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Conserved domains on  [gi|1663487543|ref|XP_029142922|]
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leucine-rich repeat transmembrane protein FLRT1-like, partial [Protobothrops mucrosquamatus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PPP1R42 super family cl42388
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 8-89 2.26e-09

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


The actual alignment was detected with superfamily member cd21340:

Pssm-ID: 455733 [Multi-domain]  Cd Length: 220  Bit Score: 55.18  E-value: 2.26e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1663487543   8 LRNVKQLKMASNHLKALPPLGPMGLLKELDLSRNKISSLENLEaaSLPSLTTLKLQGNLLETIPtgHFDPLGKLTALHLG 87
Cdd:cd21340     1 LKRITHLYLNDKNITKIDNLSLCKNLKVLYLYDNKITKIENLE--FLTNLTHLYLQNNQIEKIE--NLENLVNLKKLYLG 76


                  ..
gi 1663487543  88 DN 89
Cdd:cd21340    77 GN 78
LRRCT smart00082
Leucine rich repeat C-terminal domain;
89-136 3.18e-06

Leucine rich repeat C-terminal domain;


:

Pssm-ID: 214507 [Multi-domain]  Cd Length: 51  Bit Score: 42.80  E-value: 3.18e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 1663487543   89 NPWRCDCRLLYLHQWIHNNaKIIKDARKIICRSPEDLAGKAVSSLSED 136
Cdd:smart00082   1 NPFICDCELRWLLRWLQAN-EHLQDPVDLRCASPSSLRGPLLELLHSE 47
 
Name Accession Description Interval E-value
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 8-89 2.26e-09

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 55.18  E-value: 2.26e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1663487543   8 LRNVKQLKMASNHLKALPPLGPMGLLKELDLSRNKISSLENLEaaSLPSLTTLKLQGNLLETIPtgHFDPLGKLTALHLG 87
Cdd:cd21340     1 LKRITHLYLNDKNITKIDNLSLCKNLKVLYLYDNKITKIENLE--FLTNLTHLYLQNNQIEKIE--NLENLVNLKKLYLG 76


                  ..
gi 1663487543  88 DN 89
Cdd:cd21340    77 GN 78
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
5-89 2.35e-08

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 53.01  E-value: 2.35e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1663487543   5 FRGLRNVKQLKMASNHLKALP-PLGPMGLLKELDLSRNKISSLENlEAASLPSLTTLKLQGNLLETIPTGhFDPLGKLTA 83
Cdd:COG4886   155 LGNLTNLKSLDLSNNQLTDLPeELGNLTNLKELDLSNNQITDLPE-PLGNLTNLEELDLSGNQLTDLPEP-LANLTNLET 232


                  ....*.
gi 1663487543  84 LHLGDN 89
Cdd:COG4886   233 LDLSNN 238
LRR_8 pfam13855
Leucine rich repeat;
33-90 4.02e-08

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 48.29  E-value: 4.02e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1663487543  33 LKELDLSRNKISSLENLEAASLPSLTTLKLQGNLLETIPTGHFDPLGKLTALHLGDNP 90
Cdd:pfam13855   3 LRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNR 60
LRRCT smart00082
Leucine rich repeat C-terminal domain;
89-136 3.18e-06

Leucine rich repeat C-terminal domain;


Pssm-ID: 214507 [Multi-domain]  Cd Length: 51  Bit Score: 42.80  E-value: 3.18e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 1663487543   89 NPWRCDCRLLYLHQWIHNNaKIIKDARKIICRSPEDLAGKAVSSLSED 136
Cdd:smart00082   1 NPFICDCELRWLLRWLQAN-EHLQDPVDLRCASPSSLRGPLLELLHSE 47
PCC TIGR00864
polycystin cation channel protein; The Polycystin Cation Channel (PCC) Family (TC 1.A.5) ...
 62-134 8.13e-06

polycystin cation channel protein; The Polycystin Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a huge protein of 4303aas. Its repeated leucine-rich (LRR) segment is found in many proteins. It contains 16 polycystic kidney disease (PKD) domains, one LDL-receptor class A domain, one C-type lectin family domain, and 16-18 putative TMSs in positions between residues 2200 and 4100. Polycystin-L has been shown to be a cation (Na+, K+ and Ca2+) channel that is activated by Ca2+. Two members of the PCC family (polycystin 1 and 2) are mutated in autosomal dominant polycystic kidney disease, and polycystin-L is deleted in mice with renal and retinal defects. Note: this model is restricted to the amino half.


