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Conserved domains on  [gi|1622856821|ref|XP_028687845|]
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trafficking protein particle complex subunit 12 isoform X5 [Macaca mulatta]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 35-319 3.38e-06

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.71  E-value: 3.38e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821   35 RWSRPQVTPFP-QPQWAGGRGMEDAGGGEETPAPEAPHPPQLAPPEEQGLLFHEEtidlGGDEFGSEENETASEGSSPLA 113
Cdd:PHA03247  2585 RARRPDAPPQSaRPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPD----PHPPPTVPPPERPRDDPAPGR 2660

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821  114 DKLNEHMMESVLISDSPNNSEG--------DAGDLGRAREEAEPGGEGDPGPEPAS--TPSPTGEVHGDCAPEDAPEDAA 183
Cdd:PHA03247  2661 VSRPRRARRLGRAAQASSPPQRprrraarpTVGSLTSLADPPPPPPTPEPAPHALVsaTPLPPGPAAARQASPALPAAPA 2740

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821  184 PRSGGA----PRQDAAREAPGSEAARPEQEPPAAEPVPVctifSQRAPPAPRDGFEPQMVKSPSFGGASEAPARTP---- 255
Cdd:PHA03247  2741 PPAVPAgpatPGGPARPARPPTTAGPPAPAPPAAPAAGP----PRRLTRPAVASLSESRESLPSPWDPADPPAAVLapaa 2816

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622856821  256 --PQAVQPSPSLSTFFGDAAASHSLASDFF-DSFTTSAFVSVSNPGAGSPASASPPPvsVPGTEGRP 319
Cdd:PHA03247  2817 alPPAASPAGPLPPPTSAQPTAPPPPPGPPpPSLPLGGSVAPGGDVRRRPPSRSPAA--KPAAPARP 2881
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
 35-319 3.38e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.71  E-value: 3.38e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821   35 RWSRPQVTPFP-QPQWAGGRGMEDAGGGEETPAPEAPHPPQLAPPEEQGLLFHEEtidlGGDEFGSEENETASEGSSPLA 113
Cdd:PHA03247  2585 RARRPDAPPQSaRPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPD----PHPPPTVPPPERPRDDPAPGR 2660

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821  114 DKLNEHMMESVLISDSPNNSEG--------DAGDLGRAREEAEPGGEGDPGPEPAS--TPSPTGEVHGDCAPEDAPEDAA 183
Cdd:PHA03247  2661 VSRPRRARRLGRAAQASSPPQRprrraarpTVGSLTSLADPPPPPPTPEPAPHALVsaTPLPPGPAAARQASPALPAAPA 2740

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821  184 PRSGGA----PRQDAAREAPGSEAARPEQEPPAAEPVPVctifSQRAPPAPRDGFEPQMVKSPSFGGASEAPARTP---- 255
Cdd:PHA03247  2741 PPAVPAgpatPGGPARPARPPTTAGPPAPAPPAAPAAGP----PRRLTRPAVASLSESRESLPSPWDPADPPAAVLapaa 2816

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622856821  256 --PQAVQPSPSLSTFFGDAAASHSLASDFF-DSFTTSAFVSVSNPGAGSPASASPPPvsVPGTEGRP 319
Cdd:PHA03247  2817 alPPAASPAGPLPPPTSAQPTAPPPPPGPPpPSLPLGGSVAPGGDVRRRPPSRSPAA--KPAAPARP 2881
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 156-323 6.24e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 42.98  E-value: 6.24e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 156 GPEpASTPSPTGEVHGDCAPEDApeDAAPRSGGAPRQDAAREAPGSEAARPEQEPPAaePVPVCTIFSQRAP-PAPRD-G 233
Cdd:pfam05109 424 APE-STTTSPTLNTTGFAAPNTT--TGLPSSTHVPTNLTAPASTGPTVSTADVTSPT--PAGTTSGASPVTPsPSPRDnG 498

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 234 FEPqmvKSPSFGGASEAPARTPPQAVQPSPSLSTFFGDaAASHSLASdffDSFTTSAFVSVSNPGAGSPASASPPPVSVP 313
Cdd:pfam05109 499 TES---KAPDMTSPTSAVTTPTPNATSPTPAVTTPTPN-ATSPTLGK---TSPTSAVTTPTPNATSPTPAVTTPTPNATI 571

                         170
                  ....*....|
gi 1622856821 314 GTEGRPEPAA 323
Cdd:pfam05109 572 PTLGKTSPTS 581
KREPA2 cd23959
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ...
 141-308 5.83e-03

Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex.


