168  554 nlnaakkaiaflkQNELGRVTFLPLdsikgteiqgndreILKNIEGFLGVAKDLVKFDPKLRKALSYLLGgvLVVDDLDN 633

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1017 ACESRPELRGGGdsapTLWGPDPDQNGASRLFKRWSLPTALSPEAVALALQKLHQDVWKARQARDDLRDQVQKLVQRLTD 1096
Cdd:TIGR02168  634 ALELAKKLRPGY----RIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEE 709

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1097 TEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDLHETAASLQSRLRQAELQKMEAQNDRELLQASKEKLSA 1176
Cdd:TIGR02168  710 LEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA 789

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1177 QVEHLQACVAEAQAQADAaavLEEDLRTARSALKLKNEELESERERAQALQEQGELKVAQGKALQENLALLAQTLSNRER 1256
Cdd:TIGR02168  790 QIEQLKEELKALREALDE---LRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEE 866

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1257 EVETLQAEVQELEKQREMQKAALELLSLDLKKRSREVDLQQEQIQELEQCRSVLEHLPMAVQEREQKLSVQRDQIRE--- 1333
Cdd:TIGR02168  867 LIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQErls 946

                          730       740       750
                   ....*....|....*....|....*....|....
gi 1720397337 1334 ------------LENDREAQRSVLEHQLLDLEQK 1355
Cdd:TIGR02168  947 eeysltleeaeaLENKIEDDEEEARRRLKRLENK 980
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 701-1273 1.47e-18

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 93.08  E-value: 1.47e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  701 QELDKTLETLERERAELETKLREQQTEMEAIRAQREEERSQADSalyqmqletekervsLLETLLRTQKELADASQQLER 780
Cdd:COG1196    235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEE---------------LELELEEAQAEEYELLAELAR 299

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  781 LRQDMKIQKLKEQettgmlqaQLQETQQELKEAAQQHRDDLAAFQKDKLDLQKQVEDLMSQLVAHDDSQRLVKEEIEEKV 860
Cdd:COG1196    300 LEQDIARLEERRR--------ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  861 KVAQECSRIQKELEKENASLALSLVEKEKRLLILQEADSVRQQELSSLRQDIQEAQEGQRELGVQVELLRQEVKEKEADf 940
Cdd:COG1196    372 AELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE- 450

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  941 VAREAQLLEELEASRVAEQQLRASLWAQEAKATQLQLQLRSTESQLEALVAEQQPENQA--QAQLASLCSVLQQALGSAC 1018
Cdd:COG1196    451 EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGvkAALLLAGLRGLAGAVAVLI 530

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1019 ESRPELRGGGDSAPTLWG-PDPDQNGASRLFKRWSLPTALSPEAVALALQKLHQDVWKARQARDDLRDQVQKLVQRLTDT 1097
Cdd:COG1196    531 GVEAAYEAALEAALAAALqNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLRE 610

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1098 EAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDLHETAASLQSRLRQAELQKMEAQNDRELLQASKEKLSAQ 1177
Cdd:COG1196    611 ADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAE 690

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1178 VEHLQAcvaeaqaqADAAAVLEEDLRTARSALKLKNEELESERERAQALQEQGELKVAQGKALQENLALLAQTLSnRERE 1257
Cdd:COG1196    691 EELELE--------EALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELP-EPPD 761

                          570
                   ....*....|....*.
gi 1720397337 1258 VETLQAEVQELEKQRE 1273
Cdd:COG1196    762 LEELERELERLEREIE 777
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 394-1183 2.79e-18

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 92.43  E-value: 2.79e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  394 VEVAAALARAEQSIVELSGSENSLKAEVAdlraAAVKLGALNEAL-ALDKVELNQQLLQLEQENQSLCSRVEAAEQLRSA 472
Cdd:TIGR02168  182 ERTRENLDRLEDILNELERQLKSLERQAE----KAERYKELKAELrELELALLVLRLEELREELEELQEELKEAEEELEE 257

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  473 LQVDLAEAERRREALWEKKTQLETQLQKAEEAGAELQAELRGTREEKEELKDKLSEAHHQQETATAHLEQLHQDAERQEE 552
Cdd:TIGR02168  258 LTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAE 337

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  553 TLARAVQEKEALVRERAALEVRLQAVERDRQDLTEHVLGLRSAKEQLESNLFEAQQQNSVIQVTKGQLEVQIQTIIQAKE 632
Cdd:TIGR02168  338 ELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRE 417

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  633 viqgevkclklELDAERTRAEQEWDAVARQLAQAEQEGQASLERQKVAHEEEVNRLQEKWEKERSWLQQELDKTLETLER 712
Cdd:TIGR02168  418 -----------RLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQ 486

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  713 ERAE---LETKLREQQTEMEAIRAQ-REEERSQADSALYQMQLETEKERVSLLETLLR------TQKELADASQQLERLR 782
Cdd:TIGR02168  487 LQARldsLERLQENLEGFSEGVKALlKNQSGLSGILGVLSELISVDEGYEAAIEAALGgrlqavVVENLNAAKKAIAFLK 566

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  783 QDmKIQKLKEQETTGMLQAQLQETQQELKEAAQQHRDDLAAFQKDKLDLQKQVEDLMSQLVAHDD---SQRLVKEEIEEK 859
Cdd:TIGR02168  567 QN-ELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDldnALELAKKLRPGY 645

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  860 VKVAQECSRIQKE--LEKENASLALSLVEKEKRLLILQEADSVRQQELSSLRQDIQEAQEGQRELGVQVELLRQEVKEKE 937
Cdd:TIGR02168  646 RIVTLDGDLVRPGgvITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS 725

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  938 ADFVAREAQLLEELEASRVAEQ---QLRASLWAQEAKATQLQLQLRSTESQLEALVAEQQPENQAQAQLASLCSVLQQAL 1014
Cdd:TIGR02168  726 RQISALRKDLARLEAEVEQLEEriaQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL 805

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1015 GSACESRPELRGggdsaptlwgpdpdqngasrlfkrwslptalspeavalALQKLHQDVWKARQARDDLRDQVQKLVQRL 1094
Cdd:TIGR02168  806 DELRAELTLLNE--------------------------------------EAANLRERLESLERRIAATERRLEDLEEQI 847

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1095 TDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDLHETAASLQSRLRQAELQKMEAQNDRELLQASKEKL 1174
Cdd:TIGR02168  848 EELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQL 927


                   ....*....
gi 1720397337 1175 SAQVEHLQA 1183
Cdd:TIGR02168  928 ELRLEGLEV 936
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 1108-1877 1.38e-17

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 90.12  E-value: 1.38e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1108 LQDLQRQLSQSQEEKS-KWEGRQNSLESELRDLHEtaasLQSRLRQAELQKMEAQNDRELLQASKEKLSAQVEHLQAcva 1186
Cdd:TIGR02168  202 LKSLERQAEKAERYKElKAELRELELALLVLRLEE----LREELEELQEELKEAEEELEELTAELQELEEKLEELRL--- 274

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1187 eaqaqadAAAVLEEDLRTARSALKLKNEELESERERAQALQEQGELKVAQGKALQENLALLAQTLSNREREVETLQAEVQ 1266
Cdd:TIGR02168  275 -------EVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLE 347

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1267 ELEKQREMQKAALEllsldlkkrsREVDLQQEQIQELEQCRSVLEHLPMAVQEREQKLSVQRDQIRELENdrEAQRSVLE 1346
Cdd:TIGR02168  348 ELKEELESLEAELE----------ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEA--RLERLEDR 415

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1347 HQLLDLEQKAQVIESQRGQIQDLKKQLGTLECLALELEESHHKVESQQKmitELEGQREMQRVALTHLTLDLEERSQELQ 1426
Cdd:TIGR02168  416 RERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALE---ELREELEEAEQALDAAERELAQLQARLD 492

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1427 AQSSQLHELENHSTHLAKELQERDQeVTSQRQQIDELQKQQEQLAQALERKGQELVL---------QKERIQVLEDQRTL 1497
Cdd:TIGR02168  493 SLERLQENLEGFSEGVKALLKNQSG-LSGILGVLSELISVDEGYEAAIEAALGGRLQavvvenlnaAKKAIAFLKQNELG 571

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1498 QTKILEEDLEQIKHSLRERSQELASQWQLVHERADDGKSPSKGQR--GSLEHLKLILRDKEKEVECQ-----QERIQELQ 1570
Cdd:TIGR02168  572 RVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKalSYLLGGVLVVDDLDNALELAkklrpGYRIVTLD 651

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1571 GHM-----------GQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQGELREQV---LQGQLEEAQRDLAQR 1636
Cdd:TIGR02168  652 GDLvrpggvitggsAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEEleqLRKELEELSRQISAL 731

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1637 DHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLGDLRAE 1716
Cdd:TIGR02168  732 RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE 811

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1717 SREHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAqATLTEQEQELAALRAENQYSRRQEEAAVSQAEALQEALSKAQA 1796
Cdd:TIGR02168  812 LTLLNEEAANLRERLESLERRIAATERRLEDLEEQI-EELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALA 890

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1797 ALQEKEQSL-LEQAELSHTLEASTAALQAtLDTCQASARQLEEALRIREGEIQAQALQHHEVTQHLQQELCQKKEELRQL 1875
Cdd:TIGR02168  891 LLRSELEELsEELRELESKRSELRRELEE-LREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEE 969


                   ..
gi 1720397337 1876 LE 1877
Cdd:TIGR02168  970 AR 971
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 673-1476 1.73e-17

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 89.73  E-value: 1.73e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  673 SLERQKvaheEEVNRLQEKWEKERSWLQQELDKTLETLERERAELETKLREQQTEMEAIRAQREEERSQADsalyqmqlE 752
Cdd:TIGR02168  204 SLERQA----EKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLE--------E 271

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  753 TEKERVSLLETLLRTQKELADASQQLERLRQDMKIQKlKEQETTGMLQAQLQETQQELKEAAQQHRDDLAAFQKDKLDLQ 832
Cdd:TIGR02168  272 LRLEVSELEEEIEELQKELYALANEISRLEQQKQILR-ERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  833 KQVEDLMSQLVAHDDSQRLVKEEIEEKVKVAQECSRIQKELEKENASLALSLVEKEKRLLILQEADSVRQQELSSLRQDI 912
Cdd:TIGR02168  351 EELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKL 430

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  913 QEAQegQRELGVQVELLRQEVKEKEADFVAREAQLLEELEASRVAEQQLRASlwaqEAKATQLQLQLRSTESQLEALVAE 992
Cdd:TIGR02168  431 EEAE--LKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAA----ERELAQLQARLDSLERLQENLEGF 504

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  993 QQPENQ---AQAQLASLCSVLQQ--------------ALGS---------------ACESRPELRGGGDSAPTLWGPDPD 1040
Cdd:TIGR02168  505 SEGVKAllkNQSGLSGILGVLSElisvdegyeaaieaALGGrlqavvvenlnaakkAIAFLKQNELGRVTFLPLDSIKGT 584

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1041 QNGASRLFKRWSLPTALS--------PEAVALALQKLHQDVWKARQARDDLRDQVQK-------------------LVQR 1093
Cdd:TIGR02168  585 EIQGNDREILKNIEGFLGvakdlvkfDPKLRKALSYLLGGVLVVDDLDNALELAKKLrpgyrivtldgdlvrpggvITGG 664

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1094 LTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDLHETAASLQSRLRQAELQKMEAQNDRELLQASKEK 1173
Cdd:TIGR02168  665 SAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ 744

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1174 LSAQVEHLQAcvaEAQAQADAAAVLEEDLRTARSALKLKNEELESERERAQALQEQGELKVAQGKALQENLALLAQTLSN 1253
Cdd:TIGR02168  745 LEERIAQLSK---ELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAAN 821

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1254 REREVETLQAEVQELEKQREMQKAALELLSLDLKKRSREVDLqqeqiqeleqcrsvLEHLPMAVQEREQKLSVQRDQIRE 1333
Cdd:TIGR02168  822 LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEE--------------LEELIEELESELEALLNERASLEE 887

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1334 LENDREAQRSVLEHQLLDLEQKAQVIESQRGQIQDLKKQLGTLECLALEleeshhKVESQQKMITElEGQREMQRVALTH 1413
Cdd:TIGR02168  888 ALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEV------RIDNLQERLSE-EYSLTLEEAEALE 960

                          810       820       830       840       850       860       870
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720397337 1414 LTLDLEERSQElqaqsSQLHELENHSTHL----------AKELQERDQEVTsqrQQIDELQKQQEQLAQALER 1476
Cdd:TIGR02168  961 NKIEDDEEEAR-----RRLKRLENKIKELgpvnlaaieeYEELKERYDFLT---AQKEDLTEAKETLEEAIEE 1025
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 194-723 3.15e-17

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 88.84  E-value: 3.15e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  194 DRALTLVQSVLTRRQQAVQDLRQQLSGCQEAMSFLQQQHDQWEEEGRALREKLQKLTGERDALAGQTVGLQGEVDSLTGE 273
Cdd:COG1196    259 EAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE 338

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  274 RDALAGQTVDLQGEVDSLSRERELLQKARGELQQQLEVLEQEAWRLRRMNMELQLQGDSAQGEKLEQQEELHLAVRERER 353
Cdd:COG1196    339 LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLER 418

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  354 LQETLVGLEAKQSESLSELLTLREALESSRLEGELLKQERVEVAAALARAEQSIVELSGSENSLKAEVADLRAAAVKLGA 433
Cdd:COG1196    419 LEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE 498

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  434 LNEALALDKVELNQQLLQLEQENQSLCSRVEAAEQLRSALQVDLAEAERRREALWEKKTQLETQLQKAEEAGAELQAELR 513
Cdd:COG1196    499 AEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLP 578

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  514 GTREEKEElkdkLSEAHHQQETATAHLEQLHQDAERQEETLARAVQEKEALVRERAALEVRLQAVERDRQDLTEHVLGLR 593
Cdd:COG1196    579 LDKIRARA----ALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGE 654

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  594 SAKEQLESNLFEAQQQNSVIQVTKGQLEVQIQTIIQAKEviqgevkclKLELDAERTRAEQEWDAVARQLAQAEQEGQAS 673
Cdd:COG1196    655 GGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEEL---------ELEEALLAEEEEERELAEAEEERLEEELEEEA 725

                          490       500       510       520       530
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1720397337  674 LERQKVAHEEEVNRLQEKWEKERSWLQQE---LDKTLETLERERAELETKLRE 723
Cdd:COG1196    726 LEEQLEAEREELLEELLEEEELLEEEALEelpEPPDLEELERELERLEREIEA 778
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 1200-1961 8.86e-17

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 87.42  E-value: 8.86e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1200 EDLRTARSALKLKNEELESERERAQALQEQGELKVAQGKALQENLALLAQTLsnrEREVETLQAEVQELEKQREMQKAAL 1279
Cdd:TIGR02168  235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEEL---QKELYALANEISRLEQQKQILRERL 311

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1280 ELLSLDLKKRSREVDLQQEQiqeleqcrsvLEHLPMAVQEREQKLSVQRDQIRELENDREAQRSVLEHQLLDLEQKAQVI 1359
Cdd:TIGR02168  312 ANLERQLEELEAQLEELESK----------LDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL 381

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1360 ESQRGQIQDLKKQLgtleclaleleeshhkvESQQKMITELEGQREMQRVALTHLTLDLEERSQELQaqSSQLHELENHS 1439
Cdd:TIGR02168  382 ETLRSKVAQLELQI-----------------ASLNNEIERLEARLERLEDRRERLQQEIEELLKKLE--EAELKELQAEL 442

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1440 THLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERKGQELVLQKERIQVLEDQRTLQTKiLEEDLEQIKHSLRERSQE 1519
Cdd:TIGR02168  443 EELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG-FSEGVKALLKNQSGLSGI 521

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1520 LASQWQLVHERADDGKSPSKGQRGSLEHLklILRDKEKEVECQQERIQELQGHMGQLE--------------QQLQGLHR 1585
Cdd:TIGR02168  522 LGVLSELISVDEGYEAAIEAALGGRLQAV--VVENLNAAKKAIAFLKQNELGRVTFLPldsikgteiqgndrEILKNIEG 599

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1586 KVGETSLLLTHREQETATLQ---------QHLQEAKEQ-----GELREQVLQGQLEEAQRDLAQRDHELETLRQEKQQTQ 1651
Cdd:TIGR02168  600 FLGVAKDLVKFDPKLRKALSyllggvlvvDDLDNALELakklrPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREI 679

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1652 DQEESmklKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLGDLRAEsrehekavlalQQRC 1731
Cdd:TIGR02168  680 EELEE---KIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE-----------VEQL 745

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1732 AEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQSLLEQAEL 1811
Cdd:TIGR02168  746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRER 825

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1812 SHTLEASTAALQATLDTCQASARQLEEALRIREGEIQAQALQHHEVTQHLQQELCQKKEELRQLLEKAGARRSQENGIQE 1891
Cdd:TIGR02168  826 LESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRE 905

                          730       740       750       760       770       780       790
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720397337 1892 KQSLEQERQEETRRLLESLKELQLTVAQREEEILMLREASSPRHRALPAEKPALQPL------PAQQELERLQTAL 1961
Cdd:TIGR02168  906 LESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKieddeeEARRRLKRLENKI 981
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 1060-1703 1.36e-16

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 86.53  E-value: 1.36e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1060 EAVALALQKLHQDVWKARQARDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDL 1139
Cdd:COG1196    228 ELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARL 307

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1140 HETAASLQSRLRQAELQKMEAQNDRELLQASKEKLSAQVEHLQAcvaEAQAQADAAAVLEEDLRTARSALKLKNEELESE 1219
Cdd:COG1196    308 EERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEE---ELEEAEAELAEAEEALLEAEAELAEAEEELEEL 384

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1220 RERAQALQEQGELKVAQGKALQENLALLAQTLSNREREVETLQAEVQELEKQREMQKAALEllsldlkkrsrevdlqqeq 1299
Cdd:COG1196    385 AEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE------------------- 445

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1300 iqeleqcrsvlehlpmAVQEREQKLSVQRDQIRELENDREAQRSVLEHQLLDLEQKAQVIESQRGQIQDLKKQLGTLECL 1379
Cdd:COG1196    446 ----------------EAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG 509

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1380 ALELEESHHKVESQQKMITELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHElenhstHLAKELQERDQEVtsQRQQ 1459
Cdd:COG1196    510 VKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIE------YLKAAKAGRATFL--PLDK 581

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1460 IDELQKQQEQLAQALERKGQELVLQKERIQVLEDQRTLQTKILEEDLEQIKHSLRERSQELASQWQLVHERADDGKSPSK 1539
Cdd:COG1196    582 IRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGS 661

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1540 GQRGSLEHLKLILRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQGELRE 1619
Cdd:COG1196    662 LTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEEL 741

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1620 QVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESM-KLKTSALQ--AALEQAHATLKERQGELEEHREQVRRLQEEL 1696
Cdd:COG1196    742 LEEEELLEEEALEELPEPPDLEELERELERLEREIEALgPVNLLAIEeyEELEERYDFLSEQREDLEEARETLEEAIEEI 821


                   ....*..
gi 1720397337 1697 EVEGRQV 1703
Cdd:COG1196    822 DRETRER 828
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 240-968 6.90e-16

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 84.34  E-value: 6.90e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  240 RALREKLQKLtgERDALAGQTVGLQGEVDSLTGERDALAGQTVDLQGEVDSLSRERELLQKARGELQQQLEVLEQEawrl 319
Cdd:TIGR02168  216 KELKAELREL--ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKE---- 289

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  320 rrmnmelqLQGDSAQGEKLEQQEELHlaVRERERLQETLVGLEAKQSESLSELLTLREALESSRLEGELLKQERVEVAAA 399
Cdd:TIGR02168  290 --------LYALANEISRLEQQKQIL--RERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAE 359

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  400 LARAEQSIVELSGSENSLKAEVADLRAAAVKLGALNEALALDKVELNQQLLQLEQENQSLCSRVEAAEQLRSALQVDLAE 479
Cdd:TIGR02168  360 LEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQ 439

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  480 AErrrealWEKKTQLETQLQKAEEAGAELQAELRGTREEKEELKDKLSEAHHQQETATAHLEQLHQDAERQEETLARAVQ 559
Cdd:TIGR02168  440 AE------LEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLK 513

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  560 EKEALVRERAALEVRLQAVERDRQDLtEHVLGLRSAKEQLESN-----LFEAQQQNSVIQVTKGQLEVQIQTIIQAK--E 632
Cdd:TIGR02168  514 NQSGLSGILGVLSELISVDEGYEAAI-EAALGGRLQAVVVENLnaakkAIAFLKQNELGRVTFLPLDSIKGTEIQGNdrE 592

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  633 VIQGEVKCLKLELDAERTRAEQEWD--------AVARQLAQAEQEGQASLERQKV----------------AHEEEVNRL 688
Cdd:TIGR02168  593 ILKNIEGFLGVAKDLVKFDPKLRKAlsyllggvLVVDDLDNALELAKKLRPGYRIvtldgdlvrpggvitgGSAKTNSSI 672

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  689 QEKwEKERSWLQQELDKTLET---LERERAELETKLREQQTEMEAIRAQREEERSQADSALYQMQLETEKERvSLLETLL 765
Cdd:TIGR02168  673 LER-RREIEELEEKIEELEEKiaeLEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVE-QLEERIA 750

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  766 RTQKELADASQQLERLRQDMKIQKLKEQETTGmLQAQLQETQQELKEAAQQHRDDLAAFQKDKLDLQKQVEDLMSQLVAH 845
Cdd:TIGR02168  751 QLSKELTELEAEIEELEERLEEAEEELAEAEA-EIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESL 829

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  846 DDSQRLVKEEIEEKVKVAQECSRIQKELEKENASLALSLVEKEKRLLILQEADSVRQQELSSLRQDIQEAQEGQRELGVQ 925
Cdd:TIGR02168  830 ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESK 909

                          730       740       750       760
                   ....*....|....*....|....*....|....*....|...
gi 1720397337  926 VELLRQEVKEKEadfvAREAQLLEELEASRVAEQQLRASLWAQ 968
Cdd:TIGR02168  910 RSELRRELEELR----EKLAQLELRLEGLEVRIDNLQERLSEE 948
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 46-781 8.52e-16

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 84.34  E-value: 8.52e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337   46 EESEPARLLLLVAKTQALEKEAHEKSQELMQLKSHGDLEKAELQDRVTELSALLTQSQKQNEDYEKMVKALRETMEILET 125
Cdd:TIGR02168  220 AELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISR 299

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  126 NHAELMEHEASLSR--------NAQEEKLSLQQVIKAITQALASVEEEDTVTQSSGHEDSLQSDCNGLSQFD--PQDPDR 195
Cdd:TIGR02168  300 LEQQKQILRERLANlerqleelEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELEsrLEELEE 379

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  196 ALTLVQSVLTRRQQAVQDLRQQLSGCQEAMSFLQQQHDQWEEEGRALREKLQKLtgERDALAGQTVGLQGEVDSLTGERD 275
Cdd:TIGR02168  380 QLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA--ELKELQAELEELEEELEELQEELE 457

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  276 ALAGQTVDLQGEVDSLSRERELLQKARGELQQQLEVLEQEAWRLRR--------MNMELQLQGDSAQ-GEKLEQQEELHL 346
Cdd:TIGR02168  458 RLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGfsegvkalLKNQSGLSGILGVlSELISVDEGYEA 537

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  347 AVRE--RERLQETLV-GLEAKQS--ESLSELLTLREA-LESSRLEGELLKQERVEVAAALARAEQSIVELSGSENSLKAE 420
Cdd:TIGR02168  538 AIEAalGGRLQAVVVeNLNAAKKaiAFLKQNELGRVTfLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKA 617

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  421 VADLRAAAVKLGALNEALALDKVELNQQLLQLEQENQ-----SLCSRVEAAEQLRSALQVDLAEAERRREALWEKKTQLE 495
Cdd:TIGR02168  618 LSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLvrpggVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELE 697

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  496 TQLQKAEEAGAELQAELRGTREEKEELKDKLSEAHHQQETATAHLEQLHQDAERQEETLARAVQEKEALVRERAALEVRL 575
Cdd:TIGR02168  698 KALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEEL 777

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  576 QAVERDRQDLTEHVLGLRSAKEQLESNLFEAQQQNSVIQVTKGQLEVQIQTIIQAKEVIQGEVKclklELDAERTRAEQE 655
Cdd:TIGR02168  778 AEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE----DLEEQIEELSED 853

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  656 WDAVARQLAQaEQEGQASLERQKVAHEEEVNRLQEKWEKERSwLQQELDKTLETLERERAELETKLREQQTEMEAIRAQR 735
Cdd:TIGR02168  854 IESLAAEIEE-LEELIEELESELEALLNERASLEEALALLRS-ELEELSEELRELESKRSELRRELEELREKLAQLELRL 931

                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1720397337  736 EEERSQAD------SALYQMQLETEKERVSLLETLL-RTQKELADASQQLERL 781
Cdd:TIGR02168  932 EGLEVRIDnlqerlSEEYSLTLEEAEALENKIEDDEeEARRRLKRLENKIKEL 984
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 625-1181 1.45e-15

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 83.45  E-value: 1.45e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  625 QTIIQAKEVIQGEVKCLKLE-LDAERTRAEQEWDAVARQLAQAE---QEGQASLERQKVAHEE---EVNRLQEKWEKERS 697
Cdd:COG1196    216 RELKEELKELEAELLLLKLReLEAELEELEAELEELEAELEELEaelAELEAELEELRLELEElelELEEAQAEEYELLA 295

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  698 WLQQE------LDKTLETLERERAELETKLREQQTEMEAIRAQREEERSQADSALYQMQlETEKERVSLLETLLRTQKEL 771
Cdd:COG1196    296 ELARLeqdiarLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELE-EAEAELAEAEEALLEAEAEL 374

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  772 ADASQQLERLRQDmKIQKLKEQETTGMLQAQLQETQQELKEAAQQHRDDLAAFQKDKLDLQKQVEDLMSQLVAHDDSQRL 851
Cdd:COG1196    375 AEAEEELEELAEE-LLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  852 VKEEIEEKVKVAQECSRIQKELEKENASLALSLVEKEKRLLILQEADSVRQQELSSLRQdiQEAQEGQRELGVQVELLRQ 931
Cdd:COG1196    454 LEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKA--ALLLAGLRGLAGAVAVLIG 531

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  932 EVKEKEADFVAREAQLLEELEASRVAEQQLRASLWAQEAKAtqlqlqlRSTESQLEALVAEQQPENQAQAQLASLCSVLQ 1011
Cdd:COG1196    532 VEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAG-------RATFLPLDKIRARAALAAALARGAIGAAVDLV 604

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1012 QALGSACESRPELRGGGDSAPTLWGPDPDQNGASR-----LFKRWSLPTALSPEAVALALQKLHQDVWKARQARDDLRDQ 1086
Cdd:COG1196    605 ASDLREADARYYVLGDTLLGRTLVAARLEAALRRAvtlagRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEEL 684

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1087 VQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDLHETAASLQSRLRQAELQKMEAQNDREL 1166
Cdd:COG1196    685 AERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEE 764

                          570
                   ....*....|....*
gi 1720397337 1167 LQASKEKLSAQVEHL 1181
Cdd:COG1196    765 LERELERLEREIEAL 779
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 51-601 1.12e-14

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 80.37  E-value: 1.12e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337   51 ARLLLLVAKTQALEKEAHEKSQELMQLkshgDLEKAELQDRVTELSALLTQSQKQNEDYEKMVKALRETMEILETNHAEL 130
Cdd:COG1196    253 AELEELEAELAELEAELEELRLELEEL----ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAEL 328

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  131 MEHEASLSRNAQEEKLSLQQVIKAITQALASVEEEDTVTQSSghedslqsdcnglsqfdpqdpDRALTLVQSVLTRRQQA 210
Cdd:COG1196    329 EEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA---------------------EAELAEAEEELEELAEE 387

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  211 VQDLRQQLSGCQEAMSFLQQQHDQWEEEGRALREKLQKLTGERDALAGQTVGLQGEVDSLTGERDALAGQTVDLQGEVDS 290
Cdd:COG1196    388 LLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  291 LSRERELLQKARGELQQQLEVLEQEAWRLRRMNMELQLQGDSAQGEKLEQQEELHLAVRERERLQETLVGLEAKQSESLS 370
Cdd:COG1196    468 LLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAA 547

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  371 ELLTLREALESSRLEGELLKQERVEVAAALARAEQSIVELSGSENSLKAEVADLRAAAVKLGALNEALALDKVELNQQLL 450
Cdd:COG1196    548 LQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTL 627

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  451 QLEQENQSLCSRVEAAEQLRSALQVDLAEAERRREALWEKKTQLETQLQKAEEAGAELQAELRGTREEKEELKDKLSEAH 530
Cdd:COG1196    628 VAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEER 707

                          490       500       510       520       530       540       550
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720397337  531 HQQETATAHLEQLHQDAERQEETLARAVQEKEALVRERAALEVRLQAVERDRQDLTEHVLGLRSAKEQLES 601
Cdd:COG1196    708 ELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 263-952 3.36e-14

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 78.95  E-value: 3.36e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  263 LQGEVDSLTGERDALAGQTVDLQGEVDSLSRERELLQKARGELQQQLEVLEQEAWRLRRMNMELQLQGDSAQGEKLEQQE 342
Cdd:TIGR02168  244 LQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEA 323

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  343 ELHLAVRERERLQETLVGLEAKQSESLSELLTLREALESSRLEGELLKQERVEVAAALARAEQSIVELSGSENSLKAEVA 422
Cdd:TIGR02168  324 QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE 403

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  423 DLRAaavKLGALNEALA-LDKVELNQQLLQLEQENQSLCSRVEAAEQLRSALQVDLAEAERRREALWEKKTQLETQLQKA 501
Cdd:TIGR02168  404 RLEA---RLERLEDRRErLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAA 480

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  502 EEAGAELQAELRGT---REEKEELKDKLSEAHHQQETATAHLEQLHQDAERQE-------------------ETLARAVQ 559
Cdd:TIGR02168  481 ERELAQLQARLDSLerlQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEgyeaaieaalggrlqavvvENLNAAKK 560

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  560 EKEALVRERA----------ALEVRLQAVERDRQDLTEHVLG----LRSAKEQLESNLFEAQQQNSVIQVTKGQLEVQIQ 625
Cdd:TIGR02168  561 AIAFLKQNELgrvtflpldsIKGTEIQGNDREILKNIEGFLGvakdLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKK 640

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  626 T------------IIQAKEVIQG---EVKCLKLELDAERTRAEQEWDAVARQLAQAEQEGQASLERQKVAHEEEVNRLQE 690
Cdd:TIGR02168  641 LrpgyrivtldgdLVRPGGVITGgsaKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKE 720

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  691 KWEKERswLQQELDKTLETLERERAELETKLREQQTEMEAIRAQREEERSQADSALYQMQlETEKERVSLLETLLRTQKE 770
Cdd:TIGR02168  721 LEELSR--QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELA-EAEAEIEELEAQIEQLKEE 797

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  771 LADASQQLERLR---QDMKIQKLKEQETTGMLQAQLQETQQELKEAAQQHRD---DLAAFQKDKLDLQKQVEDLMSQLVA 844
Cdd:TIGR02168  798 LKALREALDELRaelTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEElseDIESLAAEIEELEELIEELESELEA 877

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  845 HDDSQRLVKEEIEEKVKVAQECSRIQKELEKENaslalslVEKEKRLLILQEADSVRQQELSSLRQDIQEAQEgqrELGV 924
Cdd:TIGR02168  878 LLNERASLEEALALLRSELEELSEELRELESKR-------SELRRELEELREKLAQLELRLEGLEVRIDNLQE---RLSE 947

                          730       740
                   ....*....|....*....|....*...
gi 1720397337  925 QVELLRQEVKEKEADFVAREAQLLEELE 952
Cdd:TIGR02168  948 EYSLTLEEAEALENKIEDDEEEARRRLK 975
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 1241-2081 6.71e-14

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 77.79  E-value: 6.71e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1241 QENLALLAQTLSNREREVETLQAEVQELEKQREMQK----AALELLSLDLKKRSREVDLQQEQIQELeqcRSVLEHLPMA 1316
Cdd:TIGR02168  185 RENLDRLEDILNELERQLKSLERQAEKAERYKELKAelreLELALLVLRLEELREELEELQEELKEA---EEELEELTAE 261

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1317 VQEREQKLSVQRDQIRELEND-REAQRSVLEHQLL--DLEQKAQVIESQRGQIQDLKKQLGTLECLALEleeshhKVESQ 1393
Cdd:TIGR02168  262 LQELEEKLEELRLEVSELEEEiEELQKELYALANEisRLEQQKQILRERLANLERQLEELEAQLEELES------KLDEL 335

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1394 QKMITELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQA 1473
Cdd:TIGR02168  336 AEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDR 415

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1474 LERKGQELVLQKERIQVLE----DQRTLQTKILEEDLEQIKHSLRERSQELASQWQLVHERADDGKSPSKGQRGSLEHLK 1549
Cdd:TIGR02168  416 RERLQQEIEELLKKLEEAElkelQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLE 495

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1550 LILRDKEKEVECQQERIQE---LQGHMGQLEQQL-------QGLHRKVGETSLLLTHREQETATLQQHLQEAKEQGelRE 1619
Cdd:TIGR02168  496 RLQENLEGFSEGVKALLKNqsgLSGILGVLSELIsvdegyeAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELG--RV 573

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1620 QVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAH-----ATLKERQGELEEHREQVRRLQE 1694
Cdd:TIGR02168  574 TFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLvvddlDNALELAKKLRPGYRIVTLDGD 653

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1695 ELEVEGRQVRALEE---VLGDLRAESREHEKAVLALQQRCAE---QAQEHEAEARTLQDSWLQAQATLTEQEQELAALRA 1768
Cdd:TIGR02168  654 LVRPGGVITGGSAKtnsSILERRREIEELEEKIEELEEKIAElekALAELRKELEELEEELEQLRKELEELSRQISALRK 733

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1769 ENQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLEEALRIREGEIQ 1848
Cdd:TIGR02168  734 DLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT 813

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1849 AQALQHHEVTQHLQQELcQKKEELRQLLEKAGARRSQENGIQEKQSLEQERQEETRRLLES-LKELQLTVAQREEEILML 1927
Cdd:TIGR02168  814 LLNEEAANLRERLESLE-RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESeLEALLNERASLEEALALL 892

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1928 REassprhralpaekpalqplpaqqELERLQTALRQTEAREIEWREKAQDLALSLAQSKASISSLQeitmflqasvLERE 2007
Cdd:TIGR02168  893 RS-----------------------ELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLE----------VRID 939

                          810       820       830       840       850       860       870
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720397337 2008 SEQQRLQEELVLSRQaleeqqsggphstsradqgpkvgqgsqsgEVETEPSPGVEEKERLTQRLERLQQAVAEL 2081
Cdd:TIGR02168  940 NLQERLSEEYSLTLE-----------------------------EAEALENKIEDDEEEARRRLKRLENKIKEL 984
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 1389-2110 7.32e-13

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 74.71  E-value: 7.32e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1389 KVESQQKMITELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQE 1468
Cdd:TIGR02168  233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLA 312

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1469 QLAQALERKGQELVLQKERIQVLEDQRTLQTKILEEDLEQIKhSLRERSQELASQWQLVHERADDGKSPSKGQRGSLEHL 1548
Cdd:TIGR02168  313 NLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELE-SLEAELEELEAELEELESRLEELEEQLETLRSKVAQL 391

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1549 KLILRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHRE-QETATLQQHLQEAKEQGELREQVLQGQLE 1627
Cdd:TIGR02168  392 ELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEELQEELERLEEALEELREELE 471

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1628 EAQRDLAQRDHELETLRQEKQQTQDQEEsmklktsalqaALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQVRALE 1707
Cdd:TIGR02168  472 EAEQALDAAERELAQLQARLDSLERLQE-----------NLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIE 540

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1708 EVLGdlraesrEHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTeqeqelAALRAENQYSRRQEEAAVSQAEAL 1787
Cdd:TIGR02168  541 AALG-------GRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKG------TEIQGNDREILKNIEGFLGVAKDL 607

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1788 QEALSKAQAALQ---------EKEQSLLEQAELSH------TLEASTAALQATL----DTCQASARQLEEALRIREGEIQ 1848
Cdd:TIGR02168  608 VKFDPKLRKALSyllggvlvvDDLDNALELAKKLRpgyrivTLDGDLVRPGGVItggsAKTNSSILERRREIEELEEKIE 687

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1849 AQALQHHEVTQHLQ---QELCQKKEELRQLL-EKAGARRSQENGIQEKQSLEQERQEETRRLLESLKELQLTVAQREEEI 1924
Cdd:TIGR02168  688 ELEEKIAELEKALAelrKELEELEEELEQLRkELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE 767

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1925 LMLREASSPRHRALpAEKPALQplpaqQELERLQTALRQTEAREIEWREKAQDLALSLAQSKASISSLQEITMFLQASVL 2004
Cdd:TIGR02168  768 ERLEEAEEELAEAE-AEIEELE-----AQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 2005 ERESEQQRLQEELVLSRQALEEQQSGGPHSTSRADQGPKVGQGSQsgevetepspgvEEKERLTQRLERLQQAVAELEVD 2084
Cdd:TIGR02168  842 DLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLE------------EALALLRSELEELSEELRELESK 909

                          730       740
                   ....*....|....*....|....*.
gi 1720397337 2085 RSKLQCHNAQLRTALEQVERERRKLK 2110
Cdd:TIGR02168  910 RSELRRELEELREKLAQLELRLEGLE 935
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 856-1729 1.25e-12

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 73.94  E-value: 1.25e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  856 IEEKVKVAQECSRIQKEL-EKENASLALSLVEKEKRLLILQEADSVRQQELSSLRQDIQEAQEGQRELgvqvELLRQEVK 934
Cdd:TIGR02168  205 LERQAEKAERYKELKAELrELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEEL----RLEVSELE 280

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  935 EKEADFVAREAQLLEELEASRVAEQQLRASLWAQEAKATQLQLQLRSTESQLEALVAEQQPENQAQAQLASLCSVLQQAL 1014
Cdd:TIGR02168  281 EEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL 360

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1015 GSACESRPELRGGgdsaptlwgpdpdqngasrlfkrwslptalsPEAVALALQKLHQDVWKARQARDDLRDQVQKLVQRL 1094
Cdd:TIGR02168  361 EELEAELEELESR-------------------------------LEELEEQLETLRSKVAQLELQIASLNNEIERLEARL 409

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1095 TDTEAQKSQVHSELQDLQRQLSQSQEEKSkwEGRQNSLESELRDLHETAASLQSRLRQAELQKMEAQNDRELLQASKEKL 1174
Cdd:TIGR02168  410 ERLEDRRERLQQEIEELLKKLEEAELKEL--QAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1175 SAQVEHLQACVAEAqaqadaaavleEDLRTARSALKLKNEELESERERAQALQE-QGELKVAQGKALQENLALLAqtlsn 1253
Cdd:TIGR02168  488 QARLDSLERLQENL-----------EGFSEGVKALLKNQSGLSGILGVLSELISvDEGYEAAIEAALGGRLQAVV----- 551

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1254 rereVETLQAEVQELEKQREMQKAALELLSLDLKKRSREVDLQQEQIQELEQCRSVLEHLPMAVQEREQKLSVQRDQIRE 1333
Cdd:TIGR02168  552 ----VENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLV 627

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1334 LENDREA--QRSVLEHQLLDL-----------------EQKAQVIESQRGQIQDLKKQLGTLEClaleleeshhKVESQQ 1394
Cdd:TIGR02168  628 VDDLDNAleLAKKLRPGYRIVtldgdlvrpggvitggsAKTNSSILERRREIEELEEKIEELEE----------KIAELE 697

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1395 KMITELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQAL 1474
Cdd:TIGR02168  698 KALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEEL 777

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1475 ERKGQELVLQKERIQVLEDQRTLQTKILEEdLEQIKHSLRERSQELASQWQLVHERADDgkspskgQRGSLEHLKLILRD 1554
Cdd:TIGR02168  778 AEAEAEIEELEAQIEQLKEELKALREALDE-LRAELTLLNEEAANLRERLESLERRIAA-------TERRLEDLEEQIEE 849

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1555 KEKEVECQQERIQELQGHMGQLEQQLQGLhrkvgetslllthrEQETATLQQHLQEAKEQGELREQVLQ---GQLEEAQR 1631
Cdd:TIGR02168  850 LSEDIESLAAEIEELEELIEELESELEAL--------------LNERASLEEALALLRSELEELSEELReleSKRSELRR 915

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1632 DLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKE-RQGELEEHREQVRRLQEELEVEGR-------QV 1703
Cdd:TIGR02168  916 ELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENkIEDDEEEARRRLKRLENKIKELGPvnlaaieEY 995