Pssm-ID: 188093 [Multi-domain]  Cd Length: 2740  Bit Score: 45.84  E-value: 8.13e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1663487543   62 LQGNLLETIPTGHFDPLGKLTALHLGDNPWRCDCRLLYLHQWIHNNAKIIKDARKIICRSPEDLAGKAVSSLS 134
Cdd:TIGR00864    2 ISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLLGIP 74
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 1-84 4.78e-05

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 43.30  E-value: 4.78e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1663487543   1 PDEIFRGLRNVKQLKMASNHLKALPPLGPMGLLKELDLSRNKISSLENLEAASLPSLTTLKLQGNLLetipTGHFDP-LG 79
Cdd:PLN00113  110 PDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL----VGKIPNsLT 185


                  ....*
gi 1663487543  80 KLTAL 84
Cdd:PLN00113  186 NLTSL 190
 
Name Accession Description Interval E-value
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 8-89 2.26e-09

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 55.18  E-value: 2.26e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1663487543   8 LRNVKQLKMASNHLKALPPLGPMGLLKELDLSRNKISSLENLEaaSLPSLTTLKLQGNLLETIPtgHFDPLGKLTALHLG 87
Cdd:cd21340     1 LKRITHLYLNDKNITKIDNLSLCKNLKVLYLYDNKITKIENLE--FLTNLTHLYLQNNQIEKIE--NLENLVNLKKLYLG 76


                  ..
gi 1663487543  88 DN 89
Cdd:cd21340    77 GN 78
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
5-89 2.35e-08

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 53.01  E-value: 2.35e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1663487543   5 FRGLRNVKQLKMASNHLKALP-PLGPMGLLKELDLSRNKISSLENlEAASLPSLTTLKLQGNLLETIPTGhFDPLGKLTA 83
Cdd:COG4886   155 LGNLTNLKSLDLSNNQLTDLPeELGNLTNLKELDLSNNQITDLPE-PLGNLTNLEELDLSGNQLTDLPEP-LANLTNLET 232


                  ....*.
gi 1663487543  84 LHLGDN 89
Cdd:COG4886   233 LDLSNN 238
LRR_8 pfam13855
Leucine rich repeat;
33-90 4.02e-08

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 48.29  E-value: 4.02e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1663487543  33 LKELDLSRNKISSLENLEAASLPSLTTLKLQGNLLETIPTGHFDPLGKLTALHLGDNP 90
Cdd:pfam13855   3 LRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNR 60
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
5-111 6.46e-07

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 48.78  E-value: 6.46e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1663487543   5 FRGLRNVKQLKMASNHLKALPPLGPMGLLKELDLSRNKISSLENLeaASLPSLTTLKLQGNLLETIPTGHFDPLGKLTAL 84
Cdd:COG4886   224 LANLTNLETLDLSNNQLTDLPELGNLTNLEELDLSNNQLTDLPPL--ANLTNLKTLDLSNNQLTDLKLKELELLLGLNSL 301

                          90       100
                  ....*....|....*....|....*..
gi 1663487543  85 HLGDNPWRCDCRLLYLHQWIHNNAKII 111
Cdd:COG4886   302 LLLLLLLNLLELLILLLLLTTLLLLLL 328
LRR_8 pfam13855
Leucine rich repeat;
9-67 1.43e-06

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 44.05  E-value: 1.43e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1663487543   9 RNVKQLKMASNHLKALPPLGPMGL--LKELDLSRNKISSLENLEAASLPSLTTLKLQGNLL 67
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKGLsnLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 14-71 1.70e-06

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 46.70  E-value: 1.70e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1663487543  14 LKMASNHLKALPPLGPMGLLKELDLSRNKISSLENLEAA--SLPSLTTLKLQGNLLETIP 71
Cdd:cd21340   125 LNISGNNIDSLEPLAPLRNLEQLDASNNQISDLEELLDLlsSWPSLRELDLTGNPVCKKP 184
LRRCT smart00082
Leucine rich repeat C-terminal domain;
89-136 3.18e-06

Leucine rich repeat C-terminal domain;