Pssm-ID: 467780 [Multi-domain]  Cd Length: 424  Bit Score: 39.47  E-value: 5.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 141 GRAREEAEPGGEGdPGPEPASTPSPTGEVHGDCAP--EDAPEDAAPRSGGAPRQDAAREAPGSEAARPEQEPPAAEPVPV 218
Cdd:cd23959    59 GAVSPEGENPFDG-PGLVTASTVSDCYVGNANFYEvdMSDAFAMAPDESLGPFRAARVPNPFSASSSTQRETHKTAQVAP 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 219 cTIFSQRAPPAPRDGfepqmvKSPSFGGASEAPARTPPQAV-QPSPSLSTFFGDAAASHSLASDFFDSFTTSAFVSVSNP 297
Cdd:cd23959   138 -PKAEPQTAPVTPFG------QLPMFGQHPPPAKPLPAAAAaQQSSASPGEVASPFASGTVSASPFATATDTAPSSGAPD 210

                         170
                  ....*....|.
gi 1622856821 298 GAGSPASASPP 308
Cdd:cd23959   211 GFPAEASAPSP 221
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
 35-319 3.38e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.71  E-value: 3.38e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821   35 RWSRPQVTPFP-QPQWAGGRGMEDAGGGEETPAPEAPHPPQLAPPEEQGLLFHEEtidlGGDEFGSEENETASEGSSPLA 113
Cdd:PHA03247  2585 RARRPDAPPQSaRPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPD----PHPPPTVPPPERPRDDPAPGR 2660

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821  114 DKLNEHMMESVLISDSPNNSEG--------DAGDLGRAREEAEPGGEGDPGPEPAS--TPSPTGEVHGDCAPEDAPEDAA 183
Cdd:PHA03247  2661 VSRPRRARRLGRAAQASSPPQRprrraarpTVGSLTSLADPPPPPPTPEPAPHALVsaTPLPPGPAAARQASPALPAAPA 2740

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821  184 PRSGGA----PRQDAAREAPGSEAARPEQEPPAAEPVPVctifSQRAPPAPRDGFEPQMVKSPSFGGASEAPARTP---- 255
Cdd:PHA03247  2741 PPAVPAgpatPGGPARPARPPTTAGPPAPAPPAAPAAGP----PRRLTRPAVASLSESRESLPSPWDPADPPAAVLapaa 2816

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622856821  256 --PQAVQPSPSLSTFFGDAAASHSLASDFF-DSFTTSAFVSVSNPGAGSPASASPPPvsVPGTEGRP 319
Cdd:PHA03247  2817 alPPAASPAGPLPPPTSAQPTAPPPPPGPPpPSLPLGGSVAPGGDVRRRPPSRSPAA--KPAAPARP 2881
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 143-265 4.07e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 49.98  E-value: 4.07e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 143 AREEAEPGGEGDPGPEPASTPSPTGEVHGDCAPEDAPEDAAPRSGGAPRQdAAREAPGSEAARPEQEPPAAEPVPVCTIF 222
Cdd:PRK07764  376 ARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAP-AAAPQPAPAPAPAPAPPSPAGNAPAGGAP 454

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1622856821 223 SQR------APPAPRDGFEPQMVK----SPSFGGASEAPARTPPQAVQPSPSL 265
Cdd:PRK07764  455 SPPpaaapsAQPAPAPAAAPEPTAapapAPPAAPAPAAAPAAPAAPAAPAGAD 507
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
147-325 1.22e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 48.69  E-value: 1.22e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 147 AEPGGEGDPGPEPASTPSPTGevhgdcAPEDAPEDAAPRSGGAPRQDAAREAPGSEAARPEQEPPAAEPVPVCTIFSQRA 226
Cdd:PRK07003  430 PAPPATADRGDDAADGDAPVP------AKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAAT 503

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 227 PPAPRDGFEPQMVKSPSfggASEAPARTPPQAVQPSPSLSTffgdAAASHSLASDFFDSFtTSAFVSVSNPGAGSPASAS 306
Cdd:PRK07003  504 PAAVPDARAPAAASRED---APAAAAPPAPEARPPTPAAAA----PAARAGGAAAALDVL-RNAGMRVSSDRGARAAAAA 575