                          890       900
                   ....*....|....*....|....*.
gi 1720397337 1704 RALEEVLGDLRAESREHEKAVLALQQ 1729
Cdd:TIGR02168  996 EELKERYDFLTAQKEDLTEAKETLEE 1021
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 318-1025 1.28e-12

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 73.55  E-value: 1.28e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  318 RLRRMNMELQLQGDsAQGEKLEQQEELHLAVRERERLQETLVGLEAKQSE-SLSELLTLREALESSRLEGELLKQERVEV 396
Cdd:TIGR02168  180 KLERTRENLDRLED-ILNELERQLKSLERQAEKAERYKELKAELRELELAlLVLRLEELREELEELQEELKEAEEELEEL 258

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  397 AAALARAEQSIVELSGSENSLKAEVADLRAAAVKLGALNEALALDKVELNQQLLQLEQENQSLCSRVEAAEQLRSALQVD 476
Cdd:TIGR02168  259 TAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE 338

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  477 LAEAERRREALWEKKTQLETQLQKAEEAGAELQAELRGTREEKEELKDKLSEAHHQQETATAHLEQLHQDAERQEETLAR 556
Cdd:TIGR02168  339 LAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRER 418

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  557 AVQEKEALvrERAALEVRLQAVERDRQDLTEHVLGLRSAKEQLESNLFEAQQQNSVIQVTKGQLEVQIQTIIQAKEVIQg 636
Cdd:TIGR02168  419 LQQEIEEL--LKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLE- 495

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  637 evkclkleldAERTRAEQEWDAVARQLAQAEQEGQAslerqkVAHEEEVNRLQEKWEKE-----RSWLQQELDKTLE--- 708
Cdd:TIGR02168  496 ----------RLQENLEGFSEGVKALLKNQSGLSGI------LGVLSELISVDEGYEAAieaalGGRLQAVVVENLNaak 559

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  709 ----TLERERAELETKLREQQTEMEAIRAQREEERSQADSAL-YQMQLETEKERVS-LLETLL---RTQKELADASQQLE 779
Cdd:TIGR02168  560 kaiaFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLgVAKDLVKFDPKLRkALSYLLggvLVVDDLDNALELAK 639

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  780 RLRQDMKIQKLK--------------EQETTGMLQ-----AQLQETQQELKEAAQQHRDDLAAFQKDKLDLQKQVEDLMS 840
Cdd:TIGR02168  640 KLRPGYRIVTLDgdlvrpggvitggsAKTNSSILErrreiEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRK 719

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  841 QLVAHDDSQRLVKEEIEEKVKVAQECSRIQKELEKENASLALSLVEKEKRLLILQEADSVRQQELSSLRQDIQEAQEgqr 920
Cdd:TIGR02168  720 ELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKE--- 796

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  921 elgvQVELLRQEVKEKEADFvareAQLLEELEASRVAEQQLRASLWAQEAKATQLQLQLRSTESQLEALVAEQQPENQAQ 1000
Cdd:TIGR02168  797 ----ELKALREALDELRAEL----TLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELI 868

                          730       740
                   ....*....|....*....|....*
gi 1720397337 1001 AQLASLCSVLQQALGSACESRPELR 1025
Cdd:TIGR02168  869 EELESELEALLNERASLEEALALLR 893
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 1311-2110 1.40e-12

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 73.61  E-value: 1.40e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1311 EHLPMAVQEREQKLSVQRDQIRELENDREAQRSVLEHQLLDLEQKAQVIESQRGQIQDLKKQLG-TLECLALELEESHHK 1389
Cdd:pfam15921   74 EHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESqSQEDLRNQLQNTVHE 153

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1390 VESQQKMITELEGQREMQRVALTHLTLDLEERSQEL--------QAQSSQLHELENHST--------HLAKELQERDQEV 1453
Cdd:pfam15921  154 LEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIrsilvdfeEASGKKIYEHDSMSTmhfrslgsAISKILRELDTEI 233

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1454 TSQRQQIDELQKQQEQLAQALERKGQELVLQ-KERIQVLEDQRTLQTKILEEDLEqikhSLRERSQELASQWQLVHERAD 1532
Cdd:pfam15921  234 SYLKGRIFPVEDQLEALKSESQNKIELLLQQhQDRIEQLISEHEVEITGLTEKAS----SARSQANSIQSQLEIIQEQAR 309

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1533 DGKSPSKGQRGSLEHLKLILRDKEKEVECQQERIQElqghmgQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAK 1612
Cdd:pfam15921  310 NQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIE------ELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLL 383

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1613 EQGELREQVLQGQLEEAQR-------DLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQ------ 1679
Cdd:pfam15921  384 ADLHKREKELSLEKEQNKRlwdrdtgNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNeslekv 463

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1680 ----GELEEHREQVRRLQEELEVEGRQVRALEEVLGDLRAESREHEKAVlalqqrcaeqaqeheaEARTLQDSWLQAQAT 1755
Cdd:pfam15921  464 ssltAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAI----------------EATNAEITKLRSRVD 527

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1756 LteQEQELAALRAENQYSRRQEeaavSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALqatldtcQASARQ 1835
Cdd:pfam15921  528 L--KLQELQHLKNEGDHLRNVQ----TECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAM-------QVEKAQ 594

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1836 LEEALRIREGEIQAQALQHHEVTQHLqQELCQKKEELRqlLEKAGARRSQENGIQEKQSLEQERQEETRRLLESLKELQl 1915
Cdd:pfam15921  595 LEKEINDRRLELQEFKILKDKKDAKI-RELEARVSDLE--LEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELN- 670

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1916 tVAQREEEILMLREASSPRHRALPAEKPALQPLPAQQELERLQTALRQTEAREIEWREKAQDLALSLAQSKASISSLQEI 1995
Cdd:pfam15921  671 -SLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSK 749

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1996 TMFLQASVLERESEQQRLQEElvlsRQALEEQQSggphstsradqgpkvgqgsqsgEVETEPSPGVEEKERLTQRLERLQ 2075
Cdd:pfam15921  750 IQFLEEAMTNANKEKHFLKEE----KNKLSQELS----------------------TVATEKNKMAGELEVLRSQERRLK 803

                          810       820       830
                   ....*....|....*....|....*....|....*
gi 1720397337 2076 QAVAELEVDRSKLQCHNAQLRTALEQVERERRKLK 2110
Cdd:pfam15921  804 EKVANMEVALDKASLQFAECQDIIQRQEQESVRLK 838
PTZ00121 PTZ00121
MAEBL; Provisional
 287-1000 1.59e-12

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 73.64  E-value: 1.59e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  287 EVDSLSRERELLQKARGELQQQLEVLEQEAWRLRRMNmELQLQGDSAQGEKLEQQEELHLAVREReRLQETLVGLEAKQS 366
Cdd:PTZ00121  1095 EAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAE-EARKAEDARKAEEARKAEDAKRVEIAR-KAEDARKAEEARKA 1172

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  367 ESLSELLTLREALESSRLEgELLKQERVEVAAALARAEQ--SIVELSGSENSLKAEvADLRAAAVKLGAlNEALALDKVE 444
Cdd:PTZ00121  1173 EDAKKAEAARKAEEVRKAE-ELRKAEDARKAEAARKAEEerKAEEARKAEDAKKAE-AVKKAEEAKKDA-EEAKKAEEER 1249

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  445 LNQQLLQLEQENQSLCSRVEA---AEQLRSALQVDLAEAERRREAL--WEKKTQLETQLQKAEEA--GAELQAELRGTRE 517
Cdd:PTZ00121  1250 NNEEIRKFEEARMAHFARRQAaikAEEARKADELKKAEEKKKADEAkkAEEKKKADEAKKKAEEAkkADEAKKKAEEAKK 1329

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  518 EKEELKDKLSEAHHQQETATAHLEQLHQDAERQEETLARAVQEKEAlvRERAALEVRLQAVERDRQDltehvlglrSAKE 597
Cdd:PTZ00121  1330 KADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEE--AKKKADAAKKKAEEKKKAD---------EAKK 1398

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  598 QLESNLFEAQQQNSVIQVTKGQLEVQIQtiiqAKEVIQGEvkclKLELDAERTRAEQEWDAVARQLAQAEQEGQASLERQ 677
Cdd:PTZ00121  1399 KAEEDKKKADELKKAAAAKKKADEAKKK----AEEKKKAD----EAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK 1470

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  678 KVaheeevNRLQEKWEKERSwlQQELDKTLETLERERAELETKLREQQTEMEAIRAqreEERSQADsalyqmQLETEKER 757
Cdd:PTZ00121  1471 KA------DEAKKKAEEAKK--ADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKA---EEAKKAD------EAKKAEEA 1533

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  758 VSLLETLLRTQKELADASQQLERLRQDMKIQKLKEQETTGMLQAQLQETQQELKEAAQQHRDDLAAFQKDKLDLQkqVED 837
Cdd:PTZ00121  1534 KKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMK--AEE 1611

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  838 LMSQLVAHDDSQRLVKEEiEEKVKVAQECSRIQKELEKenaslALSLVEKEKRLLILQEADSVRQQELSSLRQDIQEAQE 917
Cdd:PTZ00121  1612 AKKAEEAKIKAEELKKAE-EEKKKVEQLKKKEAEEKKK-----AEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEE 1685

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  918 GQRElgvqvellRQEVKEKEADFVAREAQLLEELEASRVAEQQLRASLWAQEAKATQLQLQLRSTESQLEALVAEQQPEN 997
Cdd:PTZ00121  1686 DEKK--------AAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKK 1757


                   ...
gi 1720397337  998 QAQ 1000
Cdd:PTZ00121  1758 KIA 1760
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 658-1373 2.04e-12

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 73.18  E-value: 2.04e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  658 AVARQLAQAEQEGQASLERQKVAHEEEVNRLQEKWEKERSWLQqELDKTLETLERERAELEtKLREQQTEMEAIRAQree 737
Cdd:TIGR02169  152 PVERRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIID-EKRQQLERLRREREKAE-RYQALLKEKREYEGY--- 226

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  738 ERSQADSALYQMQLETEKERVSLLETLLRTQKELADASQQLERLRQDMKIQKLKEQETTGMLQAQLQETQQELKEAAQQH 817
Cdd:TIGR02169  227 ELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASL 306

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  818 RDDLAAFQKDKLDLQKQVEDLMSQLVAHDDSQRLVKEEIEEKVKVAQECSRIQKELEKENASLALSLVEKEKRLLILQEA 897
Cdd:TIGR02169  307 ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE 386

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  898 DSVRQQELSSLRQDIQEAQEGQRELGVQVELLRQEVKEKEADFVAREAQLLeELEASRvaeQQLRASLWAQEAKATQLQL 977
Cdd:TIGR02169  387 LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKIN-ELEEEK---EDKALEIKKQEWKLEQLAA 462

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  978 QLRSTESQLEALVAEQqpeNQAQAQLASLCSVLQQALGSACESRPELRGG-------GDSAPTLWG-------------- 1036
Cdd:TIGR02169  463 DLSKYEQELYDLKEEY---DRVEKELSKLQRELAEAEAQARASEERVRGGraveevlKASIQGVHGtvaqlgsvgeryat 539

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1037 ----------------PDPDQNGASRLFKR-----------------WSLPTALSPE------------------AVALA 1065
Cdd:TIGR02169  540 aievaagnrlnnvvveDDAVAKEAIELLKRrkagratflplnkmrdeRRDLSILSEDgvigfavdlvefdpkyepAFKYV 619

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1066 LQK--LHQDVWKARQARDDLR-------------------DQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSK 1124
Cdd:TIGR02169  620 FGDtlVVEDIEAARRLMGKYRmvtlegelfeksgamtggsRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRR 699

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1125 WEGRQNSLESELRDLHETAASLQSRLRQAElqkMEAQNDRELLQASKEKLSAQVEHLQACVAEAQAQADAAAVLEEDLRT 1204
Cdd:TIGR02169  700 IENRLDELSQELSDASRKIGEIEKEIEQLE---QEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHK 776

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1205 ARSAL-----KLKNEELESERERAQALQEQGELKVAQGKALQENLALLAQTLSNREREVETLQAEVQELEKQREMQKAAL 1279
Cdd:TIGR02169  777 LEEALndleaRLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI 856

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1280 ELLSLDLKKRSREVdlqQEQIQELEQCRSVLEHLPMAVQEREQKLSVQRDQIRELendrEAQRSVLEHQLLDLEQKAQVI 1359
Cdd:TIGR02169  857 ENLNGKKEELEEEL---EELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL----EAQIEKKRKRLSELKAKLEAL 929

                          810
                   ....*....|....
gi 1720397337 1360 ESQRGQIQDLKKQL 1373
Cdd:TIGR02169  930 EEELSEIEDPKGED 943
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 194-842 2.21e-12

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 72.78  E-value: 2.21e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  194 DRALTLVQSVLTRRQQAVQDLRQQLSGCQEAMSFLQQQHDQWEEEGRALREKLQKLTGERDALAGQTVGLQGEVDSLTGE 273
Cdd:TIGR02168  259 TAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE 338

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  274 RDALAGQTVDLQGEVDSLSRERELLQKARGELQQQLEVLEQEAWRLRRMNMELQLQGDSAQGEKLEQQEELHLAVRERER 353
Cdd:TIGR02168  339 LAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRER 418

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  354 LQETLVGLEAKQSEslSELLTLREALESSRLEGELLKQERVEVAAALARAEQSIVELSGSENSLKAEVADLRAAAVKLGA 433
Cdd:TIGR02168  419 LQQEIEELLKKLEE--AELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER 496

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  434 L---NEALALDKVELNQQLLQLEQENQSLCSRVEAAEQLRSALQVDLAE------------AERRREALWEKKTQLETQL 498
Cdd:TIGR02168  497 LqenLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGrlqavvvenlnaAKKAIAFLKQNELGRVTFL 576

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  499 QKAEEAGAELQAELRGTREEKEELKDKLSEAHHQQ--------------------ETATAHLEQLHQDA----------- 547
Cdd:TIGR02168  577 PLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDpklrkalsyllggvlvvddlDNALELAKKLRPGYrivtldgdlvr 656

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  548 -----------------ERQEEtLARAVQEKEALVRERAALEVRLQAVERDRQDLTEHVLGLRSAKEQLESNLFEAQQQN 610
Cdd:TIGR02168  657 pggvitggsaktnssilERRRE-IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL 735

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  611 SVIQVTKGQLEVQIQTIIQAKEVIQGEVKCLKLELDAERT---RAEQEWDAVARQLAQAEQEGQAsLERQKVAHEEEVNR 687
Cdd:TIGR02168  736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEelaEAEAEIEELEAQIEQLKEELKA-LREALDELRAELTL 814

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  688 LQEKWEKERSWLQQ------ELDKTLETLERERAELETKLREQQTEMEAIRAQREEERSQADSALYQMQLETE--KERVS 759
Cdd:TIGR02168  815 LNEEAANLRERLESlerriaATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEalALLRS 894

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  760 LLETLLRTQKELADASQQLERLRQDMKIQKLKEQETTGMLQAQLQETQQELKEAAQQHRDDLAAFQKDKLDLQKQVEDLM 839
Cdd:TIGR02168  895 ELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRL 974


                   ...
gi 1720397337  840 SQL 842
Cdd:TIGR02168  975 KRL 977
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 767-1529 3.58e-12

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 72.40  E-value: 3.58e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  767 TQKELADASQQLERLrQDMkIQKLKEQETTGMLQAQLQETQQELKEAAQQHRDDLAAFQKDKLD-----LQKQVEDLMSQ 841
Cdd:TIGR02168  177 TERKLERTRENLDRL-EDI-LNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELReeleeLQEELKEAEEE 254

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  842 LVAHDDSQRLVKEEIEEKVKVAQECSRIQKELEKENASLALSLVEKEKRLLILQEADSVRQQELSSLRQDIQEAQEGQRE 921
Cdd:TIGR02168  255 LEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDE 334

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  922 LGVQVELLRQEVKEKEADFVAREAQLLEELEASRVAEQQLRAS---LWAQEAKATQLQLQLRSTESQLEALVAEQQPENQ 998
Cdd:TIGR02168  335 LAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELeeqLETLRSKVAQLELQIASLNNEIERLEARLERLED 414

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  999 AQAQLASLCSVLQQALGSACESRPELRGGGdsaptlwgpdpdqngasrlFKRWSLPTALSPEAVALALQKLHQDVWKARQ 1078
Cdd:TIGR02168  415 RRERLQQEIEELLKKLEEAELKELQAELEE-------------------LEEELEELQEELERLEEALEELREELEEAEQ 475

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1079 ARDDLRDQVQKLVQRLTDTEAQKSQvHSELQDLQRQLSQSQEEKSKWEGR-------------------QNSLESELRDL 1139
Cdd:TIGR02168  476 ALDAAERELAQLQARLDSLERLQEN-LEGFSEGVKALLKNQSGLSGILGVlselisvdegyeaaieaalGGRLQAVVVEN 554

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1140 HETAASLQSRLRQAELQK-----MEAQNDRELLQASKEKLSAQVEHLQACVAEAQAQADAAAVLE---------EDLRTA 1205
Cdd:TIGR02168  555 LNAAKKAIAFLKQNELGRvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvDDLDNA 634

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1206 rsalklkNEELESERERAQALQEQGEL----KVAQGKALQENLALLAQT--LSNREREVETLQAEVQELEKQREMQKAAL 1279
Cdd:TIGR02168  635 -------LELAKKLRPGYRIVTLDGDLvrpgGVITGGSAKTNSSILERRreIEELEEKIEELEEKIAELEKALAELRKEL 707

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1280 ELLSLDLKKRSREVDLQQEQIQELeqcRSVLEHLPMAVQEREQKLSVQRDQIRELENDREAQRSVLEHQLLDLEQKAQVI 1359
Cdd:TIGR02168  708 EELEEELEQLRKELEELSRQISAL---RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI 784

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1360 ESQRGQIQDLKKQLGTLECLALELEESHH----KVESQQKMITELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHEL 1435
Cdd:TIGR02168  785 EELEAQIEQLKEELKALREALDELRAELTllneEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEEL 864

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1436 ENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERKGQELvlqKERIQVLEDQRTLQTKIlEEDLEQIKHSLRE 1515
Cdd:TIGR02168  865 EELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR---SELRRELEELREKLAQL-ELRLEGLEVRIDN 940

                          810
                   ....*....|....
gi 1720397337 1516 RSQELASQWQLVHE 1529
Cdd:TIGR02168  941 LQERLSEEYSLTLE 954
PTZ00121 PTZ00121
MAEBL; Provisional
 320-877 3.81e-12

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 72.48  E-value: 3.81e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  320 RRMNMELQLQGDSAQGEKLEQQEELHLAVRERERLQETLVGLEAKQ--SESLSELLTLREALESSRLEGELLKQERVEVA 397
Cdd:PTZ00121  1277 ARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKkaEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAA 1356

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  398 AALARAEQ--SIVELSGSENSLKAEVADLRAAAVKLG------ALNEALALDKVELNQQLLQLEQENQSLCSRVEAAEQL 469
Cdd:PTZ00121  1357 DEAEAAEEkaEAAEKKKEEAKKKADAAKKKAEEKKKAdeakkkAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEA 1436

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  470 RSALQVDLAEAERRREAlwEKKTQLETQLQKAEEAGAELQAELRGTREEK-EELKDKLSEAHHQQETATAHLEQLHQDAE 548
Cdd:PTZ00121  1437 KKKAEEAKKADEAKKKA--EEAKKAEEAKKKAEEAKKADEAKKKAEEAKKaDEAKKKAEEAKKKADEAKKAAEAKKKADE 1514

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  549 RQEETLARAVQEKEALVRERAALEVRlQAVERDRQDLTEHVLGLRSAKEQLESNLFEAQQQNSVIQVTKGQLEVQIQtii 628
Cdd:PTZ00121  1515 AKKAEEAKKADEAKKAEEAKKADEAK-KAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAE--- 1590

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  629 QAKEVIQGEVKCLKLELDAERTRAEQEWDAVARQLAQAEQEgQASLERQKVAHEEEVNRlqekwekerswlQQELDKTLE 708
Cdd:PTZ00121  1591 EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEE-KKKVEQLKKKEAEEKKK------------AEELKKAEE 1657

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  709 TLERERAELETKLREQQTEMEAIRAQREEERSQADsalyqmQLETEKERVSLLETLLRTQKELADASQQLERLRQD--MK 786
Cdd:PTZ00121  1658 ENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAE------ALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEEnkIK 1731

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  787 IQKLKEQETTGMLQAQLQETQQELKEAAQQHRDDLaafQKDKLDLQKQVEDLMSQLVAHDDSQRlvKEEIEEKVKVAQEC 866
Cdd:PTZ00121  1732 AEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEE---EKKAEEIRKEKEAVIEEELDEEDEKR--RMEVDKKIKDIFDN 1806

                          570
                   ....*....|.
gi 1720397337  867 SRIQKELEKEN 877
Cdd:PTZ00121  1807 FANIIEGGKEG 1817
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1564-1769 4.94e-12

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 71.87  E-value: 4.94e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1564 ERIQELQGHMGQLEqqlqGLHRKVGETSLLLTHREQETATLQQHLQEAKEQGELREQVLQGQLEEAQRDLAQRDHELETL 1643
Cdd:COG4913    225 EAADALVEHFDDLE----RAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEEL 300

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1644 RQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGE-LEEHREQVRRLQEELEVEGRQVRALEEVLGDLRAESREHEK 1722
Cdd:COG4913    301 RAELARLEAELERLEARLDALREELDELEAQIRGNGGDrLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAE 380

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*..
gi 1720397337 1723 AVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAE 1769
Cdd:COG4913    381 EFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAE 427
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 64-792 1.46e-11

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 70.10  E-value: 1.46e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337   64 EKEAHEKSQELMQLKSHgDLEKAELQDRVTELSALLTQSQKQNEDYEKMVKALRETMEILETNHAELMEHEaslSRNAQE 143
Cdd:TIGR02169  219 EKREYEGYELLKEKEAL-ERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEE---QLRVKE 294

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  144 EKLSLQQVIKAITQALAsvEEEDTVTQSSGHEDSLQSDCNGLsQFDPQDPDRALTLVQSVLTRRQQAVQDLRQQLSGCQE 223
Cdd:TIGR02169  295 KIGELEAEIASLERSIA--EKERELEDAEERLAKLEAEIDKL-LAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRA 371

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  224 AMSFLQQQHDQWEEEGRALREKLQKLTGERDALAGQTVGLQGEVDSLTGERD--------------ALAGQTVDLQGEVD 289
Cdd:TIGR02169  372 ELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELAdlnaaiagieakinELEEEKEDKALEIK 451

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  290 SLSRERELLQKARGELQQQLEVLEQEAWRLRRMNMELQLQGDSAQGEKLEQQEELHLAVRERERLQETLVGLEAkqseSL 369
Cdd:TIGR02169  452 KQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHG----TV 527

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  370 SELLTLRE----ALESSrlEGELLKQERVEVAAALARAEQSIVELSGSE------NSLKAEVADLRAAAVKlGALNEALA 439
Cdd:TIGR02169  528 AQLGSVGEryatAIEVA--AGNRLNNVVVEDDAVAKEAIELLKRRKAGRatflplNKMRDERRDLSILSED-GVIGFAVD 604

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  440 LDKVELNQQLLQLEQENQSLC-SRVEAAEQL---------------RSALQVDLAEAERRRE----ALWEKKTQLETQLQ 499
Cdd:TIGR02169  605 LVEFDPKYEPAFKYVFGDTLVvEDIEAARRLmgkyrmvtlegelfeKSGAMTGGSRAPRGGIlfsrSEPAELQRLRERLE 684

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  500 KAEEAGAELQAELRGTREEKEELKDKLSEAHHQQETATAHLEQLHQDAERQEETLARAVQEKEALVRERAALEVRLQAVE 579
Cdd:TIGR02169  685 GLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELE 764

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  580 RDRQDLTEHVLGLRSAKEQLESNLFEAQQQNSVIQVTKGQLEVQ-IQTIIQAKEVIQGEVKCLKLELDAERTRAEQEWDA 658
Cdd:TIGR02169  765 ARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSrIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRID 844

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  659 VARQLAQAEQEgQASLERQKVAHEEEVNRLQEKWEkerswlqqELDKTLETLERERAELETKLREQQTEMEAIRAQREEE 738
Cdd:TIGR02169  845 LKEQIKSIEKE-IENLNGKKEELEEELEELEAALR--------DLESRLGDLKKERDELEAQLRELERKIEELEAQIEKK 915

                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1720397337  739 RSQAdsALYQMQLETEKERVSLLETLLRTQKELADASQQLERLRqdMKIQKLKE 792
Cdd:TIGR02169  916 RKRL--SELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQ--AELQRVEE 965
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
1201-1719 1.61e-11

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 70.07  E-value: 1.61e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1201 DLRTARSALKLKNEELESERERAQALQEQGELKVAQGKALQENLALLAQ-------TLSNREREVETLQAEVQELEKQRE 1273
Cdd:PRK02224   210 GLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAeiedlreTIAETEREREELAEEVRDLRERLE 289

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1274 M----QKAALELLSLDLKKRSREVDLQQEQIQELEQCRSVLEHLPMAVQEREQKLSVQRDQIRELENDREAQRSVLEHQL 1349
Cdd:PRK02224   290 EleeeRDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELE 369

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1350 LDLEQKAQVIESQRGQIQDLKKQLGTLECLALELEESHHKVESQQKMITE----LEGQREMQRVALTHLTLDLEERSQEL 1425
Cdd:PRK02224   370 SELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREerdeLREREAELEATLRTARERVEEAEALL 449

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1426 QAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERkGQELVLQKERIQVLEDQRTLQTKILEED 1505
Cdd:PRK02224   450 EAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLER-AEDLVEAEDRIERLEERREDLEELIAER 528

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1506 LEQIKH------SLRERSQELASQWQLVHERADDGKSPSKGQRGSLEHLKLILRDKEKEVEcQQERIQELQGHMGQLEQQ 1579
Cdd:PRK02224   529 RETIEEkreraeELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIE-SLERIRTLLAAIADAEDE 607

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1580 LQGLHRKVGETSLLLTHReqetatlQQHLQEAKEQ-GELREQVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMK 1658
Cdd:PRK02224   608 IERLREKREALAELNDER-------RERLAEKRERkRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQ 680

                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720397337 1659 LKTSALQAALEQAhATLKERQGELEEHREQVRRLQEElevegrqVRALEEVLGDLRAESRE 1719
Cdd:PRK02224   681 AEIGAVENELEEL-EELRERREALENRVEALEALYDE-------AEELESMYGDLRAELRQ 733
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
204-758 1.91e-11

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 69.94  E-value: 1.91e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  204 LTRRQQAVQDLRQQLSGCQEAMS-----FLQQQHDQWEEEGRALREKLQKLTGERDALAGQTVGLQGEVDSLTGERDALA 278
Cdd:COG4913    257 IRELAERYAAARERLAELEYLRAalrlwFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNG 336

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  279 GQTVD-LQGEVDSLSRERELLQKARGELQQQLEVL-------EQEAWRLRRMNMELQLQGDSAQGEKLEQQEELHLAV-- 348
Cdd:COG4913    337 GDRLEqLEREIERLERELEERERRRARLEALLAALglplpasAEEFAALRAEAAALLEALEEELEALEEALAEAEAALrd 416

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  349 --RERERLQETLVGLEAKQSESLSELLTLREALESS--------RLEGELLkqervEVAAALARAEQSI-VELSGSENSL 417
Cdd:COG4913    417 lrRELRELEAEIASLERRKSNIPARLLALRDALAEAlgldeaelPFVGELI-----EVRPEEERWRGAIeRVLGGFALTL 491

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  418 KAEVADLRAAAVKLGALNEALALD--KVELNQQLLQLEQ-ENQSLCSRVEAAE------------QLRSALQVDLAEAER 482
Cdd:COG4913    492 LVPPEHYAAALRWVNRLHLRGRLVyeRVRTGLPDPERPRlDPDSLAGKLDFKPhpfrawleaelgRRFDYVCVDSPEELR 571

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  483 R-------------REALWEKKTQLETQLQ-----KAEEAGAELQAELRGTREEKEELKDKLSEAHHQQETATAHLEQLH 544
Cdd:COG4913    572 RhpraitragqvkgNGTRHEKDDRRRIRSRyvlgfDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQ 651

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  545 QDAERQEETLARAvqekeALVRERAALEVRLQAVERDRQDLTEhvlgLRSAKEQLESNLFEAQQQNSVIQVTKGQLEVQI 624
Cdd:COG4913    652 RLAEYSWDEIDVA-----SAEREIAELEAELERLDASSDDLAA----LEEQLEELEAELEELEEELDELKGEIGRLEKEL 722

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  625 QTI------IQAKEVIQGEVKCLKLELDAERTRAEQEWDAVARQLAQAEQEGQASLERQKVAHEEEVNRLQEKWEKERSW 698
Cdd:COG4913    723 EQAeeeldeLQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPA 802

                          570       580       590       600       610       620
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  699 LQQELDKTLETLERERAELETKLREQQTEMEAIRAQREEERSQADSALYQMQLETEKERV 758
Cdd:COG4913    803 ETADLDADLESLPEYLALLDRLEEDGLPEYEERFKELLNENSIEFVADLLSKLRRAIREI 862
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 298-1014 2.14e-11

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 69.71  E-value: 2.14e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  298 LQKARGELqqqlEVLEQEAWRLRRMNMELQLQGDSAQGEKLEQQEELHLAVRERERLQETLVG----LEAKQSESLSELL 373
Cdd:TIGR02169  172 KEKALEEL----EEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKekeaLERQKEAIERQLA 247

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  374 TLREALESSRLEGELLKQERVEVAAALARAEQSIVELSGSEN--------SLKAEVADLRAAAVKLGALNEALALDKVEL 445
Cdd:TIGR02169  248 SLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQlrvkekigELEAEIASLERSIAEKERELEDAEERLAKL 327

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  446 NQQLLQLEQENQSLCSRVEAAEQLRSALQVDLAEAERRREALWEKKTQLETQLQKAEEAGAELQAELRGTREEKEELKDK 525
Cdd:TIGR02169  328 EAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRE 407

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  526 LSEAHHQQETATAHLEQLHQDAERQEETLARAVQEKEALVRERAALEVRLQAVERDRQDLTEHVLGLRSAKEQLESNLFE 605
Cdd:TIGR02169  408 LDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSK 487

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  606 AQQQNSVIQVTKGQLEVQIQTIIQAKEVIQGEVKCLkLELDAERTRAEQEW-------------------DAVAR---QL 663
Cdd:TIGR02169  488 LQRELAEAEAQARASEERVRGGRAVEEVLKASIQGV-HGTVAQLGSVGERYataievaagnrlnnvvvedDAVAKeaiEL 566

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  664 AQAEQEGQAS---LERQKVAHEE--------------EVNRLQEKWEKERSWLQQ--------ELDKTL----------- 707
Cdd:TIGR02169  567 LKRRKAGRATflpLNKMRDERRDlsilsedgvigfavDLVEFDPKYEPAFKYVFGdtlvvediEAARRLmgkyrmvtleg 646

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  708 ETLERERAELETKLREQQTEMEAIRAQREEERSQADSALYQMQLETEKERVSLLETLL-RTQKELADASQQLERLRQDMK 786
Cdd:TIGR02169  647 ELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLdELSQELSDASRKIGEIEKEIE 726

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  787 iQKLKEQETTGMLQAQLQETQQELKEAAQQHRDDLAAFQKDKLDLQKQVEDLMSQLvaHDDSQRLVKEEIEEKVKVAQec 866
Cdd:TIGR02169  727 -QLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEAL--NDLEARLSHSRIPEIQAELS-- 801

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  867 sriqkELEKENASLALSLVEKEKRLlilqeadSVRQQELSSLRQDIQEAQEGQRELgvqvELLRQEVKEKEADFVAREAQ 946
Cdd:TIGR02169  802 -----KLEEEVSRIEARLREIEQKL-------NRLTLEKEYLEKEIQELQEQRIDL----KEQIKSIEKEIENLNGKKEE 865

                          730       740       750       760       770       780
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720397337  947 LLEELEASRVAEQQLRASLWAQEAKATQLQLQLRSTESQLEALVAEQQPENQAQAQLASLCSVLQQAL 1014
Cdd:TIGR02169  866 LEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEEL 933
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
1084-1652 2.52e-11

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 69.30  E-value: 2.52e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1084 RDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDLHETAASLQSRLRqaelqkmEAQND 1163
Cdd:PRK02224   229 REQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERD-------DLLAE 301

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1164 RELLQASKEKLSAQVEHLQAcvaeaqaqadAAAVLEEDLRTARSALKLKNEELESERERAQALQEQGelkvaqgKALQEN 1243
Cdd:PRK02224   302 AGLDDADAEAVEARREELED----------RDEELRDRLEECRVAAQAHNEEAESLREDADDLEERA-------EELREE 364

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1244 LALLAQTLSNREREVETLQAEVQELEKQREMQKAALELLSLDLKKRSREVDLQqeqiqeleqcRSVLEHLPMAVQEREQK 1323
Cdd:PRK02224   365 AAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEEL----------REERDELREREAELEAT 434

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1324 LSVQRDQIRELENDREAQRSVLEHQLLDLEQKAQVIESQRGQIQDLKKQLGTLECLALELEESHHKVESQQKMITELEGQ 1403
Cdd:PRK02224   435 LRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERL 514

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1404 REmQRVALTHLtldLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQkqqeQLAQALERKGQELvl 1483
Cdd:PRK02224   515 EE-RREDLEEL---IAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAR----EEVAELNSKLAEL-- 584

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1484 qKERIQVLEDQRTLQTKIleEDLEQIKHSLRERSQELASQWQLVHERADDGKSpskgqrgslehlklilRDKEKEVECQQ 1563
Cdd:PRK02224   585 -KERIESLERIRTLLAAI--ADAEDEIERLREKREALAELNDERRERLAEKRE----------------RKRELEAEFDE 645

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1564 ERIQELQGHMGQLEQQLQGLHRKvgetsllLTHREQETATLQQHLQEAKEQGELREqvlqgQLEEAQRDLAQRDHELETL 1643
Cdd:PRK02224   646 ARIEEAREDKERAEEYLEQVEEK-------LDELREERDDLQAEIGAVENELEELE-----ELRERREALENRVEALEAL 713


                   ....*....
gi 1720397337 1644 RQEKQQTQD 1652
Cdd:PRK02224   714 YDEAEELES 722
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
336-858 3.45e-11

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 68.91  E-value: 3.45e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  336 EKLEQQEELHLAVRERER--LQETLVGLEAKQSESLSELLTL----------REALESSRLEGELLKQERVEVAAALARA 403
Cdd:PRK02224   184 DQRGSLDQLKAQIEEKEEkdLHERLNGLESELAELDEEIERYeeqreqaretRDEADEVLEEHEERREELETLEAEIEDL 263

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  404 EQSIVELSGSENSLKAEVADLRAAAVKLGALNEALALDKVELNQQLLQLEQENQSLCSRVEAAEQLRSALQVDLAEAERR 483
Cdd:PRK02224   264 RETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEE 343

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  484 REALWEKKTQLETQLQKAEEAGAELQAELRGTREEKEELKDKLSEAHHQQETATAHLEQLHQDAERQEETLARAVQEKEA 563
Cdd:PRK02224   344 AESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDE 423

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  564 LVRERAALEVRLQAVERDRQDLTEhvlglrsakeqlesnLFEAQQQNSVIQVTKGQLEVqiQTIIQAKEVIQgevkclkl 643
Cdd:PRK02224   424 LREREAELEATLRTARERVEEAEA---------------LLEAGKCPECGQPVEGSPHV--ETIEEDRERVE-------- 478

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  644 ELDAERTRAEQEWDAVARQLAQAEQegQASLERQKVAHEEEVNRLQEKWEKERSWLQQELDKtLETLERERAELETKLRE 723
Cdd:PRK02224   479 ELEAELEDLEEEVEEVEERLERAED--LVEAEDRIERLEERREDLEELIAERRETIEEKRER-AEELRERAAELEAEAEE 555

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  724 QQTEMEAIRAQREEERSQADSalYQMQLETEKERVSLLETLLRTQKELADASQQLERLRQDMKIQKLKEQETTGMLQAqL 803
Cdd:PRK02224   556 KREAAAEAEEEAEEAREEVAE--LNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAE-K 632

                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  804 QETQQELKEAAQQHRDDLAAFQKDKL-DLQKQVEDLMSQLVAHDDSQR----LVKEEIEE 858
Cdd:PRK02224   633 RERKRELEAEFDEARIEEAREDKERAeEYLEQVEEKLDELREERDDLQaeigAVENELEE 692
PTZ00121 PTZ00121
MAEBL; Provisional
 313-937 3.91e-11

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 69.01  E-value: 3.91e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  313 EQEAWRLRRMNMELQLQGDSAQGEKLEQQEELHLAVRERERLQETLVGLEAKQSESLSELLTLREALESSRLEGELLKQE 392
Cdd:PTZ00121  1239 AEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAD 1318

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  393 RVEVAAALARAEQSIVELSGSENSLKAEVA--DLRAAAVKLGALNEALALDKVELNQQLLQLEQENQSlCSRVEAAEQLR 470
Cdd:PTZ00121  1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAkaEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKK-AEEKKKADEAK 1397

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  471 SALQVDLAEAERRREALWEKKTQLETQLQKAEEAGAElqaELRGTREEK---EELKDKLSEAHHQQEtatahLEQLHQDA 547
Cdd:PTZ00121  1398 KKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKAD---EAKKKAEEAkkaDEAKKKAEEAKKAEE-----AKKKAEEA 1469

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  548 ERQEETLARAVQEKEALVRERAALEVRLQAVE-RDRQDLTEHVLGLRSAKEQLESN-LFEAQQQNSVIQVTKGQLEVQIQ 625
Cdd:PTZ00121  1470 KKADEAKKKAEEAKKADEAKKKAEEAKKKADEaKKAAEAKKKADEAKKAEEAKKADeAKKAEEAKKADEAKKAEEKKKAD 1549

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  626 TIIQAKEVIQGEVKcLKLEldaERTRAEQEWDAVARQLAQAEQEGQASLERQKVAHEEEVNRLQEKWEK-ERSWLQQELD 704
Cdd:PTZ00121  1550 ELKKAEELKKAEEK-KKAE---EAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKaEEAKIKAEEL 1625

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  705 KTLETLERERAELETKLREQQTEMEAIRaqREEERSQADSALYQMQLETEKERVsllETLLRTQKELADASQQLERLRQD 784
Cdd:PTZ00121  1626 KKAEEEKKKVEQLKKKEAEEKKKAEELK--KAEEENKIKAAEEAKKAEEDKKKA---EEAKKAEEDEKKAAEALKKEAEE 1700

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  785 M-KIQKLKEQEttgmlqAQLQETQQELKEAAQQHRDDLAAFQKDKLDLQKQVEDLmsqlvahddsqrlvKEEIEEKVKVA 863
Cdd:PTZ00121  1701 AkKAEELKKKE------AEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEA--------------KKDEEEKKKIA 1760

                          570       580       590       600       610       620       630
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720397337  864 QECSRIQKELEKenaslalslVEKEKRLLI---LQEADSVRQQELSSLRQDIQEAQEGQRELGVQVELLRQEVKEKE 937
Cdd:PTZ00121  1761 HLKKEEEKKAEE---------IRKEKEAVIeeeLDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEME 1828
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 644-1492 1.72e-10

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 66.63  E-value: 1.72e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  644 ELDAERTRAEQEWDAVARQLAQAEQ-EGQASLERQKVAHE-EEVNRLQEKWEKERSWLQQELDKTLETLERERAELETKL 721
Cdd:TIGR02169  167 EFDRKKEKALEELEEVEENIERLDLiIDEKRQQLERLRRErEKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQL 246

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  722 REQQTEMEAIRAQREEERSQADSALYQMQLETEKERVSLLETLLRTQKELADASQQLERLRqdmKIQKLKEQEttgmlQA 801
Cdd:TIGR02169  247 ASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLE---RSIAEKERE-----LE 318

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  802 QLQETQQELKEAAQQHRDDLAAFQKDKLDLQKQVEDLMSQLVAHDDSQRLVKEEIEEKVKVAQECSRIQKELEKENASLA 881
Cdd:TIGR02169  319 DAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLK 398

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  882 LSLVEKEKRLLILQEADSVRQQELSSLRQDIQEAQEGQRELGVQVELLRQEVKEKEadfvareaQLLEELEASRVAEQQl 961
Cdd:TIGR02169  399 REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQE--------WKLEQLAADLSKYEQ- 469

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  962 raSLWAQEAKATQLQLQLRSTESQLEALVAEQQPENQAQAQLASLCSVLQQA----------LGSACESRP---ELRGGG 1028
Cdd:TIGR02169  470 --ELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASiqgvhgtvaqLGSVGERYAtaiEVAAGN 547