Pssm-ID: 214507 [Multi-domain]  Cd Length: 51  Bit Score: 42.80  E-value: 3.18e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 1663487543   89 NPWRCDCRLLYLHQWIHNNaKIIKDARKIICRSPEDLAGKAVSSLSED 136
Cdd:smart00082   1 NPFICDCELRWLLRWLQAN-EHLQDPVDLRCASPSSLRGPLLELLHSE 47
PCC TIGR00864
polycystin cation channel protein; The Polycystin Cation Channel (PCC) Family (TC 1.A.5) ...
 62-134 8.13e-06

polycystin cation channel protein; The Polycystin Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a huge protein of 4303aas. Its repeated leucine-rich (LRR) segment is found in many proteins. It contains 16 polycystic kidney disease (PKD) domains, one LDL-receptor class A domain, one C-type lectin family domain, and 16-18 putative TMSs in positions between residues 2200 and 4100. Polycystin-L has been shown to be a cation (Na+, K+ and Ca2+) channel that is activated by Ca2+. Two members of the PCC family (polycystin 1 and 2) are mutated in autosomal dominant polycystic kidney disease, and polycystin-L is deleted in mice with renal and retinal defects. Note: this model is restricted to the amino half.


Pssm-ID: 188093 [Multi-domain]  Cd Length: 2740  Bit Score: 45.84  E-value: 8.13e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1663487543   62 LQGNLLETIPTGHFDPLGKLTALHLGDNPWRCDCRLLYLHQWIHNNAKIIKDARKIICRSPEDLAGKAVSSLS 134
Cdd:TIGR00864    2 ISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLLGIP 74
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 3-88 2.36e-05

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 43.62  E-value: 2.36e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1663487543   3 EIFRGLRNVKQLKMASNHLKALPPLGPMGLLKELDLSRNKISSLENLEaaSLPSLTTLKLQGNLLETIptGHFDPLGKLT 82
Cdd:cd21340    18 DNLSLCKNLKVLYLYDNKITKIENLEFLTNLTHLYLQNNQIEKIENLE--NLVNLKKLYLGGNRISVV--EGLENLTNLE 93


                  ....*.
gi 1663487543  83 ALHLGD 88
Cdd:cd21340    94 ELHIEN 99
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
1-89 2.90e-05

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 43.77  E-value: 2.90e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1663487543   1 PDEIFRGLRNVKQLKMASNhlkalPPLGPMGLLKELDLSRNKISSLENlEAASLPSLTTLKLQGNLLETIPTGhFDPLGK 80
Cdd:COG4886    88 GLTDLGDLTNLTELDLSGN-----EELSNLTNLESLDLSGNQLTDLPE-ELANLTNLKELDLSNNQLTDLPEP-LGNLTN 160


                  ....*....
gi 1663487543  81 LTALHLGDN 89
Cdd:COG4886   161 LKSLDLSNN 169
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 1-84 4.78e-05

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 43.30  E-value: 4.78e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1663487543   1 PDEIFRGLRNVKQLKMASNHLKALPPLGPMGLLKELDLSRNKISSLENLEAASLPSLTTLKLQGNLLetipTGHFDP-LG 79
Cdd:PLN00113  110 PDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL----VGKIPNsLT 185


                  ....*
gi 1663487543  80 KLTAL 84
Cdd:PLN00113  186 NLTSL 190
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 8-77 6.31e-04

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 39.38  E-value: 6.31e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1663487543   8 LRNVKQLKMASNHLKALPPLGPMGLLKELDLSRNKISSLENLEaaSLPSLTTLKLQGNlleTIPTGH---FDP 77
Cdd:cd21340    45 LTNLTHLYLQNNQIEKIENLENLVNLKKLYLGGNRISVVEGLE--NLTNLEELHIENQ---RLPPGEkltFDP 112
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 33-65 1.30e-03

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 35.30  E-value: 1.30e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1663487543  33 LKELDLSRNKISSLENLEaaSLPSLTTLKLQGN 65
Cdd:pfam12799   3 LEVLDLSNNQITDIPPLA--KLPNLETLDLSGN 33
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 33-90 1.69e-03

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 38.23  E-value: 1.69e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1663487543  33 LKELDLSRNKISSLENLeaASLPSLTTLKLQGNLLETIP--TGHFDPLGKLTALHLGDNP 90
Cdd:cd21340   122 LRVLNISGNNIDSLEPL--APLRNLEQLDASNNQISDLEelLDLLSSWPSLRELDLTGNP 179
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
5-89 3.10e-03

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 37.61  E-value: 3.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1663487543   5 FRGLRNVKQLKMASNHLKALPPLGPMGLLKELDLSRNKISSLENLEAASLPSLTTLKLQGNLLETIPTGHFDPLGKLTAL 84
Cdd:COG4886   246 LGNLTNLEELDLSNNQLTDLPPLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLL 325


                  ....*
gi 1663487543  85 HLGDN 89
Cdd:COG4886   326 LLLLL 330
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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