                         170
                  ....*....|....*....
gi 1622856821 307 PPPVSVPGTegrPEPAAMR 325
Cdd:PRK07003  576 KPAAAPAAA---PKPAAPR 591
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
141-325 1.28e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 48.31  E-value: 1.28e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 141 GRAREEAEPGGEGDPGPEPASTP-----SPTGEVHGDCAPEDAPEDAAPRSGGAPRQDAAREAPGseAARPEQEPPAAEP 215
Cdd:PRK07003  369 GGGVPARVAGAVPAPGARAAAAVgasavPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPP--ATADRGDDAADGD 446

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 216 VPVCTIFSQRAPPAPRDGFEPQMVKSPSFGGASEAPARTPPQAVQPSPSlstffGDAAAShslasdffdsfTTSAFVSVS 295
Cdd:PRK07003  447 APVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPR-----AAAPSA-----------ATPAAVPDA 510

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1622856821 296 NPGAGSPASASPPPVSVPGTEGR-PEPAAMR 325
Cdd:PRK07003  511 RAPAAASREDAPAAAAPPAPEARpPTPAAAA 541
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 127-264 1.51e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 48.06  E-value: 1.51e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 127 SDSPNNSEGDAGDLGRAREEAEPGGEGDPGPEPASTPSPTGEVHGDCAPEDAPEDAAPRSGGAPRQDAAREAPGSEAARP 206
Cdd:PRK07764  640 SAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAA 719

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1622856821 207 EQEPPAAEPVPVCTIFSQRAPPAPRDGFEPQMVKSPSFGGASEAPARTPPQAVQPSPS 264
Cdd:PRK07764  720 QPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPS 777
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 50-261 1.97e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 47.67  E-value: 1.97e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821  50 AGGRGMEDAGGGEETPAPEAPHPPQLAPPEEQGllfheetidlggdefGSEENETASEGSSPLADKLNEHMMESVLISDS 129
Cdd:PRK07764  593 GAAGGEGPPAPASSGPPEEAARPAAPAAPAAPA---------------APAPAGAAAAPAEASAAPAPGVAAPEHHPKHV 657

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 130 PNNSEGDAGDLGRAREEAEPGGEGDPGPEPASTPSPTGEVHGDCAPEDAPEDAAPRSGGA------PRQDAAREAPGSEA 203
Cdd:PRK07764  658 AVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPaaqppqAAQGASAPSPAADD 737

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1622856821 204 ARPEQEPPAAEPVPVCTIFSQRAPPAPRDGFEPQMVKSPSFGGASEAPARTPPQAVQP 261
Cdd:PRK07764  738 PVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDD 795
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
150-385 2.84e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 47.18  E-value: 2.84e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 150 GGEGDPGPEPASTPSPTGEVHGDCAPEDAPEDAAPRSGGAPRQDAAREAPGSEAARPEQEPPAAEPVPVCTIFSQRAPPA 229
Cdd:PRK12323  367 QSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGG 446

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 230 pRDGFEPQMVKSPSFGGASEAPARTPPQAVQPSPSLSTffGDAAASHSLASDFFDSFTTSAFVSVSNPGAGSPASASPPP 309
Cdd:PRK12323  447 -APAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARA--APAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVA 523

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622856821 310 VSVPGTEGRPEPAAMRGPQAAAPPASPEPFAHIQAVFAGSDDPFATALSMSEMdrrNDAWLPGEATRGVLRAVAAQ 385
Cdd:PRK12323  524 ESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDM---FDGDWPALAARLPVRGLAQQ 596
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 129-376 4.09e-05

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 46.99  E-value: 4.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 129 SPNNSEGDAGDLGRAREEAEPGGEGDPG----------PEPASTPSPTGEVHGDCAPEDAPEDAAPRSGGAPRQDAAREA 198
Cdd:PTZ00449  523 APGDKEGEEGEHEDSKESDEPKEGGKPGetkegevgkkPGPAKEHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRS 602

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 199 PGSEAARPEQEPPAAEPVP-----VCTIFSQRAPPAPRDGFEPQMVKSPSFGGASEAPaRTPPQAVQPS--PSLSTFFGD 271
Cdd:PTZ00449  603 AQRPTRPKSPKLPELLDIPkspkrPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPP-KSPKPPFDPKfkEKFYDDYLD 681