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1029 DSAPTLWGPDPDQNGASRLFKRWSLPtalspEAVALALQKLHQdvwKARQARDDLRDQVQKLVQRLTDTEAQ-KSQVHSE 1107
Cdd:TIGR02169  548 RLNNVVVEDDAVAKEAIELLKRRKAG-----RATFLPLNKMRD---ERRDLSILSEDGVIGFAVDLVEFDPKyEPAFKYV 619

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1108 LQDlqRQLSQSQEEKSKWEG--RQNSLESELRDLHETAASLQSRLRQAELQKMEAQNDRELLQASKEKLSAQVEHLQACV 1185
Cdd:TIGR02169  620 FGD--TLVVEDIEAARRLMGkyRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSEL 697

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1186 AEaqaqadaaavLEEDLRTARSALKLKNEELESERERAQALQEQGELKVAQGKALQENLALLAQTLSNREREVETLQAEV 1265
Cdd:TIGR02169  698 RR----------IENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARI 767

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1266 QELEKQREMQKAALELL--SLDLKKRSREVDLQQEQIQELEQCRSVLEHLPMAVQEREQKLSVQRDQIRELENDR---EA 1340
Cdd:TIGR02169  768 EELEEDLHKLEEALNDLeaRLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRidlKE 847

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1341 QRSVLEHQL----LDLEQKAQVIESQRGQIQDLKKQLGTLECLALELEEshhKVESQQKMITELEGQREMQRVALTHLTL 1416
Cdd:TIGR02169  848 QIKSIEKEIenlnGKKEELEEELEELEAALRDLESRLGDLKKERDELEA---QLRELERKIEELEAQIEKKRKRLSELKA 924

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1417 DLEERSQELQAQSSQLHELENHSTHLAKE--LQERDQEVTSQRQQIDE-----LQKQQEQLAQALERKGQELVLQKERIQ 1489
Cdd:TIGR02169  925 KLEALEEELSEIEDPKGEDEEIPEEELSLedVQAELQRVEEEIRALEPvnmlaIQEYEEVLKRLDELKEKRAKLEEERKA 1004


                   ...
gi 1720397337 1490 VLE 1492
Cdd:TIGR02169 1005 ILE 1007
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 1592-2035 3.55e-10

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 65.74  E-value: 3.55e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1592 LLLTHREQETATLQQHLQEAKEQGELREQVlqGQLEEAQRDLAQ-----RDHEleTLRQEKQQTQDQEESMKLKTSALQA 1666
Cdd:COG3096    286 RALELRRELFGARRQLAEEQYRLVEMAREL--EELSARESDLEQdyqaaSDHL--NLVQTALRQQEKIERYQEDLEELTE 361

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1667 ALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLGDLRAEsrehekavlALQQRCAEQAQEheaeartlq 1746
Cdd:COG3096    362 RLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTR---------AIQYQQAVQALE--------- 423

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1747 dswlQAQATLTEQEQELAALRAENQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATl 1826
Cdd:COG3096    424 ----KARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKIAGEVERSQAWQTAR- 498

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1827 dtcqasarqleEALRiREGEIQAQALQHHEVTQHLQqelcqkkeELRQLLEKAGARRSQENGIQEKQSLEQERQEETRRL 1906
Cdd:COG3096    499 -----------ELLR-RYRSQQALAQRLQQLRAQLA--------ELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEEL 558

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1907 LESLKelqltvAQREEEILMLREASSPRHRAlpaekpalqplpaQQELERLQTALRQTEAREIEWREKAQDLALSLAQSK 1986
Cdd:COG3096    559 LAELE------AQLEELEEQAAEAVEQRSEL-------------RQQLEQLRARIKELAARAPAWLAAQDALERLREQSG 619

                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1720397337 1987 ASISSLQEITMFLQaSVLERESEQQRLQEELVLSRQALEEQ-----QSGGPHST 2035
Cdd:COG3096    620 EALADSQEVTAAMQ-QLLEREREATVERDELAARKQALESQierlsQPGGAEDP 672
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 1090-1872 4.06e-10

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 65.47  E-value: 4.06e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1090 LVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDLHEtaaslqsrlrqaelqKMEAQNDRELLQA 1169
Cdd:TIGR02169  228 LLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNK---------------KIKDLGEEEQLRV 292

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1170 SKE--KLSAQVEHLQACVAEAQAQADAAAVLEEDLRTARSALKLKNEELESERERAQALQEQgelkvaqgkalqenlalL 1247
Cdd:TIGR02169  293 KEKigELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDK-----------------L 355

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1248 AQTLSNREREVETLQAEVQELEKQREMQKAALELLSLDLKKRSREVDLQQEQIQELEQcrsVLEHLPMAVQEREQKLSVQ 1327
Cdd:TIGR02169  356 TEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQE---ELQRLSEELADLNAAIAGI 432

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1328 RDQIRELENDREAQRSVLEHQLLDLEQKAQVIESQRGQIQDLKKQLGTLECLALELEESHHKVESQQKMITELEGQREMQ 1407
Cdd:TIGR02169  433 EAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAV 512

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1408 RvalthltLDLEERSQELQAQSSQLHEL-ENHSTHLAKELQERDQEVTSQRqqiDELQKQQEQLAQAlERKGQELVLQKE 1486
Cdd:TIGR02169  513 E-------EVLKASIQGVHGTVAQLGSVgERYATAIEVAAGNRLNNVVVED---DAVAKEAIELLKR-RKAGRATFLPLN 581

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1487 RIQvleDQRTLQTKILEEDLEQIKHSLRERSQELAS------QWQLVHERADDGKSPSKGQR-----------------G 1543
Cdd:TIGR02169  582 KMR---DERRDLSILSEDGVIGFAVDLVEFDPKYEPafkyvfGDTLVVEDIEAARRLMGKYRmvtlegelfeksgamtgG 658

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1544 SLEHLKLILRDKEKEVECQQ--ERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQgelrEQV 1621
Cdd:TIGR02169  659 SRAPRGGILFSRSEPAELQRlrERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQE----EEK 734

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1622 LQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQ-----AHATLKERQGELEEHREQVRRLQEEL 1696
Cdd:TIGR02169  735 LKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDlearlSHSRIPEIQAELSKLEEEVSRIEARL 814

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1697 EVEGRQVRALEEVLGDLRAESREHEKAVLALQQRCAEQAQEHE---AEARTLQDSWLQAQATLTEQEQELAAL-----RA 1768
Cdd:TIGR02169  815 REIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEnlnGKKEELEEELEELEAALRDLESRLGDLkkerdEL 894

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1769 ENQYS--RRQEEAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALqATLDTCQASARQLEEALRiREGE 1846
Cdd:TIGR02169  895 EAQLRelERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEE-LSLEDVQAELQRVEEEIR-ALEP 972

                          810       820
                   ....*....|....*....|....*.
gi 1720397337 1847 IQAQALQHHEVTQHLQQELCQKKEEL 1872
Cdd:TIGR02169  973 VNMLAIQEYEEVLKRLDELKEKRAKL 998
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
342-940 2.61e-09

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 63.01  E-value: 2.61e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  342 EELHLAVRERERLQETLVGLEA------KQSESLSELLTLREALES--SRLEGELLKQERVEVAAALARAEQSIVELSGS 413
Cdd:COG4913    238 ERAHEALEDAREQIELLEPIRElaeryaAARERLAELEYLRAALRLwfAQRRLELLEAELEELRAELARLEAELERLEAR 317

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  414 ENSLKAEVADLRAAAVKLGAlnealaldkvelnqqllqleqenqslcSRVEAAEQLRSALQVDLAEAERRREALWEKKTQ 493
Cdd:COG4913    318 LDALREELDELEAQIRGNGG---------------------------DRLEQLEREIERLERELEERERRRARLEALLAA 370

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  494 LETQLQKAEEAGAELQAELRGTREEKEELKDKLSEAHHQQETAtahleqlHQDAERQEETLAravQEKEALVRERAALEV 573
Cdd:COG4913    371 LGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAA-------LRDLRRELRELE---AEIASLERRKSNIPA 440

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  574 RLQAVerdRQDLTEHvLGLRSAK-----EQLESNLFEAQQQNSVIQVTKGQ---LEVQIQTIIQAKEVIQGEVKCLKLEL 645
Cdd:COG4913    441 RLLAL---RDALAEA-LGLDEAElpfvgELIEVRPEEERWRGAIERVLGGFaltLLVPPEHYAAALRWVNRLHLRGRLVY 516

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  646 DAERTRAEQEW------DAVARQLAQAEQEGQASLERQ--------KVAHEEEVNRLQ--------------------EK 691
Cdd:COG4913    517 ERVRTGLPDPErprldpDSLAGKLDFKPHPFRAWLEAElgrrfdyvCVDSPEELRRHPraitragqvkgngtrhekddRR 596

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  692 WEKERSWLQQELDKTLETLERERAELETKLREQQTEMEAIRAQREEERSQADsaLYQMQLETEKERVSLLEtllrTQKEL 771
Cdd:COG4913    597 RIRSRYVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERRE--ALQRLAEYSWDEIDVAS----AEREI 670

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  772 ADASQQLERLRQDM-KIQKLKEQETTgmLQAQLQETQQELKEAaqqhRDDLAAFQKDKLDLQKQVEDLMSQLVAHDDSQR 850
Cdd:COG4913    671 AELEAELERLDASSdDLAALEEQLEE--LEAELEELEEELDEL----KGEIGRLEKELEQAEEELDELQDRLEAAEDLAR 744

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  851 L-VKEEIEEKVKVAQEC---SRIQKELEKENASLALSLVEKEKRLL-ILQEADSVRQQELSSLRQDIQEAQEGQRELGvq 925
Cdd:COG4913    745 LeLRALLEERFAAALGDaveRELRENLEERIDALRARLNRAEEELErAMRAFNREWPAETADLDADLESLPEYLALLD-- 822

                          650
                   ....*....|....*
gi 1720397337  926 vELLRQEVKEKEADF 940
Cdd:COG4913    823 -RLEEDGLPEYEERF 836
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
524-999 4.67e-09

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 61.85  E-value: 4.67e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  524 DKLSEAHHQQETATAHLEQLhQDAERQEETLARAVQEKEALVRERAALevRLQAVERDRQDLTEHVLGLRSAKEQLESNL 603
Cdd:COG4913    235 DDLERAHEALEDAREQIELL-EPIRELAERYAAARERLAELEYLRAAL--RLWFAQRRLELLEAELEELRAELARLEAEL 311

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  604 FEAQQQNSVIQVTKGQLEVQIQTI-IQAKEVIQGEVKCLKLELDaERTRAEQEWDAVARQLAQAEQEGQASLERQKvahe 682
Cdd:COG4913    312 ERLEARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELE-ERERRRARLEALLAALGLPLPASAEEFAALR---- 386

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  683 EEVNRLQEKWEKERSWLQQELDKT---LETLERERAELETKLREQQT-------EMEAIRAQREEERSQADSALY----- 747
Cdd:COG4913    387 AEAAALLEALEEELEALEEALAEAeaaLRDLRRELRELEAEIASLERrksnipaRLLALRDALAEALGLDEAELPfvgel 466

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  748 -QMQLETEK-----ERV------SLL------------------ETLLRTQK-ELADASQQLERLRQDMKIQKL--KEQE 794
Cdd:COG4913    467 iEVRPEEERwrgaiERVlggfalTLLvppehyaaalrwvnrlhlRGRLVYERvRTGLPDPERPRLDPDSLAGKLdfKPHP 546

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  795 TTGMLQAQLQ--------ETQQELKEAAQ------QHRDDLAAFQKD-----------------KLD-LQKQVEDLMSQL 842
Cdd:COG4913    547 FRAWLEAELGrrfdyvcvDSPEELRRHPRaitragQVKGNGTRHEKDdrrrirsryvlgfdnraKLAaLEAELAELEEEL 626

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  843 VAHDDSQRLVKEEIEEKVKVAQECSRIQK--ELEKENASLALSLVEKEKRLLILQEADSV---RQQELSSLRQDIQEAQE 917
Cdd:COG4913    627 AEAEERLEALEAELDALQERREALQRLAEysWDEIDVASAEREIAELEAELERLDASSDDlaaLEEQLEELEAELEELEE 706

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  918 GQRELGVQVELLRQEVKEKEADFVAREAQLLEELEASRVAEQQLRASLWAQEAKATQLQLQLRSTESQLEALVAEQQPEN 997
Cdd:COG4913    707 ELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAE 786


                   ..
gi 1720397337  998 QA 999
Cdd:COG4913    787 EE 788
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 242-880 7.28e-09

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 61.24  E-value: 7.28e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  242 LREKLQKLTGERDAL----AGQTVGLQGEVDSLTGERDALAGQTVDLQGEVDSLSRERELLQKARGELQQQLE----VLE 313
Cdd:TIGR02169  196 KRQQLERLRREREKAeryqALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEeieqLLE 275

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  314 QEAWRLRRMNMELQLQGDSAQGEKLEQQEELHLAV----RERERLQETLVGLEAKQSESLSELLTLREALESSRLEGELL 389
Cdd:TIGR02169  276 ELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIaekeRELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKL 355

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  390 KQERVEVAAALARAEQSIVELSGSENSLKAEVADLRaaaVKLGALNEALAldkvELNQQLLQLEQENQSLCSRVEAAEQL 469
Cdd:TIGR02169  356 TEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR---EKLEKLKREIN----ELKRELDRLQEELQRLSEELADLNAA 428

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  470 RSALQVDLAEAERRREALWEKKTQLETQLQKAEEAGAELQAELRGTREEKEELKDKLSEAHHQQETATAHLEQLHQ---D 546
Cdd:TIGR02169  429 IAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEErvrG 508

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  547 AERQEETLARAVQEKEALVRE--------RAALEV----RLQAV--------ERDRQDLTEHVLG---------LRSAKE 597
Cdd:TIGR02169  509 GRAVEEVLKASIQGVHGTVAQlgsvgeryATAIEVaagnRLNNVvveddavaKEAIELLKRRKAGratflplnkMRDERR 588

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  598 QLESNL-------------FEAQQQNSVIQV------------------------------------TKGQLEVQIQTII 628
Cdd:TIGR02169  589 DLSILSedgvigfavdlveFDPKYEPAFKYVfgdtlvvedieaarrlmgkyrmvtlegelfeksgamTGGSRAPRGGILF 668

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  629 QAKE-----VIQGEVKCLKLELD---AERTRAEQEWDAvARQLAQAEQEGQASLERQKVAHEEEVNRLQEKWEKERSWLQ 700
Cdd:TIGR02169  669 SRSEpaelqRLRERLEGLKRELSslqSELRRIENRLDE-LSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLS 747

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  701 qELDKTLETLERERAELETKLREQQTEMEAIRAQREE-ERSQADSALYQMQLET---EKERVSLLETLLRTQKELA---- 772
Cdd:TIGR02169  748 -SLEQEIENVKSELKELEARIEELEEDLHKLEEALNDlEARLSHSRIPEIQAELsklEEEVSRIEARLREIEQKLNrltl 826

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  773 ------DASQQLERLRQDMKIQKLKEQETTGMLQAQLQETQQELKEAAQQHRDdlaaFQKDKLDLQKQVEDLMSQLVAHD 846
Cdd:TIGR02169  827 ekeyleKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRD----LESRLGDLKKERDELEAQLRELE 902

                          730       740       750
                   ....*....|....*....|....*....|....
gi 1720397337  847 DSQRLVKEEIEEKVKVAQECSRIQKELEKENASL 880
Cdd:TIGR02169  903 RKIEELEAQIEKKRKRLSELKAKLEALEEELSEI 936
PTZ00121 PTZ00121
MAEBL; Provisional
 478-1203 8.27e-09

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 61.31  E-value: 8.27e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  478 AEAERRREALWEKKTQLETQLQKAEEAGAELQAELRGTREEKEELKDKLSEAHHQQETATAHLEQLHQDAERQEEtlARA 557
Cdd:PTZ00121  1094 EEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEE--ARK 1171

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  558 VQEKEALVRERAALEVRLQAVERDRQDltehvlgLRSAKEQLesnlfEAQQQNSVIQVTKGQLEVQIQTIIQAKEVIQGE 637
Cdd:PTZ00121  1172 AEDAKKAEAARKAEEVRKAEELRKAED-------ARKAEAAR-----KAEEERKAEEARKAEDAKKAEAVKKAEEAKKDA 1239

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  638 VKCLKLEldAERTRAEQEWDAVARQLAQAEQEGQASLERQKVAHE----EEVNRLQEKWEKERSWLQQELDKTLETlERE 713
Cdd:PTZ00121  1240 EEAKKAE--EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADElkkaEEKKKADEAKKAEEKKKADEAKKKAEE-AKK 1316

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  714 RAELETKLREQQTEMEAIRAQREEERSQADSALYQMQLETEKERVSlletllRTQKELADASQQLERLRQDMKIQKLKEQ 793
Cdd:PTZ00121  1317 ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAA------EEKAEAAEKKKEEAKKKADAAKKKAEEK 1390

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  794 ETTGMLQAQLQETQQELKEAAQQhrddlAAFQKDKLDLQKQVEDLMSqlvahddsqrlvKEEIEEKVKVAQECSRIQKEL 873
Cdd:PTZ00121  1391 KKADEAKKKAEEDKKKADELKKA-----AAAKKKADEAKKKAEEKKK------------ADEAKKKAEEAKKADEAKKKA 1453

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  874 EKENASLALSLVEKEKRllilqEADSVRQQELSSLRQDiqEAQEGQRELGVQVELLRQEVKEKEADFVAREAQLLEELEA 953
Cdd:PTZ00121  1454 EEAKKAEEAKKKAEEAK-----KADEAKKKAEEAKKAD--EAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADE 1526

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  954 SRVAEQQLRASlWAQEAKATQLQLQLRSTESQLEALVAEQQPENQAQAQLASLCSVLQQALGSACESRPELRGGGDSAPT 1033
Cdd:PTZ00121  1527 AKKAEEAKKAD-EAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEK 1605

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1034 LWGPDPDQNGASRLFKRWSLPTALS-PEAVALALQKLHQDVWKARQARDDLRDQVQKLVQRLTDTEAQKSQV------HS 1106
Cdd:PTZ00121  1606 KMKAEEAKKAEEAKIKAEELKKAEEeKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAeeakkaEE 1685

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1107 ELQDLQRQLSQSQEEKSKWEGRQNSLESELRDLHETAASLQSRLRQAELQKMEAQNDR----ELLQASKEKLSAQVEHLQ 1182
Cdd:PTZ00121  1686 DEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKkkaeEAKKDEEEKKKIAHLKKE 1765

                          730       740
                   ....*....|....*....|.
gi 1720397337 1183 ACVAEAQAQADAAAVLEEDLR 1203
Cdd:PTZ00121  1766 EEKKAEEIRKEKEAVIEEELD 1786
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1681-1875 1.08e-08

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 60.70  E-value: 1.08e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1681 ELEEHREQVRRLQEELEVEGRQVRALEEVLGD------LRAESREHEKAVLALQQRCAEQAQEH-EAEARTLQDSWLQAQ 1753
Cdd:COG4913    229 ALVEHFDDLERAHEALEDAREQIELLEPIRELaeryaaARERLAELEYLRAALRLWFAQRRLELlEAELEELRAELARLE 308

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1754 ATLTEQEQELAALRAE-NQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQAS 1832
Cdd:COG4913    309 AELERLEARLDALREElDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAE 388

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|...
gi 1720397337 1833 ARQLEEALRIREGEIQAQALQHHEVTQHLQQELCQKKEELRQL 1875
Cdd:COG4913    389 AAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASL 431
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1625-1851 1.84e-08

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 59.01  E-value: 1.84e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1625 QLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQVR 1704
Cdd:COG4942     21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1705 ALEEVLGDLRAE---SREHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQYSRRQEEAAV 1781
Cdd:COG4942    101 AQKEELAELLRAlyrLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALL 180

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1782 SQAEALQEALSKAQAalqekeqsllEQAELSHTLEASTAALQATLDTCQASARQLEEALRIREGEIQAQA 1851
Cdd:COG4942    181 AELEEERAALEALKA----------ERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 1625-1929 2.13e-08

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 59.69  E-value: 2.13e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1625 QLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKlKTSALQAALEQAHATL-----KERQGELEEHREQVRRLQEELEVE 1699
Cdd:TIGR02168  180 KLERTRENLDRLEDILNELERQLKSLERQAEKAE-RYKELKAELRELELALlvlrlEELREELEELQEELKEAEEELEEL 258

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1700 GRQVRALEEVLGDLRAESREHEKAVLALQQRcaeqAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQYSRRQEEA 1779
Cdd:TIGR02168  259 TAELQELEEKLEELRLEVSELEEEIEELQKE----LYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDE 334

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1780 AVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLEEALRIREGEIQAQALQHHEVTQ 1859
Cdd:TIGR02168  335 LAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLED 414

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1860 HLQQELCQKKEELRQLLEKAGARRSQEngIQEKQSLEQERQEETRRLLESLKELQLTVAQREEEILMLRE 1929
Cdd:TIGR02168  415 RRERLQQEIEELLKKLEEAELKELQAE--LEELEEELEELQEELERLEEALEELREELEEAEQALDAAER 482
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 4-585 3.10e-08

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 59.18  E-value: 3.10e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337    4 ATDRDLTELKAEHARLSGSLLTCCLRLTLRAQSRESSGSGRTE-ESEPARLLLLVAKTQALEKEAHEKSQELMQLKSHGD 82
Cdd:COG1196    250 ELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYElLAELARLEQDIARLEERRRELEERLEELEEELAELE 329

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337   83 LEKAELQDRVTELSALLTQSQKQNEDYEKMVKALRETMEILETNHAELMEHEASLSRNAQEEKLSLQQVIKAITQAlasv 162
Cdd:COG1196    330 EELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL---- 405

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  163 eeedtvtqssghedslqsdcnglsqfdpqdpdraltlvqsvltrrQQAVQDLRQQLSGCQEAMSFLQQQHDQWEEEGRAL 242
Cdd:COG1196    406 ---------------------------------------------EEAEEALLERLERLEEELEELEEALAELEEEEEEE 440

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  243 REKLQKLTGERDALAGQTVGLQGEVDSLTGERDALAGQTVDLQGEVDSLSRERELLQKARGELQQQLEVLEQEAWRLRRM 322
Cdd:COG1196    441 EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLR 520

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  323 NMELQLQGDSAQGEKLEQQEELHLAVRERERLQETLVGLEAKQSESLSELLTLREALESSRLEGELLKQERVEVAAALAR 402
Cdd:COG1196    521 GLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAA 600

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  403 AEQSIVELSGSENSLKAEVADLRAAAVKLGALNEALALDKVELNQQLLQLEQENQSLcSRVEAAEQLRSALQVDLAEAER 482
Cdd:COG1196    601 VDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGS-AGGSLTGGSRRELLAALLEAEA 679

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  483 RREALWEKKTQLETQLQKAEEAGAELQAELRGTREEKEELKDKLSEAHHQQETAtahLEQLHQDAERQEETLARAVQEKE 562
Cdd:COG1196    680 ELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAE---REELLEELLEEEELLEEEALEEL 756

                          570       580
                   ....*....|....*....|...
gi 1720397337  563 ALVRERAALEVRLQAVERDRQDL 585
Cdd:COG1196    757 PEPPDLEELERELERLEREIEAL 779
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
209-918 4.60e-08

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 58.77  E-value: 4.60e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  209 QAVQDLRQQLSGCQEAMSFLQQQHDQWEEEgRALREKLQKLTGERDALAGQTVGLQGEVDSLtgERDALAGQTVDLQGEV 288
Cdd:COG4913    228 DALVEHFDDLERAHEALEDAREQIELLEPI-RELAERYAAARERLAELEYLRAALRLWFAQR--RLELLEAELEELRAEL 304

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  289 DSLSRERELLQKARGELQQQLEVLEQEAWrlrrmnmelQLQGD---SAQGEKLEQQEELHLAVRERERLQETLVGLEAKQ 365
Cdd:COG4913    305 ARLEAELERLEARLDALREELDELEAQIR---------GNGGDrleQLEREIERLERELEERERRRARLEALLAALGLPL 375

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  366 SESLSELLTLREALESSRlegELLKQERVEVAAALARAEQSIVELSGSENSLKAEVADLRAAAVKL--------GALNEA 437
Cdd:COG4913    376 PASAEEFAALRAEAAALL---EALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIparllalrDALAEA 452

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  438 LALDKVELNQqllqleqenqsLCSRVE----------AAEQL----RSALQVDLAEAERRREALWEKKTQLETQLQKAEE 503
Cdd:COG4913    453 LGLDEAELPF-----------VGELIEvrpeeerwrgAIERVlggfALTLLVPPEHYAAALRWVNRLHLRGRLVYERVRT 521

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  504 AGAELQAElrgtREEKEELKDKLS-EAHHQQETATAHLEQLHQ----DAERQEETLARAVQeKEALVRERAalevRLQAV 578
Cdd:COG4913    522 GLPDPERP----RLDPDSLAGKLDfKPHPFRAWLEAELGRRFDyvcvDSPEELRRHPRAIT-RAGQVKGNG----TRHEK 592

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  579 ERDRQDLTEHVLGL--RSAKEQLESNLFEAQQQNSVIQVTKGQLEVQIQTIIQAKEVIQGEvkclkleldAERTRAEQEW 656
Cdd:COG4913    593 DDRRRIRSRYVLGFdnRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRL---------AEYSWDEIDV 663

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  657 DAVARQLAQAEQEgQASLErqkvAHEEEVNRLQEKWEkerswlqqELDKTLETLERERAELETKLREQQTEMEAIRAQRE 736
Cdd:COG4913    664 ASAEREIAELEAE-LERLD----ASSDDLAALEEQLE--------ELEAELEELEEELDELKGEIGRLEKELEQAEEELD 730

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  737 EERSQADSAlyqmQLETEKERVSLLETLLRTQKELADASQQLERLRQDMKIQKLKEQETTGMLQAQLQETQQELKEAAQQ 816
Cdd:COG4913    731 ELQDRLEAA----EDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETAD 806

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  817 HRDDLAAFQkDKLDLQKQVEDlmSQLVAH-DDSQRLVKEEIEEKV-----KVAQECSRIQKELEKENASLALSLVEKEKR 890
Cdd:COG4913    807 LDADLESLP-EYLALLDRLEE--DGLPEYeERFKELLNENSIEFVadllsKLRRAIREIKERIDPLNDSLKRIPFGPGRY 883

                          730       740
                   ....*....|....*....|....*...
gi 1720397337  891 LLIlqEADSVRQQELSSLRQDIQEAQEG 918
Cdd:COG4913    884 LRL--EARPRPDPEVREFRQELRAVTSG 909
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 1066-1799 4.70e-08

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 58.54  E-value: 4.70e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1066 LQKLHQDVWKARQARDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDLhetaas 1145
Cdd:TIGR02169  296 IGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDL------ 369

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1146 lqsrlrQAELQKMEAQNdrellQASKEKLSAQVEHLQACVAEAQAQADAAAVLEEDLRTARSALKLKNEELESERERAQA 1225
Cdd:TIGR02169  370 ------RAELEEVDKEF-----AETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINE 438

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1226 LQEQGELKVAQGKALQENLALLAQTLSNREREVETLQAEVQELEKqrEMQKAALELLSLDLKKR---SREVDLQQEQIQE 1302
Cdd:TIGR02169  439 LEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEK--ELSKLQRELAEAEAQARaseERVRGGRAVEEVL 516

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1303 LEQCRSVLEHLPMAVQEREQKLSV------QRDQIRELENDREAQRSVlehQLLDLEQKAQVIESQRGQIQDLKKQLGtL 1376
Cdd:TIGR02169  517 KASIQGVHGTVAQLGSVGERYATAievaagNRLNNVVVEDDAVAKEAI---ELLKRRKAGRATFLPLNKMRDERRDLS-I 592

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1377 ECLALELEESHHKVESQQK-------------MITELE-GQREMQRVALTHLTLDLEERSQELQAQSSQLHELENHST-- 1440
Cdd:TIGR02169  593 LSEDGVIGFAVDLVEFDPKyepafkyvfgdtlVVEDIEaARRLMGKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRse 672

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1441 -----HLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERKGQELV-LQKERIQVLEDQRTLQtkileEDLEQIKHSLR 1514
Cdd:TIGR02169  673 paelqRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGeIEKEIEQLEQEEEKLK-----ERLEELEEDLS 747

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1515 ERSQELAsqwqlvheraddgkspskgqrgslehlklilrDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVgetslll 1594
Cdd:TIGR02169  748 SLEQEIE--------------------------------NVKSELKELEARIEELEEDLHKLEEALNDLEARL------- 788

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1595 thREQETATLQQHLQEAKEQgelrEQVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHAT 1674
Cdd:TIGR02169  789 --SHSRIPEIQAELSKLEEE----VSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGK 862

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1675 LKERQGELEEHREQVRRLQEElevegrqvraleevLGDLRAESREHEKAVLALQQRcaeqAQEHEAEARTLQDSWLQAQA 1754
Cdd:TIGR02169  863 KEELEEELEELEAALRDLESR--------------LGDLKKERDELEAQLRELERK----IEELEAQIEKKRKRLSELKA 924

                          730       740       750       760
                   ....*....|....*....|....*....|....*....|....*
gi 1720397337 1755 TLTEQEQELAALrAENQYSRRQEEAAVSQAEALQEALSKAQAALQ 1799
Cdd:TIGR02169  925 KLEALEEELSEI-EDPKGEDEEIPEEELSLEDVQAELQRVEEEIR 968
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 784-1703 4.86e-08

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 58.54  E-value: 4.86e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  784 DMKIQKLKEQ-----ETTGMLQAQLQETQQELkEAAQQHRDDLAAFQKDKLDLQK-QVEDLMSQLVAHDDSQRLVKEEIE 857
Cdd:TIGR02169  169 DRKKEKALEEleeveENIERLDLIIDEKRQQL-ERLRREREKAERYQALLKEKREyEGYELLKEKEALERQKEAIERQLA 247

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  858 EKVKVAQECSRIQKELEKENASLALSLVEKEKRLLILQEADSVRqqelssLRQDIQEAQEGQRELGVQVELLRQEVKEKE 937
Cdd:TIGR02169  248 SLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLR------VKEKIGELEAEIASLERSIAEKERELEDAE 321

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  938 AdfvaREAQLLEELEASRVAEQQLRASLWAQEAKATQLQLQLRSTESQLEALVAEQQPENQAQAQLASLCSVLQQALGSA 1017
Cdd:TIGR02169  322 E----RLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKL 397

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1018 CESRPELRGGGDsaptlwgpdpdqngasRLFKRwslptalspeavalaLQKLHQDVWKARQARDDLRDQVQKLVQRLTDT 1097
Cdd:TIGR02169  398 KREINELKRELD----------------RLQEE---------------LQRLSEELADLNAAIAGIEAKINELEEEKEDK 446

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1098 EAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDLHETAASLQSRLRQAELQKMEAQNDRELLQASKEKLSAQ 1177
Cdd:TIGR02169  447 ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGT 526

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1178 VEHL-------QACVAEAQAQADAAAVLEEDLRTARSALKLKNE-----------ELESERERAQALQEQGELKVAQgka 1239
Cdd:TIGR02169  527 VAQLgsvgeryATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRkagratflplnKMRDERRDLSILSEDGVIGFAV--- 603

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1240 lqeNLALLAQTLSNREREVETLQAEVQELEKQRE-MQKAALELLSLDLKKRSREVDLQQEQIQELEQcrsvlehlpMAVQ 1318
Cdd:TIGR02169  604 ---DLVEFDPKYEPAFKYVFGDTLVVEDIEAARRlMGKYRMVTLEGELFEKSGAMTGGSRAPRGGIL---------FSRS 671

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1319 EREQKLSVqRDQIRELENDREAQRSVLEHQLLDLEQKAQVIESQRGQIQDLKKQLgtlECLALELEESHHKVESQQKMIT 1398
Cdd:TIGR02169  672 EPAELQRL-RERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEI---EQLEQEEEKLKERLEELEEDLS 747

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1399 ELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHlaKELQERDQEVTSQRQQIDELQKQQEQLAQALERKG 1478
Cdd:TIGR02169  748 SLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH--SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLT 825

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1479 QELVLQKERIQVLEDQRtlqtkileEDLEQIKHSLRERSQELasqwqlvheraddgkspskgqRGSLEHLKLILRDKEKE 1558
Cdd:TIGR02169  826 LEKEYLEKEIQELQEQR--------IDLKEQIKSIEKEIENL---------------------NGKKEELEEELEELEAA 876

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1559 VECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQGELREQVLQGQLEEAQRDLAQRDH 1638
Cdd:TIGR02169  877 LRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDV 956

                          890       900       910       920       930       940
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720397337 1639 ELEtlRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQV 1703
Cdd:TIGR02169  957 QAE--LQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREV 1019
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
492-960 6.10e-08

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 58.13  E-value: 6.10e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  492 TQLETQLQKAEEAgaELQAELRGTREEKEELKDKLSEAHHQQETATAHLEQLHQDAERQEETLaravQEKEALVRERAAL 571
Cdd:PRK02224   190 DQLKAQIEEKEEK--DLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERR----EELETLEAEIEDL 263

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  572 EVRLQAVERDRQDLTEHVLGLRSAKEQLESNLFEAQQQNSVIQVTKGQLEVQIQTIIQAKEVIQGEVKCLKLELDAERTR 651
Cdd:PRK02224   264 RETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEE 343

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  652 AEQEWDAVARQLAQAE--QEGQASLERQKVAHEEEVNRLQEKWEkerswlqqELDKTLETLERERAELETKLREQQTEME 729
Cdd:PRK02224   344 AESLREDADDLEERAEelREEAAELESELEEAREAVEDRREEIE--------ELEEEIEELRERFGDAPVDLGNAEDFLE 415

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  730 AIRAQREEERSqaDSALYQMQLETEKERVSLLETLLRTQK-----------------------------ELADASQQLER 780
Cdd:PRK02224   416 ELREERDELRE--REAELEATLRTARERVEEAEALLEAGKcpecgqpvegsphvetieedrerveeleaELEDLEEEVEE 493

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  781 LrqDMKIQKLKEQETTGMLQAQLQETQQELKEAAQQHRDDLAAFQKDKLDLQKQVEDLMSQLVAHDDSQRLVKEEIEEKV 860
Cdd:PRK02224   494 V--EERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAR 571

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  861 KVAQECSRIQKELEKENASLAlslvekekrllilqeadsvRQQELSSLRQDIQEAQEGQRELGVQVELLRQEVKEKEADF 940
Cdd:PRK02224   572 EEVAELNSKLAELKERIESLE-------------------RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEK 632

                          490       500
                   ....*....|....*....|
gi 1720397337  941 VAREAQLLEELEASRVAEQQ 960
Cdd:PRK02224   633 RERKRELEAEFDEARIEEAR 652
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 332-570 6.93e-08

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 57.08  E-value: 6.93e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  332 SAQGEKLEQQEELHLAVRERERLQETLVGLEAKQSESLSELLTLREALESSRLEGELLKQERVEVAAALARAEQSIVELS 411
Cdd:COG4942     17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  412 GSENSLKAEVADLRAAAVKLGALNEALALDKVELNQQLLqleqenqslcSRVEAAEQLRSALQVDLAEAERRREALWEKK 491
Cdd:COG4942     97 AELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAV----------RRLQYLKYLAPARREQAEELRADLAELAALR 166

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720397337  492 TQLETQLQKAEEAGAELQAELRGTREEKEELKDKLSEAHHQQETATAHLEQLHQDAERQEETLARAVQEKEALVRERAA 570
Cdd:COG4942    167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
PTZ00121 PTZ00121
MAEBL; Provisional
 1458-2069 8.00e-08

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 58.23  E-value: 8.00e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1458 QQIDELQKQQEQLAQALERKGQELVLQKERIQVLEDQRTLQTKILEEDLEQIKHSLRERSQELASQWQLVHERADDGKSP 1537
Cdd:PTZ00121  1212 RKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKK 1291

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1538 SKGQRGSLEHLKLilrDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQGEL 1617
Cdd:PTZ00121  1292 ADEAKKAEEKKKA---DEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEA 1368

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1618 REQvlqgQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEqahatlKERQGELEEHREQVRRlQEELE 1697
Cdd:PTZ00121  1369 AEK----KKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAA------KKKADEAKKKAEEKKK-ADEAK 1437

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1698 VEGRQVRALEEVLGDLRAESREHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAQatltEQEQELAALRAENQYSRRQE 1777
Cdd:PTZ00121  1438 KKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAE----EAKKKADEAKKAAEAKKKAD 1513

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1778 EAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLEE----ALRIREGEIQAQALQ 1853
Cdd:PTZ00121  1514 EAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEdknmALRKAEEAKKAEEAR 1593

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1854 HHEVTQHLQQELCQKKEELRQLLE---KAGARRSQENGIQEKQSLEQERQEETRRLLESLKELQLTVAQREEEilmLREA 1930
Cdd:PTZ00121  1594 IEEVMKLYEEEKKMKAEEAKKAEEakiKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEE---AKKA 1670

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1931 SSPRHRALPAEKPALQPLPAQQELERLQTALRQTE---AREIEWREKAQDLALSLAQSKASISSLQeitmflqasvlERE 2007
Cdd:PTZ00121  1671 EEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEelkKKEAEEKKKAEELKKAEEENKIKAEEAK-----------KEA 1739

                          570       580       590       600       610       620
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720397337 2008 SEQQRLQEELVLSRQALEEQQSGGPHSTSRADQGPKVGQGSQSGEVETEPSPGVEEKERLTQ 2069
Cdd:PTZ00121  1740 EEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIK 1801
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 1403-1727 8.56e-08

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 57.77  E-value: 8.56e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1403 QREMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQalerkgqelv 1482
Cdd:TIGR02169  217 LKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGE---------- 286

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1483 lqkeriqvlEDQRTLQTKI--LEEDLEQIKHSLRERSQELasqwQLVHERADDGKSPSKGQRGSLEHLKLILRDKEKEVE 1560
Cdd:TIGR02169  287 ---------EEQLRVKEKIgeLEAEIASLERSIAEKEREL----EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRD 353

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1561 CQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQgelrEQVLQGQLEEAQRDLAQRDHEL 1640
Cdd:TIGR02169  354 KLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRE----LDRLQEELQRLSEELADLNAAI 429

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1641 ETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLGDLRAESREH 1720
Cdd:TIGR02169  430 AGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGG 509


                   ....*..
gi 1720397337 1721 EKAVLAL 1727
Cdd:TIGR02169  510 RAVEEVL 516
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1257-1808 9.91e-08

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 57.62  E-value: 9.91e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1257 EVETLQAEVQELEK-QREMQKAA--LELLSlDLKKRSREVDLQQEQIQELEQCRSVLEHlpmavQEREQKLSVQRDQIRE 1333
Cdd:COG4913    226 AADALVEHFDDLERaHEALEDAReqIELLE-PIRELAERYAAARERLAELEYLRAALRL-----WFAQRRLELLEAELEE 299

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1334 LENDR---EAQRSVLEHQLLDLEQKAQVIESQR-----GQIQDLKKQLGTLECLALELEESHHKVESQQKMIT-ELEGQR 1404
Cdd:COG4913    300 LRAELarlEAELERLEARLDALREELDELEAQIrgnggDRLEQLEREIERLERELEERERRRARLEALLAALGlPLPASA 379

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1405 EMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQID----ELQKQQEQLAQALERKGQE 1480
Cdd:COG4913    380 EEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSnipaRLLALRDALAEALGLDEAE 459

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1481 LVLQKERIQVLEDQ-----------RTLQTKIL--EEDLEQIKHSLRERSQELASQWQLVHERADDGKSPsKGQRGSLEH 1547
Cdd:COG4913    460 LPFVGELIEVRPEEerwrgaiervlGGFALTLLvpPEHYAAALRWVNRLHLRGRLVYERVRTGLPDPERP-RLDPDSLAG 538

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1548 lKLILRDKEKEvecqqeriQELQGHMGQleqqlQGLHRKVGETSLLLTHREQETATLQ----QHLQEAKEQGELREQVLQ 1623
Cdd:COG4913    539 -KLDFKPHPFR--------AWLEAELGR-----RFDYVCVDSPEELRRHPRAITRAGQvkgnGTRHEKDDRRRIRSRYVL 604

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1624 GQleEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALE--QAHATLKERQGELEEHREQVRRLQEE---LEV 1698
Cdd:COG4913    605 GF--DNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREalQRLAEYSWDEIDVASAEREIAELEAElerLDA 682

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1699 EGRQVRALEEVLGDLRAESREHEKAVLALQQRCAEQAQEHEaEARTLQDSWLQAQATLTEQEQELAALRAENQYSRRQEE 1778
Cdd:COG4913    683 SSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELE-QAEEELDELQDRLEAAEDLARLELRALLEERFAAALGD 761

                          570       580       590
                   ....*....|....*....|....*....|.
gi 1720397337 1779 AAVSQ-AEALQEALSKAQAALQEKEQSLLEQ 1808
Cdd:COG4913    762 AVERElRENLEERIDALRARLNRAEEELERA 792
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1062-1278 1.50e-07

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 55.93  E-value: 1.50e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1062 VALALQKLHQDVWKARQARDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDLHE 1141
Cdd:COG4942     11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1142 TAASLQSRLRQ---------AELQKMEAQNDRELLQASK---------EKLSAQVEHLQACVAEAQAQADAAAVLEEDLR 1203
Cdd:COG4942     91 EIAELRAELEAqkeelaellRALYRLGRQPPLALLLSPEdfldavrrlQYLKYLAPARREQAEELRADLAELAALRAELE 170

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720397337 1204 TARSALKLKNEELESERERAQALQEQGELKVAQgkaLQENLALLAQTLSNREREVETLQAEVQELEKQREMQKAA 1278
Cdd:COG4942    171 AERAELEALLAELEEERAALEALKAERQKLLAR---LEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
84-601 1.76e-07

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 56.59  E-value: 1.76e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337   84 EKAELQDRVTELSALLTQSQKQNEDYEKMVKALRETMEILEtnhAELMEHEASlsrnaQEEKLSLQQVIKAITQALASVE 163
Cdd:PRK02224   200 EEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEAD---EVLEEHEER-----REELETLEAEIEDLRETIAETE 271

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  164 EE-----DTVTQSSGHEDSLQSDCNGL---SQFDPQDPDRALTLVQSVLTRRQQAVQDLRQQLSGCQEAMS---FLQQQH 232
Cdd:PRK02224   272 REreelaEEVRDLRERLEELEEERDDLlaeAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEeaeSLREDA 351

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  233 DQWEEEGRALREKLQKLTGERDALAGQTVGLQGEVDSLTGERDALAGQTVDLQGEVDSLSRERELLQKARGELQQQLEVL 312
Cdd:PRK02224   352 DDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAEL 431

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  313 E---QEAWRLRRMNMELQLQG----------DSAQGEKLEQQEElhlavrERERLQETLVGLEAKQSESLSELLTLREAL 379
Cdd:PRK02224   432 EatlRTARERVEEAEALLEAGkcpecgqpveGSPHVETIEEDRE------RVEELEAELEDLEEEVEEVEERLERAEDLV 505

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  380 ESSRlEGELLKQERVEVAAALARAEQSIVELSGSENSLKAEVADLRAAAVKLGALNEALALDKVELNQQLLQLEQENQSL 459
Cdd:PRK02224   506 EAED-RIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAEL 584

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  460 CSRVEAAEQLRSaLQVDLAEAERRREALWEKKTQLetqlqkaeeagAELQAELRGTREEKEELKDKLSEAHHQqetatAH 539
Cdd:PRK02224   585 KERIESLERIRT-LLAAIADAEDEIERLREKREAL-----------AELNDERRERLAEKRERKRELEAEFDE-----AR 647

                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720397337  540 LEQLHQDAERQEETLARAVQEKEALVRERAALEVRLQAVERDRQDLTEhvlgLRSAKEQLES 601
Cdd:PRK02224   648 IEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEE----LRERREALEN 705
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 713-946 3.63e-07

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 54.77  E-value: 3.63e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  713 ERAELETKLREQQTEMEAIRAQREEERSQADSALYQMQlETEKERVSLLETLLRTQKELADASQQLERLRQDMKIQKLKE 792
Cdd:COG4942     21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLA-ALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  793 QETTGMLQAQLQETQQelkeAAQQHRDDLAAFQKDKLDLQKQVEdLMSQLVAHDdsqrlvKEEIEEKVKVAQECSRIQKE 872
Cdd:COG4942    100 EAQKEELAELLRALYR----LGRQPPLALLLSPEDFLDAVRRLQ-YLKYLAPAR------REQAEELRADLAELAALRAE 168

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720397337  873 LEKENASLALSLVEKEKRLLILQEADSVRQQELSSLRQDIQEAQEGQRELGVQVELLRQEVKEKEADFVAREAQ 946
Cdd:COG4942    169 LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 481-1162 3.97e-07

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 55.51  E-value: 3.97e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  481 ERRREALWEKKTQLETQLQKAEEAGAELQAELRGTREEKEELKDKLSEAHHQQETATAHLEQLHQDAERQEETLARAVQE 560
Cdd:pfam15921  102 EKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLS 181

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  561 KEALVRERAALEVRLQavERDRQDLTEH----VLGLRSAKEQLESNLFEAQQQNSVIQVTKGQLEVQIQTIiqaKEVIQG 636
Cdd:pfam15921  182 HEGVLQEIRSILVDFE--EASGKKIYEHdsmsTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEAL---KSESQN 256

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  637 EVKCLkleLDAERTRAEQ-------------EWDAVARQLAQAEQEGQASLERQKVAHEEEVNRLQEKWEKERSWLQQEL 703
Cdd:pfam15921  257 KIELL---LQQHQDRIEQliseheveitgltEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSEL 333

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  704 DKTLETLERERAELETKLREQQTEMEAIRAQREEERSQADSALYQMQletekervSLLETLLRTQKELADASQQLERL-- 781
Cdd:pfam15921  334 REAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQ--------KLLADLHKREKELSLEKEQNKRLwd 405

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  782 ------------RQDMKIQKLKEQETTGMLQAQLQETQQELKEaaqqhrdDLAAFQKDKLDLQKqVEDLMSQLVAHDDSQ 849
Cdd:pfam15921  406 rdtgnsitidhlRRELDDRNMEVQRLEALLKAMKSECQGQMER-------QMAAIQGKNESLEK-VSSLTAQLESTKEML 477

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  850 RLVKEEIEEKVKVAQECSRIQKELEKENASLALSLVEKEKRLLILQEADSVRQQELSSLRQDIQEAQEGQRE---LGVQ- 925
Cdd:pfam15921  478 RKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTEceaLKLQm 557

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  926 ------VELLRQEVK----------EKEADFVAREAQLLEELEASRVAEQQLRASLWAQEAKATQLQLQLRSTESQLEAL 989
Cdd:pfam15921  558 aekdkvIEILRQQIEnmtqlvgqhgRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKL 637

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  990 VAEQQPE-------NQAQAQLASLCSVLQQALGSACES----RPELRGGGDSAPTLWGPDPDQNGASRLFKRWSLPTALS 1058
Cdd:pfam15921  638 VNAGSERlravkdiKQERDQLLNEVKTSRNELNSLSEDyevlKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKS 717

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1059 PEA-------VALALQKlhqDVWKARQARDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNS 1131
Cdd:pfam15921  718 MEGsdghamkVAMGMQK---QITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEV 794

                          730       740       750
                   ....*....|....*....|....*....|.
gi 1720397337 1132 LESELRDLHETAASLQSRLRQAELQKMEAQN 1162
Cdd:pfam15921  795 LRSQERRLKEKVANMEVALDKASLQFAECQD 825
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 339-1242 4.78e-07

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 55.46  E-value: 4.78e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  339 EQQEELHLAVRERERLQETLVGLEAKQSESLSELLTLR----EALESSRLEGELLKQERVEVAAALARAEQSIVELSGSE 414
Cdd:TIGR02169  167 EFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRrereKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQL 246

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  415 NSLKAEVADLRAAAVKLGALNEALAldkvelnqqllqleQENQSLCSRVEA-AEQLRSALQVDLAEAERRREALWEKKTQ 493
Cdd:TIGR02169  247 ASLEEELEKLTEEISELEKRLEEIE--------------QLLEELNKKIKDlGEEEQLRVKEKIGELEAEIASLERSIAE 312

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  494 LETQLQKAEEAGAELQAELRGTREEKEELKDKLseahhqqetatahleqlhQDAERQEETLARAVQEKEAlvrERAALEV 573
Cdd:TIGR02169  313 KERELEDAEERLAKLEAEIDKLLAEIEELEREI------------------EEERKRRDKLTEEYAELKE---ELEDLRA 371

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  574 RLQAVERDRQDLTEHVLGLRSAKEQLESNLFEAQQQNSVIQVTKGQLEVQIQTIIQAKEVIQGEVKclklELDAERtrae 653
Cdd:TIGR02169  372 ELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKIN----ELEEEK---- 443

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  654 qewDAVARQLAQAEQEGQaSLERQKVAHEEEVNRLQEKwekerswlQQELDKTLETLERERAELETKLREQQTEMEAIRA 733
Cdd:TIGR02169  444 ---EDKALEIKKQEWKLE-QLAADLSKYEQELYDLKEE--------YDRVEKELSKLQRELAEAEAQARASEERVRGGRA 511

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  734 QREEERSQADSALYQM-QLETEKER-VSLLETLL--RTQKELADASQQLERLrqdmkIQKLKEQETTGMLQAQLQETQQE 809
Cdd:TIGR02169  512 VEEVLKASIQGVHGTVaQLGSVGERyATAIEVAAgnRLNNVVVEDDAVAKEA-----IELLKRRKAGRATFLPLNKMRDE 586

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  810 LKEAAQQHRDDLAAFQKDKLDLQKQVEDLMSQLV-------------AHDDSQRLV--KEEIEEKVKVAQECSR------ 868
Cdd:TIGR02169  587 RRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYVFgdtlvvedieaarRLMGKYRMVtlEGELFEKSGAMTGGSRaprggi 666

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  869 -IQKELEKENASLALSLVEKEKRLLILQEADSVRQQELSSLRQDIQEAQEGQRELgvqvELLRQEVKEKEADFVAREAQL 947
Cdd:TIGR02169  667 lFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEI----EKEIEQLEQEEEKLKERLEEL 742

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  948 LEELEASRVAEQQLRASLWAQEAKATQLQLQLRSTESQLEALVAEQQPENQAQaqlaslcsvLQQALGSACESRPELRGG 1027
Cdd:TIGR02169  743 EEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPE---------IQAELSKLEEEVSRIEAR 813

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1028 GDSAptlwgpdpDQNGASRLFKRWSLPTALSPEAVALALQKLHQDVWKARQarDDLRDQVQKLVQRLTDTEAQKSQVHSE 1107
Cdd:TIGR02169  814 LREI--------EQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI--ENLNGKKEELEEELEELEAALRDLESR 883

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1108 LQDLQRQLSQSQEEKSKWEGRQNSLESELRDLHETAASLQSRLrqaelqkmEAQNDREllqASKEKLSAQVEHLQACVAE 1187
Cdd:TIGR02169  884 LGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKL--------EALEEEL---SEIEDPKGEDEEIPEEELS 952

                          890       900       910       920       930
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1720397337 1188 AQAQADAAAVLEEDLRTARSALKLKNEELESERERAQALQEQGELKVAQGKALQE 1242
Cdd:TIGR02169  953 LEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILE 1007
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
229-728 6.10e-07

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 55.05  E-value: 6.10e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  229 QQQHDQWEEEGRALREKLQKLTGERDALAGQTVGLQGEVDSLTGERDALAGQTVDLQGEVDSLSRERELLQKARGELQQQ 308
Cdd:PRK02224   250 REELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDR 329

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  309 LEVLEQEAWRLRRmnmelqlQGDSAQGEKLEQQEELHLAVRERERLQETLVGLEAKQSESLSELLTLREALESSRLEGEL 388
Cdd:PRK02224   330 LEECRVAAQAHNE-------EAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGD 402

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  389 LKQERVEVAAALARAEQSIVELSGSENSLKAEVADLRAAAVKLGALNEA-------LALDKVELNQQLLQLEQENQSLCS 461
Cdd:PRK02224   403 APVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAgkcpecgQPVEGSPHVETIEEDRERVEELEA 482

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  462 RVEAAEQLRSALQ------VDLAEAERRREALWEKKTQLETQLQKAEEAGAELQAELRGTREEKEELKdklSEAHHQQET 535
Cdd:PRK02224   483 ELEDLEEEVEEVEerleraEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELE---AEAEEKREA 559

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  536 ATAhleqLHQDAERQEETLARAVQEKEALVRERAALEvRLQAVERDRQDLTEHVLGLRSAKEQLESNLFEAQQQNSVIQV 615
Cdd:PRK02224   560 AAE----AEEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRE 634

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  616 TKGQLEVQIQtiiqaKEVIQgevkclklELDAERTRAEQEWDAVARQLAQAEQEgQASLERQKVAHEEEVNRLQEKWEkE 695
Cdd:PRK02224   635 RKRELEAEFD-----EARIE--------EAREDKERAEEYLEQVEEKLDELREE-RDDLQAEIGAVENELEELEELRE-R 699

                          490       500       510
                   ....*....|....*....|....*....|...
gi 1720397337  696 RSWLQQELDKtLETLERERAELETKLREQQTEM 728
Cdd:PRK02224   700 REALENRVEA-LEALYDEAEELESMYGDLRAEL 731
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 569-926 6.16e-07

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 55.07  E-value: 6.16e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  569 AALEVRLQAVERDRQDLTEHVLGLRSAKEQLESNLFEAQQQNSVIQVTKGQLEVQIQTIIQAKEVIQGEVKCLKLELDA- 647
Cdd:TIGR02169  670 RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSl 749

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  648 --ERTRAEQEWDAVARQLAQ------AEQEGQASLERQKVAHE-EEVNRLQEKWEKERSWLQ---QELDKTLETLERERA 715
Cdd:TIGR02169  750 eqEIENVKSELKELEARIEEleedlhKLEEALNDLEARLSHSRiPEIQAELSKLEEEVSRIEarlREIEQKLNRLTLEKE 829

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  716 ELETKLREQQTEMEAIRAQREEERSQADSalyqmqLETEKErvSLLETLLRTQKELADASQQLERLRQDmkIQKLKEQet 795
Cdd:TIGR02169  830 YLEKEIQELQEQRIDLKEQIKSIEKEIEN------LNGKKE--ELEEELEELEAALRDLESRLGDLKKE--RDELEAQ-- 897

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  796 tgmlQAQLQETQQELKEAAQQHRDDLAafqkdklDLQKQVEDLMSQLVAHDDSQRLVKEEIEEKV---KVAQECSRIQKE 872
Cdd:TIGR02169  898 ----LRELERKIEELEAQIEKKRKRLS-------ELKAKLEALEEELSEIEDPKGEDEEIPEEELsleDVQAELQRVEEE 966

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1720397337  873 ---LEKENASLALSLVEKEKRLLILQEADSVRQQELSSLRQDIQEAQEGQRELGVQV 926
Cdd:TIGR02169  967 iraLEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFMEA 1023
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 1260-1696 8.72e-07

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 54.26  E-value: 8.72e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1260 TLQAEVQELEKQREMQKAALELLSLDLKKRSREVDLQQEQIQELEqcrSVLEHLPMAVQEREQKLSVQRDQIRELENdre 1339
Cdd:TIGR04523  215 SLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLK---DEQNKIKKQLSEKQKELEQNNKKIKELEK--- 288

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1340 aQRSVLEHQLLDLE-QKAQVIESQ-RGQIQDLKKQLgtleclalelEESHHKVESQQKMITELEGQREMQRVALTHLTLD 1417
Cdd:TIGR04523  289 -QLNQLKSEISDLNnQKEQDWNKElKSELKNQEKKL----------EEIQNQISQNNKIISQLNEQISQLKKELTNSESE 357

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1418 LEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERKGQELVLQKERIQVLEDQRTL 1497
Cdd:TIGR04523  358 NSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIK 437

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1498 QTKILeEDLEQIKHSLRERSQELASQWQLVHERADDGKSPSKGQRGSLEHLKLILRDKEKEVECQQERIQELQGHMGQLE 1577
Cdd:TIGR04523  438 NNSEI-KDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLT 516

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1578 QQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEqgELREQVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESM 1657
Cdd:TIGR04523  517 KKISSLKEKIEKLESEKKEKESKISDLEDELNKDDF--ELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQK 594

                          410       420       430
                   ....*....|....*....|....*....|....*....
gi 1720397337 1658 KLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEEL 1696
Cdd:TIGR04523  595 EKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSII 633
mukB PRK04863
chromosome partition protein MukB;
480-859 8.93e-07

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 54.58  E-value: 8.93e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  480 AERRREALwEKKTQLETQLQKAEEAGAELQAELRGTREEKEELKDKLSEAHHQQETATAHLeQLHQDAERQEETLARAVQ 559
Cdd:PRK04863   278 ANERRVHL-EEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHL-NLVQTALRQQEKIERYQA 355

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  560 EKEALVrerAALEVRLQAVErdrqDLTEHVLGLRSAKEQLESNLFEAQ------QQNSVIQVTKGqleVQIQTIIQAKEV 633
Cdd:PRK04863   356 DLEELE---ERLEEQNEVVE----EADEQQEENEARAEAAEEEVDELKsqladyQQALDVQQTRA---IQYQQAVQALER 425

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  634 IQGEVKCLKLELD------AERTRAEQEWDAVARQLAQAEQEGQASLERQKVAHE------EEVNRlQEKWEKERSWL-- 699
Cdd:PRK04863   426 AKQLCGLPDLTADnaedwlEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQlvrkiaGEVSR-SEAWDVARELLrr 504

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  700 ---QQELDKTLETLERERAELETKLREQQTemeAIRAQREeersqadsalYQMQLETEKERVSLLETLLrtqkeladasQ 776
Cdd:PRK04863   505 lreQRHLAEQLQQLRMRLSELEQRLRQQQR---AERLLAE----------FCKRLGKNLDDEDELEQLQ----------E 561

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  777 QLERLRQDMKIQKLKEQETTGMLQAQLQETQQELKEAAQQHRDDLAAFQK---------DKLDLQKQVEDLMSQLVAHDD 847
Cdd:PRK04863   562 ELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDAlarlreqsgEEFEDSQDVTEYMQQLLERER 641

                          410
                   ....*....|..
gi 1720397337  848 SQRLVKEEIEEK 859
Cdd:PRK04863   642 ELTVERDELAAR 653
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 862-1709 1.01e-06

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 54.30  E-value: 1.01e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  862 VAQECSRIQKELEKENASLALSLVEKEKRLLILQEADSVRQQELSSLRQDIQEAQEGQRELGVQVELLRQEVKEKEADFV 941
Cdd:TIGR02169  196 KRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLE 275

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  942 AREAQLLEELEASRVAEQqlraslwaqeAKATQLQLQLRSTESQLEALVAEQQpenQAQAQLASLCSVLQQALGSACESR 1021
Cdd:TIGR02169  276 ELNKKIKDLGEEEQLRVK----------EKIGELEAEIASLERSIAEKERELE---DAEERLAKLEAEIDKLLAEIEELE 342

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1022 PELrgggdsaptlwgpdpdqngasrlfkrwslptalspEAVALALQKLHQDVWKARQARDDLRDQVQKL-------VQRL 1094
Cdd:TIGR02169  343 REI-----------------------------------EEERKRRDKLTEEYAELKEELEDLRAELEEVdkefaetRDEL 387

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1095 TDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDLHETAASLQSRLRQAELQKMEAQNDRELLQASKEKL 1174
Cdd:TIGR02169  388 KDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKY 467

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1175 SAQVEHLQacvaeaqaqadaaavleEDLRTARSALKLKNEELESERERAQALQEQGELKVAQGKALQENL----ALLAQT 1250
Cdd:TIGR02169  468 EQELYDLK-----------------EEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIqgvhGTVAQL 530

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1251 LSNRERE----------------VETLQAEVQELEKQREMQKAALELLSLDlKKRSREVDLQQEQIQeleqcrSVLEHLP 1314
Cdd:TIGR02169  531 GSVGERYataievaagnrlnnvvVEDDAVAKEAIELLKRRKAGRATFLPLN-KMRDERRDLSILSED------GVIGFAV 603

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1315 MAVQEREQKLSVQRDQIRE---LENDREAQRSVLEHQLLDLE----QKAQVI----ESQRGQIQDLKKQLGtleclalel 1383
Cdd:TIGR02169  604 DLVEFDPKYEPAFKYVFGDtlvVEDIEAARRLMGKYRMVTLEgelfEKSGAMtggsRAPRGGILFSRSEPA--------- 674

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1384 eeshhKVESQQKMITELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHELEnhsthlaKELQERDQEVTSQRQQIDEL 1463
Cdd:TIGR02169  675 -----ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIE-------KEIEQLEQEEEKLKERLEEL 742

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1464 QKQQEQLAQALERKGQELVLQKERIQvledQRTLQTKILEEDLEQIKHSLRErsqelaSQWQLVHERADDGKSPSKGQRG 1543
Cdd:TIGR02169  743 EEDLSSLEQEIENVKSELKELEARIE----ELEEDLHKLEEALNDLEARLSH------SRIPEIQAELSKLEEEVSRIEA 812

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1544 SLEHLKLILRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQEtatlqqhlqEAKEQGELREqvLQ 1623
Cdd:TIGR02169  813 RLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEE---------LEELEAALRD--LE 881

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1624 GQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQV------RRLQEELE 1697
Cdd:TIGR02169  882 SRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPeeelslEDVQAELQ 961

                          890
                   ....*....|..
gi 1720397337 1698 VEGRQVRALEEV 1709
Cdd:TIGR02169  962 RVEEEIRALEPV 973
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
 624-1477 1.15e-06

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 54.21  E-value: 1.15e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  624 IQTIIQAKEVIQGEVKCLKLELDAERTRAEQEWDAVARQLAQAEQEGQASLERQKVAHEEEVNRLQEKWEKERswlQQEL 703
Cdd:pfam02463  186 AELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQ---EIEK 262

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  704 DKTLETLERERAELETKLREQQTEMEAIRAQREEERSQADSALYQMQLETEKERVSLLETLLRTQKELADASQQLERLRQ 783
Cdd:pfam02463  263 EEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEK 342

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  784 DMKIQKLKEQEttgmLQAQLQETQQELKEAAQQHRDDLAAFQKDKLDLQKQVEDLmsqlvahdDSQRLVKEEIEEKVKVA 863
Cdd:pfam02463  343 ELKELEIKREA----EEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLK--------EEELELKSEEEKEAQLL 410

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  864 QECSRIQKELEKENASLALSLVEKEKRLLILQEADSVRQQELSSLRQDIQEAQEGQRELGVQVELLRQEVKEKEADFVAR 943
Cdd:pfam02463  411 LELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLL 490

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  944 EAQLLEELEASRVAEQQLRASLWAQEAKATQLQLQLRStESQLEALVAEQQPENQAQAQLASLCSVLQQALGSACESRPE 1023
Cdd:pfam02463  491 SRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAH-GRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRA 569

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1024 LRGGGDSAPTLWGPDPDQNGASRLFKRWSLPTALSPEAVALALQKLHQDVWKARQARDDLRDQVQKLVQRLTDTEAQKSQ 1103
Cdd:pfam02463  570 LTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLR 649

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1104 VHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDLHETAASLQSRLRQAELQKMEaqndrELLQASKEKLSAQVEHLQA 1183
Cdd:pfam02463  650 KGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKE-----QREKEELKKLKLEAEELLA 724

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1184 CVAEAQAQADAAAVLEEDLRTARSALKLKNEELESERERAQALQEQGELKVAQGKALQENLALLAQTLSNREREVETLQA 1263
Cdd:pfam02463  725 DRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELR 804

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1264 EVQELEKQREMQKAALELLSLDLKKRSREVDLQQEQIQELEQCR--SVLEHLPMAVQEREQKLSVQRDQIRELENDREAQ 1341
Cdd:pfam02463  805 ALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLekLAEEELERLEEEITKEELLQELLLKEEELEEQKL 884

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1342 RSVLEHQLLDLEQKAQVIESQRGQIQDLKKQlgtLECLALELEESHHKVESQQKMITELEGQREMQRVALTHLTLDLEER 1421
Cdd:pfam02463  885 KDELESKEEKEKEEKKELEEESQKLNLLEEK---ENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEER 961

                          810       820       830       840       850
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1720397337 1422 SQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERK 1477
Cdd:pfam02463  962 NKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQ 1017
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
 377-1004 1.83e-06

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 53.69  E-value: 1.83e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  377 EALESSRLE--GELLKQERVEVAAALARAEQSIVELSGSENSLKAEVADLRAAAVKLGALNEALALDKVELNQQLLQLEQ 454
Cdd:pfam12128  271 ETLIASRQEerQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLP 350

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  455 ENQSLCSRVEAAEQLRSALQVDLAEAERRREALW-------------EKKTQLETQLQKAEEAGAELQAELRGTREEKEE 521
Cdd:pfam12128  351 SWQSELENLEERLKALTGKHQDVTAKYNRRRSKIkeqnnrdiagikdKLAKIREARDRQLAVAEDDLQALESELREQLEA 430

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  522 LKDKLSEAHHQQETATAHLEQLHQDAERQEETLARAVQEKEALVRERAALEVRLQAVERDRQDLTEHVLGLRSAKEQLES 601
Cdd:pfam12128  431 GKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQ 510

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  602 NLFEAQQQNSVIQVTKGQLEVQIQTIIQ--AKEVIQGEVKCLKLELDAERTRAEQEWDAVARQLAQAEQEGQASLERQKV 679
Cdd:pfam12128  511 ASRRLEERQSALDELELQLFPQAGTLLHflRKEAPDWEQSIGKVISPELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRI 590

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  680 AHEEevnrlqekwekersWLQQEldktlETLERERAELETKLREQQTEMEAIraqrEEERSQADSALYQMQLETEKERVS 759
Cdd:pfam12128  591 DVPE--------------WAASE-----EELRERLDKAEEALQSAREKQAAA----EEQLVQANGELEKASREETFARTA 647

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  760 LLETLLRTQKELADASQQLERLRQDMKIQKLKEQETTGMLQAQLQETQQELKEAAQQHRDDLAAFQKDKLDLQKQVEDlm 839
Cdd:pfam12128  648 LKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEG-- 725

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  840 sqlvAHDDSQRLVKEEIE-EKVKVAQECSRIQKELEKENASLA-----LSLVEKEKRLLILQEAD-SVRQQELSSLRQDI 912
Cdd:pfam12128  726 ----ALDAQLALLKAAIAaRRSGAKAELKALETWYKRDLASLGvdpdvIAKLKREIRTLERKIERiAVRRQEVLRYFDWY 801

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  913 QEAQEGQRE-LGVQVELLRQEVKEKEADFvareAQLLEELEASRVAEQQLRASLWAQEAKATQLQLQLRSTESQLeALVA 991
Cdd:pfam12128  802 QETWLQRRPrLATQLSNIERAISELQQQL----ARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKL-ATLK 876

                          650
                   ....*....|...
gi 1720397337  992 EQQPENQAQAQLA 1004
Cdd:pfam12128  877 EDANSEQAQGSIG 889
PRK11281 PRK11281
mechanosensitive channel MscK;
1602-1918 1.98e-06

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 53.38  E-value: 1.98e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1602 ATLQQHLQEAKEQGELREQ--VLQGQLEEAQRDLAQRD---HELETLRQE-----KQQTQDQEESMKLKTSALQAALEQ- 1670
Cdd:PRK11281    39 ADVQAQLDALNKQKLLEAEdkLVQQDLEQTLALLDKIDrqkEETEQLKQQlaqapAKLRQAQAELEALKDDNDEETRETl 118

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1671 AHATLKERQGELEEHREQVRRLQEEL-------------------EVEGRQVRALEevLGDLRAESREHEKAVLALQQ-- 1729
Cdd:PRK11281   119 STLSLRQLESRLAQTLDQLQNAQNDLaeynsqlvslqtqperaqaALYANSQRLQQ--IRNLLKGGKVGGKALRPSQRvl 196

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1730 RCAEQA--------QEHEAEARTLQDSWLQAQ-----ATLTEQEQELAALRAE-NQYSRRQEEAAVSQAEALQEALSKAQ 1795
Cdd:PRK11281   197 LQAEQAllnaqndlQRKSLEGNTQLQDLLQKQrdyltARIQRLEHQLQLLQEAiNSKRLTLSEKTVQEAQSQDEAARIQA 276

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1796 AALQEKE--------QSLLEQAELSHTLEASTAALQATLDTCQASARQLEEALRIREGEI--------QAQALQHHEVTQ 1859
Cdd:PRK11281   277 NPLVAQEleinlqlsQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKGSLllsrilyqQQQALPSADLIE 356

                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720397337 1860 HL----------QQELCQKKEELRQL---LEKAGARRSQENGIQEKQSLEQ---ERQEetrrLLESL-KEL--QLTVA 1918
Cdd:PRK11281   357 GLadriadlrleQFEINQQRDALFQPdayIDKLEAGHKSEVTDEVRDALLQlldERRE----LLDQLnKQLnnQLNLA 430
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 1212-1805 1.99e-06

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 53.10  E-value: 1.99e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1212 KNEELESERERAQALQEQGELKVAQGKALQENLALLAQTLSNREREVETLQAEVQELEKQREMQKAALELLSLDLKKRSR 1291
Cdd:TIGR04523   31 QDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINS 110

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1292 EVDLqqeqiqeleqcrsvlehlpmavqeREQKLSVQRDQIRELENDREAQRSVLEHQLLDLEQKAQVIESQRGQIQDLKK 1371
Cdd:TIGR04523  111 EIKN------------------------DKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKK 166

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1372 QLGTLECLALELEESHHKVESQQKMItelegqrEMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQ 1451
Cdd:TIGR04523  167 QKEELENELNLLEKEKLNIQKNIDKI-------KNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQ 239

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1452 EVTSQRQQIDELQKQQEQLAQALERKGQELvlqKERIQVLEDQRTLqTKILEEDLEQIKHSLRERSQELASQWqlvhera 1531
Cdd:TIGR04523  240 EINEKTTEISNTQTQLNQLKDEQNKIKKQL---SEKQKELEQNNKK-IKELEKQLNQLKSEISDLNNQKEQDW------- 308

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1532 ddgkspskgqrgsLEHLKLILRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKvgetsllLTHREQETATLQQHLQEA 1611
Cdd:TIGR04523  309 -------------NKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKE-------LTNSESENSEKQRELEEK 368

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1612 KEqgelreqvlqgqleeaqrdlaqrdhELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVRR 1691
Cdd:TIGR04523  369 QN-------------------------EIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKEL 423

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1692 LQEELEVEGRQVRALEEVLGDLRAESREHEKAVLALQQRCAEQAQ---EHEAEARTLQDSWLQAQATLTEQEQELAALRA 1768
Cdd:TIGR04523  424 LEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETqlkVLSRSINKIKQNLEQKQKELKSKEKELKKLNE 503

                          570       580       590
                   ....*....|....*....|....*....|....*..
gi 1720397337 1769 ENQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQSL 1805
Cdd:TIGR04523  504 EKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKI 540
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 222-439 2.54e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 52.07  E-value: 2.54e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  222 QEAMSFLQQQHDQWEEEGRALREKLQKLTGERDALAGQTVGLQGEVDSLTGERDALAGQTVDLQGEVDSLSRERELLQKA 301
Cdd:COG4942     19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  302 RGELQQQLEVLEQEAWRLRRMNMELQLQGDSAQGEKLEQQEELHLAVRERERLQETLVGLEAKQSESLSELLTLREALES 381
Cdd:COG4942     99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1720397337  382 SRLEgelLKQERVEVAAALARAEQSIVELSGSENSLKAEVADLRAAAVKLGALNEALA 439
Cdd:COG4942    179 LLAE---LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
 684-1532 2.55e-06

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 53.05  E-value: 2.55e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  684 EVNRLQEKWEKERSWLQQELDKTLETlERERAELETKLREQQTEMEAIRAQREEERSQADSALyqMQLETEKERVSLLET 763
Cdd:pfam02463  143 KIEIIAMMKPERRLEIEEEAAGSRLK-RKKKEALKKLIEETENLAELIIDLEELKLQELKLKE--QAKKALEYYQLKEKL 219

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  764 LLRTQKELADASQQLERLRQDMKIQKLKEQETTGMLQAQLQETQQELKEAAQQHRDDLAAFQKDKLDLQKQVEDLMSQLV 843
Cdd:pfam02463  220 ELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELK 299

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  844 AHDDSQRLVKEEIEEKVKVAQ-ECSRIQKELEKE-----NASLALSLVEKEKRLLILQEADSVRQQELSSLRQD------ 911
Cdd:pfam02463  300 SELLKLERRKVDDEEKLKESEkEKKKAEKELKKEkeeieELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEellakk 379

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  912 -IQEAQEGQRELGVQVELLRQEVKEKEADFVAREAQLLEEL-------EASRVAEQQLRASLWAQEAKATQLQLQLRSTE 983
Cdd:pfam02463  380 kLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLlkeekkeELEILEEEEESIELKQGKLTEEKEELEKQELK 459

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  984 SQLEALVAEQQPENQAQAQLASLCSVLQQALGSACESRPELRGGGDSAPTLWGPDPDQNGASRLFKRWSLPTALSPEAVA 1063
Cdd:pfam02463  460 LLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVE 539

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1064 LALQKLHQDVWKARQARDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLesELRDLHETA 1143
Cdd:pfam02463  540 NYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQL--DKATLEADE 617

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1144 ASLQSRLRQAELQKMEAQNDRELLQASKEKLSAQVEHLQACVAEAQAQADAAAVLEEDLRTARSALKLKNEELESERERA 1223
Cdd:pfam02463  618 DDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRR 697

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1224 QALQEQGELKVAQgkALQENLALLAQTLSNREREVETLQAEVQELEKQREMQKAALELLSLDLKKRSREVDLQQEQIQEL 1303
Cdd:pfam02463  698 QLEIKKKEQREKE--ELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKE 775

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1304 EQCRSVLEHLPMAVQEREQKLSVQRDQIRELENDREAQRSVLEHQLLDLEQKAQVIESQRGQIQDLKKQLGTLECLALEL 1383
Cdd:pfam02463  776 LAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEE 855

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1384 EESHHKVESQQKMI-TELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDE 1462
Cdd:pfam02463  856 LERLEEEITKEELLqELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEE 935

                          810       820       830       840       850       860       870
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720397337 1463 LQKQQEQLAQALERKGQE-LVLQKERIQVLEDQRTLQTKILEEDLEQIKHSLRERSQELASQWQLVHERAD 1532
Cdd:pfam02463  936 EPEELLLEEADEKEKEENnKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKK 1006
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 1460-1792 2.98e-06

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 52.76  E-value: 2.98e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1460 IDELQKQQEQLAQALERKGQELVLQKERIQVLEDQRTLQTKILEEDLEQIKHSLRERSQELASQWQLVHERADDgkspsk 1539
Cdd:TIGR02169  193 IDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKR------ 266

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1540 gqrgsLEHLKLILRDKEKEVE-CQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQGElr 1618
Cdd:TIGR02169  267 -----LEEIEQLLEELNKKIKdLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIE-- 339

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1619 eqVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELEV 1698
Cdd:TIGR02169  340 --ELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQR 417

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1699 EGRQVRALEEVLGDLRAESREHEKAVLALQQRCAEQAQE----------HEAEARTLQDSWLQAQATLTEQEQELAALRA 1768
Cdd:TIGR02169  418 LSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKleqlaadlskYEQELYDLKEEYDRVEKELSKLQRELAEAEA 497

                          330       340
                   ....*....|....*....|....
gi 1720397337 1769 ENQYSRRQEEAAVSQAEALQEALS 1792
Cdd:TIGR02169  498 QARASEERVRGGRAVEEVLKASIQ 521
mukB PRK04863
chromosome partition protein MukB;
1398-1765 4.20e-06

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 52.27  E-value: 4.20e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1398 TELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQeRDQEVTSQRQQIDELQKQQEQLAQALERk 1477
Cdd:PRK04863   289 LELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLN-LVQTALRQQEKIERYQADLEELEERLEE- 366

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1478 gQELVLQKERIQVLEDQRtlQTKILEEDLEQIKHSLRERSQEL------ASQWQLVHERADDGKSPSKGQRGSLEHLKL- 1550
Cdd:PRK04863   367 -QNEVVEEADEQQEENEA--RAEAAEEEVDELKSQLADYQQALdvqqtrAIQYQQAVQALERAKQLCGLPDLTADNAEDw 443

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1551 --ILRDKEKEVECQ----QERIQELQGHMGQLEQQLQGLHRKVGETSlllthREQETATLQQHLQEAKEQGELREQV--L 1622
Cdd:PRK04863   444 leEFQAKEQEATEEllslEQKLSVAQAAHSQFEQAYQLVRKIAGEVS-----RSEAWDVARELLRRLREQRHLAEQLqqL 518

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1623 QGQLEEAQRDLAQRdHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQ 1702
Cdd:PRK04863   519 RMRLSELEQRLRQQ-QRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQR 597

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720397337 1703 VRALEEV---LGDLRAESREHEKAVLALQQRCAEQAQ---EHEAEARTLQDSWLQAQATLTEQEQELAA 1765
Cdd:PRK04863   598 LAARAPAwlaAQDALARLREQSGEEFEDSQDVTEYMQqllERERELTVERDELAARKQALDEEIERLSQ 666
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 1080-1851 4.28e-06

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 52.26  E-value: 4.28e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1080 RDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEekskwegRQNSLESELRDLHETAASLQSRLRQAElqkmE 1159
Cdd:COG3096    280 RRELSERALELRRELFGARRQLAEEQYRLVEMARELEELSA-------RESDLEQDYQAASDHLNLVQTALRQQE----K 348

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1160 AQNDRELLQASKEKLSAQVEHLQACVAEAQAQADAAAVLEEDLRTARSALKLKNEELESERERA----QALQeqgelkvA 1235
Cdd:COG3096    349 IERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTRAiqyqQAVQ-------A 421

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1236 QGKAlQENLALLAQTLSNREREVETLQAEVQELEKQRemqkaalellsLDLKKRSREVDLQQEQIQELEQcrsVLEHLPM 1315
Cdd:COG3096    422 LEKA-RALCGLPDLTPENAEDYLAAFRAKEQQATEEV-----------LELEQKLSVADAARRQFEKAYE---LVCKIAG 486

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1316 AVqEREQKLSVQRDQIRELENDRE--AQRSVLEHQLLDLEQKAQVIESQRGQIQDLKKQLGTLECLALELEESHHKVESQ 1393
Cdd:COG3096    487 EV-ERSQAWQTARELLRRYRSQQAlaQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQ 565

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1394 QKMITELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQER---DQEVTSQRQQIDELQKQQEQL 1470
Cdd:COG3096    566 LEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALERLREQSGEAladSQEVTAAMQQLLEREREATVE 645

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1471 AQALERKGQELVLQKERIQVL---EDQRTLQTK---------------------------------ILEEDLEQIKHSLR 1514
Cdd:COG3096    646 RDELAARKQALESQIERLSQPggaEDPRLLALAerlggvllseiyddvtledapyfsalygparhaIVVPDLSAVKEQLA 725

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1515 ER-----------------------SQELA-------SQWQLVHERADdgKSPSKGQRGSLEHLKLILRDKEKEVE---- 1560
Cdd:COG3096    726 GLedcpedlyliegdpdsfddsvfdAEELEdavvvklSDRQWRYSRFP--EVPLFGRAAREKRLEELRAERDELAEqyak 803

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1561 --CQQERIQELQGHMGQL-------------EQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQGELREQVLQGQ 1625
Cdd:COG3096    804 asFDVQKLQRLHQAFSQFvgghlavafapdpEAELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNKLLPQA 883

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1626 LEEAQRDLAQRdheLETLRQEKQQTQDQEESMKLKTSALqAALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQVRA 1705
Cdd:COG3096    884 NLLADETLADR---LEELREELDAAQEAQAFIQQHGKAL-AQLEPLVAVLQSDPEQFEQLQADYLQAKEQQRRLKQQIFA 959

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1706 LEEVLGDLRAESREHEKAVL----ALQQRCAEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQYSRRQEEAAV 1781
Cdd:COG3096    960 LSEVVQRRPHFSYEDAVGLLgensDLNEKLRARLEQAEEARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELE 1039

                          810       820       830       840       850       860       870
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720397337 1782 SQAEAL-----QEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLEEALR-IREGEIQAQA 1851
Cdd:COG3096   1040 QELEELgvqadAEAEERARIRRDELHEELSQNRSRRSQLEKQLTRCEAEMDSLQKRLRKAERDYKqEREQVVQAKA 1115
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1066-1699 4.86e-06

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 52.22  E-value: 4.86e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1066 LQKLHQDVWKARQARDDLR------DQVQKLVQRLTDTEAQKSQVhsELQDLQRQLSQSQEEKSKWEGRQNSLESELRDL 1139
Cdd:COG4913    237 LERAHEALEDAREQIELLEpirelaERYAAARERLAELEYLRAAL--RLWFAQRRLELLEAELEELRAELARLEAELERL 314

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1140 HETAASLQSRLRQAELQKMEAQNDRellqasKEKLSAQVEHLQAcvaEAQAQADAAAVLEEDLRTARSALKLKNEELESE 1219
Cdd:COG4913    315 EARLDALREELDELEAQIRGNGGDR------LEQLEREIERLER---ELEERERRRARLEALLAALGLPLPASAEEFAAL 385