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 272 AAA--SHSLASDFFDSFTTSAFVSVSNPGAGSPASASPP-PVSVPGTEGRP-----EPAAMRGPQAAAPPASPEPFAHIQ 343
Cdd:PTZ00449  682 AAAksKETKTTVVLDESFESILKETLPETPGTPFTTPRPlPPKLPRDEEFPfepigDPDAEQPDDIEFFTPPEEERTFFH 761

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1622856821 344 AVFAGSDDPFATALSMSEMDRRNDAWLPGEATR 376
Cdd:PTZ00449  762 ETPADTPLPDILAEEFKEEDIHAETGEPDEAMK 794
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 143-323 4.67e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.52  E-value: 4.67e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 143 AREEAEPGGEGDPGPEPASTPSPTGEVHGDCAPEDAPEDAAPRSGGAPrqdAAREAPGSEAARPEQEPPAAEPVPVctif 222
Cdd:PRK07764  613 ARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVP---DASDGGDGWPAKAGGAAPAAPPPAP---- 685

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 223 SQRAPPAPRDGFEPQmvkspsfgGASEAPARTPPQAVQPSPSLSTFFGDAAASHSLASDffdsFTTSAFVSVSNPGAGSP 302
Cdd:PRK07764  686 APAAPAAPAGAAPAQ--------PAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAAD----DPVPLPPEPDDPPDPAG 753

                         170       180
                  ....*....|....*....|.
gi 1622856821 303 ASASPPPVSVPGTEGRPEPAA 323
Cdd:PRK07764  754 APAQPPPPPAPAPAAAPAAAP 774
PHA03247 PHA03247
large tegument protein UL36; Provisional
 155-323 4.91e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.86  E-value: 4.91e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821  155 PGPEPASTPSPTGEVHGDCAPEDAPEDAAP-------------RSGGA------PRQDAAREAPGSEA--ARPEQEPPAA 213
Cdd:PHA03247  2629 PSPSPAANEPDPHPPPTVPPPERPRDDPAPgrvsrprrarrlgRAAQAssppqrPRRRAARPTVGSLTslADPPPPPPTP 2708

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821  214 EPVPVCTIFS-----------QRAPPAPRDGFEPQMVKSPSFGGASEAPARTPPQAVQPSPS-----------LSTFFGD 271
Cdd:PHA03247  2709 EPAPHALVSAtplppgpaaarQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAppaapaagpprRLTRPAV 2788

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1622856821  272 AAASHSLASDFFDSFTTSAFVSVSNPGAGSPASASPPPVSVPGTEGRPEPAA 323
Cdd:PHA03247  2789 ASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPP 2840
PHA03169 PHA03169
hypothetical protein; Provisional
 51-217 7.16e-05

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 45.73  E-value: 7.16e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821  51 GGRGMEDAGGGEETPAPEAPHPPQLAPPEEQGLlfheetidlGGDEFGSEENETASEGSSPladklNEHMMESVLISDSP 130
Cdd:PHA03169   93 SGSGSESVGSPTPSPSGSAEELASGLSPENTSG---------SSPESPASHSPPPSPPSHP-----GPHEPAPPESHNPS 158

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 131 NNSEGDAGDLGRAREEAEPGGEGDPGPEPASTPSPTGEVHGDCAPEDAP--EDAAPRSGGAPRQDAAREAPGSEAARPEQ 208
Cdd:PHA03169  159 PNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPpdEPGEPQSPTPQQAPSPNTQQAVEHEDEPT 238


                  ....*....
gi 1622856821 209 EPPAAEPVP 217
Cdd:PHA03169  239 EPEREGPPF 247
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
142-323 9.19e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 45.64  E-value: 9.19e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 142 RAREEAEPGGEGDPGPEPASTPSPTGEVHGDcAPEDAPEDAAPRSGGAPRQDAAREAPGseAARPEQEPPAAePVPVCTI 221
Cdd:PRK12323  389 AAAPAAAAPAPAAPPAAPAAAPAAAAAARAV-AAAPARRSPAPEALAAARQASARGPGG--APAPAPAPAAA-PAAAARP 464

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 222 FSQRAPPAPRDGFEPQMVKSPSfGGASEAPARTPPQAVQPS--PSLSTFFGDAAASHSLASDFFDSFTTSAfvsvsnPGA 299
Cdd:PRK12323  465 AAAGPRPVAAAAAAAPARAAPA-AAPAPADDDPPPWEELPPefASPAPAQPDAAPAGWVAESIPDPATADP------DDA 537

                         170       180
                  ....*....|....*....|....
gi 1622856821 300 GSPASASPPPVSVPGTEGRPEPAA 323
Cdd:PRK12323  538 FETLAPAPAAAPAPRAAAATEPVV 561
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
140-264 9.27e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 45.64  E-value: 9.27e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 140 LGRAREEAEPGGEGDPGPEPASTPSPTGEVHGDCAPEDAPEDAAPrSGGAPRQDAAREAPGSEAARPEQEPPAAEPVPvc 219
Cdd:PRK12323  433 LAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAA-AAPARAAPAAAPAPADDDPPPWEELPPEFASP-- 509

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1622856821 220 tifsqrAPPAPRDGFEPQMVKSPSFGGASEAPARTPPQAVQPSPS 264
Cdd:PRK12323  510 ------APAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAA 548
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 129-297 1.58e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 44.67  E-value: 1.58e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 129 SPNNSEGDAGDLGRAREEAEPGGEGDPGPEPASTPSPTGEVHGDCAPEDAPE---------DAAPRSGGAPRQDAAREAP 199
Cdd:PRK14959  380 APSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSprvpwddapPAPPRSGIPPRPAPRMPEA 459

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 200 GSEAARPEQEPPAAEPVPVCTIFSQRAPPAPR-----DGFEPQMVKSPSFGGASEAPAR-TPPQAVQPSPSLSTF----- 268
Cdd:PRK14959  460 SPVPGAPDSVASASDAPPTLGDPSDTAEHTPSgprtwDGFLEFCQGRNGQGGRLATVLRqATPEHADGRLRLATMssvqy 539

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1622856821 269 --FGDAAASHSLASDFFDSFTTSAFVSVSNP 297
Cdd:PRK14959  540 erLTDAATETTLAGLVRDYFGDACRVEVLPP 570
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 179-316 1.81e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 44.71  E-value: 1.81e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 179 PEDAAPRSGGAPRQDAAREAPGSEAARPEQEPPAAEPVPVCTIFSQRAPPAPRDGFEPQMVKSPsfggASEAPARTPPQA 258
Cdd:PRK14951  366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAP----AAAAPAAAPAAA 441

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1622856821 259 VQPSPSlstffgdAAASHSLASDFFDSFTTSAFVSVSNPGAGSPASASPPPVSVPGTE 316
Cdd:PRK14951  442 PAAVAL-------APAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
 136-441 4.11e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 43.54  E-value: 4.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 136 DAGDLGRAREEAEPGGEGDPGPEPASTPSPTGEVHGDCAPEDAPEDAA---------PRSGGAPRQDAAREAPGSEAARP 206
Cdd:PRK08691  367 DANAVIENTELQSPSAQTAEKETAAKKPQPRPEAETAQTPVQTASAAAmpsegktagPVSNQENNDVPPWEDAPDEAQTA 446

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 207 EqePPAAEPVPVCTIFSQRAPPAPRDGFEPQMVKSPSFGGASEAPARTPPQAVQPSPSLSTffgdAAASHSLASDFFDSF 286
Cdd:PRK08691  447 A--GTAQTSAKSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSENPIQATPNDEAVET----ETFAHEAPAEPFYGY 520

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 287 TTSAFVSVSNPGAGSP----ASASPPPVSVPGTEGRPEPAAMRGPQAAAPPASPEPFAHIQAVFAGsddpFATALSMSEM 362
Cdd:PRK08691  521 GFPDNDCPPEDGAEIPppdwEHAAPADTAGGGADEEAEAGGIGGNNTPSAPPPEFSTENWAAIVRH----FARKLGAAQM 596

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 363 DRRNDAWLPGEATRGVLR-AVAAQQR---GAVFVDKENLTMP---GLRFDNIQGDAVKDLML--------RFLGEKAAAK 427
Cdd:PRK08691  597 PAQHSAWTEYHPDTGLMVlAMTAEARataDKKRLDKIRDTLAqayGLQLTLQTQDWRDEAGRetpamqdkRVQAEDRQKA 676