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1220 RERAQALQEQGElkvAQGKALQENLALLAQTLSNREREVETLQAEVQELEKQR----EMQKAALELLSLDLKKRSRE--- 1292
Cdd:COG4913    386 RAEAAALLEALE---EELEALEEALAEAEAALRDLRRELRELEAEIASLERRKsnipARLLALRDALAEALGLDEAElpf 462

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1293 ----VDLQQEQIQELEQCRSVL-----------EHLPMA---VQEREQKLSVQRDQIREleNDREAQRSVLEHQLLdleq 1354
Cdd:COG4913    463 vgelIEVRPEEERWRGAIERVLggfaltllvppEHYAAAlrwVNRLHLRGRLVYERVRT--GLPDPERPRLDPDSL---- 536

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1355 kAQVIESQRGQIQD-LKKQLGtleclaleLEESHHKVESQQkmitelegqremqrvalthlTLDLEERSQELQAQSSQLH 1433
Cdd:COG4913    537 -AGKLDFKPHPFRAwLEAELG--------RRFDYVCVDSPE--------------------ELRRHPRAITRAGQVKGNG 587

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1434 ELENHSTHlaKELQERDQEVTSQRQQIDELQKQQEQLAQALERKGQELVLQKERIQVLEDQRTLQTKILEEDLEQIKhsL 1513
Cdd:COG4913    588 TRHEKDDR--RRIRSRYVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEID--V 663

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1514 RERSQELAsQWQLVHERADDGKSpskgqrgSLEHLKLILRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLL 1593
Cdd:COG4913    664 ASAEREIA-ELEAELERLDASSD-------DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDR 735

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1594 LTHREQE-----TATLQQHLQEAKEQGELRE--QVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEesmklkTSALQA 1666
Cdd:COG4913    736 LEAAEDLarlelRALLEERFAAALGDAVERElrENLEERIDALRARLNRAEEELERAMRAFNREWPAE------TADLDA 809

                          650       660       670
                   ....*....|....*....|....*....|....*..
gi 1720397337 1667 ALEQAHATLKERQG----ELEEHREQVRRLQEELEVE 1699
Cdd:COG4913    810 DLESLPEYLALLDRleedGLPEYEERFKELLNENSIE 846
mukB PRK04863
chromosome partition protein MukB;
1110-1924 5.99e-06

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 51.88  E-value: 5.99e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1110 DLQRQLSQSQEEKSKWEGRQNSLESELRDLHETAASLQSRLRQAE--LQKMEA----QNDRELLQASKEKLSAQVEHLQA 1183
Cdd:PRK04863   290 ELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASdhLNLVQTalrqQEKIERYQADLEELEERLEEQNE 369

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1184 CVAeaqaqadaaavlEEDLRTARSALKLKNEELESERERAQALQEQGELKVAQGKALQENLALLA-----QTLSNREREV 1258
Cdd:PRK04863   370 VVE------------EADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQAlerakQLCGLPDLTA 437

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1259 ETLQAEVQELekQREMQKAALELLSLDLKKRSREVDLQQEQIQELEQCRSVLEhlpmavQEREQKLSVQRDQIRELENDR 1338
Cdd:PRK04863   438 DNAEDWLEEF--QAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGE------VSRSEAWDVARELLRRLREQR 509

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1339 --EAQRSVLEHQLLDLEQKAQVIESQRGQIQDLKKQLGTLECLALELEESHHKVESQQKMITELEGQREMQRVALTHLTL 1416
Cdd:PRK04863   510 hlAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLE 589

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1417 DLEERSQELQAQSSQLHELENHSTHlakeLQERDQEVTSQRQQIDELQKQQeqlaqaLERkgqELVLQKERIQVLEDQRT 1496
Cdd:PRK04863   590 QLQARIQRLAARAPAWLAAQDALAR----LREQSGEEFEDSQDVTEYMQQL------LER---ERELTVERDELAARKQA 656

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1497 LQTKIleEDLEQIKHSLRERSQELASQW--QLVHERADD---GKSPSKGQR-GSLEHlkLILRDKEKEVECQQERIQELQ 1570
Cdd:PRK04863   657 LDEEI--ERLSQPGGSEDPRLNALAERFggVLLSEIYDDvslEDAPYFSALyGPARH--AIVVPDLSDAAEQLAGLEDCP 732

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1571 GHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQ----QHLQEAKEQGELREQVLqgQLEEAQRDLAQRDHELETLRQE 1646
Cdd:PRK04863   733 EDLYLIEGDPDSFDDSVFSVEELEKAVVVKIADRQwrysRFPEVPLFGRAAREKRI--EQLRAEREELAERYATLSFDVQ 810

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1647 KQQTQDQEESMKLKTSAL-------QAALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLGDLRAESRE 1719
Cdd:PRK04863   811 KLQRLHQAFSRFIGSHLAvafeadpEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADE 890

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1720 HekavlaLQQRCAEqAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQySRRQEEAAVSQAEALQEALSKAQAALQ 1799
Cdd:PRK04863   891 T------LADRVEE-IREQLDEAEEAKRFVQQHGNALAQLEPIVSVLQSDPE-QFEQLKQDYQQAQQTQRDAKQQAFALT 962

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1800 EKEQSLLEQA-ELSHTLEASTAALQATLDTCQASARQLEEALRIREGEIQAQALQHHEVTQHLQQELCQKKEELRQLlek 1878
Cdd:PRK04863   963 EVVQRRAHFSyEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQEL--- 1039

                          810       820       830       840
                   ....*....|....*....|....*....|....*....|....*.
gi 1720397337 1879 agARRSQENGIQEKQSLEQERQEETRRLLESLKELQLTVAQREEEI 1924
Cdd:PRK04863  1040 --KQELQDLGVPADSGAEERARARRDELHARLSANRSRRNQLEKQL 1083
mukB PRK04863
chromosome partition protein MukB;
466-1026 6.24e-06

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 51.88  E-value: 6.24e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  466 AEQLrSALQVDLAEAERRRE---ALWEKKTQLETQLQKAEEAGAELQAELRGTREEKEELKDKLSEAHHQQETATAHLEQ 542
Cdd:PRK04863   512 AEQL-QQLRMRLSELEQRLRqqqRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQ 590

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  543 LHQDAERQEETLARAVQEKEALVRERAALEVRL---QAVERDRQDLTEHVLGLRSAKEQLESNLFEAQQQNSVIQVTKGQ 619
Cdd:PRK04863   591 LQARIQRLAARAPAWLAAQDALARLREQSGEEFedsQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLSQPGGS 670

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  620 LEVQIQTIIQ----------------------------------------AKEVIQGEVKCLKL---------ELDAERT 650
Cdd:PRK04863   671 EDPRLNALAErfggvllseiyddvsledapyfsalygparhaivvpdlsdAAEQLAGLEDCPEDlyliegdpdSFDDSVF 750

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  651 RAEQEWDAVARQLAQAEQE----------GQASLERQKVAHEEEVNRLQEKWEKeRSWLQQELDKTLETLER-------- 712
Cdd:PRK04863   751 SVEELEKAVVVKIADRQWRysrfpevplfGRAAREKRIEQLRAEREELAERYAT-LSFDVQKLQRLHQAFSRfigshlav 829

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  713 --------ERAELETKLREQQTEMEAIRAQREEERSQADSAlyqmqleteKERVSLLETLLRTQKELADAS--QQLERLR 782
Cdd:PRK04863   830 afeadpeaELRQLNRRRVELERALADHESQEQQQRSQLEQA---------KEGLSALNRLLPRLNLLADETlaDRVEEIR 900

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  783 QDMKIQKLKEQ--ETTGMLQAQLQETQQELKEAAQQH---RDDLAAFQKDKLDLQKQVEDLMS--QLVAH---DDSQRLV 852
Cdd:PRK04863   901 EQLDEAEEAKRfvQQHGNALAQLEPIVSVLQSDPEQFeqlKQDYQQAQQTQRDAKQQAFALTEvvQRRAHfsyEDAAEML 980

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  853 KEE------IEEKVKVA-QECSRIQKELEKENASLAlslvEKEKRLLILQEADSVRQQELSSLRQDIQeaqegqrELGVQ 925
Cdd:PRK04863   981 AKNsdlnekLRQRLEQAeQERTRAREQLRQAQAQLA----QYNQVLASLKSSYDAKRQMLQELKQELQ-------DLGVP 1049

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  926 VEllrqevKEKEADFVAREAQLLEELEASRVAEQQLRASLWAQEAKATQLQLQLRSTESQLealvaeQQPENQAQAQLAS 1005
Cdd:PRK04863  1050 AD------SGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDY------HEMREQVVNAKAG 1117

                          650       660
                   ....*....|....*....|.
gi 1720397337 1006 LCSVLQQALGSACESRPELRG 1026
Cdd:PRK04863  1118 WCAVLRLVKDNGVERRLHRRE 1138
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 615-964 6.39e-06

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 51.66  E-value: 6.39e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  615 VTKGQLEVQIQTIIQAKEVIQGEVKCLKLE-LDAERTRAEQEWDAVA----RQLAQAEQEGQASLERQKVAHEEEVNRLQ 689
Cdd:pfam17380  265 MTENEFLNQLLHIVQHQKAVSERQQQEKFEkMEQERLRQEKEEKAREverrRKLEEAEKARQAEMDRQAAIYAEQERMAM 344

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  690 EKWEKERSWLQQELDKTLETLERERAELETKLREQQTEMEAIRAQREEE-RSQADSALYQMQLETEKERvslleTLLRTQ 768
Cdd:pfam17380  345 ERERELERIRQEERKRELERIRQEEIAMEISRMRELERLQMERQQKNERvRQELEAARKVKILEEERQR-----KIQQQK 419

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  769 KELADASQQLERLRQDmKIQKLKEQETTGMLQAQLQEtqQELKEAAQQHRDDLAAFQKDKLDLQKQVEDlmsQLVAHDDS 848
Cdd:pfam17380  420 VEMEQIRAEQEEARQR-EVRRLEEERAREMERVRLEE--QERQQQVERLRQQEEERKRKKLELEKEKRD---RKRAEEQR 493

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  849 QRLVKEEIEEKVKVAQECSRIQKELEKENASLALSLVEKEKRllilQEADSVRQQElsslrqdiQEAQEGQRelgVQVEL 928
Cdd:pfam17380  494 RKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERR----REAEEERRKQ--------QEMEERRR---IQEQM 558

                          330       340       350
                   ....*....|....*....|....*....|....*.
gi 1720397337  929 LRQEVKEKEADFVAREAQLLEELEASRVAEQQLRAS 964
Cdd:pfam17380  559 RKATEERSRLEAMEREREMMRQIVESEKARAEYEAT 594
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 477-832 8.61e-06

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 51.49  E-value: 8.61e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  477 LAEAERRREALwEKKTQLETQLQKAEEAGAELQAELRGTREEKEELKDKLSEAHHQQETATAHLeQLHQDAERQEETLAR 556
Cdd:COG3096    274 MRHANERRELS-ERALELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASDHL-NLVQTALRQQEKIER 351

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  557 AVQEKEAL-VRERAALEVRLQAVERdRQDLTEHVLGLRSAKEQLESNLFEAQQQNSVIQVTKGQLEVQIQTIIQAKEVIQ 635
Cdd:COG3096    352 YQEDLEELtERLEEQEEVVEEAAEQ-LAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTRAIQYQQAVQALEKARALCG 430

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  636 G---EVKCLKLELDAERTRaEQEWDAVARQLAQAEQEGQASLERQKVAHE------EEVNRlQEKWEKERSWL-----QQ 701
Cdd:COG3096    431 LpdlTPENAEDYLAAFRAK-EQQATEEVLELEQKLSVADAARRQFEKAYElvckiaGEVER-SQAWQTARELLrryrsQQ 508

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  702 ELDKTLETLERERAELETKLREQQ--TEMEAIRAQREEERSQADSALYQMQLETEKERVSLLETLLRTQKELADASQQLE 779
Cdd:COG3096    509 ALAQRLQQLRAQLAELEQRLRQQQnaERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLE 588

                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720397337  780 RLRQDMK---------------IQKLKEQ-----ETTGMLQAQLQETQQELKEaAQQHRDDLAAfQKDKLDLQ 832
Cdd:COG3096    589 QLRARIKelaarapawlaaqdaLERLREQsgealADSQEVTAAMQQLLERERE-ATVERDELAA-RKQALESQ 659
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
80-609 8.69e-06

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 51.07  E-value: 8.69e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337   80 HGDLEKAELQDRvtelsaLLTQSQKQNEDYEKMVKALRETMEILETNHAELMEHEASLSRNAQEEklsLQQVIKAITQAL 159
Cdd:COG4913    241 HEALEDAREQIE------LLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEE---LRAELARLEAEL 311

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  160 ASVEEEdtVTQSSGHEDSLQSDCNGLSQFDPQDPDRALTLVQSVLTRRQQAVQDLRQQLSGCQEAM----SFLQQQHDQW 235
Cdd:COG4913    312 ERLEAR--LDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLpasaEEFAALRAEA 389

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  236 EEEGRALREKLQKLTGERDALAGQTVGLQGEVDSLTGERDALAGQTVDLQGEVDSLsreRELLQKARGELQQQLEVL--- 312
Cdd:COG4913    390 AALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLAL---RDALAEALGLDEAELPFVgel 466

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  313 -----EQEAWrlrRMNMELQLQG--------DSAQGEKLEQQEELHLAVR---ERERLQETLVGLEAKQSESLSELLTLR 376
Cdd:COG4913    467 ievrpEEERW---RGAIERVLGGfaltllvpPEHYAAALRWVNRLHLRGRlvyERVRTGLPDPERPRLDPDSLAGKLDFK 543

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  377 EALESSRLEGELLKQ---ERVEVAAALARAEQSI-----VELSGSENSLKAEVADLRA------AAVKLGALNE---ALA 439
Cdd:COG4913    544 PHPFRAWLEAELGRRfdyVCVDSPEELRRHPRAItragqVKGNGTRHEKDDRRRIRSRyvlgfdNRAKLAALEAelaELE 623

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  440 LDKVELNQQLLQLEQENQSLCSRVEAAEQLR--SALQVDLAEAERRREALWEKKTQLET---QLQKAEEAGAELQAELRG 514
Cdd:COG4913    624 EELAEAEERLEALEAELDALQERREALQRLAeySWDEIDVASAEREIAELEAELERLDAssdDLAALEEQLEELEAELEE 703

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  515 TREEKEELKDKLSEAHHQQETATAHLEQLhqdAERQEETLARAVQEKEALVRERAALEVRLQAVERDRQDLTEHVLGLRS 594
Cdd:COG4913    704 LEEELDELKGEIGRLEKELEQAEEELDEL---QDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRA 780

                          570
                   ....*....|....*
gi 1720397337  595 AKEQLESNLFEAQQQ 609
Cdd:COG4913    781 RLNRAEEELERAMRA 795
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 461-680 8.99e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 50.53  E-value: 8.99e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  461 SRVEAAEQLRSALQVDLAEAERRREALWEKKTQLETQLQKAEEAGAELQAELRGTREEKEELKDKLSEAHHQQETATAHL 540
Cdd:COG4942     20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  541 EQLHQDAERQEETLARAVQEKEALV----RERAALEVRLQAVERDRQDLTEHVLGLRSAKEQLESNLFEAQQQNSVIQVT 616
Cdd:COG4942    100 EAQKEELAELLRALYRLGRQPPLALllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720397337  617 KGQLEVQIQTIIQAKEVIQGEVKCLKLELDAERTRAE---QEWDAVARQLAQAEQEGQASLERQKVA 680
Cdd:COG4942    180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAelqQEAEELEALIARLEAEAAAAAERTPAA 246
Cast pfam10174
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ...
 1389-1696 9.06e-06

RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.


Pssm-ID: 431111 [Multi-domain]  Cd Length: 766  Bit Score: 50.98  E-value: 9.06e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1389 KVESQQKMITELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQE 1468
Cdd:pfam10174  241 KISSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESELLALQTKLETLTNQNS 320

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1469 QLAQALERKGQELVLQKERiqvledqrtlqTKILEEDLEQIKHSLRERSQELASQWQLVHERADDgkspSKGQRGSLEHL 1548
Cdd:pfam10174  321 DCKQHIEVLKESLTAKEQR-----------AAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEE----KSTLAGEIRDL 385

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1549 KLILRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEA-------KEQGELREQV 1621
Cdd:pfam10174  386 KDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEALSEKeriierlKEQREREDRE 465

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720397337 1622 LQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEEL 1696
Cdd:pfam10174  466 RLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQL 540
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
1610-2122 9.30e-06

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 51.19  E-value: 9.30e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1610 EAKEQGELREQvlqgqLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSA----------LQAALEQAHATLKERQ 1679
Cdd:PRK02224   197 EEKEEKDLHER-----LNGLESELAELDEEIERYEEQREQARETRDEADEVLEEheerreeletLEAEIEDLRETIAETE 271

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1680 GELEEHREQVRRLQEEL-EVEGRQVRALEEV-LGDLRAESREHEKAVLALQ--------QRCAEQAQEHEAEARTLQDSW 1749
Cdd:PRK02224   272 REREELAEEVRDLRERLeELEEERDDLLAEAgLDDADAEAVEARREELEDRdeelrdrlEECRVAAQAHNEEAESLREDA 351

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1750 LQAQATLTEQEQELAALRAENQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTC 1829
Cdd:PRK02224   352 DDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAEL 431

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1830 QASARQLEEalRIREGEIQAQALQHHEVTQHLQ--------QELCQKKEELRQLLEKAGARRSQENGIQEKQSLEQERQE 1901
Cdd:PRK02224   432 EATLRTARE--RVEEAEALLEAGKCPECGQPVEgsphvetiEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAED 509

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1902 ETRRLLESLKELQLTVAQREEEILMLRE-ASSPRHRAlpaekpalQPLPAQQELERLQTALRQTEAREIewREKAQDLAL 1980
Cdd:PRK02224   510 RIERLEERREDLEELIAERRETIEEKRErAEELRERA--------AELEAEAEEKREAAAEAEEEAEEA--REEVAELNS 579

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1981 SLAQSKASISSLQEITMfLQASVLERESEQQRLQEELVlSRQALEEQQSggPHSTSRADQGPKVGQGSQSGEVETepspG 2060
Cdd:PRK02224   580 KLAELKERIESLERIRT-LLAAIADAEDEIERLREKRE-ALAELNDERR--ERLAEKRERKRELEAEFDEARIEE----A 651

                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720397337 2061 VEEKERLTQRLERLQQAVAELEVDRSKLQCHNAQLRTALEQVERERRKLKRDSVRASRAGSL 2122
Cdd:PRK02224   652 REDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRVEALEAL 713
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 1419-2112 1.14e-05

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 50.84  E-value: 1.14e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1419 EERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERKGQELVlqkERIQVLEDQRTLQ 1498
Cdd:TIGR02169  205 REREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLE---EIEQLLEELNKKI 281

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1499 TKILEEDLEQIKHSLRERSQELASQwqlvheraddgkspskgqRGSLEHLKLILRDKEKEVECQQERIQELQGHMGQLEQ 1578
Cdd:TIGR02169  282 KDLGEEEQLRVKEKIGELEAEIASL------------------ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELER 343

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1579 QLQGLHRKVGETSLLLTHREQETATLQQHLQE-AKEQGELREQV--LQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEE 1655
Cdd:TIGR02169  344 EIEEERKRRDKLTEEYAELKEELEDLRAELEEvDKEFAETRDELkdYREKLEKLKREINELKRELDRLQEELQRLSEELA 423

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1656 SMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLGDL--RAESREHEKAVLALQQRCAE 1733
Cdd:TIGR02169  424 DLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVekELSKLQRELAEAEAQARASE 503

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1734 QAQEHEAEARTLQDSWLQAQATLTEQeqelaALRAENQYSRRQEEAAVSQAEALQ-EALSKAQAALQekeqsLLEQAELS 1812
Cdd:TIGR02169  504 ERVRGGRAVEEVLKASIQGVHGTVAQ-----LGSVGERYATAIEVAAGNRLNNVVvEDDAVAKEAIE-----LLKRRKAG 573

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1813 HTLEASTAALQATLDTCQASARQ--LEEALRIREGEIQAQALQHHEVTQHLQQELCQKKEELR----------QLLEKAG 1880
Cdd:TIGR02169  574 RATFLPLNKMRDERRDLSILSEDgvIGFAVDLVEFDPKYEPAFKYVFGDTLVVEDIEAARRLMgkyrmvtlegELFEKSG 653

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1881 A--------RRSQENGIQEKQSLEQ--ERQEETRRLLESLKELQLTVAQREEEILMLREASSPRHRALPAEKPALQPLPA 1950
Cdd:TIGR02169  654 AmtggsrapRGGILFSRSEPAELQRlrERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEE 733

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1951 Q--QELERLQTALRQTEAREIEWREKAQDLALSLAQSKASISSLQEITMFLQASVL-----ERESEQQRLQEELVLSRQA 2023
Cdd:TIGR02169  734 KlkERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLShsripEIQAELSKLEEEVSRIEAR 813

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 2024 LEEQQSGGPHSTSRADQGPKVGQGSQSGEVETEpspgvEEKERLTQRLERLQQAVAELEVDRSKLQCHNAQLRTALEQVE 2103
Cdd:TIGR02169  814 LREIEQKLNRLTLEKEYLEKEIQELQEQRIDLK-----EQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLK 888


                   ....*....
gi 1720397337 2104 RERRKLKRD 2112
Cdd:TIGR02169  889 KERDELEAQ 897
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1686-1965 1.16e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 50.68  E-value: 1.16e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1686 REQVRRLQEELEVEGRQVRALEEVLGDLRAESREHEKAVLALQQRcaeqaqeheAEARTLQDSWLQAQATLTEQEQELAA 1765
Cdd:COG4913    609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRL---------AEYSWDEIDVASAEREIAELEAELER 679

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1766 LRAENQYSRRQEEaAVSQAEALQEALSKAQAALQEKEQSL-LEQAELSHTLEASTAALQATLDTCQASARQLEEALRIRE 1844
Cdd:COG4913    680 LDASSDDLAALEE-QLEELEAELEELEEELDELKGEIGRLeKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAA 758

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1845 GEIQAQALQHHEVTQHLQQELCQKKEELRQLLEKAGARRSQENGIQEKQSLEQERQEETRRLLESLKELQLtvAQREEEI 1924
Cdd:COG4913    759 LGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYLALLDRLEEDGL--PEYEERF 836

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|.
gi 1720397337 1925 LMLREASSPRHRALPAEKPALQPLPAQQELERLQTALRQTE 1965
Cdd:COG4913    837 KELLNENSIEFVADLLSKLRRAIREIKERIDPLNDSLKRIP 877
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
750-1280 1.16e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 50.68  E-value: 1.16e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  750 QLETEKERVSLLETLLRTQKELADASQQLERLRQDMKIQKLKEQETTgmlQAQLQETQQELKEAAQQHRDDLAAFQKDKL 829
Cdd:COG4913    243 ALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRR---LELLEAELEELRAELARLEAELERLEARLD 319

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  830 DLQKQVEDLMSQLVAHDDSQR-LVKEEIEEKVKVAQECSRIQKELEKENASLALSLVEKEKRLLILQEADSVRQQELSSL 908
Cdd:COG4913    320 ALREELDELEAQIRGNGGDRLeQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEE 399

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  909 RQDIQEAQegqRELGVQVELLRQEVKEKEADFV----------AREAQLLEEL-EASRVAEQQLR-----------ASLW 966
Cdd:COG4913    400 LEALEEAL---AEAEAALRDLRRELRELEAEIAslerrksnipARLLALRDALaEALGLDEAELPfvgelievrpeEERW 476

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  967 -------------------AQEAKAT----QLQLQLRSTESQLEALVAEQQPENQAQAQLASLCSV--------LQQALG 1015
Cdd:COG4913    477 rgaiervlggfaltllvppEHYAAALrwvnRLHLRGRLVYERVRTGLPDPERPRLDPDSLAGKLDFkphpfrawLEAELG 556

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1016 SA-----CESRPELRGGGDS---------APTLWgpdpDQNGASRLFKRWSLptalspeavalalqklhqdVWKARQARD 1081
Cdd:COG4913    557 RRfdyvcVDSPEELRRHPRAitragqvkgNGTRH----EKDDRRRIRSRYVL-------------------GFDNRAKLA 613

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1082 DLRDQVQKLVQRLTDTEAQksqvhseLQDLQRQLSQSQEEKSKWEGRQNSLESELRdlhetAASLQSRLRQAELQKMEAQ 1161
Cdd:COG4913    614 ALEAELAELEEELAEAEER-------LEALEAELDALQERREALQRLAEYSWDEID-----VASAEREIAELEAELERLD 681

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1162 NDRELLQASKEKLSAQVEHLQACVAEAqaqadaaavleEDLRTARSALKLKNEELESERERAQALQEQGELKVAQGKALQ 1241
Cdd:COG4913    682 ASSDDLAALEEQLEELEAELEELEEEL-----------DELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAL 750

                          570       580       590       600
                   ....*....|....*....|....*....|....*....|
gi 1720397337 1242 ENLALLAQTLSNREREV-ETLQAEVQELEKQREMQKAALE 1280
Cdd:COG4913    751 LEERFAAALGDAVERELrENLEERIDALRARLNRAEEELE 790
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1591-1810 1.39e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 49.76  E-value: 1.39e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1591 SLLLTHREQETATLQQHLQEAKEQGELREQVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQ 1670
Cdd:COG4942      8 ALLLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAE 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1671 AHATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLGDLRAESREHEKAVLALQQRCAEQAQEHEAEARTLQdswl 1750
Cdd:COG4942     88 LEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELA---- 163

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1751 QAQATLTEQEQELAALRAENQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQSLLEQAE 1810
Cdd:COG4942    164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAE 223
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
568-1006 1.48e-05

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 50.15  E-value: 1.48e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  568 RAALEVRLQAVERDRQDLTEHVLGLRSAKEQLESNLFEAQQQNSVIQVTKGQLEVQIQTIIQAKEVIQGEVKCLK----- 642
Cdd:COG4717     48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEkllql 127

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  643 LELDAERTRAEQEWDAVARQLAQAEQEGQ--ASLERQKVAHEEEVNRLQEKWEKERSWLQQELDKTLETLERERAELETK 720
Cdd:COG4717    128 LPLYQELEALEAELAELPERLEELEERLEelRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQR 207

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  721 LREQQTEMEAIRAQREEERSQADSALYQMQLETEKERVSLLETLLRTQKELADASQQLERLRQDMKIQKLKEQETTGMLQ 800
Cdd:COG4717    208 LAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLA 287

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  801 AQLQETQQELKEAAQQHRDDLAAFQKDKLdlqkQVEDLMSQLVAHDDSQRLVKEEIEEKVKVAQECSRIQKELEKENASL 880
Cdd:COG4717    288 LLFLLLAREKASLGKEAEELQALPALEEL----EEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEEL 363

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  881 ALSLVEKEKRLLiLQEADSVRQQELSSLRQDIQEAQEGQRELGVQVELLRQEVKEKEADFVAR-EAQLLEELEASRVAEQ 959
Cdd:COG4717    364 QLEELEQEIAAL-LAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALdEEELEEELEELEEELE 442

                          410       420       430       440
                   ....*....|....*....|....*....|....*....|....*..
gi 1720397337  960 QLRASLWAQEAKATQLQLQLRSTESQLEALVAEQQpENQAQAQLASL 1006
Cdd:COG4717    443 ELEEELEELREELAELEAELEQLEEDGELAELLQE-LEELKAELREL 488
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 766-1005 2.62e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 48.99  E-value: 2.62e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  766 RTQKELADASQQLERLRQDMKIQKLKEQEttgmLQAQLQETQQELKEAAQQhrddLAAFQKDKLDLQKQVEDLMSQLVAH 845
Cdd:COG4942     24 EAEAELEQLQQEIAELEKELAALKKEEKA----LLKQLAALERRIAALARR----IRALEQELAALEAELAELEKEIAEL 95

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  846 DDSQRLVKEEIEEKVKVAQECSRIQKELEKENASlalSLVEKEKRLLILQEADSVRQQELSSLRQDIQEAQEGQRELGVQ 925
Cdd:COG4942     96 RAELEAQKEELAELLRALYRLGRQPPLALLLSPE---DFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAE 172

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  926 VELLRQEVKEKEadfvareaQLLEELEASRVAEQQLRASLWAQEAKATQLQLQLRSTESQLEALVAEQQPENQAQAQLAS 1005
Cdd:COG4942    173 RAELEALLAELE--------EERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
ClpA COG0542
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ...
 644-766 2.78e-05

ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440308 [Multi-domain]  Cd Length: 836  Bit Score: 49.31  E-value: 2.78e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  644 ELDAERTRAEQEWDAVARQLAQAEQEGQASLERQKVAHEEEVNRLQEKWEKERSWLQ--QELDKTLETLERERAELETKL 721
Cdd:COG0542    415 ELERRLEQLEIEKEALKKEQDEASFERLAELRDELAELEEELEALKARWEAEKELIEeiQELKEELEQRYGKIPELEKEL 494

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1720397337  722 REQQTEMEAIRAQREEERSQADSA----------LYQMqLETEKERVSLLETLLR 766
Cdd:COG0542    495 AELEEELAELAPLLREEVTEEDIAevvsrwtgipVGKL-LEGEREKLLNLEEELH 548
TPH pfam13868
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ...
 675-963 2.78e-05

Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.


Pssm-ID: 464007 [Multi-domain]  Cd Length: 341  Bit Score: 48.76  E-value: 2.78e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  675 ERQKVAHEEEVNRLQEKWEKERSWLQQELDKTLETLERERAELETKLREQQTEMEAIRAQREE----ERSQADSALYQMQ 750
Cdd:pfam13868   32 KRIKAEEKEEERRLDEMMEEERERALEEEEEKEEERKEERKRYRQELEEQIEEREQKRQEEYEeklqEREQMDEIVERIQ 111

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  751 LETEKERVSLLETLLRTQKELADASQQLERLRQDMKIQKLKE-------QETTGMLQAQLQETQQELKEAAQQHRDDLAA 823
Cdd:pfam13868  112 EEDQAEAEEKLEKQRQLREEIDEFNEEQAEWKELEKEEEREEderileyLKEKAEREEEREAEREEIEEEKEREIARLRA 191

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  824 FQKDKLDLQKQVEDLMSQLVAHDDSQRLVKEEIEEKVKVAQECSRIQKELEKENASLALSLVEKEKRLliLQEADSVRQQ 903
Cdd:pfam13868  192 QQEKAQDEKAERDELRAKLYQEEQERKERQKEREEAEKKARQRQELQQAREEQIELKERRLAEEAERE--EEEFERMLRK 269

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  904 ELSSLRQDIQEAQEGQRELGVQVELLRQEVKEKEADFVAREAQLLEELEASRVAEQQLRA 963
Cdd:pfam13868  270 QAEDEEIEQEEAEKRRMKRLEHRRELEKQIEEREEQRAAEREEELEEGERLREEEAERRE 329
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
 463-935 3.12e-05

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 49.33  E-value: 3.12e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  463 VEAAEQLRSALQVDLAEAERRREALWEKKTQLETQLQKAEEAGAELQAELRGTREEKEelkDKLSEAHHQQETATAHLEQ 542
Cdd:pfam05483  196 ILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKE---NKMKDLTFLLEESRDKANQ 272

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  543 LHQDAERQEETLARAVQEKEALVRERAALEVRLQ-------AVERDRQDLTEHVLGLRSAKEQLESNLFEAQQQNSVI-- 613
Cdd:pfam05483  273 LEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQrsmstqkALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVvt 352

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  614 --QVTKGQLEVQIQTIIQAKEVIQGEVKCLKLELDAERTRAEQEWDAVARQLAQAEQEGQASLERQKVAHEeevNRLQEK 691
Cdd:pfam05483  353 efEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDE---KKQFEK 429

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  692 WEKERSWLQQELDKTLETLERERAELETKLREQQTEMEAIRAQREEERSQADSALYQMQLETEKERVSLLETLLRTQkEL 771
Cdd:pfam05483  430 IAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQ-EA 508

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  772 ADASQQLERLRQDMKIQKLKE----------QETTGMLQAQLQETQQELKEAAQQHRDDLAAFQKDKLDLQKQVEDLMSQ 841
Cdd:pfam05483  509 SDMTLELKKHQEDIINCKKQEermlkqienlEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQ 588

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  842 LVAHDDSQRLVKEEIEEKVKVAQECSRIQKELEK----ENASLALSLVEKEKRLLILQEADSVRQQELSSLRQDIQEAQE 917
Cdd:pfam05483  589 MKILENKCNNLKKQIENKNKNIEELHQENKALKKkgsaENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKI 668

                          490
                   ....*....|....*...
gi 1720397337  918 GQRELGVQVELLRQEVKE 935
Cdd:pfam05483  669 SEEKLLEEVEKAKAIADE 686
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 1254-1924 3.36e-05

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 49.30  E-value: 3.36e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1254 REREVETLQAEV-QELEKQREMQKAALELLSLDLKKRSREVDLQQEQIQELEQCRSVLEHLPMAVQEREQKLSVQRDQIR 1332
Cdd:TIGR02169  185 NIERLDLIIDEKrQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELE 264

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1333 ELENDREAQRSVLEHQLLDLEQKAQV------------IESQRGQIQDLKKQLGTLECLALELEESHHKVESQqkmITEL 1400
Cdd:TIGR02169  265 KRLEEIEQLLEELNKKIKDLGEEEQLrvkekigeleaeIASLERSIAEKERELEDAEERLAKLEAEIDKLLAE---IEEL 341

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1401 EGQREMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERKGQE 1480
Cdd:TIGR02169  342 EREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEE 421

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1481 LVLQKERIQVLEDQRTLQTKILEEDLEQIKHSLRERSQeLASQWQLVHERADDGKSPSKGQRGSLEHLKLILRDKEKEVE 1560
Cdd:TIGR02169  422 LADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQ-LAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQAR 500

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1561 CQQERIQELQGHMGQLEQQLQGLH---------------------------------------------RKVGETSLLLT 1595
Cdd:TIGR02169  501 ASEERVRGGRAVEEVLKASIQGVHgtvaqlgsvgeryataievaagnrlnnvvveddavakeaiellkrRKAGRATFLPL 580

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1596 HREQETATLQQHLQEAKEQGE------------------LREQVLQGQLEEAQR-------------------------- 1631
Cdd:TIGR02169  581 NKMRDERRDLSILSEDGVIGFavdlvefdpkyepafkyvFGDTLVVEDIEAARRlmgkyrmvtlegelfeksgamtggsr 660

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1632 --------------DLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELE 1697
Cdd:TIGR02169  661 aprggilfsrsepaELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLE 740

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1698 VEGRQVRALEEVLGDLRAESREHEKAVLALQQRCAE-QAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQYSRRQ 1776
Cdd:TIGR02169  741 ELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKlEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQK 820

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1777 EEAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLEEALRIREGEI---QAQALQ 1853
Cdd:TIGR02169  821 LNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERdelEAQLRE 900

                          730       740       750       760       770       780       790
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720397337 1854 HHEVTQHLQQELCQKKEELRQLLEKAGARRSQENGIQEKQSLEQERQEETrrllESLKELQLTVAQREEEI 1924
Cdd:TIGR02169  901 LERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEE----LSLEDVQAELQRVEEEI 967
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 468-935 3.77e-05

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 48.86  E-value: 3.77e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  468 QLRSALQVDLAEAERRREALWEKKTQLETQLQKAEEAGAELQAELRGTREEKEELKDKLSEAHHQQETATAHLEQLHQDa 547
Cdd:TIGR04523  117 EQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNK- 195

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  548 ERQEETLARAVQEKEALVREraaLEVRLQAVERDRQDLTEHVLGLRSAKEQLESNLFEAQQQNSVI----QVTKGQLEVQ 623
Cdd:TIGR04523  196 LLKLELLLSNLKKKIQKNKS---LESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLkdeqNKIKKQLSEK 272

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  624 IQTIIQAKEVI---QGEVKCLKLELDAERTRAEQEWDAVARQLAQAEQEGQASLERQKVAHEEEVNRLQE---KWEKERS 697
Cdd:TIGR04523  273 QKELEQNNKKIkelEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEqisQLKKELT 352

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  698 WLQQELDKTLETLERERAELETKLREQQTEMEAIRA-------------QREEERSQADSALYQMQLET---EKERVSLL 761
Cdd:TIGR04523  353 NSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNlesqindleskiqNQEKLNQQKDEQIKKLQQEKellEKEIERLK 432

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  762 ETLLRTQKELADASQQ----------LERLRQDMKIQKLKEQETTGMLQAQLQETQQELKEAAQQhrddLAAFQKDKLDL 831
Cdd:TIGR04523  433 ETIIKNNSEIKDLTNQdsvkeliiknLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKE----LKKLNEEKKEL 508

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  832 QKQVEDLMSQLVAHDDSQRLVKEEIEEKvkvAQECSRIQKELEKENASLALSLVEKEKRLLilqeadsvrQQELSSLRQD 911
Cdd:TIGR04523  509 EEKVKDLTKKISSLKEKIEKLESEKKEK---ESKISDLEDELNKDDFELKKENLEKEIDEK---------NKEIEELKQT 576

                          490       500
                   ....*....|....*....|....
gi 1720397337  912 IQEAQEGQRELGVQVELLRQEVKE 935
Cdd:TIGR04523  577 QKSLKKKQEEKQELIDQKEKEKKD 600
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1417-1983 3.97e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 49.14  E-value: 3.97e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1417 DLEERSQELQAQSSQLHEL-ENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERKGQELVLQKERIQVLEDQR 1495
Cdd:COG4913    239 RAHEALEDAREQIELLEPIrELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARL 318

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1496 TLqtkiLEEDLEQIKHSLRErsqelasqwqlvheraddgkspSKGQRgsLEHLklilrdkEKEVECQQERIQELQGHMGQ 1575
Cdd:COG4913    319 DA----LREELDELEAQIRG----------------------NGGDR--LEQL-------EREIERLERELEERERRRAR 363

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1576 LEQQLQGLHRKVGETslllthrEQETATLQQHLQEAKEQgelreqvLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEE 1655
Cdd:COG4913    364 LEALLAALGLPLPAS-------AEEFAALRAEAAALLEA-------LEEELEALEEALAEAEAALRDLRRELRELEAEIA 429

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1656 SMKLKTSALQAALEQAHATLKErqgELEEHREQVRRLQEELEVEGRQVR---ALEEVLGDLRAE---SREHEKAVLA--- 1726
Cdd:COG4913    430 SLERRKSNIPARLLALRDALAE---ALGLDEAELPFVGELIEVRPEEERwrgAIERVLGGFALTllvPPEHYAAALRwvn 506

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1727 -------LQQRCAEQAQEHEAEARTLQDS--------------WLQAQ----------ATLTEQEQELAALRAENQYS-- 1773
Cdd:COG4913    507 rlhlrgrLVYERVRTGLPDPERPRLDPDSlagkldfkphpfraWLEAElgrrfdyvcvDSPEELRRHPRAITRAGQVKgn 586

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1774 ----------------------RRQEEAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTcqa 1831
Cdd:COG4913    587 gtrhekddrrrirsryvlgfdnRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDV--- 663

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1832 saRQLEEALRIREGEIQAQALQHHEVTQhLQQELCQKKEELRQLLEKAGARRSQENGIQEKQSLEQERQEETRRLLESLK 1911
Cdd:COG4913    664 --ASAEREIAELEAELERLDASSDDLAA-LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAE 740

                          570       580       590       600       610       620       630
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720397337 1912 ELQlTVAQREEEILMLREASSPRHRALPAEKPALQPLPAQQELERLQTALRQTEAR-EIEWREKAQDLALSLA 1983
Cdd:COG4913    741 DLA-RLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAfNREWPAETADLDADLE 812
MutS2 COG1193
dsDNA-specific endonuclease/ATPase MutS2 [Replication, recombination and repair];
672-812 5.05e-05

dsDNA-specific endonuclease/ATPase MutS2 [Replication, recombination and repair];


Pssm-ID: 440806 [Multi-domain]  Cd Length: 784  Bit Score: 48.60  E-value: 5.05e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  672 ASLERQKVAHEEEvnrlqekwekerswlqqeldktLETLERERAELETKLREQQTEMEAIRAQREEERSQADSALYQMQL 751
Cdd:COG1193    521 EELERERRELEEE----------------------REEAERLREELEKLREELEEKLEELEEEKEEILEKAREEAEEILR 578

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720397337  752 ETEKErvslLETLLRTQKELADASQQLERLRQDMK--IQKLKEQETTGMLQAQLQETQQELKE 812
Cdd:COG1193    579 EARKE----AEELIRELREAQAEEEELKEARKKLEelKQELEEKLEKPKKKAKPAKPPEELKV 637
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 465-788 5.63e-05

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 48.80  E-value: 5.63e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  465 AAEQLRSALQVDLAEAERRREALWEKKTQLETQLQKAEEAGAELQAELRGT------REEKEELKDKL-------SEAHH 531
Cdd:COG3096    296 GARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASDHLNLVQTALRQQekieryQEDLEELTERLeeqeevvEEAAE 375