                         330
                  ....*....|....
gi 1622856821 428 RQVLNADSVEQSFV 441
Cdd:PRK08691  677 QALLEADPAAQKIL 690
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 156-323 6.24e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 42.98  E-value: 6.24e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 156 GPEpASTPSPTGEVHGDCAPEDApeDAAPRSGGAPRQDAAREAPGSEAARPEQEPPAaePVPVCTIFSQRAP-PAPRD-G 233
Cdd:pfam05109 424 APE-STTTSPTLNTTGFAAPNTT--TGLPSSTHVPTNLTAPASTGPTVSTADVTSPT--PAGTTSGASPVTPsPSPRDnG 498

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 234 FEPqmvKSPSFGGASEAPARTPPQAVQPSPSLSTFFGDaAASHSLASdffDSFTTSAFVSVSNPGAGSPASASPPPVSVP 313
Cdd:pfam05109 499 TES---KAPDMTSPTSAVTTPTPNATSPTPAVTTPTPN-ATSPTLGK---TSPTSAVTTPTPNATSPTPAVTTPTPNATI 571

                         170
                  ....*....|
gi 1622856821 314 GTEGRPEPAA 323
Cdd:pfam05109 572 PTLGKTSPTS 581
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 158-309 6.41e-04

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 42.79  E-value: 6.41e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 158 EPASTPSPTGEVHGDCAPEDAPEDAAPRSGGAPRQDAArEAPGSEAARPEQepPAAEPVPVCtifSQRAPPAPRDgfEPQ 237
Cdd:PHA03269   20 ANLNTNIPIPELHTSAATQKPDPAPAPHQAASRAPDPA-VAPTSAASRKPD--LAQAPTPAA---SEKFDPAPAP--HQA 91

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622856821 238 MVKSPSfggaseaPARTPPQAVQPSPSLSTFFGDAAASHSLASDffdsFTTSAFVSVSNPGAGSpaSASPPP 309
Cdd:PHA03269   92 ASRAPD-------PAVAPQLAAAPKPDAAEAFTSAAQAHEAPAD----AGTSAASKKPDPAAHT--QHSPPP 150
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 149-272 7.35e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.78  E-value: 7.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 149 PGGEGDPGPEPASTPSPTGEVHGDCAPE------DAPEDAAPRSGGAPRQDAAREAPGSEAARPEQEPPAAEPVPVCTIF 222
Cdd:PRK14951  367 AAAAEAAAPAEKKTPARPEAAAPAAAPVaqaaaaPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVA 446

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1622856821 223 SQRAPPAPRDGFEPQMVKSPSFGGASEAPARTPPQAVQPSPSLSTFFGDA 272
Cdd:PRK14951  447 LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEGDV 496
PHA03247 PHA03247
large tegument protein UL36; Provisional
 130-323 8.09e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.00  E-value: 8.09e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821  130 PNNSEGDAGDLGRAREEAEPGGEGDPGPEPASTPsPTGEVHGDCAPEDAPEDAAPRSGGAPRQ--DAAREAPGSEAARPE 207
Cdd:PHA03247  2742 PAVPAGPATPGGPARPARPPTTAGPPAPAPPAAP-AAGPPRRLTRPAVASLSESRESLPSPWDpaDPPAAVLAPAAALPP 2820

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821  208 QEPPAAePVPVCTIFSQRAPPAPRDGFEPQMVKSPSFGGASEAPARTPPQAVQPSPslstffgdAAASHSLASdffdSFT 287
Cdd:PHA03247  2821 AASPAG-PLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKP--------AAPARPPVR----RLA 2887

                          170       180       190
                   ....*....|....*....|....*....|....*.
gi 1622856821  288 TSAFVSVSNPGAGSPASASPPPVSVPGTEGRPEPAA 323
Cdd:PHA03247  2888 RPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQP 2923
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 145-275 8.80e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 42.36  E-value: 8.80e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 145 EEAEPGGEGDPGPEPASTPSPTGEVHGDCAP--EDAPEDAAPRSGGAPrqdaAREAPGSEAarpeqepPAAEPVPvcTIF 222
Cdd:PRK14959  369 ESLRPSGGGASAPSGSAAEGPASGGAATIPTpgTQGPQGTAPAAGMTP----SSAAPATPA-------PSAAPSP--RVP 435