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  532 QQETATAHLEQLHQDAERQEETLA-----------RAVQEKEALVRERAAlEVRLQAVERDRQDLTEHVLGLRSAKEQLE 600
Cdd:COG3096    376 QLAEAEARLEAAEEEVDSLKSQLAdyqqaldvqqtRAIQYQQAVQALEKA-RALCGLPDLTPENAEDYLAAFRAKEQQAT 454

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  601 SNLFEAQQQNSVIQVTKGQLEVQIQTIIQ-AKEVIQGEV----KCLKLELDAERTRAEQEwDAVARQLAQAEQEgqasLE 675
Cdd:COG3096    455 EEVLELEQKLSVADAARRQFEKAYELVCKiAGEVERSQAwqtaRELLRRYRSQQALAQRL-QQLRAQLAELEQR----LR 529

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  676 RQKVAhEEEVNRLQEKWEKERSW------LQQELDKTLETLERERAELETKLREQQTEMEAIRAQREEERSQA------D 743
Cdd:COG3096    530 QQQNA-ERLLEEFCQRIGQQLDAaeeleeLLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARApawlaaQ 608

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1720397337  744 SALYQMQ------LETEKERVSLLETLLRTQKELADASQQLERLRQDMKIQ 788
Cdd:COG3096    609 DALERLReqsgeaLADSQEVTAAMQQLLEREREATVERDELAARKQALESQ 659
PRK11281 PRK11281
mechanosensitive channel MscK;
1733-2029 5.80e-05

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 48.37  E-value: 5.80e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1733 EQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQYSRRQEEAAVSQAEaLQEALSKAQAALQEKEQSLLEQAELS 1812
Cdd:PRK11281    73 DKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQ-LESRLAQTLDQLQNAQNDLAEYNSQL 151

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1813 HTLEASTAALQATLDTCQASARQLEEALriREGEIQAQALQHHEVTQhLQQELC---QKKEELRQLLEkagarrsqenGI 1889
Cdd:PRK11281   152 VSLQTQPERAQAALYANSQRLQQIRNLL--KGGKVGGKALRPSQRVL-LQAEQAllnAQNDLQRKSLE----------GN 218

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1890 QEKQSLEQERQEetrrlleslkELQLTVAQREEEILMLREASSPRHRALpAEKPAlqplpaqQELERLQTALRQTEAREI 1969
Cdd:PRK11281   219 TQLQDLLQKQRD----------YLTARIQRLEHQLQLLQEAINSKRLTL-SEKTV-------QEAQSQDEAARIQANPLV 280

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720397337 1970 ewrekAQDLALSLAQSKASISSLQEITMFLQAS-----VLERESEQQR--------LQEELVLSRQALEEQQS 2029
Cdd:PRK11281   281 -----AQELEINLQLSQRLLKATEKLNTLTQQNlrvknWLDRLTQSERnikeqisvLKGSLLLSRILYQQQQA 348
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 1407-2130 6.02e-05

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 48.41  E-value: 6.02e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1407 QRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQ------ERDQEVTSQRQQIDELQKQQEQLAQALERKGQE 1480
Cdd:COG3096    290 LRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQaasdhlNLVQTALRQQEKIERYQEDLEELTERLEEQEEV 369

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1481 LVLQKERIQVLEDQRTLQtkilEEDLEQIKHSLRERSQEL------ASQWQLVHERADDGKS----PSKGQRGSLEHLkL 1550
Cdd:COG3096    370 VEEAAEQLAEAEARLEAA----EEEVDSLKSQLADYQQALdvqqtrAIQYQQAVQALEKARAlcglPDLTPENAEDYL-A 444

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1551 ILRDKEKEVE----CQQERIQELQGHMGQLEQQLQGLHRKVGETSlllthREQETATLQQHLQEAKEQGEL--REQVLQG 1624
Cdd:COG3096    445 AFRAKEQQATeevlELEQKLSVADAARRQFEKAYELVCKIAGEVE-----RSQAWQTARELLRRYRSQQALaqRLQQLRA 519

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1625 QLEEAQRDLAQRdHELETLRQEKQQTQDQE-------ESMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELE 1697
Cdd:COG3096    520 QLAELEQRLRQQ-QNAERLLEEFCQRIGQQldaaeelEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELA 598

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1698 VEGRQVRALEEVLGDLRAESREHEKAVLALQQrCAEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAenqysrrqe 1777
Cdd:COG3096    599 ARAPAWLAAQDALERLREQSGEALADSQEVTA-AMQQLLEREREATVERDELAARKQALESQIERLSQPGG--------- 668

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1778 eAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALqaTLDTCQASARQLE------EALRIREGEIQAQA 1851
Cdd:COG3096    669 -AEDPRLLALAERLGGVLLSEIYDDVTLEDAPYFSALYGPARHAI--VVPDLSAVKEQLAgledcpEDLYLIEGDPDSFD 745

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1852 LQHHEVTQhLQQELCQKKEElRQLL------EKAGARRSQENGIQEkqsLEQERQEETRRLLESLKELQLTvaQREEEIL 1925
Cdd:COG3096    746 DSVFDAEE-LEDAVVVKLSD-RQWRysrfpeVPLFGRAAREKRLEE---LRAERDELAEQYAKASFDVQKL--QRLHQAF 818

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1926 mlrEASSPRHRALpaekpALQPLPAQqELERLQTALRQTEAREIEWREKAQDLALSLAQSKASISSLQEitMFLQASVLE 2005
Cdd:COG3096    819 ---SQFVGGHLAV-----AFAPDPEA-ELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNK--LLPQANLLA 887

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 2006 RESEQQR---LQEELVLSRQALEEQQSGGPHSTSRADQGPKVGQGSQSGE-VETEPSPGVEEKERLTQRLERLQQAVAEL 2081
Cdd:COG3096    888 DETLADRleeLREELDAAQEAQAFIQQHGKALAQLEPLVAVLQSDPEQFEqLQADYLQAKEQQRRLKQQIFALSEVVQRR 967

                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1720397337 2082 E----VDRSKLQCHNA----QLRTALEQVERERRKLkRDSVRASRAGSLEARETMTS 2130
Cdd:COG3096    968 PhfsyEDAVGLLGENSdlneKLRARLEQAEEARREA-REQLRQAQAQYSQYNQVLAS 1023
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 53-301 6.58e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 47.84  E-value: 6.58e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337   53 LLLLVAKTQALEKEAHEKSQELMQLKSHGDLEKAELQDRVTELSALLTQSQKQNE---DYEKMVKALRETMEILETNHAE 129
Cdd:COG4942      8 ALLLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERriaALARRIRALEQELAALEAELAE 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  130 LMEHEASLSRNAQEEKLSLQQVIKAItqalasveeedtvtQSSGHEDSLQSdcnGLSQFDPQDPDRALTLVQSVLTRRQQ 209
Cdd:COG4942     88 LEKEIAELRAELEAQKEELAELLRAL--------------YRLGRQPPLAL---LLSPEDFLDAVRRLQYLKYLAPARRE 150

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  210 AVQDLRQQLSGCQEAMSFLQQQHDQWEEEGRALREKLQKLTGERDALAGQTVGLQGEVDSLTGERDALAGQTVDLQGEVD 289
Cdd:COG4942    151 QAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIA 230

                          250
                   ....*....|..
gi 1720397337  290 SLSRERELLQKA 301
Cdd:COG4942    231 RLEAEAAAAAER 242
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
 84-746 6.74e-05

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 48.30  E-value: 6.74e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337   84 EKAELQDRVTELSALLTQSQKQNEDYEKMVKALRETMEILETNHAELMEHEASLSRNAQEEKLSLQQVIKAITQALASVE 163
Cdd:pfam12128  242 EFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDR 321

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  164 EEdtvtqssghedslqsdcnglsqfdpqdpdraltlVQSVLTRRQQAVQDLRQQLSGCQEAMSFLQQQHDQWEEEGRALR 243
Cdd:pfam12128  322 SE----------------------------------LEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKALT 367

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  244 EKLQKLTGERDALAGQTVGLQGEVDSLTGERDALAGQTVDLQGEVDSLSRErELLQKARGELQQQLEVLEQEAWRLRRMN 323
Cdd:pfam12128  368 GKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQ-ALESELREQLEAGKLEFNEEEYRLKSRL 446

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  324 MELQLQGDSAQGEKlEQQEELHLAVRERERLQETLVGLEAKQSESLSELLTLREALESSRLEGELLKQERVEVAAALARA 403
Cdd:pfam12128  447 GELKLRLNQATATP-ELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDEL 525

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  404 EQSIVELSGS-ENSLKAEVADLRAAAVKLGALNEALALDKV-ELNQQLLQLEQENQSLCSRVEaaeqlrsalQVDLAEAE 481
Cdd:pfam12128  526 ELQLFPQAGTlLHFLRKEAPDWEQSIGKVISPELLHRTDLDpEVWDGSVGGELNLYGVKLDLK---------RIDVPEWA 596

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  482 RRREALWEKKTQLETQLQKAEEAGAELQAELRGTREEKEELKDKLSEAHHQQETATAHLEQLHQDAERQEETLARAVQEK 561
Cdd:pfam12128  597 ASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAER 676

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  562 EALVRER-AALEVRLQAVERDRQDLTEHVLGlrsakEQLESNLFEAQQQNSVIQVTKGQLEVQIQTIIQAKEVIQGEVKC 640
Cdd:pfam12128  677 KDSANERlNSLEAQLKQLDKKHQAWLEEQKE-----QKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKA 751

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  641 LKLELDAERTRAEQEWDAVARqLAQAEQEGQASLERQKVaHEEEVNR----LQEKWEKERswlqQELDKTLETLERERAE 716
Cdd:pfam12128  752 LETWYKRDLASLGVDPDVIAK-LKREIRTLERKIERIAV-RRQEVLRyfdwYQETWLQRR----PRLATQLSNIERAISE 825

                          650       660       670
                   ....*....|....*....|....*....|
gi 1720397337  717 LETKLREQQTEMEAIRAQREEERSQADSAL 746
Cdd:pfam12128  826 LQQQLARLIADTKLRRAKLEMERKASEKQQ 855
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
 675-1272 7.04e-05

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 48.30  E-value: 7.04e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  675 ERQKVAHEEEVNRLQEKWEKERSWLQQELDKtLETLERERAELETKLREQQTEMEAIRAQREEERSQADSALYQMQLETE 754
Cdd:pfam12128  229 DIQAIAGIMKIRPEFTKLQQEFNTLESAELR-LSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELN 307

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  755 KERVSLLETLLRTQKELADASQQLERLRQDMKIQKLKEQETTGMLQAQLQETQQELKEAAQQHRDDLAAFQKDKLDLQKQ 834
Cdd:pfam12128  308 GELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQ 387

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  835 VEDLMSQLVAHDDSQRlvkeeiEEKVKVAQECSRIQKELEKEnasLALSLVEKEKRLLILQEADSVRQQELSSLRQDIQE 914
Cdd:pfam12128  388 NNRDIAGIKDKLAKIR------EARDRQLAVAEDDLQALESE---LREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATA 458

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  915 AQEGQRELGVQVELLRQEVKEKEADFVAREAQLLEELEASRVAEQQLRAsLWAQEAKATQLQLQLRSTESQLEAlvaeqq 994
Cdd:pfam12128  459 TPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEA-LRQASRRLEERQSALDELELQLFP------ 531

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  995 PENQAQAQLASLCSVLQQALGSACEsrPELRGGGDSAPTLWGPDPDQnGASRLFKRWSLPTALSPEAVALAlQKLHQDVW 1074
Cdd:pfam12128  532 QAGTLLHFLRKEAPDWEQSIGKVIS--PELLHRTDLDPEVWDGSVGG-ELNLYGVKLDLKRIDVPEWAASE-EELRERLD 607

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1075 KARQARDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESEL-RDLHETAASLQSRLRQA 1153
Cdd:pfam12128  608 KAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKnKALAERKDSANERLNSL 687

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1154 ELQKmeAQNDRELLQASKEKLSAQVEHlqacvaeAQAQADAAAVLEEDLRTARSALKlknEELESERERAQALQEQGELK 1233
Cdd:pfam12128  688 EAQL--KQLDKKHQAWLEEQKEQKREA-------RTEKQAYWQVVEGALDAQLALLK---AAIAARRSGAKAELKALETW 755

                          570       580       590
                   ....*....|....*....|....*....|....*....
gi 1720397337 1234 VAQGKAlqeNLALLAQTLSNREREVETLQAEVQELEKQR 1272
Cdd:pfam12128  756 YKRDLA---SLGVDPDVIAKLKREIRTLERKIERIAVRR 791
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
 1687-1994 8.47e-05

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 47.91  E-value: 8.47e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1687 EQVRRLQEELEVEGRQVRALEEVLGDLRAESREHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTeqeQELAAL 1766
Cdd:pfam12128  237 MKIRPEFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELN---GELSAA 313

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1767 RAENQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQSLleQAELShtleastaALQATLDTCQASARQLEEALRIREge 1846
Cdd:pfam12128  314 DAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSW--QSELE--------NLEERLKALTGKHQDVTAKYNRRR-- 381

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1847 iQAQALQHHEVTQHLQQELCQKKEEL-RQLLEKAGARRSQENGIQEK-QSLEQERQEETRRLLESLKEL--QLTVAQREE 1922
Cdd:pfam12128  382 -SKIKEQNNRDIAGIKDKLAKIREARdRQLAVAEDDLQALESELREQlEAGKLEFNEEEYRLKSRLGELklRLNQATATP 460

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720397337 1923 EILMLREASSPRHRALPAEKPAlqplpAQQELERLQTALRQTEAREIEWREKAQDLALSLAQSKASISSLQE 1994
Cdd:pfam12128  461 ELLLQLENFDERIERAREEQEA-----ANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELEL 527
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1575-1803 9.89e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 47.07  E-value: 9.89e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1575 QLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQGELRE---QVLQGQLEEAQRDLAQRDHELETLRQEKQQTQ 1651
Cdd:COG4942     24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALArriRALEQELAALEAELAELEKEIAELRAELEAQK 103

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1652 DQEESMklkTSALQAALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLGDLRAESREHEKAVLALQQRC 1731
Cdd:COG4942    104 EELAEL---LRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALL 180

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720397337 1732 AEQAQEHEaeartlqdswlQAQATLTEQEQELAALRAENQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQ 1803
Cdd:COG4942    181 AELEEERA-----------ALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
571-816 1.16e-04

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 47.32  E-value: 1.16e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  571 LEVRLQAVERDRQDLTEHVLGLRSAKEQLESNLFEAQQQNSVIQvtkgqLEVQIQTIIQAKEVIQGEVkclkLELDAERT 650
Cdd:COG3206    166 LELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVD-----LSEEAKLLLQQLSELESQL----AEARAELA 236

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  651 RAEQEWDAVARQLAQAEQEGQASLErqkvaheeevnrlqekwekerSWLQQELDKTLETLERERAELETKLREQQTEMEA 730
Cdd:COG3206    237 EAEARLAALRAQLGSGPDALPELLQ---------------------SPVIQQLRAQLAELEAELAELSARYTPNHPDVIA 295

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  731 IRAQREEERSQADSALYQMQLETEKERVSLLETLLRTQKELADASQQLERLRQDM-KIQKLK-EQETTGMLQAQLQETQQ 808
Cdd:COG3206    296 LRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEaELRRLErEVEVARELYESLLQRLE 375


                   ....*...
gi 1720397337  809 ELKEAAQQ 816
Cdd:COG3206    376 EARLAEAL 383
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
352-875 1.21e-04

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 47.37  E-value: 1.21e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  352 ERLQETLVGLEAKQSESLSELLTLREALESSRLEGELLKQERVEVAAALARAEQSIVELSGSENSLKAEVADLRAAAVKL 431
Cdd:PRK03918   189 ENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERI 268

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  432 GALNEalaldKVELNQQLLQLEQENQSLCSRVEAAEQLRSALQVDLAEAERRREALWEKKTQLETQLQKAEEAGAELQaE 511
Cdd:PRK03918   269 EELKK-----EIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLE-E 342

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  512 LRGTREEKEELKDKLSEAHHQQETATAHLEQLHQDAERqeetlaRAVQEKEALVRERAALEVRLQAVERDRQDLTEHVLG 591
Cdd:PRK03918   343 LKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKR------LTGLTPEKLEKELEELEKAKEEIEEEISKITARIGE 416

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  592 LRSAKEQLESNLFEAQQQNSVIQVTKGQL-------------------EVQIQTIIQAKEVIQGEVKCLKLELDAERTRA 652
Cdd:PRK03918   417 LKKEIKELKKAIEELKKAKGKCPVCGRELteehrkelleeytaelkriEKELKEIEEKERKLRKELRELEKVLKKESELI 496

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  653 EQEwdAVARQLAQAEQE-GQASLERQKVAHE--EEVNRLQEKWEKERSWLQQELDK-------------TLETLERERAE 716
Cdd:PRK03918   497 KLK--ELAEQLKELEEKlKKYNLEELEKKAEeyEKLKEKLIKLKGEIKSLKKELEKleelkkklaelekKLDELEEELAE 574

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  717 LETKLREQQTEMEairaQREEERSQADSALYQMQLE---TEKERVSLLETLLRTQKELADASQQLERLRQDMKIQKLKEQ 793
Cdd:PRK03918   575 LLKELEELGFESV----EELEERLKELEPFYNEYLElkdAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELE 650

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  794 EttgMLQAQLQETQQELKEAAQQHRDDLAAFQKDKLDLQKQVEDLMSQLvahddsqRLVKEEIEEKVKVAQECSRIQKEL 873
Cdd:PRK03918   651 E---LEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTL-------EKLKEELEEREKAKKELEKLEKAL 720


                   ..
gi 1720397337  874 EK 875
Cdd:PRK03918   721 ER 722
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 1388-2108 1.29e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 47.37  E-value: 1.29e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1388 HKVESQQKMITELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHEL--------ENHSTHLAKELQERDQEVTSQRQQ 1459
Cdd:TIGR02169  230 KEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELnkkikdlgEEEQLRVKEKIGELEAEIASLERS 309

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1460 IDELQKQQEQLAQALERKGQELVLQKERIQVLEDQRTlQTKILEEDLEQIKHSLRERSQELASQWQLVHERADDGKSPSK 1539
Cdd:TIGR02169  310 IAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIE-EERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELK 388

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1540 GQRGSLEHLKLILRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQGELRE 1619
Cdd:TIGR02169  389 DYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYE 468

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1620 Q---VLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVR-----R 1691
Cdd:TIGR02169  469 QelyDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEvaagnR 548

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1692 LQ----EELEVEGRQVRALEEV---------LGDLRAESRE----HEKAVL-----------------------ALQQRC 1731
Cdd:TIGR02169  549 LNnvvvEDDAVAKEAIELLKRRkagratflpLNKMRDERRDlsilSEDGVIgfavdlvefdpkyepafkyvfgdTLVVED 628

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1732 AEQAQEHEAEAR--TLQDSWLQAQATLT-------EQEQELAALRAENQYSRRQEEAAVSQAEALQEALSKAQAALQEKE 1802
Cdd:TIGR02169  629 IEAARRLMGKYRmvTLEGELFEKSGAMTggsraprGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELS 708

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1803 QSLLEQAELSHTLEASTAALQATLDTCQASARQLEEALRIREGEIQAQALQHHEVTQHLQqELCQKKEELRQLLEKAGAR 1882
Cdd:TIGR02169  709 QELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIE-ELEEDLHKLEEALNDLEAR 787

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1883 RSQEnGIQEKQSLEQERQEETRRLLESLKELQLTVAQREEEILMLREASSPRHRALPAEKpaLQPLPAQQELERLQTALR 1962
Cdd:TIGR02169  788 LSHS-RIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLK--EQIKSIEKEIENLNGKKE 864

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1963 QTEAREIEWREKAQDLALSLAQSKASISSLQEITMFLQASVLERESEQQRLQEELVLSRQALEEQQSggphstSRADQGP 2042
Cdd:TIGR02169  865 ELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEE------ELSEIED 938

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 2043 KVGQGSQSGEVETEPSPGVEEKERLTQRLERL--------------QQAVAELEVDRSKLQCHNAQLRTALEQVERERRK 2108
Cdd:TIGR02169  939 PKGEDEEIPEEELSLEDVQAELQRVEEEIRALepvnmlaiqeyeevLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1060-1272 1.41e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 47.22  E-value: 1.41e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1060 EAVALALQKLHQDVWKARQARDDLRDQVQKLvqrltdteAQKSQVHSELQDLQRQLSQSQEEKSKW-----EGRQNSLES 1134
Cdd:COG4913    224 FEAADALVEHFDDLERAHEALEDAREQIELL--------EPIRELAERYAAARERLAELEYLRAALrlwfaQRRLELLEA 295

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1135 ELRDLHETAASLQSRLRQAELQKMEAQNDRELLQAS--------KEKLSAQVEHLQAcvaEAQAQADAAAVLEEDLRTAR 1206
Cdd:COG4913    296 ELEELRAELARLEAELERLEARLDALREELDELEAQirgnggdrLEQLEREIERLER---ELEERERRRARLEALLAALG 372

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720397337 1207 SALKLKNEELESERERAQALQEQGElkvAQGKALQENLALLAQTLSNREREVETLQAEVQELEKQR 1272
Cdd:COG4913    373 LPLPASAEEFAALRAEAAALLEALE---EELEALEEALAEAEAALRDLRRELRELEAEIASLERRK 435
mukB PRK04863
chromosome partition protein MukB;
1443-1892 1.56e-04

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 47.26  E-value: 1.56e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1443 AKELQERDQEVTSQRQQIDELQKQQEQLAQALERKGQELVLQKERiqvledqrtlqTKILEEDLEQIKHSLRERSQELAS 1522
Cdd:PRK04863   278 ANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEA-----------ESDLEQDYQAASDHLNLVQTALRQ 346

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1523 QWQLvhERAddgkspskgqRGSLEHLKLILRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLThrEQETA 1602
Cdd:PRK04863   347 QEKI--ERY----------QADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALD--VQQTR 412

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1603 TLQ-QHLQEAKEQGelreqvlQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAAL---EQAHATLKER 1678
Cdd:PRK04863   413 AIQyQQAVQALERA-------KQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHsqfEQAYQLVRKI 485

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1679 QGELEehREQVRRLQEELEVEGRQVRALEEVLGDLRAESREhekavlaLQQRCAEQAQeheaeARTLQDSWLQAQATLTE 1758
Cdd:PRK04863   486 AGEVS--RSEAWDVARELLRRLREQRHLAEQLQQLRMRLSE-------LEQRLRQQQR-----AERLLAEFCKRLGKNLD 551

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1759 QEQELAALRAENQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLEE 1838
Cdd:PRK04863   552 DEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTE 631

                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1720397337 1839 AlriregeIQAQALQHHEVTQ---HLQQELCQKKEELRQLLEKAGARRSQENGIQEK 1892
Cdd:PRK04863   632 Y-------MQQLLERERELTVerdELAARKQALDEEIERLSQPGGSEDPRLNALAER 681
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
1110-1678 1.71e-04

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 46.98  E-value: 1.71e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1110 DLQRQLSQSQEEKSKWEGRQNSLESELRDLHETAASLQSRLRQAELQKMEAQNDRELLQASKEKLSAQVEHLQACVAEAQ 1189
Cdd:PRK03918   190 NIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIE 269

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1190 AQADAAAVLEEDLRTARSALKLKNEELESERERAQALQEQGELKVaqgkaLQENLALLAQTLSNREREVETLQAEVQELE 1269
Cdd:PRK03918   270 ELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEK-----RLSRLEEEINGIEERIKELEEKEERLEELK 344

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1270 KQREMQKAALEllslDLKKRSREVDLQQEQIQELEQCRSVLEHLPMAVQERE-QKLSVQRDQIRELENDREAQRSVLEHQ 1348
Cdd:PRK03918   345 KKLKELEKRLE----ELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKElEELEKAKEEIEEEISKITARIGELKKE 420

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1349 LLDLEQKAQVIESQRGQIQDLKKQLgTLECLALELEESHHKVESQQKMITELEGQREMQRVALTHL--TLDLEERSQELQ 1426
Cdd:PRK03918   421 IKELKKAIEELKKAKGKCPVCGREL-TEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELekVLKKESELIKLK 499

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1427 AQSSQLHELENH-STHLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERKGQ---ELVLQKERIQVLEDQRTLQTKIL 1502
Cdd:PRK03918   500 ELAEQLKELEEKlKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEElkkKLAELEKKLDELEEELAELLKEL 579

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1503 EEDLEQIKHSLRERSQELasqwqlvhERADDGKSPSKGQRGSLEHLKLILRDKEKEVECQQERIQELQGHMGQLEQQLQG 1582
Cdd:PRK03918   580 EELGFESVEELEERLKEL--------EPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEE 651

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1583 LHRKVGETslllTHREQEtatlQQHLQEAKEQGELREQV--LQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKlK 1660
Cdd:PRK03918   652 LEKKYSEE----EYEELR----EEYLELSRELAGLRAELeeLEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALE-R 722

                          570
                   ....*....|....*...
gi 1720397337 1661 TSALQAALEQAHATLKER 1678
Cdd:PRK03918   723 VEELREKVKKYKALLKER 740
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1198-1373 2.18e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 45.91  E-value: 2.18e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1198 LEEDLRTARSALKLKNEELESERERAQALQEQGELKVAQGKALQENLALLAQTLSNREREVETLQAEVQELEKQREMQKA 1277
Cdd:COG4942     25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKE 104

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1278 ALELLSLDLKKRSR----EVDLQQEQIQELEQCRSVLEHLPMAVQEREQKLSVQRDQIRELENDREAQRSVLEHQLLDLE 1353
Cdd:COG4942    105 ELAELLRALYRLGRqpplALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELE 184

                          170       180
                   ....*....|....*....|
gi 1720397337 1354 QKAQVIESQRGQIQDLKKQL 1373
Cdd:COG4942    185 EERAALEALKAERQKLLARL 204
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 1080-1702 2.48e-04

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 46.65  E-value: 2.48e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1080 RDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELR----DLHETAASLQSRL----- 1150
Cdd:pfam15921  305 QEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARterdQFSQESGNLDDQLqklla 384

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1151 ----RQAELQKMEAQNDRelLQASKEKLSAQVEHLQACVAEAQAQADAAAVLEEDLRT--------ARSALKLKNEELEs 1218
Cdd:pfam15921  385 dlhkREKELSLEKEQNKR--LWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSecqgqmerQMAAIQGKNESLE- 461

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1219 ereRAQALQEQGELKVAQGKALQENLALLAQTLSNREREVETLQAEVQELEKqremqkaALELLSLDLKKRSREVDlqqe 1298
Cdd:pfam15921  462 ---KVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKER-------AIEATNAEITKLRSRVD---- 527

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1299 qiqeleqcrsvlehlpMAVQEReQKLSVQRDQIRELENDREAQRsvlehqlLDLEQKAQVIESQRGQIQDLKKQLGTLEC 1378
Cdd:pfam15921  528 ----------------LKLQEL-QHLKNEGDHLRNVQTECEALK-------LQMAEKDKVIEILRQQIENMTQLVGQHGR 583

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1379 LALELeeshhKVESQQkmiteLEGQREMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQ 1458
Cdd:pfam15921  584 TAGAM-----QVEKAQ-----LEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQ 653

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1459 qidelqkqqeqlaqalerkgqelvlqkERIQVLEDQRTLQTKI--LEEDLEQIKHSLRERSQELASqwqlvheraddgks 1536
Cdd:pfam15921  654 ---------------------------ERDQLLNEVKTSRNELnsLSEDYEVLKRNFRNKSEEMET-------------- 692

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1537 pskgqrgSLEHLKLILRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVgetslllTHREQETATLQ---QHLQEAKE 1613
Cdd:pfam15921  693 -------TTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQI-------TAKRGQIDALQskiQFLEEAMT 758

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1614 QGELREQVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELE-EHREQVR-R 1691
Cdd:pfam15921  759 NANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQrQEQESVRlK 838

                          650
                   ....*....|.
gi 1720397337 1692 LQEELEVEGRQ 1702
Cdd:pfam15921  839 LQHTLDVKELQ 849
PRK11281 PRK11281
mechanosensitive channel MscK;
1058-1277 2.88e-04

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 46.44  E-value: 2.88e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1058 SPEAVALALQKLHQDVWKARQARDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQL-SQSQEEKSKWEGRQnsLESEL 1136
Cdd:PRK11281    53 LLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNdEETRETLSTLSLRQ--LESRL 130

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1137 RDLHETAASLQSRLRQAELQKMEAQNDRELLQASkekLSAQVEHLQACVAEAQAQADAAAVLEEDLRTARSA----LKLK 1212
Cdd:PRK11281   131 AQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAA---LYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAeqalLNAQ 207

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720397337 1213 NE----ELESERERAQALQEQGELKVAQGKALQENLALLaQTLSNREREVETlQAEVQELEKQREMQKA 1277
Cdd:PRK11281   208 NDlqrkSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLL-QEAINSKRLTLS-EKTVQEAQSQDEAARI 274
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
1604-1848 2.97e-04

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 46.16  E-value: 2.97e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1604 LQQHLQEAKEQGELREQVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEEsmklkTSALQAALEQAHATLKERQGELE 1683
Cdd:COG3206    162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEE-----AKLLLQQLSELESQLAEARAELA 236

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1684 EHREQVRRLQEELEVEGRQVRALEEvlgdlraesrehEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTEQEQEL 1763
Cdd:COG3206    237 EAEARLAALRAQLGSGPDALPELLQ------------SPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALR 304

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1764 AALRAENQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLEEALRIR 1843
Cdd:COG3206    305 AQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAEALT 384


                   ....*
gi 1720397337 1844 EGEIQ 1848
Cdd:COG3206    385 VGNVR 389
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 591-1017 3.03e-04

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 46.10  E-value: 3.03e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  591 GLRSAKEQLESNLFEAQQQNSVIQVTK------GQLEVQIQTIIQAKEVIQGEVKCLKLELDAErtrAEQEWDAVARQLA 664
Cdd:COG3096    226 GVRKAFQDMEAALRENRMTLEAIRVTQsdrdlfKHLITEATNYVAADYMRHANERRELSERALE---LRRELFGARRQLA 302

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  665 qAEQEGQASLERQKVAHEEEVNRLQEKWEKERSWLQ--QELDKTLETLERERAELEtKLREQQTEMEAIRAQREEERSQA 742
Cdd:COG3096    303 -EEQYRLVEMARELEELSARESDLEQDYQAASDHLNlvQTALRQQEKIERYQEDLE-ELTERLEEQEEVVEEAAEQLAEA 380

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  743 DSALYQMQLETEKERVSL--LETLLRTQKELADASQQ----LERLRQ-----DMKIQKLKEQETTgmLQAQLQETQQELK 811
Cdd:COG3096    381 EARLEAAEEEVDSLKSQLadYQQALDVQQTRAIQYQQavqaLEKARAlcglpDLTPENAEDYLAA--FRAKEQQATEEVL 458

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  812 EAAQQHRD-DLAAFQKDK-LDLQKQVEDLMSQLVAHDDSQRLVKEEIEEKVKVAQEcsriqkelekenASLALSLVEKEK 889
Cdd:COG3096    459 ELEQKLSVaDAARRQFEKaYELVCKIAGEVERSQAWQTARELLRRYRSQQALAQRL------------QQLRAQLAELEQ 526

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  890 RLLILQEADSVRQQELSSLRQDIQEAQEGQRELgVQVELLRQEVKEKEADFVAREAQLLEELEASRVAEQQL--RASLW- 966
Cdd:COG3096    527 RLRQQQNAERLLEEFCQRIGQQLDAAEELEELL-AELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELaaRAPAWl 605

                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720397337  967 AQEAKATQLQLQLRST-----------ESQLEALVAEQQPENQAQAQLASL---CSVLQQALGSA 1017
Cdd:COG3096    606 AAQDALERLREQSGEAladsqevtaamQQLLEREREATVERDELAARKQALesqIERLSQPGGAE 670
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 1068-1515 3.11e-04

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 46.17  E-value: 3.11e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1068 KLHQDVWKARQARDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLqrqLSQSQEEKSKWEGRQNSLESELRDLHETAASLQ 1147
Cdd:TIGR04523  215 SLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQL---KDEQNKIKKQLSEKQKELEQNNKKIKELEKQLN 291

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1148 SRlrQAELQKMEAQNDRELLQASKEKLSAQVEHLQACVAEAQAQADAAAVLEEDLRTARSALK-LKNEELESERERAQAL 1226
Cdd:TIGR04523  292 QL--KSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTnSESENSEKQRELEEKQ 369

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1227 QEQGELKVAQGKALQENLALLAQTlSNREREVETLQAEVQELEKQREMQKAALELLSLDLKKRSREVDLQQEQIQELEQC 1306
Cdd:TIGR04523  370 NEIEKLKKENQSYKQEIKNLESQI-NDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQ 448

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1307 RSVLEhlpMAVQEREQKLSVQRDQIRELENDREAQRSVLEHQLLDLEQKAQVIESQRGQIQDLKKQLGTLECLALELEES 1386
Cdd:TIGR04523  449 DSVKE---LIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEK 525

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1387 HHKVESQ----QKMITELEGQREMQRVALTHLtlDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDE 1462
Cdd:TIGR04523  526 IEKLESEkkekESKISDLEDELNKDDFELKKE--NLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIK 603

                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1720397337 1463 LQKQQEQLAQALERKGQELVLQKERIQVLEDQRTLQTKILEEDLEQIKHSLRE 1515
Cdd:TIGR04523  604 EIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKE 656
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 499-858 3.39e-04

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 45.78  E-value: 3.39e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  499 QKAEEAGAELQAELRGTREEKEELKDKLSEAHHQqetatahLEQLHQDAERQEETLARAVQEKEALVRERAALEVRLQAV 578
Cdd:TIGR04523  303 QKEQDWNKELKSELKNQEKKLEEIQNQISQNNKI-------ISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKL 375

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  579 ERDRQDLTEHVLGLRSAKEQLESNLFEAQQQNSviqvtkgQLEVQIQTIIQAKEVIQGEVKCLKleldAERTRAEQEWDA 658
Cdd:TIGR04523  376 KKENQSYKQEIKNLESQINDLESKIQNQEKLNQ-------QKDEQIKKLQQEKELLEKEIERLK----ETIIKNNSEIKD 444

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  659 VARQLAQAEQEGQaSLERQKVAHEEEVNRLQEKWEKERswlqQELDKTLETLERERAELEtKLREQQTEMEaiRAQREEE 738
Cdd:TIGR04523  445 LTNQDSVKELIIK-NLDNTRESLETQLKVLSRSINKIK----QNLEQKQKELKSKEKELK-KLNEEKKELE--EKVKDLT 516

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  739 RSQADSALYQMQLETEKervslletlLRTQKELADASQQLERLRQDMKIQKLKEQETTGMLQ-AQLQETQQELKEAAQQH 817
Cdd:TIGR04523  517 KKISSLKEKIEKLESEK---------KEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEiEELKQTQKSLKKKQEEK 587

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|.
gi 1720397337  818 RDDLAAFQKDKLDLQKQVEDLMSQLVAHDDSQRLVKEEIEE 858
Cdd:TIGR04523  588 QELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEK 628
mukB PRK04863
chromosome partition protein MukB;
396-832 3.46e-04

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 46.10  E-value: 3.46e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  396 VAAALARAEQSIVELSGSENSLKAEVADLRaaaVKLGALNEALaldkvelnqqllqleqenQSLCSRVEAAEQLRSALQV 475
Cdd:PRK04863   270 VAADYMRHANERRVHLEEALELRRELYTSR---RQLAAEQYRL------------------VEMARELAELNEAESDLEQ 328

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  476 DLaEAERRREALWEKKTQLETQLQKAEEAGAELQAELrgtreekEELKDKLSEAHHQQETATAHLEQLHQDAERQEETLA 555
Cdd:PRK04863   329 DY-QAASDHLNLVQTALRQQEKIERYQADLEELEERL-------EEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLA 400

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  556 RAVQEKEALVRERAALEVRLQAVERDRQ-----DLTEHVLG-----LRSAKEQLESNLFEAQQQNSVIQVTKGQLEVQIQ 625
Cdd:PRK04863   401 DYQQALDVQQTRAIQYQQAVQALERAKQlcglpDLTADNAEdwleeFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQ 480

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  626 TIIQakevIQGEVkclkleldaERTRAEQEWDAVARQL----AQAEQEGQAsleRQKVAHEEEVNRLQEKWEKERSWLQQ 701
Cdd:PRK04863   481 LVRK----IAGEV---------SRSEAWDVARELLRRLreqrHLAEQLQQL---RMRLSELEQRLRQQQRAERLLAEFCK 544

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  702 ELDKTLET---LERERAELETKLREQQTEMEAIRAQREEERSQadsalyQMQLETEKERVSLLETLLRTqkeladASQQL 778
Cdd:PRK04863   545 RLGKNLDDedeLEQLQEELEARLESLSESVSEARERRMALRQQ------LEQLQARIQRLAARAPAWLA------AQDAL 612

                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1720397337  779 ERLRQdmkiQKLKEQETTGMLQAQLQETQQELKEaAQQHRDDLAAfQKDKLDLQ 832
Cdd:PRK04863   613 ARLRE----QSGEEFEDSQDVTEYMQQLLERERE-LTVERDELAA-RKQALDEE 660
PRK11281 PRK11281
mechanosensitive channel MscK;
601-930 3.80e-04

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 46.06  E-value: 3.80e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  601 SNLFEAQQQNSVIQVTKGQLEVQIQTIIQAKEvIQGEVKCLK------LELDAERTRAEQEWDAVARQLAQAEQEGQASl 674
Cdd:PRK11281    22 LSSAFARAASNGDLPTEADVQAQLDALNKQKL-LEAEDKLVQqdleqtLALLDKIDRQKEETEQLKQQLAQAPAKLRQA- 99

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  675 erqkvahEEEVNRLQEKwekerswLQQELDKTLETLERerAELETKLREQQTEMEaiRAQreEERSQADSALYQMQLETE 754
Cdd:PRK11281   100 -------QAELEALKDD-------NDEETRETLSTLSL--RQLESRLAQTLDQLQ--NAQ--NDLAEYNSQLVSLQTQPE 159

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  755 kervslletllRTQKELADASQQLERLRQDMKIQKLKEQETTGMLQAQLQETQQELKEAAQQHRDDLAAFQKDKLDLQKQ 834
Cdd:PRK11281   160 -----------RAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQ 228

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  835 VEDLMSQLVAHDDSQRLVKEEIEEK-VKVAQECSRIQKELEKENASLALSLVEKE--------KRLLI-LQEADSVRQQE 904
Cdd:PRK11281   229 RDYLTARIQRLEHQLQLLQEAINSKrLTLSEKTVQEAQSQDEAARIQANPLVAQEleinlqlsQRLLKaTEKLNTLTQQN 308

                          330       340
                   ....*....|....*....|....*.
gi 1720397337  905 LsSLRQDIQEAQEGQRELGVQVELLR 930
Cdd:PRK11281   309 L-RVKNWLDRLTQSERNIKEQISVLK 333
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1545-1765 3.96e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 45.14  E-value: 3.96e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1545 LEHLKLILRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQGELREQVLQG 1624
Cdd:COG4942     29 LEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAE 108

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1625 QLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQahatLKERQGELEEHREQVRRLQEELEVEGRQVR 1704
Cdd:COG4942    109 LLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEE----LRADLAELAALRAELEAERAELEALLAELE 184

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720397337 1705 ALEEVLGDLRAESREHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTEQEQELAA 1765
Cdd:COG4942    185 EERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1063-1523 4.11e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 45.68  E-value: 4.11e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1063 ALALQKLHQDVWKARQARDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQ-EEKSKWEGRQNSLESELRDLHE 1141
Cdd:COG4913    280 ALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERER 359

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1142 TAASLQSRLRQAELQkmeaqndrelLQASKEKLSAQVEHLQACVAEAQAQADAAAVLEEDLRTARSALKLKNEELESERE 1221
Cdd:COG4913    360 RRARLEALLAALGLP----------LPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIA 429

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1222 RAQALqeqgelKVAQGKALQENLALLAQTLSNREREVETLQAEVQELEKQREMQKA--------ALELL----------- 1282
Cdd:COG4913    430 SLERR------KSNIPARLLALRDALAEALGLDEAELPFVGELIEVRPEEERWRGAiervlggfALTLLvppehyaaalr 503

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1283 ---SLDLKKR--SREVDLQQEQIQELEQ--------------------------------CRSV--LEHLPMAV------ 1317
Cdd:COG4913    504 wvnRLHLRGRlvYERVRTGLPDPERPRLdpdslagkldfkphpfrawleaelgrrfdyvcVDSPeeLRRHPRAItragqv 583

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1318 ---QEREQKlsvqRDQIRELEN-----DREAQRSVLEHQLLDLEQKAQVIESQRGQIQDLKKQLGTLECLALELEESHH- 1388
Cdd:COG4913    584 kgnGTRHEK----DDRRRIRSRyvlgfDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWd 659

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1389 --KVESQQKMITELEGQREmqrvalthltlDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQ 1466
Cdd:COG4913    660 eiDVASAEREIAELEAELE-----------RLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEE 728

                          490       500       510       520       530
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1720397337 1467 QEQLAQALERKGQELVLqkERIQVLEDQrtLQTKILEEDLEQIKHSLRERSQELASQ 1523
Cdd:COG4913    729 LDELQDRLEAAEDLARL--ELRALLEER--FAAALGDAVERELRENLEERIDALRAR 781
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
398-818 4.26e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 45.53  E-value: 4.26e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  398 AALARAEQSIVELSGSENSLKAEVADLRAAAVKLGALNEALAldKVELNQQLLQLEQENQSLCSRVEAAEQLRSALQVDL 477
Cdd:COG4717     71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELE--ELREELEKLEKLLQLLPLYQELEALEAELAELPERL 148

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  478 AEAERRREALWEKKTQLETQLQKAEEAGAELQAELRGTREEKEElkdklseahhQQETATAHLEQLHQDAERQEETLARA 557
Cdd:COG4717    149 EELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEE----------ELQDLAEELEELQQRLAELEEELEEA 218

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  558 VQEKEALVRERAALEVRLQAVERDRQDLTEH----VLGLRSAKEQLESNLFEAQQQNSVIQVTKGQLEVQIQTIIQAKEV 633
Cdd:COG4717    219 QEELEELEEELEQLENELEAAALEERLKEARllllIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKA 298

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  634 IQGEVKCLKLELDAERTRAEQEWDAVARQLAQAEQEGQASLERQKVAHEEEVNRLQEKWEKERSWLQQELDKTLETLE-- 711
Cdd:COG4717    299 SLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLae 378

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  712 ---------RERAELETKLREQQTEMEAIRAQREEERSQADSALYQMQLETEKERVSLLET-LLRTQKELADASQQLERL 781
Cdd:COG4717    379 agvedeeelRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEeLEELEEELEELREELAEL 458

                          410       420       430
                   ....*....|....*....|....*....|....*..
gi 1720397337  782 RQdmKIQKLKEQETTGMLQAQLQETQQELKEAAQQHR 818
Cdd:COG4717    459 EA--ELEQLEEDGELAELLQELEELKAELRELAEEWA 493
mukB PRK04863
chromosome partition protein MukB;
1556-1810 4.49e-04

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 45.72  E-value: 4.49e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1556 EKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLL-THREQETATLQQHLQEAKEQGEL--REQVLQGQLEEAQRD 1632
Cdd:PRK04863   850 ERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNLLAdETLADRVEEIREQLDEAEEAKRFvqQHGNALAQLEPIVSV 929

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1633 LAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALE-QAHATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLG 1711
Cdd:PRK04863   930 LQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQrRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLR 1009

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1712 DLRAESREHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTEQ----EQELAALRAENQYSRRQEEAAVSQAEAL 1787
Cdd:PRK04863  1010 QAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERararRDELHARLSANRSRRNQLEKQLTFCEAE 1089

                          250       260
                   ....*....|....*....|...
gi 1720397337 1788 QEALSKAQAALQEKEQSLLEQAE 1810
Cdd:PRK04863  1090 MDNLTKKLRKLERDYHEMREQVV 1112
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
 708-1339 4.53e-04

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 460256 [Multi-domain]  Cd Length: 1081  Bit Score: 45.55  E-value: 4.53e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  708 ETLERERAELETKLREQQTEMEAIRAQREEERSQADSALYQMQLETEKERVSLLETLlrtQKELADASQQLERLRQDMKI 787
Cdd:pfam01576    6 EMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEM---RARLAARKQELEEILHELES 82

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  788 QKLKEQETTGMLQAQLQETQQELKEAAQQHRDDLAAFQKDKLDLqkqvedlmsqlVAHDDSQRLVKEEIEEKVKVAQECS 867
Cdd:pfam01576   83 RLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEK-----------VTTEAKIKKLEEDILLLEDQNSKLS 151

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  868 RIQKELEKENASLALSLVEKEKRLLILQEADSVRQQELSSLRQDIQEAQEGQRELGV---QVELLRQEVKEKEADFVARE 944
Cdd:pfam01576  152 KERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKakrKLEGESTDLQEQIAELQAQI 231

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  945 AQLLEELEASRVAEQQLRASLWAQEAKATQLQLQLRSTESQLEALVAEQQPENQAQAQLASLCSVLQQALGSAcesRPEL 1024
Cdd:pfam01576  232 AELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEAL---KTEL 308

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1025 RGGGDSAPTLWGPDPDQNGASRLFKRWSLPTALSPEAVALALQKLHQdvwkarQARDDLRDQVQKLVQRLTDTEAQKSQV 1104
Cdd:pfam01576  309 EDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHT------QALEELTEQLEQAKRNKANLEKAKQAL 382

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1105 HSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDLhetaaslQSRLRQAELQKMEAQNDRELLQASKEKLSAQVEHLQAc 1184
Cdd:pfam01576  383 ESENAELQAELRTLQQAKQDSEHKRKKLEGQLQEL-------QARLSESERQRAELAEKLSKLQSELESVSSLLNEAEG- 454

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1185 vaeaqaqadAAAVLEEDLRTARSALKLKNEELESERERAQALQEQGELKVAQGKALQENLALLAQTLSNREREVETLQAE 1264
Cdd:pfam01576  455 ---------KNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQ 525

                          570       580       590       600       610       620       630
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720397337 1265 VQELEKQREMQKAALELLSLDLKKRSREVDLQQEQIQELEQCRSVLEHLPMAVQEREQKLSVQRDQIRELENDRE 1339
Cdd:pfam01576  526 LSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLE 600
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1392-1620 4.83e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 44.75  E-value: 4.83e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1392 SQQKMITELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLA 1471
Cdd:COG4942     17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1472 QALERKGQELVLQKERIQVLEDQRTLQTKILEEDLEQIKHSLrersQELASQWQLVHERADDGKSPSKGQRGSLEHLKLI 1551
Cdd:COG4942     97 AELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRL----QYLKYLAPARREQAEELRADLAELAALRAELEAE 172

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720397337 1552 LRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQGELREQ 1620
Cdd:COG4942    173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
1625-2028 5.01e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 45.14  E-value: 5.01e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1625 QLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLK--ERQGELEEHREQVRRLQEELEVEGRQ 1702
Cdd:COG4717     75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQllPLYQELEALEAELAELPERLEELEER 154

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1703 VRALEEVLGDLRAESREHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQYSRRQEEAAVS 1782
Cdd:COG4717    155 LEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLEN 234

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1783 QAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLEEALRIREGEIQAQALQhhEVTQHLQ 1862
Cdd:COG4717    235 ELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAE--ELQALPA 312

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1863 QELCQKKEELRQLLEKAGARRSQENGIQEKQSLEQERQEETRRLLESLKELQLTVAQREEEILMLREASSPRHRALPAEK 1942
Cdd:COG4717    313 LEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALE 392

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1943 PALQPLPAQQELERLQTALRQ--TEAREIEWREKAQDLALSLAQSKASISSLQEITMFLQASVLERESEQQRLQEELVLS 2020
Cdd:COG4717    393 QAEEYQELKEELEELEEQLEEllGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELA 472


                   ....*...
gi 1720397337 2021 RQALEEQQ 2028
Cdd:COG4717    473 ELLQELEE 480
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 1620-1851 5.11e-04

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 44.82  E-value: 5.11e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1620 QVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELEVE 1699
Cdd:COG3883     19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRS 98

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1700 GRQVRALEEVLG-----------DLRAESREHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRA 1768
Cdd:COG3883     99 GGSVSYLDVLLGsesfsdfldrlSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQA 178

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1769 ENQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLEEALRIREGEIQ 1848
Cdd:COG3883    179 EQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAGAAGAAGAA 258


                   ...
gi 1720397337 1849 AQA 1851
Cdd:COG3883    259 AGS 261
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1248-1487 5.27e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 44.75  E-value: 5.27e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1248 AQTLSNREREVETLQAEVQELEKQREMQKAALELLSLDLKKRSREVDLQQEqiqeleqcrsvlehlpmAVQEREQKLSVQ 1327
Cdd:COG4942     19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALAR-----------------RIRALEQELAAL 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1328 RDQIRELENDREAQRSVLEHQLLDLEQKAQVIEsQRGQIQDLKKQLGTLECLALELEESHHK--VESQQKMITELEGQRE 1405
Cdd:COG4942     82 EAELAELEKEIAELRAELEAQKEELAELLRALY-RLGRQPPLALLLSPEDFLDAVRRLQYLKylAPARREQAEELRADLA 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1406 MQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERKGQELVLQK 1485
Cdd:COG4942    161 ELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240


                   ..
gi 1720397337 1486 ER 1487
Cdd:COG4942    241 ER 242
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 1077-1677 5.49e-04

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 45.40  E-value: 5.49e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1077 RQARDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDLHETAASLQSRLRQAELQ 1156
Cdd:TIGR04523  116 KEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNK 195

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1157 KMEAQNDRELLQASKEK---LSAQVEHLQacvaeaqaqaDAAAVLEEDLRTARSALKLKNEELESERERAQALQEQGELK 1233
Cdd:TIGR04523  196 LLKLELLLSNLKKKIQKnksLESQISELK----------KQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKI 265

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1234 VAQGKALQENLALLAQTLSNREREVETLQAEVQELEKQREmqkaalELLSLDLKKRSREVDLQqeqiqeleqcrsvLEHL 1313
Cdd:TIGR04523  266 KKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKE------QDWNKELKSELKNQEKK-------------LEEI 326

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1314 PMAVQEREQKLSVQRDQIRELENDREAQRSVLEHQLLDLEQKAQVIESQRGQIQDLKKQLGTLECLALELEEshhKVESQ 1393
Cdd:TIGR04523  327 QNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLES---KIQNQ 403

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1394 QKMITELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQA 1473
Cdd:TIGR04523  404 EKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQN 483

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1474 LERKGQELVLQKERIQVLedqrTLQTKILEE---DLEQIKHSLRERSQELASQwqlvheraddgKSPSKGQRGSLEHlKL 1550
Cdd:TIGR04523  484 LEQKQKELKSKEKELKKL----NEEKKELEEkvkDLTKKISSLKEKIEKLESE-----------KKEKESKISDLED-EL 547

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1551 ILRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKvgetslllthreqetatlQQHLQEAKEQGELREQVLQGQLEEAQ 1630
Cdd:TIGR04523  548 NKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKK------------------QEEKQELIDQKEKEKKDLIKEIEEKE 609

                          570       580       590       600
                   ....*....|....*....|....*....|....*....|....*..
gi 1720397337 1631 RDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKE 1677
Cdd:TIGR04523  610 KKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKE 656
PRK12704 PRK12704
phosphodiesterase; Provisional
 627-773 6.56e-04

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 44.77  E-value: 6.56e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  627 IIQAKEviqgEVKCLKLELDAERTRAEQEWDAVARQLAQAEQegqaSLERQKVAHEEEVNRLQEKwekerswlQQELDKT 706
Cdd:PRK12704    59 LLEAKE----EIHKLRNEFEKELRERRNELQKLEKRLLQKEE----NLDRKLELLEKREEELEKK--------EKELEQK 122

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720397337  707 LETLERERAELETKLREQQTEMEAIRA-QREEERSQadsALYQMQLETEKERVSLLETLLRTQKELAD 773
Cdd:PRK12704   123 QQELEKKEEELEELIEEQLQELERISGlTAEEAKEI---LLEKVEEEARHEAAVLIKEIEEEAKEEAD 187
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1414-1671 6.72e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 44.37  E-value: 6.72e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1414 LTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERKGQELVLQKERIQVLED 1493
Cdd:COG4942     11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1494 QRtlqtKILEEDLEQIKHSLRERSQELAsqwqlvheraddgkspskgQRGSLEHLKLILRDkeKEVECQQERIQELQGHM 1573
Cdd:COG4942     91 EI----AELRAELEAQKEELAELLRALY-------------------RLGRQPPLALLLSP--EDFLDAVRRLQYLKYLA 145

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1574 GQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQgelrEQVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQ 1653
Cdd:COG4942    146 PARREQAEELRADLAELAALRAELEAERAELEALLAELEEE----RAALEALKAERQKLLARLEKELAELAAELAELQQE 221

                          250
                   ....*....|....*...
gi 1720397337 1654 EESMKLKTSALQAALEQA 1671
Cdd:COG4942    222 AEELEALIARLEAEAAAA 239
PTZ00121 PTZ00121
MAEBL; Provisional
 865-1614 7.11e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 45.13  E-value: 7.11e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  865 ECSRIQKELEKENASLALSLVEKEKRLLILQEADSVRQQELSSLRQDIQEAQEGQRELGVQVELLRQEVKEKEADFVARE 944
Cdd:PTZ00121  1080 DFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARK 1159

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  945 AQLLEELEASRVAEQQLRASLwAQEAKATQLQLQLRSTESQLEALVAeQQPENQAQAQLASLCSVLQQAlgSACESRPEL 1024
Cdd:PTZ00121  1160 AEDARKAEEARKAEDAKKAEA-ARKAEEVRKAEELRKAEDARKAEAA-RKAEEERKAEEARKAEDAKKA--EAVKKAEEA 1235

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1025 RgggdsaptlwgpdPDQNGASRLFKRWSLPTALSPEAVALALQKLHQDVWKARQARDdlRDQVQKLVQRLTDTEAQKSqv 1104
Cdd:PTZ00121  1236 K-------------KDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARK--ADELKKAEEKKKADEAKKA-- 1298

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1105 hselqdlqrqlsqsqEEKSKWEgrqnslesELRDLHETAaslqsrlRQAELQKMEAQNDRELLQASKEKLSAQVEHLQAC 1184
Cdd:PTZ00121  1299 ---------------EEKKKAD--------EAKKKAEEA-------KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAA 1348

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1185 VAEAQAQADAAAVLEEDLRTAR----------SALKLKNEEL----------ESERERAQALQEQGELKV----AQGKAL 1240
Cdd:PTZ00121  1349 KAEAEAAADEAEAAEEKAEAAEkkkeeakkkaDAAKKKAEEKkkadeakkkaEEDKKKADELKKAAAAKKkadeAKKKAE 1428

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1241 QENLALLAQTLSNREREVETLQAEVQELEKQREMQKAALELLSLD-LKKRSREVDLQQEQIQELEQCRSVLEHLPMAVQE 1319
Cdd:PTZ00121  1429 EKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADeAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEA 1508

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1320 REQKlsvqrDQIRELENDREAQ--RSVLEHQLLDLEQKAQviesQRGQIQDLKKQLGTLECLALELEESHHKVESQQKMI 1397
Cdd:PTZ00121  1509 KKKA-----DEAKKAEEAKKADeaKKAEEAKKADEAKKAE----EKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMA 1579

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1398 TELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERk 1477
Cdd:PTZ00121  1580 LRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEE- 1658

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1478 gQELVLQKERIQVLEDQRTLQTKILEEDLEQIKHSLRERSQELASQWQLVHERADDGKSPSKGQRGSLEHLKLILRDKEK 1557
Cdd:PTZ00121  1659 -NKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKK 1737

                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1720397337 1558 EVECQQERIQELQGHMGQlEQQLQglHRKVGETSLLLTHREQETATLQQHLQEAKEQ 1614
Cdd:PTZ00121  1738 EAEEDKKKAEEAKKDEEE-KKKIA--HLKKEEEKKAEEIRKEKEAVIEEELDEEDEK 1791
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1515-1730 7.52e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 44.37  E-value: 7.52e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1515 ERSQELASQWQLVHERADDGKSPSKGQRGSLEHLKLILRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLL 1594
Cdd:COG4942     20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1595 THREQETATLQQHLQEAKEQGELREQVLQGQLEEAQRDLA-------QRDHELETLRQEKQQTQDQEESMKLKTSALQAA 1667
Cdd:COG4942    100 EAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQylkylapARREQAEELRADLAELAALRAELEAERAELEAL 179

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720397337 1668 LEQAHATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLGDLRAESREHEKAVLALQQR 1730
Cdd:COG4942    180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
46 PHA02562
endonuclease subunit; Provisional
 673-893 7.72e-04

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 44.62  E-value: 7.72e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  673 SLERQKVAHEEEVNRLQEKWEKERSWLQQELDKTLETLERERAELEtklrEQQTEMEAIRAQrEEERSQADSALYQ--MQ 750
Cdd:PHA02562   192 HIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIE----ELTDELLNLVMD-IEDPSAALNKLNTaaAK 266

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  751 LETEKERVSLLETLLRTQKELADASQQLERlrQDMKIQKLKEQETTGMLQ-AQLQETQQELKEAAqqhrDDLAAFQKDKL 829
Cdd:PHA02562   267 IKSKIEQFQKVIKMYEKGGVCPTCTQQISE--GPDRITKIKDKLKELQHSlEKLDTAIDELEEIM----DEFNEQSKKLL 340

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720397337  830 DLQKQVEDLMSQLVAHDDSQRLVKEEIE----EKVKVAQECSRIQKELEKENASLALSLVEKEKRLLI 893
Cdd:PHA02562   341 ELKNKISTNKQSLITLVDKAKKVKAAIEelqaEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIV 408
PTZ00121 PTZ00121
MAEBL; Provisional
 644-1467 7.80e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 45.13  E-value: 7.80e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  644 ELDAERTRAEQEWDAVARQLAQAEQEGQASLERQKVAHEEEVNRLQEKWEKERSWLQQELDKTLETLERERAELETKLRE 723
Cdd:PTZ00121  1080 DFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARK 1159

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  724 QQTEMEAIRAQREEERSQADSALYQMQLETEKErvslletlLRTQKEL--ADASQQLERLRQDMKIQKLKEQETTgmlqa 801
Cdd:PTZ00121  1160 AEDARKAEEARKAEDAKKAEAARKAEEVRKAEE--------LRKAEDArkAEAARKAEEERKAEEARKAEDAKKA----- 1226

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  802 qlqetqQELKEAAQQHRDDLAAFQKDKLDLQKQVEDLMSQLVAHddsqrLVKEEIEEKVKVAQECSRIQKELEKENASLA 881
Cdd:PTZ00121  1227 ------EAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAH-----FARRQAAIKAEEARKADELKKAEEKKKADEA 1295

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  882 LSLVEKEKRLLILQEADSVRQQElsSLRQDIQEAQEGQRELGVQVEllrqEVKEKEADFVAREAQLLEELEASRvaEQQL 961
Cdd:PTZ00121  1296 KKAEEKKKADEAKKKAEEAKKAD--EAKKKAEEAKKKADAAKKKAE----EAKKAAEAAKAEAEAAADEAEAAE--EKAE 1367

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  962 RASLWAQEAKATQLQLQLRSTESQLEALVAEQQPENQAQAQLASLCSVLQQALGSACESRPELRGGGDS---APTLWGPD 1038
Cdd:PTZ00121  1368 AAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAkkkAEEAKKAD 1447

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1039 PDQNGASRLFKRWSLPTALSPEAVALALQKLHQDVWKARQARDDLRDQVQKLVQRLTDTEAQKSQvhselqdlqRQLSQS 1118
Cdd:PTZ00121  1448 EAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKA---------DEAKKA 1518

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1119 QEEKSKWEGRQnsleSELRDLHETAASLQSRLRQAELQKMEAQNDRELLQASKEKLSAQVEHLQACVAEAQAQADAAAVL 1198
Cdd:PTZ00121  1519 EEAKKADEAKK----AEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARI 1594

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1199 EEDLRTARSALKLKNEEL---ESERERAQALQEQGELK--VAQGKALQENLALLAQTLSNREREVETLQAEVQELEKQRE 1273
Cdd:PTZ00121  1595 EEVMKLYEEEKKMKAEEAkkaEEAKIKAEELKKAEEEKkkVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDK 1674

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1274 MQKAALELLSLDLKKRSREVDLQQEQIQELEQCRSVLEHLPMAVQEREQKLSVQRDQIRELENDREAQRSVLEhqlldle 1353
Cdd:PTZ00121  1675 KKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAE------- 1747

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1354 qKAQVIESQRGQIQDLKKQlgtleclaLELEESHHKVESQQKMITELEGQREMQRVALTHLTLDLEERSQELQAQSSQLH 1433
Cdd:PTZ00121  1748 -EAKKDEEEKKKIAHLKKE--------EEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGN 1818

                          810       820       830
                   ....*....|....*....|....*....|....*
gi 1720397337 1434 ELENHSTHL-AKELQERDQEVTSQRQQIDELQKQQ 1467
Cdd:PTZ00121  1819 LVINDSKEMeDSAIKEVADSKNMQLEEADAFEKHK 1853
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
 494-635 8.86e-04

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 44.43  E-value: 8.86e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  494 LETQLQKAEEAGAELQAELRGTREEKEELKDKLSEahhQQETATAHLEQLHQDAerqEETLARAVQEKEALVRERAALEv 573
Cdd:PRK00409   525 LEELERELEQKAEEAEALLKEAEKLKEELEEKKEK---LQEEEDKLLEEAEKEA---QQAIKEAKKEADEIIKELRQLQ- 597

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720397337  574 RLQAVERDRQDLTEHVLGLRSAKEQLESNLFEAQQQNSVIQVtkGQlEVQIQTIIQAKEVIQ 635
Cdd:PRK00409   598 KGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELKV--GD-EVKYLSLGQKGEVLS 656
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
 502-1279 9.26e-04

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 44.65  E-value: 9.26e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  502 EEAGAELQAELRGTREEKEELKDKLSEAHHQQETATAHLEQLH-QDAERQEETLARAVQEKEALVRERAALEVRLQ-AVE 579
Cdd:TIGR00606  318 ERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQeHIRARDSLIQSLATRLELDGFERGPFSERQIKnFHT 397

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  580 RDRQDLTEHVLGLRSAKEQLESNLFEAQQQNSVIQVTKGQLEVQIQTIIQAKEVIQGEVKCLKLELdaertraeQEWDAV 659
Cdd:TIGR00606  398 LVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKEL--------QQLEGS 469

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  660 ARQLAQAEQEGQASLERQKVAHEEEVNRLQEKWEKERSWLQQELDKTLETLERERAELE-TKLREQQTEMEAIRAQREEE 738
Cdd:TIGR00606  470 SDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNhHTTTRTQMEMLTKDKMDKDE 549

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  739 R-------------SQADSALYQMQLET-----EKERVSLLETLLRTQKELADASQQLERLRQDMKI---------QKLK 791
Cdd:TIGR00606  550 QirkiksrhsdeltSLLGYFPNKKQLEDwlhskSKEINQTRDRLAKLNKELASLEQNKNHINNELESkeeqlssyeDKLF 629

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  792 EQETTGMLQAQLQETQQELKEAAQQhRDDLAAFQKDKLDLQKQVEDLMSQLVAHDDSQRLVKEEIEEKVKVAQECSRIQK 871
Cdd:TIGR00606  630 DVCGSQDEESDLERLKEEIEKSSKQ-RAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAP 708

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  872 ELEKENASLalsLVEKEKRLLILQEADSVRQQELSSLRQDIQEAQEGQRELGVQVELLRQEVKEKEadfvareaqlleEL 951
Cdd:TIGR00606  709 DKLKSTESE---LKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQE------------TL 773

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  952 EASRVAEQQLRASLWAQEAKATQLQLQLRSTESQLEALVAEQQPenqaqaqlASLCSVLQQALGSACESRPELRGGGDSA 1031
Cdd:TIGR00606  774 LGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQG--------SDLDRTVQQVNQEKQEKQHELDTVVSKI 845

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1032 PTLWGPDPDQNGASRLFKRWSLPTALSPEAVALALQKLHQdvwkARQARDDLRDQVQKLVQRLTDTEAQKSQVHSELQDL 1111
Cdd:TIGR00606  846 ELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQ----FEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKD 921

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1112 QRQ----LSQSQEEKSKWEGRQNSLESELRDLHETAASLQSRLRQA-ELQKMEAQNDRELLQASKEKLSAQVEHLQACVA 1186
Cdd:TIGR00606  922 QQEkeelISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGkDDYLKQKETELNTVNAQLEECEKHQEKINEDMR 1001

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1187 EAQAQADAAAVLEEDLRTARSALKLKNEELESERERAQALQEQGELKVAQGKALQENLALLAQTLSNREREVETLQaevQ 1266
Cdd:TIGR00606 1002 LMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQ---K 1078

                          810
                   ....*....|...
gi 1720397337 1267 ELEKQREMQKAAL 1279
Cdd:TIGR00606 1079 GYEKEIKHFKKEL 1091
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
1242-1802 1.05e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 44.28  E-value: 1.05e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1242 ENLALLAQTLSNREREVETLQAEVQELEKQREMQKAALE-------LLSLDLKKRSREVDLQQEQIQELEQCRSVLEHLP 1314
Cdd:PRK03918   165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEevlreinEISSELPELREELEKLEKEVKELEELKEEIEELE 244

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1315 MAVQEREQKLSVQRDQIRELENDREaqrsvlehqllDLEQKAQVIESQRGQIQDLKKQLGTLECLALELEESHHKVESQQ 1394
Cdd:PRK03918   245 KELESLEGSKRKLEEKIRELEERIE-----------ELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIE 313

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1395 KMITELEGQREmqrvalthltlDLEERSQELQAQSSQLHELENHSTHLAK---ELQERDQEVTSQRQQIDELQKQQEQLA 1471
Cdd:PRK03918   314 KRLSRLEEEIN-----------GIEERIKELEEKEERLEELKKKLKELEKrleELEERHELYEEAKAKKEELERLKKRLT 382

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1472 ----QALERKGQELVLQKERIQvlEDQRTLQTKILEedLEQIKHSLRERSQELASQwqlvheradDGKSPSKGQRGSLEH 1547
Cdd:PRK03918   383 gltpEKLEKELEELEKAKEEIE--EEISKITARIGE--LKKEIKELKKAIEELKKA---------KGKCPVCGRELTEEH 449

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1548 LKLILRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTH-------REQETATLQQHLQEAKEQGELREQ 1620
Cdd:PRK03918   450 RKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLkelaeqlKELEEKLKKYNLEELEKKAEEYEK 529

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1621 VLQ--GQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQ----AHATLKERQGELEEH--------- 1685
Cdd:PRK03918   530 LKEklIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEElgfeSVEELEERLKELEPFyneylelkd 609

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1686 -REQVRRLQEELEVEGRQVRALEEVLGDLRAESREHEKAVLALQQRCAEqaQEHEaeartlqdswlQAQATLTEQEQELA 1764
Cdd:PRK03918   610 aEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSE--EEYE-----------ELREEYLELSRELA 676

                          570       580       590
                   ....*....|....*....|....*....|....*...
gi 1720397337 1765 ALRAENQYSRRQEEAAVSQAEALQEALSKAQAALQEKE 1802
Cdd:PRK03918   677 GLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELE 714
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1732-1924 1.13e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 43.60  E-value: 1.13e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1732 AEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQsllEQAEL 1811
Cdd:COG4942     19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK---EIAEL 95

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1812 SHTLEASTAALQATLDTCQASARQLEEALRIREGEIqAQALQHHEVTQHLQQELCQKKEELRQLLEK-AGARRSQENGIQ 1890
Cdd:COG4942     96 RAELEAQKEELAELLRALYRLGRQPPLALLLSPEDF-LDAVRRLQYLKYLAPARREQAEELRADLAElAALRAELEAERA 174

                          170       180       190
                   ....*....|....*....|....*....|....
gi 1720397337 1891 EKQSLEQERQEETRRLLESLKELQLTVAQREEEI 1924
Cdd:COG4942    175 ELEALLAELEEERAALEALKAERQKLLARLEKEL 208
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
 1085-1791 1.20e-03

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 44.44  E-value: 1.20e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1085 DQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKwegRQNSLESELRDLHETAASLQSRLRQ-AELQKMEAQND 1163
Cdd:pfam12128  244 TKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQE---TSAELNQLLRTLDDQWKEKRDELNGeLSAADAAVAKD 320

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1164 RELLQASKEKLSAqveHLQACVAEAQAQAdaaavleEDLRTARSALKLKNEELESERERAQALQEQGELKVAqgKALQEN 1243
Cdd:pfam12128  321 RSELEALEDQHGA---FLDADIETAAADQ-------EQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRS--KIKEQN 388

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1244 LALLAQTLSNREREVET-----------LQAEVQELEKQREMQKAALELLSLDLKKRSREVDLQQEQIQELEQCRSVLEH 1312
Cdd:pfam12128  389 NRDIAGIKDKLAKIREArdrqlavaeddLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLEN 468

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1313 LPMAVQEREQKLSVQRDQIRELENDREAQRSVLEHQLLDLEQKAQVIESQRGQIQDLKKQLGTL--------ECLALELE 1384
Cdd:pfam12128  469 FDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQagtllhflRKEAPDWE 548

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1385 ESHHKVESQQ-----KMITELEGQREMQRVALTHLTLDLEE-------------------RSQELQAQSSQLHELENHST 1440
Cdd:pfam12128  549 QSIGKVISPEllhrtDLDPEVWDGSVGGELNLYGVKLDLKRidvpewaaseeelrerldkAEEALQSAREKQAAAEEQLV 628

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1441 HLAKELQERDQEVT-----------SQRQQIDELQKQQEQLAQALERKGQELVlqkERIQVLEDQRTLQTKILEEDLEQI 1509
Cdd:pfam12128  629 QANGELEKASREETfartalknarlDLRRLFDEKQSEKDKKNKALAERKDSAN---ERLNSLEAQLKQLDKKHQAWLEEQ 705

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1510 KHSLRERSQELASQWQLVHERADDgkspskgQRGSLEHLKLILRD--KEKEVECQQERIQELQGhMGQLEQQLQGLHRKV 1587
Cdd:pfam12128  706 KEQKREARTEKQAYWQVVEGALDA-------QLALLKAAIAARRSgaKAELKALETWYKRDLAS-LGVDPDVIAKLKREI 777

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1588 GETSLLLTHREQETATLQQHLQEAKEQGELREQVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAA 1667
Cdd:pfam12128  778 RTLERKIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVR 857

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1668 LEQAHATLKERQGELEEHREQVRRLQEELEVeGRQVRALEEVLgdlraesREHEKAVLALQQRCAEQAQEHEAEART-LQ 1746
Cdd:pfam12128  858 LSENLRGLRCEMSKLATLKEDANSEQAQGSI-GERLAQLEDLK-------LKRDYLSESVKKYVEHFKNVIADHSGSgLA 929

                          730       740       750       760
                   ....*....|....*....|....*....|....*....|....*
gi 1720397337 1747 DSWLQAQATLTEQEQELAALRAENQYSRRQEEAAVSQAEALQEAL 1791
Cdd:pfam12128  930 ETWESLREEDHYQNDKGIRLLDYRKLVPYLEQWFDVRVPQSIMVL 974
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
 1214-1916 1.23e-03

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 44.19  E-value: 1.23e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1214 EELESERERAQALQEQGELKVAQGKALQENLALLAQTLSNREREVETLQAEVQELEKQREM-----QKAALELLSLDLKK 1288
Cdd:TIGR00618  225 EKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERinrarKAAPLAAHIKAVTQ 304

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1289 RSREVDLQQEQIQELEQCRSVLEHLPMAVQEREQKLSVQRDQIRELENDREAQRSVLEHQLLDLEQKAQVIEsqrgqiqd 1368
Cdd:TIGR00618  305 IEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHT-------- 376

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1369 LKKQLGTLECLALELEESHHKVESQQKMITELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQE 1448
Cdd:TIGR00618  377 LTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKL 456

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1449 RDQEVTSQRQQIDELQKQQEQLAQALERKGQELVLQKERIQVLEDQRTLQTKILEEdLEQIKHSLRERSQELASQWQLVH 1528
Cdd:TIGR00618  457 EKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIH-PNPARQDIDNPGPLTRRMQRGEQ 535

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1529 ERADDGKSPSKGQRGSLEHLKLILRDKEKEVECQQERI---QELQGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQ 1605
Cdd:TIGR00618  536 TYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSiltQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQH 615

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1606 QHLQEAKEQGELRE--QVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQ--EESMKLKTSALQAALEQAHATLKERQGE 1681
Cdd:TIGR00618  616 ALLRKLQPEQDLQDvrLHLQQCSQELALKLTALHALQLTLTQERVREHALsiRVLPKELLASRQLALQKMQSEKEQLTYW 695

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1682 LEEHREQVRRLQEELEVEG---RQVRALEEVLGDLRAESREHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTE 1758
Cdd:TIGR00618  696 KEMLAQCQTLLRELETHIEeydREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQ 775

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1759 QEQELAALRAENQYSRRQEEAAVSQaeaLQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLee 1838
Cdd:TIGR00618  776 TGAELSHLAAEIQFFNRLREEDTHL---LKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQ-- 850

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1839 alriregeiqaqaLQHHEVTQHLQQELCQKKEELRQLLEKAGARRSQENGIQEK--QSLEQERQEETRRLLESLKELQLT 1916
Cdd:TIGR00618  851 -------------LLKYEECSKQLAQLTQEQAKIIQLSDKLNGINQIKIQFDGDalIKFLHEITLYANVRLANQSEGRFH 917
CagA_N pfam18971
CagA protein; The Helicobacter pylori type IV secretion effector CagA is a major bacterial ...
 671-839 1.24e-03

CagA protein; The Helicobacter pylori type IV secretion effector CagA is a major bacterial virulence determinant and critical for gastric carcinogenesis. X-ray crystallographic analysis of the N-terminal CagA fragment (residues 1-876) revealed that the region has a structure comprised of three discrete domains. Domain I constitutes a mobile CagA N terminus, while Domain II tethers CagA to the plasma membrane by interacting with membrane phosphatidylserine. Domain III interacts intramolecularly with the intrinsically disordered C-terminal region, and this interaction potentiates the pathogenic scaffold/hub function of CagA.


Pssm-ID: 408741 [Multi-domain]  Cd Length: 876  Bit Score: 43.99  E-value: 1.24e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  671 QASLERQKVAHEEEVNRLQEKWEK---ERSWLQQELDKTLETLERERAELETKLREQQTEMEAIRAQREEERSQADSALY 747
Cdd:pfam18971  598 KAVAEAKSTGNYDEVKKAQKDLEKslrKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALINKEANRDARAIAY 677

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  748 QMQLETEKERVSllETLLRTQKELADASQQLERLRQDMKIQKLKEQETTGMLQ-------------AQLQETQQELKEAA 814
Cdd:pfam18971  678 TQNLKGIKRELS--DKLEKISKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKgsvkdlginpewiSKVENLNAALNEFK 755

                          170       180
                   ....*....|....*....|....*
gi 1720397337  815 QQHRDDLAAFQKDKLDLQKQVEDLM 839
Cdd:pfam18971  756 NGKNKDFSKVTQAKSDLENSVKDVI 780
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
1585-1926 1.32e-03

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 43.35  E-value: 1.32e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1585 RKVGETSLLLTHREQETATLQQHLQEAKEQGELREQVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSAL 1664
Cdd:COG4372      6 EKVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEEL 85

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1665 QAALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLGDLRAESREHEKAVLALQQRCAEQAQEHEAEART 1744
Cdd:COG4372     86 NEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEE 165

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1745 LQDSWLQAQATLTEQEQELAALRAENQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQA 1824
Cdd:COG4372    166 LAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELE 245

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1825 TLDTCQASARQLEEALRIREGEIQAQALQHHEVTQHLQQELCQKKEELRQLLEKAGARRSQENGIQEKQSLEQERQEETR 1904
Cdd:COG4372    246 EDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELA 325

                          330       340
                   ....*....|....*....|..
gi 1720397337 1905 RLLESLKELQLTVAQREEEILM 1926
Cdd:COG4372    326 KKLELALAILLAELADLLQLLL 347
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
1075-1453 1.38e-03

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 43.88  E-value: 1.38e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1075 KARQARDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDLHETAASLQSRLRQAE 1154
Cdd:PRK02224   360 ELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTAR 439

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1155 LQKMEAQndrELLQASKEKLSAQVEHLQACVAEAQAQADAAavleEDLRTARSALKLKNEELESERERAQALQE---QGE 1231
Cdd:PRK02224   440 ERVEEAE---ALLEAGKCPECGQPVEGSPHVETIEEDRERV----EELEAELEDLEEEVEEVEERLERAEDLVEaedRIE 512

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1232 LKVAQGKALQENLALLAQTLSNREREVETLQAEVQELEKQREMQKAALELLSLDLKKRSREVDLQQEQIQELEQCRSVLE 1311
Cdd:PRK02224   513 RLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE 592

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1312 HLPMAVQERE------QKLSVQRDQIRELENDREAQRSVLEHQLLDLEQK--AQVIESQRGQIQDLKKQLGTLECLALEL 1383
Cdd:PRK02224   593 RIRTLLAAIAdaedeiERLREKREALAELNDERRERLAEKRERKRELEAEfdEARIEEAREDKERAEEYLEQVEEKLDEL 672

                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1384 EESHHKVESQQKMITELEGQREMQRVALTHLtldlEERSQELQAQSSQLHELENHSTHLAKELQERDQEV 1453
Cdd:PRK02224   673 REERDDLQAEIGAVENELEELEELRERREAL----ENRVEALEALYDEAEELESMYGDLRAELRQRNVET 738
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 1393-1698 1.43e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 43.96  E-value: 1.43e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1393 QQKMITELEGQREMQRVALTHLTLDLEERSQELQ-------AQSSQLHELENHSTHLAK-ELQERDQEVTSQRQQIDELQ 1464
Cdd:pfam17380  280 HQKAVSERQQQEKFEKMEQERLRQEKEEKAREVErrrkleeAEKARQAEMDRQAAIYAEqERMAMERERELERIRQEERK 359

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1465 KQQEQLAQalerkgQELVLQKERIQVLEDQRTLQTKILEEDLEQIKHSLRERSQELASQWQLVHERADDGKSPSKGQRGS 1544
Cdd:pfam17380  360 RELERIRQ------EEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEAR 433

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1545 LEHLKLILRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHR----EQETATLQQHLQEAKE---QGEL 1617
Cdd:pfam17380  434 QREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRkraeEQRRKILEKELEERKQamiEEER 513

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1618 REQVLQGQLEEAQRDLAQRDHELETlRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELE 1697
Cdd:pfam17380  514 KRKLLEKEMEERQKAIYEEERRREA-EEERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAEYE 592


                   .
gi 1720397337 1698 V 1698
Cdd:pfam17380  593 A 593
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
700-940 1.47e-03

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 43.85  E-value: 1.47e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  700 QQELDKTLETLERERAELETKLREQQTEMEAIRAQREEERSQADSALYQMQLetekerVSLLETLLRTQKELADASQQLE 779
Cdd:COG3206    170 REEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQL------SELESQLAEARAELAEAEARLA 243

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  780 RLRQDMK-----IQKLKEQETTGMLQAQLQETQQELKEAAQQHRDDLAAFQKdkldLQKQVEDLMSQLVahddsqrlvke 854
Cdd:COG3206    244 ALRAQLGsgpdaLPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIA----LRAQIAALRAQLQ----------- 308

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  855 eiEEKVKVAQECSRIQKELEKENASLALSLVEKEKRLLILQEadsvRQQELSSLRQDIQEAQEGQRELGVQVELLRQEVK 934
Cdd:COG3206    309 --QEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPE----LEAELRRLEREVEVARELYESLLQRLEEARLAEA 382


                   ....*.
gi 1720397337  935 EKEADF 940
Cdd:COG3206    383 LTVGNV 388
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
461-769 1.48e-03

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 43.35  E-value: 1.48e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  461 SRVEAAEQLRSALQVDLAEAERRREALWEKKTQLETQLQKAEEAGAELQAELRGTREEKEELKDKLSEAHHQQETATAHL 540
Cdd:COG4372     52 EELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQR 131

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  541 EQLHQDAERQEETLARAVQEKEALVRERAALEVRLQAVERDRQDLTehvlglrsaKEQLESNLFEAQQQNSVIQVTKGQL 620
Cdd:COG4372    132 KQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALS---------EAEAEQALDELLKEANRNAEKEEEL 202

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  621 EVQIQTIIQAKEVIQGEVKCLKLELDAERTRAEQEWDAVARQLAQAEQEGQASLERQKVAHEEEVNRLQEKWEKERSWLQ 700
Cdd:COG4372    203 AEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAA 282

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720397337  701 QELDKTLETLERERAELETKLREQQTEMEAIRAQREEERSQADSALYQMQLETEKERVSLLETLLRTQK 769
Cdd:COG4372    283 LELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLVGLL 351
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 1438-1785 1.52e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 43.57  E-value: 1.52e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1438 HSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERKGQELVLQKERIQVLEDQRTLQTKI------LEEDLEQIKH 1511
Cdd:pfam17380  276 HIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQermameRERELERIRQ 355