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1622856821 223 SQRAPPAP-RDGFEPQmvKSPSFGGASEAPARtpPQAVQPSPSLSTFFGDAAAS 275
Cdd:PRK14959  436 WDDAPPAPpRSGIPPR--PAPRMPEASPVPGA--PDSVASASDAPPTLGDPSDT 485
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
167-401 1.13e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 42.17  E-value: 1.13e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 167 GEVHGDCAPedAPEDAAPRSGGAP---RQDAAREAPGSEAARPEQEPPAAEPVPVCTIFSQRAPPAPrDGFEPQMVKSPS 243
Cdd:PRK12323  366 GQSGGGAGP--ATAAAAPVAQPAPaaaAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAP-EALAAARQASAR 442

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 244 FGGASEAPARTPPQAvqPSPSLSTffgdAAAShslasdffdsfttsaFVSVSNPGAGSPASASPPPVSVPGTEGRPEPAA 323
Cdd:PRK12323  443 GPGGAPAPAPAPAAA--PAAAARP----AAAG---------------PRPVAAAAAAAPARAAPAAAPAPADDDPPPWEE 501

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622856821 324 MRGPQAAAPPASPEPFAHIQAVFAGSDDPFATALSMSEMDRRNDAWLPGEATRGVLRAVAAQQRGAVFVDKENLTMPG 401
Cdd:PRK12323  502 LPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDG 579
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 139-233 1.18e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 41.85  E-value: 1.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 139 DLGRAREEAEPGGEGDPgPEPASTPSPtgevhgdcAPEDAPEDAAPRSGGAPRQDAAREAPGSEAARPEQEPPAAEPVPV 218
Cdd:PRK14954  372 ELVRNDGGVAPSPAGSP-DVKKKAPEP--------DLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAPL 442

                          90
                  ....*....|....*
gi 1622856821 219 CTIFSQRAPPAPRDG 233
Cdd:PRK14954  443 PPSPQASAPRNVASG 457
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 175-304 3.14e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 40.50  E-value: 3.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 175 PEDAPEDAAPRSGGAPRQDAAREAPGSEAARPEQEPPAAEPVPvctifSQRAPPAPRDGFE----------PQMV----- 239
Cdd:PRK14965  385 PSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAP-----PAAAAPPARSADPaaaasagdrwRAFVafvkg 459

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622856821 240 KSPSFGGASE--APARTPPQAVQPS-PSLSTFF-----GDAAAS-HSLASDFFDSFTTSAFVSVSNPGAGSPAS 304
Cdd:PRK14965  460 KKPALGASLEqgSPLGVSAGLLEIGfPEGSFELsamqdPDSRAElKALAEQFFGRPTRLRITVLAAPPGAAPPS 533
PHA03378 PHA03378
EBNA-3B; Provisional
 123-263 3.15e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 40.82  E-value: 3.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 123 SVLISDSPNNSEGDAGDLGRARE-EAEPGGEGDPGPEPASTPSPTGEVHGDCAPEDAPEDAAPRSGGAPRQDAAREAPGs 201
Cdd:PHA03378  684 MLPIQWAPGTMQPPPRAPTPMRPpAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPG- 762

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622856821 202 EAARPEQEPPAAEPVPvctifSQRAPPAPRdgfepqmvKSPSFGGASEAPARTPPQAVQPSP 263
Cdd:PHA03378  763 RARPPAAAPGAPTPQP-----PPQAPPAPQ--------QRPRGAPTPQPPPQAGPTSMQLMP 811
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 175-321 3.75e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 40.47  E-value: 3.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 175 PEDAPEDAAPRSGGAPrqdaareapgseaARPEQEPPAAEPVPVCTIFSQRAPPAPRDGFEPQMVKSPSFGGASEAPART 254
Cdd:PRK14951  366 PAAAAEAAAPAEKKTP-------------ARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAA 432

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622856821 255 PPQAVQPSPSlstffgdAAASHSLASDFFDSFTTSAFVSVSNPGAGSPASASPPPVSVPGTEGRPEP 321
Cdd:PRK14951  433 APAAAPAAAP-------AAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 141-235 3.79e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.35  E-value: 3.79e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 141 GRAREEAEPGGEGDPGPEPASTPSPTGEVHGDCAPEDAPEDAAPRSGGAPRQDAAREAPGSEAARPEQEPPAAEPVPvct 220
Cdd:PRK07764  421 AAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAP--- 497

                          90
                  ....*....|....*
gi 1622856821 221 ifSQRAPPAPRDGFE 235
Cdd:PRK07764  498 --AAPAAPAGADDAA 510
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 143-326 4.59e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 40.15  E-value: 4.59e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821  143 AREEAEPGGEGDPGPEPASTPSPTGEVHGDCAPEDAPEDAAPRSGGAPRQDAAREAPGSEAARPEQEPPAAEPVPVCTIf 222
Cdd:PHA03307   100 PAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSS- 178

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821  223 SQRAPPAPRDGFEPQMVKSPSFGGASEAPARTPPQAvQPSPSLSTFFGDAAASHSLASDffDSFTTSAFVSVSNPGAGSP 302
Cdd:PHA03307   179 PEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPIS-ASASSPAPAPGRSAADDAGASS--SDSSSSESSGCGWGPENEC 255

                          170       180
                   ....*....|....*....|....
gi 1622856821  303 ASASPPPVSVPGTEGRPEPAAMRG 326
Cdd:PHA03307   256 PLPRPAPITLPTRIWEASGWNGPS 279
PHA03169 PHA03169
hypothetical protein; Provisional
 46-180 5.32e-03

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 39.57  E-value: 5.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821  46 QPQWAGGRGMEDAGGGEETPAPEA-PHPPQLAPPEEqgllfHEETIDLGGDEFGSEENETASEGSSPlADKLNEHMMESV 124
Cdd:PHA03169  119 SPENTSGSSPESPASHSPPPSPPShPGPHEPAPPES-----HNPSPNQQPSSFLQPSHEDSPEEPEP-PTSEPEPDSPGP 192

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1622856821 125 LISDSPNNSEGDAGDLGRAREEAEPGGEGDPGPEPASTPSPTGEVHGDCAPEDAPE 180
Cdd:PHA03169  193 PQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPFP 248
KREPA2 cd23959
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ...
 141-308 5.83e-03

Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex.


Pssm-ID: 467780 [Multi-domain]  Cd Length: 424  Bit Score: 39.47  E-value: 5.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 141 GRAREEAEPGGEGdPGPEPASTPSPTGEVHGDCAP--EDAPEDAAPRSGGAPRQDAAREAPGSEAARPEQEPPAAEPVPV 218
Cdd:cd23959    59 GAVSPEGENPFDG-PGLVTASTVSDCYVGNANFYEvdMSDAFAMAPDESLGPFRAARVPNPFSASSSTQRETHKTAQVAP 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821 219 cTIFSQRAPPAPRDGfepqmvKSPSFGGASEAPARTPPQAV-QPSPSLSTFFGDAAASHSLASDFFDSFTTSAFVSVSNP 297
Cdd:cd23959   138 -PKAEPQTAPVTPFG------QLPMFGQHPPPAKPLPAAAAaQQSSASPGEVASPFASGTVSASPFATATDTAPSSGAPD 210

                         170
                  ....*....|.
gi 1622856821 298 GAGSPASASPP 308
Cdd:cd23959   211 GFPAEASAPSP 221
PHA03247 PHA03247
large tegument protein UL36; Provisional
 155-319 6.69e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.92  E-value: 6.69e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821  155 PGPEPASTPSPTGEVHGDCAPEDAPEDAAPRSGGAPRQDAAREAPGS----EAARPEQEPPA----------AEPVPVCT 220
Cdd:PHA03247  2569 PPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSplppDTHAPDPPPPSpspaanepdpHPPPTVPP 2648

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622856821  221 IFSQRAPPAPRDGFEPQMVKSPSFGGASEAPARTP-PQAVQPSPSLSTFFGD--------AAASHSLASDFFDSFTTSAF 291
Cdd:PHA03247  2649 PERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPrRRAARPTVGSLTSLADpppppptpEPAPHALVSATPLPPGPAAA 2728

                          170       180       190
                   ....*....|....*....|....*....|..
gi 1622856821  292 VSVSNPgagSPASASPPPV----SVPGTEGRP 319
Cdd:PHA03247  2729 RQASPA---LPAAPAPPAVpagpATPGGPARP 2757
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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