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1512 SLRERSQElasqwqlvheraddgkspskgqrgslehlklilRDKEKEVECQQERIQELQghMGQLEQQlQGLHRKVGETS 1591
Cdd:pfam17380  356 EERKRELE---------------------------------RIRQEEIAMEISRMRELE--RLQMERQ-QKNERVRQELE 399

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1592 LLLTHREQETATLQQHLQEAKEQGELREQVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKlktsaLQAALEQA 1671
Cdd:pfam17380  400 AARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLR-----QQEEERKR 474

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1672 HATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLGD--LRAESREHEKAVLALQQRCAEQAQEHEAEARTLQDSW 1749
Cdd:pfam17380  475 KKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRklLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRI 554

                          330       340       350
                   ....*....|....*....|....*....|....*.
gi 1720397337 1750 LQAQATLTEQEQELAALRAENQYSRRQEEAAVSQAE 1785
Cdd:pfam17380  555 QEQMRKATEERSRLEAMEREREMMRQIVESEKARAE 590
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
 1083-1651 2.04e-03

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 43.42  E-value: 2.04e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1083 LRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQlSQSQEEKSKWEGRQNSLESELRDLHETAASLQSRLRQ--AELQKMEA 1160
Cdd:TIGR00618  305 IEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQ-QSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQqhTLTQHIHT 383

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1161 -QNDRELLQASKEKLSAQVEHLQACVAEAQAQADAAAVLEEDLRTARSALKLKNEELESERERAQALQEQGELKVAQGKA 1239
Cdd:TIGR00618  384 lQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQE 463

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1240 LQENLALLAQTLSNrereVETLQAEVQELEKQREMQKAALELLSLDLKKRSREVDLQQEQIQELEQCRSVLEHLPMAVQE 1319
Cdd:TIGR00618  464 SAQSLKEREQQLQT----KEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQ 539

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1320 REQKLSVQRDQIRELENDREAQRSVLEHQLLDLEQKAQVIESQRGQIQDLKKQLgtleclalelEESHHKVESQQKMITE 1399
Cdd:TIGR00618  540 LETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNIT----------VRLQDLTEKLSEAEDM 609

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1400 LEGQREMQRVALTHlTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQK--QQEQLAQALERK 1477
Cdd:TIGR00618  610 LACEQHALLRKLQP-EQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELlaSRQLALQKMQSE 688

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1478 GQELVLQKERI-QVLEDQRTLQTKILEED--LEQIKHSLRERSQELASQWQLVHERAddgKSPSKGQRGSLEHLKLILRD 1554
Cdd:TIGR00618  689 KEQLTYWKEMLaQCQTLLRELETHIEEYDreFNEIENASSSLGSDLAAREDALNQSL---KELMHQARTVLKARTEAHFN 765

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1555 KEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQGELREQVLQGQLEEAQRDLA 1634
Cdd:TIGR00618  766 NNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLG 845

                          570
                   ....*....|....*..
gi 1720397337 1635 QRDHELETLRQEKQQTQ 1651
Cdd:TIGR00618  846 EITHQLLKYEECSKQLA 862
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
 1618-1923 2.13e-03

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 462303 [Multi-domain]  Cd Length: 488  Bit Score: 42.96  E-value: 2.13e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1618 REQVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELE 1697
Cdd:pfam07888   28 RAELLQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELS 107

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1698 VEGRQVRALEEVLGDLRAESREHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQYSRRQE 1777
Cdd:pfam07888  108 ASSEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEEL 187

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1778 EAAVSQAEALQEALSKAQAA---LQEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLEEALRIREGEIQAQALQH 1854
Cdd:pfam07888  188 RSLSKEFQELRNSLAQRDTQvlqLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSMAAQR 267

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1855 HEVTQHLQQELCQKKEELRQLLEKAGA-RRSQENGIQEKQSLEQERQEETRRLLESLKELQLTVAQREEE 1923
Cdd:pfam07888  268 DRTQAELHQARLQAAQLTLQLADASLAlREGRARWAQERETLQQSAEADKDRIEKLSAELQRLEERLQEE 337
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 647-881 2.14e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 42.83  E-value: 2.14e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  647 AERTRAEQEWDAVARQLAQAEQEgQASLERQKVAHEEEVNRLQEKwekerswlQQELDKTLETLERERAELETKLREQQT 726
Cdd:COG4942     20 DAAAEAEAELEQLQQEIAELEKE-LAALKKEEKALLKQLAALERR--------IAALARRIRALEQELAALEAELAELEK 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  727 EMEAIRAQREEERSQADSALYQMQLETEKERVSLL---ETLLRTQKELADASQQLERLRQDMKIQKlKEQETTGMLQAQL 803
Cdd:COG4942     91 EIAELRAELEAQKEELAELLRALYRLGRQPPLALLlspEDFLDAVRRLQYLKYLAPARREQAEELR-ADLAELAALRAEL 169

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720397337  804 QETQQELKEAAQQHRDDLAAFQKDKLDLQKQVEDLMSQLVAHddsqrlvKEEIEEKVKVAQECSRIQKELEKENASLA 881
Cdd:COG4942    170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAEL-------AAELAELQQEAEELEALIARLEAEAAAAA 240
CHASE3 COG5278
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms];
1594-2028 2.24e-03

Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms];


Pssm-ID: 444089 [Multi-domain]  Cd Length: 530  Bit Score: 42.97  E-value: 2.24e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1594 LTHREQETATLQQHLQEAKE--QGELREQVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEEsmkLKTSALQAALEQA 1671
Cdd:COG5278     78 LEPYEEARAEIDELLAELRSltADNPEQQARLDELEALIDQWLAELEQVIALRRAGGLEAALAL---VRSGEGKALMDEI 154

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1672 HATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLGDLRAESREHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQ 1751
Cdd:COG5278    155 RARLLLLALALAALLLAAAALLLLLLALAALLALAELLLLALARALAALLLLLLLEAELAAAAALLAAAAALAALAALEL 234

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1752 AQATLTEQEQELAALRAENQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQA 1831
Cdd:COG5278    235 LAALALALALLLAALLLALLAALALAALLAAALLALAALLLALAAAAALAAAAALELAAAEALALAELELELLLAAAAAA 314

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1832 SARQLEEALRIREGEIQAQALQHHEVTQHLQQELCQKKEELRQLLEKAGARRSQENGIQEKQSLEQERQEETRRLLESLK 1911
Cdd:COG5278    315 AAAAAAAAAALAALLALALATALAAAAAALALLAALLAEAAAAAAEEAEAAAEAAAAALAGLAEVEAEGAAEAVELEVLA 394

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1912 ELQLTVAQREEEILMLREASSPRHRALPAEKPALQPLPAQQELERLQTALRQTEAREIEWREKAQDLALSLAQSKASISS 1991
Cdd:COG5278    395 IAAAAAAAAAEAAAAAAAAAAASAAEALELAEALAEALALAEEEALALAAASSELAEAGAALALAAAEALAEELAAVAAL 474

                          410       420       430
                   ....*....|....*....|....*....|....*..
gi 1720397337 1992 LQEITMFLQASVLERESEQQRLQEELVLSRQALEEQQ 2028
Cdd:COG5278    475 AALAAAAAALAEAEAAAALAAAAALSLALALAALLLA 511
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
 682-815 2.39e-03

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 43.28  E-value: 2.39e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  682 EEEVNRLQEKWEKerswLQQELDKTLETLERERAELETKLREQQTEMEAIRAQREEERSQADSALYQmqletekervsll 761
Cdd:PRK00409   515 KEKLNELIASLEE----LERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQ------------- 577

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1720397337  762 etLLRTQKELADASQQLERLRQDMKIQKLKEQEttgmlqaqLQETQQELKEAAQ 815
Cdd:PRK00409   578 --AIKEAKKEADEIIKELRQLQKGGYASVKAHE--------LIEARKRLNKANE 621
mukB PRK04863
chromosome partition protein MukB;
856-1273 2.75e-03

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 43.02  E-value: 2.75e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  856 IEEKVKVAQECSRIQKELEKENASLalslVEKEKRLLILQEADSVRQQELSSLRQDIQEAQEGQRelgvqvelLRQEVKE 935
Cdd:PRK04863   285 LEEALELRRELYTSRRQLAAEQYRL----VEMARELAELNEAESDLEQDYQAASDHLNLVQTALR--------QQEKIER 352

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  936 KEADFVAREAQLLEELEASRVAEQQLRASlwaqEAKATQLQLQLRSTESQL----EALVAEQQPENQAQAQLASLcsvlq 1011
Cdd:PRK04863   353 YQADLEELEERLEEQNEVVEEADEQQEEN----EARAEAAEEEVDELKSQLadyqQALDVQQTRAIQYQQAVQAL----- 423

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1012 qalgsacesrpelrgggDSAPTLWG-PDPDQNGASRLFKRWslptALSPEAVALALQKLHQDVWKARQARDDLrDQVQKL 1090
Cdd:PRK04863   424 -----------------ERAKQLCGlPDLTADNAEDWLEEF----QAKEQEATEELLSLEQKLSVAQAAHSQF-EQAYQL 481

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1091 VQRLTDtEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLeSELRDLHETAASLQSRLRQAELQKMEAQNDRELLQAS 1170
Cdd:PRK04863   482 VRKIAG-EVSRSEAWDVARELLRRLREQRHLAEQLQQLRMRL-SELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQL 559

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1171 KEKLSAQVEHLQACVAEAQAQADAAAVLEEDLRTARSALKLKNEELESERERAQALQEQGELKVAQGKALQENLALLAQT 1250
Cdd:PRK04863   560 QEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLER 639

                          410       420
                   ....*....|....*....|...
gi 1720397337 1251 LSNREREVETLQAEVQELEKQRE 1273
Cdd:PRK04863   640 ERELTVERDELAARKQALDEEIE 662
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 1552-1810 3.24e-03

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 42.68  E-value: 3.24e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1552 LRDKEKEVECQQERIQELQGHMGQLEQQLQGlhrKVGETSLLLTHREQETATLQQHLQEAKEQGELR-EQVLQGQLEEAQ 1630
Cdd:TIGR00927  627 LGDLSKGDVAEAEHTGERTGEEGERPTEAEG---ENGEESGGEAEQEGETETKGENESEGEIPAERKgEQEGEGEIEAKE 703

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1631 RDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATlkERQGELEEHREQVRRLQEELEVEGRQVRALEEVl 1710
Cdd:TIGR00927  704 ADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEG--EAEGKHEVETEGDRKETEHEGETEAEGKEDEDE- 780

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1711 GDLRA-ESREHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQYSRRQEEAAVSQAEALQE 1789
Cdd:TIGR00927  781 GEIQAgEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDG 860

                          250       260
                   ....*....|....*....|.
gi 1720397337 1790 ALSKAQAALQEKEQSLLEQAE 1810
Cdd:TIGR00927  861 GDSEEEEEEEEEEEEEEEEEE 881
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
 627-756 3.47e-03

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 42.51  E-value: 3.47e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  627 IIQAKEVIQGEVkcLKLE-----LDAERTRAEQEWDAVARQLAQAEQEgQASLERQKvaheeevNRLQEKWEKERSWLQQ 701
Cdd:PRK00409   504 IEEAKKLIGEDK--EKLNeliasLEELERELEQKAEEAEALLKEAEKL-KEELEEKK-------EKLQEEEDKLLEEAEK 573

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1720397337  702 ELDKTLETLERERAELETKLREQQTemEAIRAQREEERSQADSALYQMQLETEKE 756
Cdd:PRK00409   574 EAQQAIKEAKKEADEIIKELRQLQK--GGYASVKAHELIEARKRLNKANEKKEKK 626
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1389-1587 3.47e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 42.06  E-value: 3.47e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1389 KVESQQKMITELEGQREMQRVALTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQE 1468
Cdd:COG4942     28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELA 107

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1469 QLAQALERKGQ----ELVLQKERIQVLEDQRTLQTKILEEDLEQIKhSLRERSQELASQWQLVHERADDGKSPSKGQRGS 1544
Cdd:COG4942    108 ELLRALYRLGRqpplALLLSPEDFLDAVRRLQYLKYLAPARREQAE-ELRADLAELAALRAELEAERAELEALLAELEEE 186

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|...
gi 1720397337 1545 LEHLKLILRDKEKEVECQQERIQELQGHMGQLEQQLQGLHRKV 1587
Cdd:COG4942    187 RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALI 229
PRK01156 PRK01156
chromosome segregation protein; Provisional
 264-935 3.50e-03

chromosome segregation protein; Provisional


Pssm-ID: 100796 [Multi-domain]  Cd Length: 895  Bit Score: 42.58  E-value: 3.50e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  264 QGEVDSLTGERDALAGQTVDLQGEVDSLSRERELLQKARGELQQQLEVLEQEAWRLRRMNMELQlqGDSAQGEKLEQQEE 343
Cdd:PRK01156   137 QGEMDSLISGDPAQRKKILDEILEINSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELE--NIKKQIADDEKSHS 214

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  344 LHLavRERERLQETLVGLEAKQ---SESLSELLTLREalESSRLEGELLKQErvevaAALARAEQSIVELSGSENSLKAE 420
Cdd:PRK01156   215 ITL--KEIERLSIEYNNAMDDYnnlKSALNELSSLED--MKNRYESEIKTAE-----SDLSMELEKNNYYKELEERHMKI 285

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  421 VADlrAAAVKLGALNEALALDKveLNQQLLQLEQENQSLCSRVEAAEQLRSALQVDLAEAERRREalweKKTQLETQLQK 500
Cdd:PRK01156   286 IND--PVYKNRNYINDYFKYKN--DIENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKS----RYDDLNNQILE 357

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  501 AEEAGAELQAELRgtreEKEELKDKLSEAHHQQETATAHLEqlhqdaerqeETLARAVQEKEALVRERAALEVRLQAVER 580
Cdd:PRK01156   358 LEGYEMDYNSYLK----SIESLKKKIEEYSKNIERMSAFIS----------EILKIQEIDPDAIKKELNEINVKLQDISS 423

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  581 DRQDLTEHVLGLRSAKEQLESNLfeaqqqnsviqvtkgqlevqiqtiiqakEVIQGEVKCLKLELDAertraeqewdava 660
Cdd:PRK01156   424 KVSSLNQRIRALRENLDELSRNM----------------------------EMLNGQSVCPVCGTTL------------- 462

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  661 rqlaqaeqegqaslerqkvaHEEEVNRLQEKWEKERSWLQQELDKTletlERERAELETKLReQQTEMEAIRAQREEERS 740
Cdd:PRK01156   463 --------------------GEEKSNHIINHYNEKKSRLEEKIREI----EIEVKDIDEKIV-DLKKRKEYLESEEINKS 517

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  741 QAdsalYQMQLETEKERVSLLETLLRTQKELADASQQLERLRQDMKIQKLKEQETTGM-------------LQAQLQETQ 807
Cdd:PRK01156   518 IN----EYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLnalavislidietNRSRSNEIK 593

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  808 QELKEAAQQHRDDLAAFQKDKLDLQKQVEDLMSQLVAHDDSQRLVK------EEIEEKVKVAQECSRIQKELEKENASLA 881
Cdd:PRK01156   594 KQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQenkiliEKLRGKIDNYKKQIAEIDSIIPDLKEIT 673

                          650       660       670       680       690
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1720397337  882 LSLVEKEKRllilqeadsvrqqeLSSLRQDIQEAQEGQRELGVQVELLRQEVKE 935
Cdd:PRK01156   674 SRINDIEDN--------------LKKSRKALDDAKANRARLESTIEILRTRINE 713
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
1040-1374 3.52e-03

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 42.20  E-value: 3.52e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1040 DQNGASRLFKRWSLPTALSPEAVALALQKlhQDVWKARQARDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQ 1119
Cdd:COG4372      2 DRLGEKVGKARLSLFGLRPKTGILIAALS--EQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLE 79

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1120 EEKSKWEGRQNSLESELRDLHETAASLQSRLRQAELQKMEAQNDRELLQASKEKLSAQVEHLQACVAEAqaqadaaavlE 1199
Cdd:COG4372     80 EELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAER----------E 149

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1200 EDLRTARSALKLKNEELES-ERERAQALQEQGELKVAQGKALQENLALLAQTLSNREREVETLQAEVQELEKQREMQKAA 1278
Cdd:COG4372    150 EELKELEEQLESLQEELAAlEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEA 229

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1279 LELLSLDLKKRSREVDLQQEQIQELEQCRSVLEHLPMAVQEREQKLSVQRDQIRELENDREAQRSVLEHQLLDLEQKAQV 1358
Cdd:COG4372    230 KLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSL 309

                          330
                   ....*....|....*.
gi 1720397337 1359 IESQRGQIQDLKKQLG 1374
Cdd:COG4372    310 IGALEDALLAALLELA 325
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 431-652 4.13e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 42.06  E-value: 4.13e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  431 LGALNEALALDKVELNQQLLQLEQENQSLCSRVEAAEQLRSALQVDLAEAERRREALWEKKTQLETQLQKAEEAGAELQA 510
Cdd:COG4942     11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  511 ELRGTREEKEELKDKLSE---AHHQQETATAHLEQLHQ----DAERQEETLARAVQEK----EALVRERAALEVRLQAVE 579
Cdd:COG4942     91 EIAELRAELEAQKEELAEllrALYRLGRQPPLALLLSPedflDAVRRLQYLKYLAPARreqaEELRADLAELAALRAELE 170

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720397337  580 RDRQDLTEHVLGLRSAKEQLESNLFEAQQQNSVIQVTKGQLEVQIQTIIQAKEVIQGEVKCLKLELDAERTRA 652
Cdd:COG4942    171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
46 PHA02562
endonuclease subunit; Provisional
 1420-1660 4.14e-03

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 42.31  E-value: 4.14e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1420 ERSQELQAQSSQLHELEnhsthlakelqerdQEVTSQRQQIDELQKQQEQLAQALERKGQELVLQKERIQVLEDQRTLQT 1499
Cdd:PHA02562   178 ELNQQIQTLDMKIDHIQ--------------QQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDEL 243

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1500 KILEEDLEQIKHSLRERSQELA------SQWQLVHERADDGKS-PSKGQrgslehlklilrdkekEVECQQERIQELQGH 1572
Cdd:PHA02562   244 LNLVMDIEDPSAALNKLNTAAAkikskiEQFQKVIKMYEKGGVcPTCTQ----------------QISEGPDRITKIKDK 307

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1573 MGQLEQQLQGLHRKVGEtsllLTHREQETATLQQHLQEAKEQGELREQVLQG----------QLEEAQRDLAQRDHELET 1642
Cdd:PHA02562   308 LKELQHSLEKLDTAIDE----LEEIMDEFNEQSKKLLELKNKISTNKQSLITlvdkakkvkaAIEELQAEFVDNAEELAK 383

                          250
                   ....*....|....*...
gi 1720397337 1643 LRQEKQQTQDQEESMKLK 1660
Cdd:PHA02562   384 LQDELDKIVKTKSELVKE 401
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
1563-1784 4.27e-03

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 42.31  E-value: 4.27e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1563 QERIQELQGHMGQLEQQLQGLHRKVGETSLllthrEQETATLQQHLQEakeqgelreqvLQGQLEEAQRDLAQRDHELET 1642
Cdd:COG3206    181 EEQLPELRKELEEAEAALEEFRQKNGLVDL-----SEEAKLLLQQLSE-----------LESQLAEARAELAEAEARLAA 244

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1643 LRQekqqtqdqeesmKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLGDLRAESREHEK 1722
Cdd:COG3206    245 LRA------------QLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQ 312

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1723 AVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAE--------NQYSRRQEEAAVSQA 1784
Cdd:COG3206    313 RILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREvevarelyESLLQRLEEARLAEA 382
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
760-1004 4.44e-03

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 41.81  E-value: 4.44e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  760 LLETLLRTQKELADASQQLERLRQDMKIQKLKEQETTGMLQAQLQETQQELKEAAQQH---RDDLAAFQKDKLDLQKQVE 836
Cdd:COG4372      4 LGEKVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELeqlEEELEQARSELEQLEEELE 83

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  837 DLMSQLVAHDDSQRLVKEEIEEKVKVAQECSRIQKELEKENASLALSLVEKEKRLLILQEADSVRQQELSSLRQDIQEAQ 916
Cdd:COG4372     84 ELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQ 163

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  917 EGQRELGVQVELLRQEVKEKEADFVAREAQLLEELEASRVAEQQLRASLWAQEAKATQLQLQLRSTESQLEALVAEQQPE 996
Cdd:COG4372    164 EELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALE 243


                   ....*...
gi 1720397337  997 NQAQAQLA 1004
Cdd:COG4372    244 LEEDKEEL 251
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
 887-1588 4.95e-03

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 42.26  E-value: 4.95e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  887 KEKRLLILQEADSVRQQELSSLRQDIQEAQEGQRE-LGVQVELLRQEVKEKEADFVAREAQLLEELEASRVAEQQLRASL 965
Cdd:TIGR00618  163 KEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAElLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSH 242

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  966 W--AQEAKATQLQLQLRSTESQLEALVAEQQPENQAQAQLASLCSVLQQALGSACESRPELRGGGDSAPTLWGPDPDQNG 1043
Cdd:TIGR00618  243 AylTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRS 322

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1044 ASRLFKRWS--LPTALSPEAVALALQKLHQDVWKARQARD------DLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQL 1115
Cdd:TIGR00618  323 RAKLLMKRAahVKQQSSIEEQRRLLQTLHSQEIHIRDAHEvatsirEISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKEL 402

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1116 SQSQEEKSKWEGRQNSLESELRDLHETAASLQSRLRQAELQKMEAQNDrelLQASKEKLSAQVEHLQACVAEAQAQADAA 1195
Cdd:TIGR00618  403 DILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCT---AQCEKLEKIHLQESAQSLKEREQQLQTKE 479

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1196 AVLEEDLRTARSALKLKNEELESERERAQALQEQGELKVAQG--KALQENLALLAQTLSNREREVETLQAEVQELEKQRE 1273
Cdd:TIGR00618  480 QIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDnpGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRA 559

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1274 MQKAALELLSLDLKKRSREVDLQQEQIQELEQCRSVLEH-LPMAVQEREQKLSVQRDQIRELENDREAQRSVLEHQ---- 1348
Cdd:TIGR00618  560 SLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDlTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQqcsq 639

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1349 -----LLDLEQKAQVIESQRGQIQDL---KKQLGTLECLALELEESHHKVESQQKMITELEGQREMQRVALTHLTLDLEE 1420
Cdd:TIGR00618  640 elalkLTALHALQLTLTQERVREHALsirVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDRE 719

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1421 RSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERKGQELVLQKERIQVLEDQRTLQTK 1500
Cdd:TIGR00618  720 FNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTH 799

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1501 ILEEDLEQIKHSLRERSQELASQWQLVHERADDGKSPSKGQRGSLEHLKLILRDKEKEVECQQERIQElQGHMGQLEQQL 1580
Cdd:TIGR00618  800 LLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQE-QAKIIQLSDKL 878


                   ....*...
gi 1720397337 1581 QGLHRKVG 1588
Cdd:TIGR00618  879 NGINQIKI 886
PRK12705 PRK12705
hypothetical protein; Provisional
 1588-1725 5.50e-03

hypothetical protein; Provisional


Pssm-ID: 237178 [Multi-domain]  Cd Length: 508  Bit Score: 41.62  E-value: 5.50e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1588 GETSLLLTHREQETATLQQHLQEAkeQGELREQVLQGQLEEAQRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQA- 1666
Cdd:PRK12705    19 GVLVVLLKKRQRLAKEAERILQEA--QKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDAr 96

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720397337 1667 ---------ALEQAHATLKERQGELEEHREQVRrlQEELEVEG-RQVRALEEVLGDLRAESrEHEKAVL 1725
Cdd:PRK12705    97 aekldnlenQLEEREKALSARELELEELEKQLD--NELYRVAGlTPEQARKLLLKLLDAEL-EEEKAQR 162
CHASE3 COG5278
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms];
1411-1865 5.58e-03

Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms];


Pssm-ID: 444089 [Multi-domain]  Cd Length: 530  Bit Score: 41.82  E-value: 5.58e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1411 LTHLTLDLEERSQELQAQSSQLHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLAQALERKGQELVLQKERIQV 1490
Cdd:COG5278     71 LTGDESFLEPYEEARAEIDELLAELRSLTADNPEQQARLDELEALIDQWLAELEQVIALRRAGGLEAALALVRSGEGKAL 150

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1491 LEDQRTLQTKILEEDLEQIKHSLRERSQELASQWQLVHERADDGKSPSKGQRGSLEHLKLILRDKEKEVECQQERIQELQ 1570
Cdd:COG5278    151 MDEIRARLLLLALALAALLLAAAALLLLLLALAALLALAELLLLALARALAALLLLLLLEAELAAAAALLAAAAALAALA 230

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1571 GHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQGELREQVLQGQLEEAQRDLAQRDHELETLRQEKQQT 1650
Cdd:COG5278    231 ALELLAALALALALLLAALLLALLAALALAALLAAALLALAALLLALAAAAALAAAAALELAAAEALALAELELELLLAA 310

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1651 QDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLGDLRAESREHEKAVLALQQR 1730
Cdd:COG5278    311 AAAAAAAAAAAAAALAALLALALATALAAAAAALALLAALLAEAAAAAAEEAEAAAEAAAAALAGLAEVEAEGAAEAVEL 390

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1731 CAEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQYSRRQEEAAVSQAEALQEALSKAQAALQEKEQSLLEQAE 1810
Cdd:COG5278    391 EVLAIAAAAAAAAAEAAAAAAAAAAASAAEALELAEALAEALALAEEEALALAAASSELAEAGAALALAAAEALAEELAA 470

                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1720397337 1811 LSHTLEASTAALQATLDTCQASARQLEEALRIREGEIQAQALQHHEVTQHLQQEL 1865
Cdd:COG5278    471 VAALAALAAAAAALAEAEAAAALAAAAALSLALALAALLLAAAEAALAAALAAAL 525
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1702-1941 5.84e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 41.29  E-value: 5.84e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1702 QVRALEEVLGDLRAESREHEKAVLALQQRCAE---QAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQYSRRQEE 1778
Cdd:COG4942     21 AAAEAEAELEQLQQEIAELEKELAALKKEEKAllkQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1779 AavsQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLEEALRIREGEIQAQALQHHEVT 1858
Cdd:COG4942    101 A---QKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1859 QHLQQELCQKKEELRQLLEKAGARRSQENGIQEKQSLEQERQEETRRLLESLKELQLTVAQREEEILMLREASSPRHRAL 1938
Cdd:COG4942    178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGKLPW 257


                   ...
gi 1720397337 1939 PAE 1941
Cdd:COG4942    258 PVS 260
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
1706-2028 6.22e-03

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 41.43  E-value: 6.22e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1706 LEEVLGDLRAESREHEKAVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQYSRRQEEAAVSQAE 1785
Cdd:COG4372      4 LGEKVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELE 83

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1786 ALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLEEALRIREGEIQAQAlqhhEVTQHLQQEL 1865
Cdd:COG4372     84 ELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAERE----EELKELEEQL 159

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1866 CQKKEELRQLlekagarrsqenGIQEKQSLEQERQEETRRLLESLKELQLTVAQREEEILMLREASSPRHRALPAEKPAL 1945
Cdd:COG4372    160 ESLQEELAAL------------EQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSL 227

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1946 QPLPAQQELERLQTALRQTEAREIEWREKAQDLALSLAQSKASISSLQEITMFLQASVLERESEQQRLQEELVLSRQALE 2025
Cdd:COG4372    228 EAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAAL 307


                   ...
gi 1720397337 2026 EQQ 2028
Cdd:COG4372    308 SLI 310
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 1634-1839 6.37e-03

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 41.35  E-value: 6.37e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1634 AQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLGDL 1713
Cdd:COG3883     12 AFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGER 91

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1714 RAESREHEKAVLALQ------------------QRCAEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQYSRR 1775
Cdd:COG3883     92 ARALYRSGGSVSYLDvllgsesfsdfldrlsalSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKA 171

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720397337 1776 QEEAAVSQAEALQEALSKAQAALQEKEQSLLEQAELSHTLEASTAALQATLDTCQASARQLEEA 1839
Cdd:COG3883    172 ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAA 235
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1316-1538 6.59e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 41.29  E-value: 6.59e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1316 AVQEREQKLSVQRDQIRELENDREAQRSVLEHQLLDLEQKAQVIESQRGQIQDLKKQLGTLECLALELEESHHKVESQQK 1395
Cdd:COG4942     21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1396 MITELEGQ--REMQRVALTHLTLDLEERSQELQAQSSQ--LHELENHSTHLAKELQERDQEVTSQRQQIDELQKQQEQLA 1471
Cdd:COG4942    101 AQKEELAEllRALYRLGRQPPLALLLSPEDFLDAVRRLqyLKYLAPARREQAEELRADLAELAALRAELEAERAELEALL 180

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720397337 1472 QALERKGQELVLQKERIQVLEDQRTLQTKILEEDLEQIKHSLRERSQELASQWQLVHERADDGKSPS 1538
Cdd:COG4942    181 AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
PRK09039 PRK09039
peptidoglycan -binding protein;
1078-1220 6.60e-03

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 41.10  E-value: 6.60e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1078 QARDDLRDQVQKLVQRLTDTEAQKSQVHSELQDLQRQLSQSQEEKSKWEGRQNSLESELRDLHETAASLQSRLRQAELQK 1157
Cdd:PRK09039    53 SALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVS 132

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720397337 1158 MEAQNDRELLQASKEKLSAQVEHLQACVAEAQAQADAAAVLEEDL-RTARSALKLKNEELESER 1220
Cdd:PRK09039   133 ARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLgRRLNVALAQRVQELNRYR 196
PRK09039 PRK09039
peptidoglycan -binding protein;
199-344 6.66e-03

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 41.10  E-value: 6.66e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  199 LVQSVL----TRRQQAVQDLRQQLSGCQEAMSFLQQQHDQWEEEGRALREKLQKLTGERDALAGQTVGLQGEVDSLTGER 274
Cdd:PRK09039    39 VAQFFLsreiSGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRA 118

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  275 DALAGQtvdlqgevdsLSRERELLQKARgelqQQLEVLEQEAWRLRRMNMELQLQGDSAQGEKLEQQEEL 344
Cdd:PRK09039   119 GELAQE----------LDSEKQVSARAL----AQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKI 174
PLN03229 PLN03229
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
 693-979 6.68e-03

acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional


Pssm-ID: 178768 [Multi-domain]  Cd Length: 762  Bit Score: 41.76  E-value: 6.68e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  693 EKERSWLQQELDKTlETLERErAELEtKLREQqtemeaIRAQREEERSQADSALYQMQLETEKE----------RVSLLE 762
Cdd:PLN03229   416 ERKVNMKKREAVKT-PVRELE-GEVE-KLKEQ------ILKAKESSSKPSELALNEMIEKLKKEidleyteaviAMGLQE 486

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  763 TLLRTQKELADASQQLERLRQDM--KIQKLKEQETTGMLQA----QLQETQQELKEAaqqHRDDLAAFQKD-----KLDL 831
Cdd:PLN03229   487 RLENLREEFSKANSQDQLMHPVLmeKIEKLKDEFNKRLSRApnylSLKYKLDMLNEF---SRAKALSEKKSkaeklKAEI 563

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  832 QKQVEDLMSQLVAHDDSQRLVKEEIEEKVKVA--------QECSRIQKELEKENAS------LALSLVEKEKRLLILQEA 897
Cdd:PLN03229   564 NKKFKEVMDRPEIKEKMEALKAEVASSGASSGdeldddlkEKVEKMKKEIELELAGvlksmgLEVIGVTKKNKDTAEQTP 643

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  898 DSVRQQELSSLRQDIQEAQE---GQRELGVQVELLRQEVKEKEADFVAREAQLLEELEASrvAEQQLRASLWAQEAKATQ 974
Cdd:PLN03229   644 PPNLQEKIESLNEEINKKIErviRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQ--IKQKIAEALNSSELKEKF 721


                   ....*
gi 1720397337  975 LQLQL 979
Cdd:PLN03229   722 EELEA 726
46 PHA02562
endonuclease subunit; Provisional
 759-956 6.84e-03

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 41.54  E-value: 6.84e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  759 SLLETLLR-TQKELADASQQLERLRQDMKIQK--LKEQE-TTGMLQAQLQETQQELKEAAQQHRDDLAAFQKDKLDLQKQ 834
Cdd:PHA02562   170 KLNKDKIReLNQQIQTLDMKIDHIQQQIKTYNknIEEQRkKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMD 249

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  835 VEDLMSQLVAHDDSQRLVKEEIEEKVKVA------QECSRIQKELEKEN---ASLALSLVEKEKRLLILQEAdsvrQQEL 905
Cdd:PHA02562   250 IEDPSAALNKLNTAAAKIKSKIEQFQKVIkmyekgGVCPTCTQQISEGPdriTKIKDKLKELQHSLEKLDTA----IDEL 325

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1720397337  906 SSLRQDIQEAQEGQRELGVQVELLRQEVK--EKEADFVAREaqlLEELEASRV 956
Cdd:PHA02562   326 EEIMDEFNEQSKKLLELKNKISTNKQSLItlVDKAKKVKAA---IEELQAEFV 375
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
1563-1902 6.85e-03

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 41.04  E-value: 6.85e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1563 QERIQELQGHMGQLEQQLQGLHRKVGETSLLLTHREQETATLQQHLQEAKEQgelrEQVLQGQLEEAQRDLAQRDHELET 1642
Cdd:COG4372     30 SEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEE----LEELNEQLQAAQAELAQAQEELES 105

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1643 LRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELEEHREQVRRLQEELEVEGRQVRALEEVLGDLRAESREHEK 1722
Cdd:COG4372    106 LQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQAL 185

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1723 AVLALQQRCAEQAQEHEAEARTLQDSWLQAQATLTEQEQELAALRAENQYSRRQEEAAVSQAEALQEALSKAQAALQEKE 1802
Cdd:COG4372    186 DELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELEL 265

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1803 QSLLEQAELSHTLEASTAALQATLDTCQASARQLEEALRIREGEIQAQALQHHEVTQHLQQELCQKKEELRQLLEKAGAR 1882
Cdd:COG4372    266 AILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQL 345

                          330       340
                   ....*....|....*....|
gi 1720397337 1883 RSQENGIQEKQSLEQERQEE 1902
Cdd:COG4372    346 LLVGLLDNDVLELLSKGAEA 365
wac PHA02607
fibritin; Provisional
 1389-1591 7.45e-03

fibritin; Provisional


Pssm-ID: 177432 [Multi-domain]  Cd Length: 454  Bit Score: 41.16  E-value: 7.45e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1389 KVESQQKMITELEGQREMQRVAltHLTLDLEERSQELQAQS--------SQLHELENHSTHLAKELQERDQE-------- 1452
Cdd:PHA02607   185 ALVDHGQRITELENDWADSDVG--QLTREVNDLRAELGPSSlatgepiyTRLNTLEDAITGINSDIDEIKTAigfpgtts 262

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1453 ----VTSQRQQIDELQKQQEQLAQALerkgqelvlqKERIQVLEdqrtlqTKILEEDLE-QIKHSLRERSQELASQWQLV 1527
Cdd:PHA02607   263 iitrVTTLESNISSLNNQVNGPVTGI----------KPRLTAIE------TQIGSDSIPgSIKYRISNNTTDISDLNSIV 326

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720397337 1528 heraddGKSPSKGQRGSLEHLKLILRDkEKEVECQQERIQELQGHMGQLEQQLQGLHRKVGETS 1591
Cdd:PHA02607   327 ------GESSSDGLRGEVAWLNQRIGT-DSSPGSINGRLSVVETEVNQLTNSVQDLQVEIGNNS 383
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 569-780 7.76e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 40.90  E-value: 7.76e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  569 AALEVRLQAVERDRQDLTEHVLGLRSAKEQLESNLFEAQQQNSVIQVTKGQLEVQIQTIIQAKEVIQGEVKCLKLELDAE 648
Cdd:COG4942     16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  649 RTRAEQEWDAVARQLAQAEQEGQAS-----LERQKVAHEEEVNRLQEKWEKERSWLQQELDKTLETLERERAELETKLRE 723
Cdd:COG4942     96 RAELEAQKEELAELLRALYRLGRQPplallLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  724 QQTEMEAIRAQR---EEERSQADSALYQMQLETEKERVSlLETLLRTQKELADASQQLER 780
Cdd:COG4942    176 LEALLAELEEERaalEALKAERQKLLARLEKELAELAAE-LAELQQEAEELEALIARLEA 234
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
366-958 8.42e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 41.20  E-value: 8.42e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  366 SESLSELLTLREALESSRLEGELLKQERVEVAAALARAEQSIVELSGSENSLKAEVADLRAAAVKLGALNEALAldkvel 445
Cdd:PRK03918   168 GEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIE------ 241

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  446 nqqllQLEQENQSLCSRVEAAEQLRSALQVDLAEAERRREALWEKKTQLEtQLQKAEEAGAELQAELRGTREEKEELKDK 525
Cdd:PRK03918   242 -----ELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELREIEKR 315

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  526 LSEAHHQQETATAHLEQLHQDAERQEETLaravQEKEALVRERAALEVRLQAVERDRQDLTEhvlgLRSAKEQLESNlfe 605
Cdd:PRK03918   316 LSRLEEEINGIEERIKELEEKEERLEELK----KKLKELEKRLEELEERHELYEEAKAKKEE----LERLKKRLTGL--- 384

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  606 aqqqnsviqvTKGQLEVQIQTIIQAKEVIQGEVKCLKLELdaertraeqewdavaRQLAQAEQEGQASLERQKVAHEEEV 685
Cdd:PRK03918   385 ----------TPEKLEKELEELEKAKEEIEEEISKITARI---------------GELKKEIKELKKAIEELKKAKGKCP 439

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  686 NRLQEKWEKERSWLQQELDKTLETLERERAELETKLREQQTEMEAIRAQREEERSqadsalyqmqletekervslletlL 765
Cdd:PRK03918   440 VCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESE------------------------L 495

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  766 RTQKELADasqQLERLRQDMKIQKLKEQETTGMLQAQLQETQQELKEAAQQHRDDL---AAFQKDKLDLQKQVEDLMSQL 842
Cdd:PRK03918   496 IKLKELAE---QLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELeklEELKKKLAELEKKLDELEEEL 572

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  843 vahddsQRLVKEEIEEKVKVAQECSRIQKELEKENASLaLSLVEKEKRLLILQEADSVRQQELSSLRQDIQEAQEGQREL 922
Cdd:PRK03918   573 ------AELLKELEELGFESVEELEERLKELEPFYNEY-LELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEEL 645

                          570       580       590
                   ....*....|....*....|....*....|....*.
gi 1720397337  923 GVQVELLRQEVKEKEADFVAREAQLLEELEASRVAE 958
Cdd:PRK03918   646 RKELEELEKKYSEEEYEELREEYLELSRELAGLRAE 681
PTZ00491 PTZ00491
major vault protein; Provisional
 1609-1741 8.93e-03

major vault protein; Provisional


Pssm-ID: 240439 [Multi-domain]  Cd Length: 850  Bit Score: 41.16  E-value: 8.93e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337 1609 QEAKEQGELREQVLQGQLEeaqRDLAQRDHELETLRQEKQQTQDQEESMKLKTSALQAALEQAHATLKERQGELE--EHR 1686
Cdd:PTZ00491   666 AAARHQAELLEQEARGRLE---RQKMHDKAKAEEQRTKLLELQAESAAVESSGQSRAEALAEAEARLIEAEAEVEqaELR 742

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1720397337 1687 EQVRRLQEELEVEGRQVRALEEVlgdlraesrEHEKAVLALQQRCAEQAQEHEAE 1741
Cdd:PTZ00491   743 AKALRIEAEAELEKLRKRQELEL---------EYEQAQNELEIAKAKELADIEAT 788
COG5283 COG5283
Phage-related tail protein [Mobilome: prophages, transposons];
471-572 8.93e-03

Phage-related tail protein [Mobilome: prophages, transposons];


Pssm-ID: 444094 [Multi-domain]  Cd Length: 747  Bit Score: 41.38  E-value: 8.93e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720397337  471 SALQVDLAEAERRREALWEKKTQLET-------QLQKAEEAGAELQAELRGTREEKEELKDKLSEAHHQQETATAHLEQL 543
Cdd:COG5283     10 KPFKSALESAKQRVAALAQALKALEAptralarALERAKQAAARLQTKYNKLRQSLQRLRQALDQAGIDTRQLSAAQRRL 89

                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 1720397337  544 HQDAE-------RQEETLARAVQEKEALVRERAALE 572
Cdd:COG5283     90 RSSLEqtnrqleRQQQRLARLGARQDRLKAARARLQ 125
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH