|
Name |
Accession |
Description |
Interval |
E-value |
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
214-278 |
2.19e-34 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 126.36 E-value: 2.19e-34
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622847186 214 IGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKV 278
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
60-124 |
7.77e-31 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 116.35 E-value: 7.77e-31
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622847186 60 VGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKL 124
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
214-279 |
6.35e-28 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 108.06 E-value: 6.35e-28
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622847186 214 IGDRVLVGGT-KAGVVRFLGETDFAKGEWCGVELDEPL-GKNDGAVAGTRYFQCQPKYGLFAPVHKVT 279
Cdd:smart01052 1 VGDRVEVGGGgRRGTVRYVGPTPFAPGVWVGVELDEPLrGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
60-125 |
3.28e-27 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 106.13 E-value: 3.28e-27
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622847186 60 VGERVWVNGN-KPGFIQFLGETQFAPGQWAGIVLDEP-IGKNDGSVAGVRYFQCEPLKGIFTRPSKLT 125
Cdd:smart01052 1 VGDRVEVGGGgRRGTVRYVGPTPFAPGVWVGVELDEPlRGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
862-1759 |
5.92e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 94.35 E-value: 5.92e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 862 QELKAGYEKA--TSETKTKHEEILQNLRKTLLDTeDKLKGAREENSGLLQELEELRKQADKAKSLTYLLTSAKKEIELMS 939
Cdd:TIGR02168 155 EERRAIFEEAagISKYKERRKETERKLERTRENL-DRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLR 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 940 -----EELRGLKSEKQLLSQEGNDLKLENGSLLSKLVELEAKIALLQGDQQKLWSVNETLNLEKEKFLEEKQDAEKHYEQ 1014
Cdd:TIGR02168 234 leelrEELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1015 EHLNKEVLAVEREKLLKEINVAQEELLKINMENDSLQASKVSMQTLIEELQLSKDALIAKTEKDQEERDHLADQIKKLIT 1094
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLEL 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1095 EnfilakdkddiIQKLQSSYEELVKDQKALVQDIEDLTAEKKSALEKLSNLDNTCIALKVErdnalqnnrdlqlETDMLL 1174
Cdd:TIGR02168 394 Q-----------IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELE-------------ELEEEL 449
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1175 HDQEKLNASLQAALqvkqllrseaSGLRAQLDDASKALRKAELETMQLQATNTSLTKLLEeikarravtdseciqllhEK 1254
Cdd:TIGR02168 450 EELQEELERLEEAL----------EELREELEEAEQALDAAERELAQLQARLDSLERLQE------------------NL 501
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1255 ETLAASERRLLAEKEELLSENRIITEKLHKCSEEAAHTEMSLNEKITYLTSEKEMASQK----MTKLKKHQDSLLKEKSA 1330
Cdd:TIGR02168 502 EGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKaiafLKQNELGRVTFLPLDSI 581
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1331 LETQNGVLLAERENSIKAIGDLKRQCDQESANRRIIVQEnmkLLGNI---------DALKKELQERKN---ENQELV--- 1395
Cdd:TIGR02168 582 KGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSY---LLGGVlvvddldnaLELAKKLRPGYRivtLDGDLVrpg 658
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1396 ------ASKCDLSLMlkEAQNAKKNLEKEHTHILQAKENLDAELNTccsekniLLRDSLNLQEECQKLSEEIQEMQQSLI 1469
Cdd:TIGR02168 659 gvitggSAKTNSSIL--ERRREIEELEEKIEELEEKIAELEKALAE-------LRKELEELEEELEQLRKELEELSRQIS 729
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1470 LEQE---ARAKEKESSLYENNQLHGRMVLLEQEVEELRVCTEELQSEKFVLLQEKTKSEQEVAEIIEEKELLTAEAAQLA 1546
Cdd:TIGR02168 730 ALRKdlaRLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELR 809
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1547 AHIKTLKSDFAALSKSKAELQELHSCLTKILDDLQLNHEVTLAEKAQVMQDNQNLLAEKSEMMLEKDELLKEKEMLAESY 1626
Cdd:TIGR02168 810 AELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEAL 889
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1627 FILQKEISQLAKTNSHISANLLESQNENRTLRKDKNKLTLKIRELETLQSFTAAQTAEDAMQIMEQMTKEKTETLASLED 1706
Cdd:TIGR02168 890 ALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEE 969
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|...
gi 1622847186 1707 TKQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQA 1759
Cdd:TIGR02168 970 ARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEA 1022
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
658-1552 |
7.54e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 90.89 E-value: 7.54e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 658 KEKENSLEAIKSKLDKAEDQhLVEMEETLNKLQEAEIKKEKFAEASEEAVSVQRSMQetVNKLHQKEEQFNMLSSDLEKL 737
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDI-LNELERQLKSLERQAEKAERYKELKAELRELELALL--VLRLEELREELEELQEELKEA 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 738 RENLAEMEAKFREKDEREEQLIKAKEKLENDIAEIMKmsgdnssqltkmndELRLKERYVEELQLKLTKANENASFLQKS 817
Cdd:TIGR02168 252 EEELEELTAELQELEEKLEELRLEVSELEEEIEELQK--------------ELYALANEISRLEQQKQILRERLANLERQ 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 818 IEdmtlkaeqsqqeaaekheeekkelerklsdlekkmetshnqcqelkagyekatsetktKHEEILQNLRKTLLDTEDKL 897
Cdd:TIGR02168 318 LE----------------------------------------------------------ELEAQLEELESKLDELAEEL 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 898 KGAREENSGLLQELEELRKQADKAKSLTYLLTSAKKEIElmsEELRGLKSEKQLLSQEGNDLKLENGSLLSKLVELEAKI 977
Cdd:TIGR02168 340 AELEEKLEELKEELESLEAELEELEAELEELESRLEELE---EQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR 416
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 978 ALLQGDQQKLWSVNETLNLEKEKFLEEKQDAEKHYEQEHLnkEVLAVEREKLLKEINVAQEELLKINMENDSLQASKVSM 1057
Cdd:TIGR02168 417 ERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEEL--ERLEEALEELREELEEAEQALDAAERELAQLQARLDSL 494
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1058 QTLIEELQlSKDALIAKTEKDQEERDHLADQIKKLIT--ENFILAKDKD--DIIQKLqssyeeLVKDQKALVQDIEDLta 1133
Cdd:TIGR02168 495 ERLQENLE-GFSEGVKALLKNQSGLSGILGVLSELISvdEGYEAAIEAAlgGRLQAV------VVENLNAAKKAIAFL-- 565
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1134 eKKSALEKLSNLDNTCI---ALKVERDNALQNNRDLQLETDMLLHDQEKLNA-------------SLQAALQVKQLLRSE 1197
Cdd:TIGR02168 566 -KQNELGRVTFLPLDSIkgtEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKalsyllggvlvvdDLDNALELAKKLRPG 644
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1198 ------------ASGLRAQLDDASKAL---RKAELEtmQLQATNTSLTKLLEEIKARRAVTDSECIQLLHEKETLaaseR 1262
Cdd:TIGR02168 645 yrivtldgdlvrPGGVITGGSAKTNSSileRRREIE--ELEEKIEELEEKIAELEKALAELRKELEELEEELEQL----R 718
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1263 RLLAEKEELLSENRIITEKLHKCSEEAAHTEMSLNEKITYLTSEKEMASQKMTKLKKHQDSLLKEKSALETQNGVLLAER 1342
Cdd:TIGR02168 719 KELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL 798
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1343 ENSIKAIGDLKRQCDQESANRRIIVQENMKLLGNIDALKKELQERKNENQELVASKCDLSLMLKEAQNAKKNLEKEHTHI 1422
Cdd:TIGR02168 799 KALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL 878
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1423 LQAKENLDAELNTCCSEKNILLRDSLNLQEECQKLSEEIQEMQQSL--ILEQEARAKEKESSLYENNQLHGRMVLLEQEV 1500
Cdd:TIGR02168 879 LNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLaqLELRLEGLEVRIDNLQERLSEEYSLTLEEAEA 958
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622847186 1501 EELRVCTEELQSEKFV-LLQEKTK--------SEQEVAEIIEEKELLTAEAAQLAAHIKTL 1552
Cdd:TIGR02168 959 LENKIEDDEEEARRRLkRLENKIKelgpvnlaAIEEYEELKERYDFLTAQKEDLTEAKETL 1019
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
911-1503 |
4.13e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 84.99 E-value: 4.13e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 911 LEELRKQADKAKS-LTYLLTSAKKEIELMSEELRGLKSEKQLLSQEGNDLKLENGSLLSKLVELEAKIALLQGDQQKLws 989
Cdd:COG1196 202 LEPLERQAEKAERyRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEEL-- 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 990 vnetlNLEKEKFLEEKQDAEKHYEQEHLNKEVLAVEREKLLKEINVAQEELLKINMENDSLQASKVSMQTLIEELQLSKD 1069
Cdd:COG1196 280 -----ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1070 ALIAKTEKDQEERDHLADQIKKLITENFILAKDKDDIIQKLQssyeELVKDQKALVQDIEDLTAEKKSALEKLSNLDNTC 1149
Cdd:COG1196 355 EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAA----ELAAQLEELEEAEEALLERLERLEEELEELEEAL 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1150 IALKVERDNALQNNRDLQLETDMLLHDQEKLNASLQAALQVKQLLRSEASGLRAQLDDA-SKALRKAELETMQLQATNTS 1228
Cdd:COG1196 431 AELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAaARLLLLLEAEADYEGFLEGV 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1229 LTKLLEEIKARRAVTDSECIQLLHEKET-LAASERRLLAEKEELLSENRIITEKLHKCSEEAAHTEMSLNEKITYLTSEK 1307
Cdd:COG1196 511 KAALLLAGLRGLAGAVAVLIGVEAAYEAaLEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAA 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1308 EMASQKMTKLKKHQDSLLKEKSALETQNGVLLAEReNSIKAIGDLKRQCDQESANRRIIVQENMKlLGNIDALKKELQER 1387
Cdd:COG1196 591 ALARGAIGAAVDLVASDLREADARYYVLGDTLLGR-TLVAARLEAALRRAVTLAGRLREVTLEGE-GGSAGGSLTGGSRR 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1388 KNENQELVASKCDLSLMLKEAQNAKKNLEKEHTHILQAKENLDAELNTCCSEKNILLRDSLNLQEEcqklsEEIQEMQQS 1467
Cdd:COG1196 669 ELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAER-----EELLEELLE 743
|
570 580 590
....*....|....*....|....*....|....*.
gi 1622847186 1468 LILEQEARAKEKESSLYENNQLHGRMVLLEQEVEEL 1503
Cdd:COG1196 744 EEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
405-1236 |
1.10e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 83.57 E-value: 1.10e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 405 ELEAKMDQLRTMVEAADREKvELLNQLEEEKRKVEDLQFRVEEESITKgdLEVATVSEKSRIMELEKDLALRVQEVAELR 484
Cdd:TIGR02168 197 ELERQLKSLERQAEKAERYK-ELKAELRELELALLVLRLEELREELEE--LQEELKEAEEELEELTAELQELEEKLEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 485 -RRLESNKPAGDVDMSL-SLLQEISSLQEKLEVTRTDHQREITSLKEHFGAREETHQKEIKALYTATEkLSKENESLKSK 562
Cdd:TIGR02168 274 lEVSELEEEIEELQKELyALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAE-LEEKLEELKEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 563 LEHANKENSDVIALWKSkLETAIASHQQAMEELKvsfskglgtetAEFAELKTQIEKMRLDYQhEIENLQNQQDSERSAH 642
Cdd:TIGR02168 353 LESLEAELEELEAELEE-LESRLEELEEQLETLR-----------SKVAQLELQIASLNNEIE-RLEARLERLEDRRERL 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 643 AKEMEALRAKLmkvikeKENSLEAIKSKLDKaEDQHLVEMEETLNKLQEA-EIKKEKFAEASEEAVSVQRSMQETVNKLH 721
Cdd:TIGR02168 420 QQEIEELLKKL------EEAELKELQAELEE-LEEELEELQEELERLEEAlEELREELEEAEQALDAAERELAQLQARLD 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 722 QKEEQFNMLSSDLEKLRENLAEmEAKFREKDEREEQLIKAKEKLENDIAEIMkmsGDNSSQLTKMNDelrlkERYVEELQ 801
Cdd:TIGR02168 493 SLERLQENLEGFSEGVKALLKN-QSGLSGILGVLSELISVDEGYEAAIEAAL---GGRLQAVVVENL-----NAAKKAIA 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 802 LKLTKANENASFLQksiedMTLKAEQSQQEAAEKHEEEKKELERKLSDLEKKMETSHNQCQELKAGYEKATSETKTKHEE 881
Cdd:TIGR02168 564 FLKQNELGRVTFLP-----LDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELA 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 882 ILQNLRKTLLDTEDKL--------KGAREENSGLL---QELEELRKQADKAKSltylltsakkEIELMSEELRGLKSEKQ 950
Cdd:TIGR02168 639 KKLRPGYRIVTLDGDLvrpggvitGGSAKTNSSILerrREIEELEEKIEELEE----------KIAELEKALAELRKELE 708
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 951 LLSQEGNDLKLENGSLLSKLVELEAKIALLQGDQQKLWSVNETLNLEKEKFLEEKQDAEKHYEQEHLNKEVLAVEREKLL 1030
Cdd:TIGR02168 709 ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE 788
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1031 KEINVAQEELLKINMENDSLQAskvsmqtlieELQLSKDALIAKTEKDQEERDHLADQiKKLITENFILAKDKDDIIQKL 1110
Cdd:TIGR02168 789 AQIEQLKEELKALREALDELRA----------ELTLLNEEAANLRERLESLERRIAAT-ERRLEDLEEQIEELSEDIESL 857
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1111 QSSYEELVKDQKALVQDIEDLTAEKKSALEKLSNLDNTCIALKVERDNALQNNRDLQLETDMLLHDQEKLNASLQAA-LQ 1189
Cdd:TIGR02168 858 AAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLeVR 937
|
810 820 830 840
....*....|....*....|....*....|....*....|....*..
gi 1622847186 1190 VKQLLRSEASGLRAQLDDASKALRKAELETMQLQATNTSLTKLLEEI 1236
Cdd:TIGR02168 938 IDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
611-1394 |
1.40e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 83.18 E-value: 1.40e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 611 AELKTQIEKMRLdyQHEI-ENLQNQQDSERSAH----AKEMEALRAKLMKV---IKEKENSLEAIKSKLDKAEDQHlvem 682
Cdd:TIGR02168 196 NELERQLKSLER--QAEKaERYKELKAELRELElallVLRLEELREELEELqeeLKEAEEELEELTAELQELEEKL---- 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 683 eetlnklqeaEIKKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLAEMEAKFREKDEREEQLIKAK 762
Cdd:TIGR02168 270 ----------EELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEEL 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 763 EKLENDIAEIMKMSGDNSSQLTKMNDELRLKERYVEELQLKLTKANENASFLQKSIEdmTLKAEQSQQeaaekheeekke 842
Cdd:TIGR02168 340 AELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA--SLNNEIERL------------ 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 843 lERKLSDLEKKMEtshNQCQELKAGYEKATSETKTKHEEILQNLRKTLLDTEDKLKGAREENSGLLQELEELRKQADKAK 922
Cdd:TIGR02168 406 -EARLERLEDRRE---RLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 923 SLTYLLTSAKKEIELMSEELRGLKSEKQLLSQEGNDLKLENGsLLSKLVELEAKI-----ALLQGDQQKLWSVNetlnle 997
Cdd:TIGR02168 482 RELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILG-VLSELISVDEGYeaaieAALGGRLQAVVVEN------ 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 998 kekfLEEKQDAEKHYEQEHLNKEVLAVEREKLLKEINVAQEELLKINMENDSLQASKVSMQTLIEEL--QLSKDALIAKT 1075
Cdd:TIGR02168 555 ----LNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAlsYLLGGVLVVDD 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1076 EKDqeerdhlADQIKKLITENFILAKDKDDIIQKLQSSYEELVKDQKALV---QDIEDLTAEKKSALEKLSNLDNTCIAL 1152
Cdd:TIGR02168 631 LDN-------ALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILerrREIEELEEKIEELEEKIAELEKALAEL 703
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1153 KVERDNALQNNRDLQLETDMLLHDQEKLNASLQAalqvkqlLRSEASGLRAQLDDASKALRKAELETMQLQATNTSLTKL 1232
Cdd:TIGR02168 704 RKELEELEEELEQLRKELEELSRQISALRKDLAR-------LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEE 776
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1233 LEEIKARRAVTDSECIQLlheKETLAASERRLLAEKEELLSENRIITEKLHKCSEEAAHTEMsLNEKITYLTSEKEMASQ 1312
Cdd:TIGR02168 777 LAEAEAEIEELEAQIEQL---KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAA-TERRLEDLEEQIEELSE 852
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1313 KMTKLKKHQDSLLKEKSALETQNGVLLAERENSIKAIGDLKRQCDQESANRRIIVQENMKLLGNIDALKKELQERKNENQ 1392
Cdd:TIGR02168 853 DIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLE 932
|
..
gi 1622847186 1393 EL 1394
Cdd:TIGR02168 933 GL 934
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1208-1928 |
3.86e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 82.03 E-value: 3.86e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1208 ASKALR----KAELETMQLqatnTSLTKLLEEIKARRAVTDSECIQLLHEKETLAaserRLLAEKEELLSENRIITEKLH 1283
Cdd:TIGR02168 209 AEKAERykelKAELRELEL----ALLVLRLEELREELEELQEELKEAEEELEELT----AELQELEEKLEELRLEVSELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1284 KCSEEAAHTEMSLNEKITYLTSEKEMASQKMTKLKKHQDSLLKEKSALETQNGVLLAERENSIKAIGDLKRQCDQESA-- 1361
Cdd:TIGR02168 281 EEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAel 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1362 NRRIIVQENMKLLgnIDALKKELQERKNENQELVASKCDLSLMLKEAQNAKKNLEKEHTHILQAKENLDAELNTccSEKN 1441
Cdd:TIGR02168 361 EELEAELEELESR--LEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE--AELK 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1442 ILLRDSLNLQEECQKLSEEIQEMQQSLILEQEARAKEKE---SSLYENNQLHGRMVLLEQEVEELRvctEELQSEKFVLL 1518
Cdd:TIGR02168 437 ELQAELEELEEELEELQEELERLEEALEELREELEEAEQaldAAERELAQLQARLDSLERLQENLE---GFSEGVKALLK 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1519 QEKTKSE--QEVAEIIE-EKELLTAEAAQLAAHIKTL--------KSDFAALSKSK--------------AELQELHSCL 1573
Cdd:TIGR02168 514 NQSGLSGilGVLSELISvDEGYEAAIEAALGGRLQAVvvenlnaaKKAIAFLKQNElgrvtflpldsikgTEIQGNDREI 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1574 TKILDDLQ--LNHEVTLAEKAQ-----------VMQDNQNLLAEKSEMMLEKDELLKEKEMLAESYFILQKEisqlAKTN 1640
Cdd:TIGR02168 594 LKNIEGFLgvAKDLVKFDPKLRkalsyllggvlVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGS----AKTN 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1641 ShisaNLLESQNENRTLRKDKNKLTLKIRELET-----LQSFTAAQTA-EDAMQIMEQMTKEKTETLASLEDTKQTNAKL 1714
Cdd:TIGR02168 670 S----SILERRREIEELEEKIEELEEKIAELEKalaelRKELEELEEElEQLRKELEELSRQISALRKDLARLEAEVEQL 745
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1715 QNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVtshQKL 1794
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA---ANL 822
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1795 EEERSVLNNQLLEMKKSlpsntlreskfIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKSLhsv 1874
Cdd:TIGR02168 823 RERLESLERRIAATERR-----------LEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEA--- 888
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....
gi 1622847186 1875 VQTLESDKVKLELKVKNLELQLKENKRQLSSSsgnTDTQADEDERAQESQQMID 1928
Cdd:TIGR02168 889 LALLRSELEELSEELRELESKRSELRRELEEL---REKLAQLELRLEGLEVRID 939
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
908-1757 |
6.94e-15 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 80.88 E-value: 6.94e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 908 LQELEELRKQADKAKSLtylltsakkeIELMSEELRGLKSEKqllsqegnDLKLENGSLLSKLVELEAKIALLQgdqqkl 987
Cdd:TIGR02169 176 LEELEEVEENIERLDLI----------IDEKRQQLERLRRER--------EKAERYQALLKEKREYEGYELLKE------ 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 988 wsvNETLNLEKEKFLEEKQDAEKHYEQ-----EHLNKEVlaVEREKLLKEIN-----VAQEELLKINMENDSLQASKVSM 1057
Cdd:TIGR02169 232 ---KEALERQKEAIERQLASLEEELEKlteeiSELEKRL--EEIEQLLEELNkkikdLGEEEQLRVKEKIGELEAEIASL 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1058 QTLIEELQLSKDALIAKTEKDQEERDHLADQIKKLITENFILAKDKDdiiqKLQSSYEELVKDQKALVQDIEDLTAEKKS 1137
Cdd:TIGR02169 307 ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRD----KLTEEYAELKEELEDLRAELEEVDKEFAE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1138 ALEKLSNLDNTCIALKVERDNALQNNRDLQLETDMLLHDQEKLNA----------SLQAALQVKQL----LRSEASGLRA 1203
Cdd:TIGR02169 383 TRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAaiagieakinELEEEKEDKALeikkQEWKLEQLAA 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1204 QLDDASKALRKAELETMQLQATNTSLTKLLEEIKARRAVTDSECIQLLHEKETLAASERRLLAEKEELLSenriITEKLH 1283
Cdd:TIGR02169 463 DLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGS----VGERYA 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1284 KCSEEAA---------HTEMSLNEKITYLtseKEMASQKMTKL---KKHQDSLLKEKSALETQNGVLLaerensikaigD 1351
Cdd:TIGR02169 539 TAIEVAAgnrlnnvvvEDDAVAKEAIELL---KRRKAGRATFLplnKMRDERRDLSILSEDGVIGFAV-----------D 604
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1352 LKRqCDQESANRRIIVQENMKLLGNIDALKKELQERKnenqeLVASKCDL----------SLMLKEAQNAKKNLEKEHTH 1421
Cdd:TIGR02169 605 LVE-FDPKYEPAFKYVFGDTLVVEDIEAARRLMGKYR-----MVTLEGELfeksgamtggSRAPRGGILFSRSEPAELQR 678
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1422 ILQAKENLDAELNTCCSEKNILLRDSLNLQEECQKLSEEIQEMQ--QSLILEQEARAKEKesslyennqlhgrmvlLEQE 1499
Cdd:TIGR02169 679 LRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEkeIEQLEQEEEKLKER----------------LEEL 742
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1500 VEELRVCTEELQSEKfvllQEKTKSEQEVAEIIEEKELLTAEAAQLAAHIktLKSDFAALSKSKAELQELHSCLTKILDD 1579
Cdd:TIGR02169 743 EEDLSSLEQEIENVK----SELKELEARIEELEEDLHKLEEALNDLEARL--SHSRIPEIQAELSKLEEEVSRIEARLRE 816
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1580 LQLNHEVTLAEKAQVMQDNQNLLAE-------KSEMMLEKDELLKEKEMLAESYFILQKEISQLAKTNSHISANLLESQN 1652
Cdd:TIGR02169 817 IEQKLNRLTLEKEYLEKEIQELQEQridlkeqIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEA 896
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1653 ENRTLRKDKNKLTLKIRELETLQSFTAAQTAEDAMQIME-----QMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLK 1727
Cdd:TIGR02169 897 QLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEiedpkGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNML 976
|
890 900 910 920
....*....|....*....|....*....|....*....|
gi 1622847186 1728 NVEE----------LNKSKELLTVENQKMEEFRKEIETLK 1757
Cdd:TIGR02169 977 AIQEyeevlkrldeLKEKRAKLEEERKAILERIEEYEKKK 1016
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1107-1899 |
1.75e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 79.72 E-value: 1.75e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1107 IQKLQSSYEELVKDQKALVQDIEDLTAEKKSALEKLSNLDntciALKVERDNALQnnrDLQLETDMLLHDQEKLNASLQA 1186
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELR----LEVSELEEEIE---ELQKELYALANEISRLEQQKQI 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1187 ALQVKQLLRSEASGLRAQLDDASKALRKAELETMQLQATNTSLTKLLEEIKArravtdseciQLLHEKETLAASERRLLA 1266
Cdd:TIGR02168 307 LRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEA----------ELEELEAELEELESRLEE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1267 EKEELLSENRIITEKLHKcseeaahtEMSLNEKITYLTSEKEMASQKMTKLKKHQDSLLKEKSaletqngvlLAERENSI 1346
Cdd:TIGR02168 377 LEEQLETLRSKVAQLELQ--------IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLE---------EAELKELQ 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1347 KAIGDLKRQCDQESANRRIIVQENMKLLGNIDALKKELQERKNENQELvASKCDlslMLKEAQNAKKNLEKEHTHILQAK 1426
Cdd:TIGR02168 440 AELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL-QARLD---SLERLQENLEGFSEGVKALLKNQ 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1427 ENLDAELNtccsekniLLRDSLNLQEECQK-LSEEIQEMQQSLILEQEARAKEKESSLYENNQlhGRMVLLEQEVEELRv 1505
Cdd:TIGR02168 516 SGLSGILG--------VLSELISVDEGYEAaIEAALGGRLQAVVVENLNAAKKAIAFLKQNEL--GRVTFLPLDSIKGT- 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1506 cteELQSEKFVLLQEKTKSEQEVAEIIEEKELLTAEAAQLAAHIKTLKSDFAALSKSKaELQELHSCLTkiLDDLQLNHE 1585
Cdd:TIGR02168 585 ---EIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAK-KLRPGYRIVT--LDGDLVRPG 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1586 VTLAEKAQvmQDNQNLLAEKSEMmlekDELLKEKEMLAESYFILQKEISQLAKTnshisanLLESQNENRTLRKDKNKLT 1665
Cdd:TIGR02168 659 GVITGGSA--KTNSSILERRREI----EELEEKIEELEEKIAELEKALAELRKE-------LEELEEELEQLRKELEELS 725
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1666 LKIRELETlQSFTAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQK 1745
Cdd:TIGR02168 726 RQISALRK-DLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREA 804
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1746 MEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEvtsHQKLEEERSVLNNQLLEMKKSLPsntlRESKFIKD 1825
Cdd:TIGR02168 805 LDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQ---IEELSEDIESLAAEIEELEELIE----ELESELEA 877
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622847186 1826 ADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGE-NASAKSLHSVVQTLEsdkvKLELKVKNLELQLKEN 1899
Cdd:TIGR02168 878 LLNERASLEEALALLRSELEELSEELRELESKRSELRRElEELREKLAQLELRLE----GLEVRIDNLQERLSEE 948
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
692-1536 |
1.87e-14 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 79.63 E-value: 1.87e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 692 AEIKKEKFAEASEEAVSVQRSMQETVNKLHQK-EEQFNMLSSDLEKLRENLAEMEAKFREKDEREEQLIKAKEKLENDIA 770
Cdd:pfam02463 147 IAMMKPERRLEIEEEAAGSRLKRKKKEALKKLiEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYL 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 771 EIMKMSGDNSSQLTKMNDELRLKERYVEELQLKLTKANENASFLQKSIEDMTlKAEQSQQEAAEKHEEEKKELERKLSDL 850
Cdd:pfam02463 227 LYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEE-KEKKLQEEELKLLAKEEEELKSELLKL 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 851 EKKMETSHNQCQELKAGYEKATSETKTKHEEI--LQNLRKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKSLTYLL 928
Cdd:pfam02463 306 ERRKVDDEEKLKESEKEKKKAEKELKKEKEEIeeLEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESER 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 929 TSAKKEI-----ELMSEELRGLKSEKQLLSQEGNDLKLENGSLLSKLVELEAKIALLQGDQQKLWSVNETLNLEKEKFLE 1003
Cdd:pfam02463 386 LSSAAKLkeeelELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDEL 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1004 EKQDAEKHYEQEHLNKEVLA---VEREKLLKEINVAQEELLKINMENDSLQASKVSMQTLIEELQLSKDALIAKTEK--- 1077
Cdd:pfam02463 466 ELKKSEDLLKETQLVKLQEQlelLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKvai 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1078 ------DQEERDHLADQIKKLITENFILAKDKDDIIQKLQSSYEELVKDQKALVQDIEDLTAEKKSALEKLSNLDNTCIA 1151
Cdd:pfam02463 546 stavivEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVV 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1152 LKVERDNALQNNRDLQLETDMLLHDQEKLNASLQAALQVKQLLRSEASGLRAQLDDASKALRKAELETMQLQATNTSLTK 1231
Cdd:pfam02463 626 EGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKE 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1232 LLEEIKARRAVTDSECIQLLHEKETLAASERRLLAEKEELLSENRIITEKLHKcSEEAAHTEMSLNEKITYLTSEKEMAS 1311
Cdd:pfam02463 706 QREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLK-KEEKEEEKSELSLKEKELAEEREKTE 784
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1312 QKMTKLKKHQDSLLKEKSALETQNGVLLAERENSIKAIGDLKRQCDQESANRRIIVQENMKLLGNIDALKKELQERKNEN 1391
Cdd:pfam02463 785 KLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEIT 864
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1392 QELVASKCDLSLMLKEAQNAKKNLEKEHTHILQAKENLDAELNTCCSEKNILLRDSLNLQEECQKLSEEIqEMQQSLILE 1471
Cdd:pfam02463 865 KEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYE-EEPEELLLE 943
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622847186 1472 QEARAKEKESSLYENNQlhgRMVLLEQEVEELRVCTEELQSEKFVLLQEKTKSEQEVAEIIEEKE 1536
Cdd:pfam02463 944 EADEKEKEENNKEEEEE---RNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKK 1005
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
691-1514 |
1.12e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 77.03 E-value: 1.12e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 691 EAEIKKEKfaeASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLA----EMEAKFREKDEREEQLIKAKEKLE 766
Cdd:TIGR02169 167 EFDRKKEK---ALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQAllkeKREYEGYELLKEKEALERQKEAIE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 767 NDIAEIMKMSGDNSSQLTKMNDELRLKERYVEELQLKLTKANENASF-LQKSIEDMTLKAEQSQqeaaekheeekkeleR 845
Cdd:TIGR02169 244 RQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLrVKEKIGELEAEIASLE---------------R 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 846 KLSDLEKKMETSHNQCQELKAGYEKaTSETKTKHEEILQNLRKTLLDTEDKLKGAREENSGLLQELEELRKQA----DKA 921
Cdd:TIGR02169 309 SIAEKERELEDAEERLAKLEAEIDK-LLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFaetrDEL 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 922 KSLTYLLTSAKKEIELMSEELRGLKSEKQLLSQEGNDLKLENGSLLSKLVELEA----KIALLQGDQQKLWSVNETLNLE 997
Cdd:TIGR02169 388 KDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEekedKALEIKKQEWKLEQLAADLSKY 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 998 KEKFLEEKQDAEK-HYEQEHLNKEVLAVEREKLLKEI----NVAQEELLK------------------------------ 1042
Cdd:TIGR02169 468 EQELYDLKEEYDRvEKELSKLQRELAEAEAQARASEErvrgGRAVEEVLKasiqgvhgtvaqlgsvgeryataievaagn 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1043 ----INMENDSLQASKVSmqtLIEELQLSKDALIAKTEKDQEERDhladqIKKLITENFI-LAKDKDDIIQKLQSSYEEL 1117
Cdd:TIGR02169 548 rlnnVVVEDDAVAKEAIE---LLKRRKAGRATFLPLNKMRDERRD-----LSILSEDGVIgFAVDLVEFDPKYEPAFKYV 619
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1118 VKDQkALVQDIEdlTAEKKSALEKLSNLDNTCIALK-------VERDNALQNNRDLQLETDMLLHDQEKLNASLQAALQV 1190
Cdd:TIGR02169 620 FGDT-LVVEDIE--AARRLMGKYRMVTLEGELFEKSgamtggsRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSE 696
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1191 KQLLRSEASGLRAQLDDASKALRKAELETMQLQATNTSLTKLLEEIKARRAVTDSECIQLLHEKETLAAS----ERRLLA 1266
Cdd:TIGR02169 697 LRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARieelEEDLHK 776
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1267 EKEEL--------LSENRIITEKLHKCSEEAAHTEMSLNE---KITYLTSEKEMASQKMTKLKKHQDSLLKEKSALEtqn 1335
Cdd:TIGR02169 777 LEEALndlearlsHSRIPEIQAELSKLEEEVSRIEARLREieqKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIE--- 853
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1336 gvllAERENSIKAIGDLKRQCDQESANRRIIVQENMKLLGNIDALKKELQERKNENQELVASKCDLSLMLKEAQNAKKNL 1415
Cdd:TIGR02169 854 ----KEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEAL 929
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1416 EKEHTHILQAKENLDAElntccSEKNILLRDslnLQEECQKLSEEIQEMQQSLILEQEarakEKESSLYENNQLHGRMVL 1495
Cdd:TIGR02169 930 EEELSEIEDPKGEDEEI-----PEEELSLED---VQAELQRVEEEIRALEPVNMLAIQ----EYEEVLKRLDELKEKRAK 997
|
890
....*....|....*....
gi 1622847186 1496 LEQEVEELRVCTEELQSEK 1514
Cdd:TIGR02169 998 LEEERKAILERIEEYEKKK 1016
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
428-1216 |
3.92e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.09 E-value: 3.92e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 428 LNQLEEEKRKVEDLQFRVEEESITKGDLEVATV-SEKSRIMELEKDLALRVQEVAELRRRLESnkpagdVDMSLSLLQ-E 505
Cdd:TIGR02168 202 LKSLERQAEKAERYKELKAELRELELALLVLRLeELREELEELQEELKEAEEELEELTAELQE------LEEKLEELRlE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 506 ISSLQEKLEVTRTDHQrEITSLKEHFGAREETHQKEIKALYTATEKLSKENESLKSKLEHANKEnsdvIALWKSKLETAI 585
Cdd:TIGR02168 276 VSELEEEIEELQKELY-ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE----LAELEEKLEELK 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 586 ASHQQAMEELKVSFSKGLGTETAEfAELKTQIEKMRLDYqHEIENLQNQQDSERSAHAKEMEALRAKLMKVIKEKENSLE 665
Cdd:TIGR02168 351 EELESLEAELEELEAELEELESRL-EELEEQLETLRSKV-AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLK 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 666 AIKSKLDKAEDQHLVEMEETLNKLQEA-EIKKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLAEM 744
Cdd:TIGR02168 429 KLEEAELKELQAELEELEEELEELQEElERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGV 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 745 EAKFREKDEREE------QLIKAKEKLENDIAEIMkmsGDNSSQLTKMNDElrlkeRYVEELQLKLTKANENASFLQ-KS 817
Cdd:TIGR02168 509 KALLKNQSGLSGilgvlsELISVDEGYEAAIEAAL---GGRLQAVVVENLN-----AAKKAIAFLKQNELGRVTFLPlDS 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 818 IEDMTLKAEQSQQEAAEKHEEEKKELERKLSDLEKK--------------METSHNQCQELKAGY--------------- 868
Cdd:TIGR02168 581 IKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKalsyllggvlvvddLDNALELAKKLRPGYrivtldgdlvrpggv 660
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 869 ------EKATSETKTKHEeiLQNLRKTLLDTEDKLKGAREENSGLLQELEELRKQADKAK----SLTYLLTSAKKEIELM 938
Cdd:TIGR02168 661 itggsaKTNSSILERRRE--IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRkeleELSRQISALRKDLARL 738
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 939 SEELRGLKSEKQLLSQEGNDLKLENGSLLSKLVELEAKIALLQGDQQKLWSVNETLNLEKEKFLEEKQDAEKHYEQEHLN 1018
Cdd:TIGR02168 739 EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEE 818
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1019 KEVLAVEREKLLKEINVAQEELLKINMENDSLQASKVSMQTLIEELQLSKDALIAKTEKDQEERDHLADQIKKLITENFI 1098
Cdd:TIGR02168 819 AANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEE 898
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1099 LAKDKDDI---IQKLQSSYEELVKDQKALVQDIEDLTAEKKSALEKLSNLdntciaLKVERDNALQNNRDLQLETDMLLH 1175
Cdd:TIGR02168 899 LSEELRELeskRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEE------YSLTLEEAEALENKIEDDEEEARR 972
|
810 820 830 840
....*....|....*....|....*....|....*....|....*...
gi 1622847186 1176 DQEKLNASLQ-------AALQVKQLLRSEASGLRAQLDDASKALRKAE 1216
Cdd:TIGR02168 973 RLKRLENKIKelgpvnlAAIEEYEELKERYDFLTAQKEDLTEAKETLE 1020
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1128-1944 |
4.14e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 75.10 E-value: 4.14e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1128 IEDLTAEKKSALEKLS----NLD--NTCIALKVERDNALQNNRDLQLETDMLLHDQEKLNASLQaaLQVKQLLRSEASGL 1201
Cdd:TIGR02169 165 VAEFDRKKEKALEELEeveeNIErlDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYEL--LKEKEALERQKEAI 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1202 RAQLDDASKALRKAELETMQLQATNTSLTKLLEEIKAR-RAVTDSECIQLLHEKETLAASERRLLAEKEELLSEnriite 1280
Cdd:TIGR02169 243 ERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKiKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERE------ 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1281 klhkcSEEAAHTEMSLNEKITYLTSEKEMASQKMTKLKKHQDSLLKEKSALETQNGVLLAEREnsikaigdlkrqcdQES 1360
Cdd:TIGR02169 317 -----LEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELE--------------EVD 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1361 ANRRIIVQENMKLLGNIDALKKELQERKNENQELVASKCDLSLMLKEAQNAKKNLEKEHTHILQAKENLDAELNTCCSEK 1440
Cdd:TIGR02169 378 KEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKL 457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1441 NILLRDSLNLQEECQKLSEEIQEMQQSLI-LEQEARAKEKESSLYENNQLHGRMV--LLEQEVEELRVCTEELQS--EKF 1515
Cdd:TIGR02169 458 EQLAADLSKYEQELYDLKEEYDRVEKELSkLQRELAEAEAQARASEERVRGGRAVeeVLKASIQGVHGTVAQLGSvgERY 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1516 VLLQEkTKSEQEVAEIIEEKELLTAEAAQLAAHIKTLKSDFAALSKSKAELQELHSCLTKILDDLQLNHeVTLAEK---- 1591
Cdd:TIGR02169 538 ATAIE-VAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDL-VEFDPKyepa 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1592 -AQVMQDN---QNLLAEKSEM------MLEKDELLKEKEMLAESYFILQKEISQLAKtnshiSANLLESQNENRTLRKDK 1661
Cdd:TIGR02169 616 fKYVFGDTlvvEDIEAARRLMgkyrmvTLEGELFEKSGAMTGGSRAPRGGILFSRSE-----PAELQRLRERLEGLKREL 690
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1662 NKLTLKIRELEtlqsftaaqtaedamqimeqmtKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLTV 1741
Cdd:TIGR02169 691 SSLQSELRRIE----------------------NRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSS 748
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1742 ENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSR-DEVTSH-QKLEEERSVLNNQLLEMKKSLPSNTLRE 1819
Cdd:TIGR02169 749 LEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRiPEIQAElSKLEEEVSRIEARLREIEQKLNRLTLEK 828
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1820 S----------KFIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKS----LHSVVQTLESDKVKL 1885
Cdd:TIGR02169 829 EylekeiqelqEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKerdeLEAQLRELERKIEEL 908
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*....
gi 1622847186 1886 ELKVKNLELQLKENKRQLSSSSGNTDTQADEDERAQESQQMIDFLNSVIVDLQRKNQDL 1944
Cdd:TIGR02169 909 EAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEI 967
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
352-1050 |
6.56e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 74.71 E-value: 6.56e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 352 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHVLE---LEAKMDQLRTMVEAADREKVELL 428
Cdd:TIGR02168 243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEisrLEQQKQILRERLANLERQLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 429 NQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRVQEVAELRRRLESNKPAgdvdmSLSLLQEISS 508
Cdd:TIGR02168 323 AQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSK-----VAQLELQIAS 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 509 LQEKLEVTRTdhqrEITSLKEHFG-AREETHQKEIKALYTATEKLSKENESLKSKLEHANKENSDVIAlwksKLETAIAS 587
Cdd:TIGR02168 398 LNNEIERLEA----RLERLEDRRErLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEE----ALEELREE 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 588 HQQAMEELkVSFSKGLGTETAEFAELKTQIEKMRLDYQHEIENLQNQQD------------SERSAHAKEME-ALRAKLM 654
Cdd:TIGR02168 470 LEEAEQAL-DAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGlsgilgvlseliSVDEGYEAAIEaALGGRLQ 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 655 KVIKEKENSLEAIKSKLDKAEDQHLVEMEETLNKLQEAEIKKEKFAEASEEAVSVQRSMQETVNKLH------------- 721
Cdd:TIGR02168 549 AVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRkalsyllggvlvv 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 722 ---------QKEEQFNML-----------------------------SSDLEKLRENLAEMEAKFREKDEREEQLIKAKE 763
Cdd:TIGR02168 629 ddldnalelAKKLRPGYRivtldgdlvrpggvitggsaktnssilerRREIEELEEKIEELEEKIAELEKALAELRKELE 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 764 KLENDIAEIMKMSGDNSSQLTKMNDELRLKERYVEELQLKLTKANENASFLQKSIEDMTLKAEQSQQEAAEKHEEEKkel 843
Cdd:TIGR02168 709 ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIE--- 785
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 844 erklsDLEKKMETSHNQCQELKAGYEKAtsetktkhEEILQNLRKTLLDTEDKLKGAREENSGLLQELEELRKQADKAK- 922
Cdd:TIGR02168 786 -----ELEAQIEQLKEELKALREALDEL--------RAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSe 852
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 923 ---SLTYLLTSAKKEIELMSEELRGLKSEKQLLSQEGNDLKLENGSLLSKLVELEAKIALLQGDQQKLWSVNETLNLEKE 999
Cdd:TIGR02168 853 dieSLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLE 932
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|..
gi 1622847186 1000 KF-LEEKQDAEKHYEQEHLNKEVLAVEREKLLKEINVAQEELLKINMENDSL 1050
Cdd:TIGR02168 933 GLeVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
657-1241 |
1.55e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.05 E-value: 1.55e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 657 IKEKENSLEAIKSKLDKAEDqHLVEMEETLNKLQE--------AEIKKE-----------KFAEASEEAVSVQRSMQETV 717
Cdd:COG1196 174 KEEAERKLEATEENLERLED-ILGELERQLEPLERqaekaeryRELKEElkeleaellllKLRELEAELEELEAELEELE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 718 NKLHQKEEQFNMLSSDLEKLRENLAEMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERYV 797
Cdd:COG1196 253 AELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEEL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 798 EELQLKLTKANENASFLQKSIEDMTLKAEQSQQEAAEKHEEEKKELERKLSDLEKKMETSHNQCQELK--AGYEKATSET 875
Cdd:COG1196 333 EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAqlEELEEAEEAL 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 876 KTKHEEILQNLRKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKSLTYLLTSAKKEIELMSEELRGLKSEKQLLSQE 955
Cdd:COG1196 413 LERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 956 GNDLKLENGSLLSKLVelEAKIALLQGDQQKLW-SVNETLNLEKEKFLEEKQDAEKHYEQEHLNKEVLAVEREKLLKEIN 1034
Cdd:COG1196 493 LLLLLEAEADYEGFLE--GVKAALLLAGLRGLAgAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAK 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1035 VAQEELLKINMENDSLQASKVSMQTLIEELQlskdALIAKTEKDQEERDHLADQIKKLITENFILAKDKDDIIQKLQSSY 1114
Cdd:COG1196 571 AGRATFLPLDKIRARAALAAALARGAIGAAV----DLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRL 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1115 EELVKDQKALVQDIEDLTAEKK----SALEKLSNLDNTCIALKVERDNALQNNRDLQLETDMLLHDQEKLNASLQAALQV 1190
Cdd:COG1196 647 REVTLEGEGGSAGGSLTGGSRRellaALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEAL 726
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 1622847186 1191 KQLLRSEASGLRAQLDDASKALRKAELETMQLQATNTSLTKLLEEIKARRA 1241
Cdd:COG1196 727 EEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIE 777
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
212-272 |
4.60e-12 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 71.25 E-value: 4.60e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622847186 212 LKIGDRVLVGGTKaGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLF 272
Cdd:COG5244 4 LSVNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIF 63
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
417-1147 |
1.40e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.10 E-value: 1.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 417 VEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRVQE-VAELRRRLESNKPAgd 495
Cdd:TIGR02169 232 KEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEkIGELEAEIASLERS-- 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 496 VDMSLSLLQEISSLQEKLEVTRTDHQREITSLKEhfgaREETHQKEIKALYTATEKLSKENESLKSKLEHANKENsdviA 575
Cdd:TIGR02169 310 IAEKERELEDAEERLAKLEAEIDKLLAEIEELER----EIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEF----A 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 576 LWKSKLetaiASHQQAMEELKVSFSKgLGTETAEFAELKTQIEKMRLDYQHEIENLQNQQdserSAHAKEMEALRAKlmk 655
Cdd:TIGR02169 382 ETRDEL----KDYREKLEKLKREINE-LKRELDRLQEELQRLSEELADLNAAIAGIEAKI----NELEEEKEDKALE--- 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 656 vIKEKENSLEAIKSKLDKAEDQH------LVEMEETLNKLQEAEIKKEKFAEASEEAVSVQRSMQE-----------TVN 718
Cdd:TIGR02169 450 -IKKQEWKLEQLAADLSKYEQELydlkeeYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEvlkasiqgvhgTVA 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 719 KLHQKEEQFNM----------------------------------------------LSSDLEKLRE--------NLAEM 744
Cdd:TIGR02169 529 QLGSVGERYATaievaagnrlnnvvveddavakeaiellkrrkagratflplnkmrdERRDLSILSEdgvigfavDLVEF 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 745 EAKFR--------------EKDEREEQLIKAKE-KLENDIAEIM-KMSGDNSSQLTKMNDELRLKERyVEELQLKLTKAN 808
Cdd:TIGR02169 609 DPKYEpafkyvfgdtlvveDIEAARRLMGKYRMvTLEGELFEKSgAMTGGSRAPRGGILFSRSEPAE-LQRLRERLEGLK 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 809 ENASFLQKSIEDMTLKAEQSQQeaaekheeekkelerKLSDLEKKMETSHNQCQELKaGYEKATSETKTKHEEILQNLRK 888
Cdd:TIGR02169 688 RELSSLQSELRRIENRLDELSQ---------------ELSDASRKIGEIEKEIEQLE-QEEEKLKERLEELEEDLSSLEQ 751
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 889 TLLDTEDKLKGAREENSGLLQELEELRKQAD--KAKSLTYLLTSAKKEIELMSEELRGLKSEKQLLSQEGNDLKLENGSL 966
Cdd:TIGR02169 752 EIENVKSELKELEARIEELEEDLHKLEEALNdlEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYL 831
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 967 LSKLVELEAKIALLQGDQQKLWSVNETLNLEKEKF---LEEKQDAEKHYEQEHLNkevLAVEREKLLKEINVAQEEL--- 1040
Cdd:TIGR02169 832 EKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELeeeLEELEAALRDLESRLGD---LKKERDELEAQLRELERKIeel 908
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1041 -LKINMENDSLQASKVSMQTLIEELQLSKDALIAKTEKDQEERDhlADQIKKLITENFILAKDKDDIIQKLQSSYEELVK 1119
Cdd:TIGR02169 909 eAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELS--LEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLK 986
|
810 820
....*....|....*....|....*...
gi 1622847186 1120 DQKALVQDIEDLTAEKKSALEKLSNLDN 1147
Cdd:TIGR02169 987 RLDELKEKRAKLEEERKAILERIEEYEK 1014
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
850-1567 |
2.72e-11 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 69.38 E-value: 2.72e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 850 LEKKMETSHNQCQELkagyEKATSETKTKHEEILQNLRKTLLDTEDKLKGAREENSGLLqeleELRKQADKAKSltyllt 929
Cdd:pfam15921 76 IERVLEEYSHQVKDL----QRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMA----DIRRRESQSQE------ 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 930 SAKKEIELMSEELRGLKSEKQLLSQEGNdlklengsllSKLVELEAKIALLQGDQQKLWSVNETLnlekekfleEKQDAE 1009
Cdd:pfam15921 142 DLRNQLQNTVHELEAAKCLKEDMLEDSN----------TQIEQLRKMMLSHEGVLQEIRSILVDF---------EEASGK 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1010 KHYEQEHLNK---EVLAVEREKLLKEINVA-------------QEELLKINMENDS---LQASKVSMQTLIEELQLSKDA 1070
Cdd:pfam15921 203 KIYEHDSMSTmhfRSLGSAISKILRELDTEisylkgrifpvedQLEALKSESQNKIellLQQHQDRIEQLISEHEVEITG 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1071 LIAKTEKDQEERDHLADQIKkLITENfilAKDKDDIIQKLQSSYEELVKDQKALVQDIEDLTAEKKSALEKLSNLDNTCI 1150
Cdd:pfam15921 283 LTEKASSARSQANSIQSQLE-IIQEQ---ARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSEL 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1151 A-LKVERDNALQNNRDLQLETDMLLHDQEKLNASLQAALQVKQLLRSEASG-------LRAQLDDASKALRKAE--LETM 1220
Cdd:pfam15921 359 TeARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGnsitidhLRRELDDRNMEVQRLEalLKAM 438
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1221 Q-------------LQATNTSLTKLleeikarravtDSECIQLLHEKETLAASERRLLAEKEELLSENRIITEKLHKCSE 1287
Cdd:pfam15921 439 KsecqgqmerqmaaIQGKNESLEKV-----------SSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQE 507
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1288 EAAHTEMSlNEKITYLTSEKEMASQKMTKLKKHQDSLLK---EKSALETQNG-------VLLAERENSIKAIGDLKR--- 1354
Cdd:pfam15921 508 KERAIEAT-NAEITKLRSRVDLKLQELQHLKNEGDHLRNvqtECEALKLQMAekdkvieILRQQIENMTQLVGQHGRtag 586
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1355 -------QCDQESANRRIIVQENMKLLGNIDALKKELQERKNEnqeLVASKCDLSLMLKEAQNAKKNLEKEHTHILQAKE 1427
Cdd:pfam15921 587 amqvekaQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSD---LELEKVKLVNAGSERLRAVKDIKQERDQLLNEVK 663
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1428 NLDAELNTCCSEKNILLRDSLNLQEECQKLS-----------EEIQEMQQSLILEQEARAKEKESSLYENNQL---HGRM 1493
Cdd:pfam15921 664 TSRNELNSLSEDYEVLKRNFRNKSEEMETTTnklkmqlksaqSELEQTRNTLKSMEGSDGHAMKVAMGMQKQItakRGQI 743
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622847186 1494 VLLEQEVEELRVCTEELQSEKFVLLQEKTKSEQEVAEIIEEKELLTAEAAQLAAHIKTLKSDFAALSKS--KAELQ 1567
Cdd:pfam15921 744 DALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVAldKASLQ 819
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1376-1957 |
5.20e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 68.17 E-value: 5.20e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1376 NIDALKKELQERKNENQELVASKCDLslmlkeaQNAKKNLEKEHTHILQAkenldaelntcCSEKNILLRDslnLQEECQ 1455
Cdd:PRK03918 166 NLGEVIKEIKRRIERLEKFIKRTENI-------EELIKEKEKELEEVLRE-----------INEISSELPE---LREELE 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1456 KLSEEIQEMQqSLILEQEARAKEKESSLYENNQLHGRMVLLEQEVEELRVCTEELQsEKFVLLQEKTKSEQEVAEIIEEK 1535
Cdd:PRK03918 225 KLEKEVKELE-ELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELE-EKVKELKELKEKAEEYIKLSEFY 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1536 ELLTAE-------AAQLAAHIKTLKSDFAALSKSKAELQELHSCLTKILDDL-QLNHEVTLAEKAQVMQDNQNLLaEKSE 1607
Cdd:PRK03918 303 EEYLDElreiekrLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLeELEERHELYEEAKAKKEELERL-KKRL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1608 MMLEKDELLKEKEMLAESYFILQKEISQLAKTNSHISANLLESQNENRTLRKDKNKLTLKIRELetlqsftaaqTAEDAM 1687
Cdd:PRK03918 382 TGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGREL----------TEEHRK 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1688 QIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLkENNLKNVEELNKSKELL-----------TVENQKMEEFRKEIETL 1756
Cdd:PRK03918 452 ELLEEYTAELKRIEKELKEIEEKERKLRKELREL-EKVLKKESELIKLKELAeqlkeleeklkKYNLEELEKKAEEYEKL 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1757 KQAAAQKSQQLSALQEENVKLAEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKSLP---SNTLRE-----SKFI--KDA 1826
Cdd:PRK03918 531 KEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVeelEERLKElepfyNEYLelKDA 610
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1827 DEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKSLHSV--VQTLESDKVKLELKVKNLELQLKENKRQLS 1904
Cdd:PRK03918 611 EKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEeeYEELREEYLELSRELAGLRAELEELEKRRE 690
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|...
gi 1622847186 1905 SSSGNTDTQADEDERAQESQQMIDFLNSVIVDLQRKNQDLKMKVEMMSEAALN 1957
Cdd:PRK03918 691 EIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKERALS 743
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
60-121 |
7.88e-11 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 67.40 E-value: 7.88e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622847186 60 VGERVWVNGNKpGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRP 121
Cdd:COG5244 6 VNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIFIRP 66
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1128-1759 |
1.33e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.88 E-value: 1.33e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1128 IEDLTAEKKSALEKLsnldntcialKVERDNALQ--------NNRDLQL---ETDMLLHDQEKLNASLQAALQVKQLLRS 1196
Cdd:COG1196 191 LEDILGELERQLEPL----------ERQAEKAERyrelkeelKELEAELlllKLRELEAELEELEAELEELEAELEELEA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1197 EASGLRAQLDDASKALRKAELETMQLQATNTSLTKLLEEIKARRAVTDSECIQLLHEKETLAASERRLLAEKEELLSENR 1276
Cdd:COG1196 261 ELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1277 IITEKLHKCSEEAAHTEMSLNEkityLTSEKEMASQKMTKLKKHQDSLLKEKSALETQNGVLLAERENSIKAIGDLKRQC 1356
Cdd:COG1196 341 ELEEELEEAEEELEEAEAELAE----AEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERL 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1357 DQESANRRIIVQENMKLLGNIDALKKELQERKNENQELVASKCDLSLMLKEAQNAKKNLEKEHTHILQAKENLDAELNTc 1436
Cdd:COG1196 417 ERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLL- 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1437 csekNILLRDSLNLQEECQKLSEEIQEMQQSLILEQEARAKEKESSLYENNQLHGRMV-LLEQEVEELRVCTEELQSEK- 1514
Cdd:COG1196 496 ----LLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQnIVVEDDEVAAAAIEYLKAAKa 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1515 -----FVLLQEKTKSEQEVAEIIEEKELLTAEAAQLAAHIKTLKSDFAALSKSKAELQELHSCLTKILDDLQLNHEVTLA 1589
Cdd:COG1196 572 gratfLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTL 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1590 EKAQVMQDNQNLLAEKSEMMLEKDELLKEKEMLAESyfILQKEISQLAKTNSHISANLLESQNENRTLRKDKNKLTLKIR 1669
Cdd:COG1196 652 EGEGGSAGGSLTGGSRRELLAALLEAEAELEELAER--LAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQ 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1670 ELETLQsfTAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEF 1749
Cdd:COG1196 730 LEAERE--ELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGPVNLLAIEEYEELEERYDFLSEQREDL 807
|
650
....*....|
gi 1622847186 1750 RKEIETLKQA 1759
Cdd:COG1196 808 EEARETLEEA 817
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
402-1144 |
3.28e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.85 E-value: 3.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 402 HVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRVQEVA 481
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLA 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 482 ELRRRLE--SNKPAGDVDMSLSLLQEISSLQEKLEVTRTDHQREITSLKEHFGAREETHQKeIKALYTATEKLSKENESL 559
Cdd:TIGR02168 313 NLERQLEelEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESR-LEELEEQLETLRSKVAQL 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 560 KSKLEHANKEnsdvIALWKSKLETAIASHQQAMEELKVSFSKGLGTETAEFAELKTQIEKMRLDYQHEIENLQNQQDSER 639
Cdd:TIGR02168 392 ELQIASLNNE----IERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELR 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 640 SAHAKEMEALRAKLMKViKEKENSLEAIKSKLDKAEDQHLVEMEETLNKLQEAEIK---------KEKFAEASEEA---- 706
Cdd:TIGR02168 468 EELEEAEQALDAAEREL-AQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILgvlselisvDEGYEAAIEAAlggr 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 707 -----VSVQRSMQETVNKLHQKEEQFNML----SSDLEKLRENLAEMEAKFREKDEREEQLIKAKEKLENDIAEIMkmSG 777
Cdd:TIGR02168 547 lqavvVENLNAAKKAIAFLKQNELGRVTFlpldSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLL--GG 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 778 ----DNSSQLTKMNDELRLKERYVEELQLKLTK--------ANENASFLQKSIEDMTLKAEqsqqeaaekheeeKKELER 845
Cdd:TIGR02168 625 vlvvDDLDNALELAKKLRPGYRIVTLDGDLVRPggvitggsAKTNSSILERRREIEELEEK-------------IEELEE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 846 KLSDLEKKMETSHNQCQELkagyekatsetktkhEEILQNLRKTLLDTEDKLKGAREENSGLLQELEELRKQADKA---- 921
Cdd:TIGR02168 692 KIAELEKALAELRKELEEL---------------EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLskel 756
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 922 KSLTYLLTSAKKEIELMSEELRGLKSEKQLLSQEGNDLKLENGSLLSKLVELEAKIALLQGDQQKLWSvnetlnlEKEKF 1001
Cdd:TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE-------RLESL 829
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1002 LEEKQDAEKHYEQEHLNKEVLAVEREKLLKEINVAQEELLKINMENDSLQASKVSMQTLIEELQLSKDALIAKTEKD--- 1078
Cdd:TIGR02168 830 ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELesk 909
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1079 ----QEERDHLADQIKKLITENFILAKDKDDIIQKLQSSYEELVKDQKALVQDIEDLTAEKKSALEKLSN 1144
Cdd:TIGR02168 910 rselRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLEN 979
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
614-1468 |
3.51e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 65.52 E-value: 3.51e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 614 KTQIEKMRLDYQHEIENLQNQQDSERSAHAKEMEALRAKLMKV------IKEKENSLEAIKSKLDKAEDQHLVEMEETLN 687
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLqtklqeMQMERDAMADIRRRESQSQEDLRNQLQNTVH 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 688 KLQEAEIKKEKFAEASEEAVSVQRSMqetvnklhqkeeqfnMLSSD--LEKLRENLAEMEAKFREKDEREEQLikAKEKL 765
Cdd:pfam15921 153 ELEAAKCLKEDMLEDSNTQIEQLRKM---------------MLSHEgvLQEIRSILVDFEEASGKKIYEHDSM--STMHF 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 766 ENDIAEIMKMSGDNSSQLTKMNDELRLKERYVEELQlklTKANENASFLQKSIEDMTLKAEQSQQEAAEKHEEEKKELER 845
Cdd:pfam15921 216 RSLGSAISKILRELDTEISYLKGRIFPVEDQLEALK---SESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARS 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 846 KLSDLEKKMETSHNQCQELKAGYEKATSETKTKHEEILQNLRKTLLDTEDKLkgareensgllqelEELRKQadkakslt 925
Cdd:pfam15921 293 QANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKI--------------EELEKQ-------- 350
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 926 ylltsakkeIELMSEELRGLKSEKQLLSQEGNDLKLENGSLLSKLVELEAKIALLQGDQQKLWSVNETLNLEKEKFLEEK 1005
Cdd:pfam15921 351 ---------LVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRREL 421
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1006 QDaeKHYEQEHLNKEVLAV------EREKLLKEINVAQEELLKINMENDSLQASKVSMQTLIEELQLSKDALiaktekDQ 1079
Cdd:pfam15921 422 DD--RNMEVQRLEALLKAMksecqgQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTL------ES 493
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1080 EERDhLADQIKKLitenfilaKDKDDIIQKLQSSYEELVKDQKALVQDIEDLTAEKksalEKLSNLDNTCIALKV---ER 1156
Cdd:pfam15921 494 SERT-VSDLTASL--------QEKERAIEATNAEITKLRSRVDLKLQELQHLKNEG----DHLRNVQTECEALKLqmaEK 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1157 DNALQNNRDlQLETDMLLHDQEKLNAslqAALQVKqllrseasglRAQLDdasKALRKAELETMQLQATNTSLTKLLEEI 1236
Cdd:pfam15921 561 DKVIEILRQ-QIENMTQLVGQHGRTA---GAMQVE----------KAQLE---KEINDRRLELQEFKILKDKKDAKIREL 623
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1237 KARRAVTDSECIQLLHEKETLAASERRLLAEKEELLSENRIITEKLHKCSEEAAHTEMSLNEKitylTSEKEMASQKMT- 1315
Cdd:pfam15921 624 EARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNK----SEEMETTTNKLKm 699
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1316 KLKKHQDSLLKEKSALETQNGvllaERENSIKAIGDLKRQCdqeSANRriivqenmkllGNIDALKKELQerknenqelv 1395
Cdd:pfam15921 700 QLKSAQSELEQTRNTLKSMEG----SDGHAMKVAMGMQKQI---TAKR-----------GQIDALQSKIQ---------- 751
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622847186 1396 askcdlslMLKEAQNakkNLEKEHTHILQAKENLDAELNTCCSEKNILLRDSLNLQEECQKLSEEIQEMQQSL 1468
Cdd:pfam15921 752 --------FLEEAMT---NANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVAL 813
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
352-960 |
3.83e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.34 E-value: 3.83e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 352 ALQEALKEKQqhIEQLLAERDLERAEVAKATSHVGEIEQELALARdghdQHVLELEAKMDQLRTMVEAADREKVELLNQL 431
Cdd:COG1196 217 ELKEELKELE--AELLLLKLRELEAELEELEAELEELEAELEELE----AELAELEAELEELRLELEELELELEEAQAEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 432 EEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRVQEVAELRRRLESNKPAgdVDMSLSLLQEISSLQE 511
Cdd:COG1196 291 YELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEE--LEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 512 KLEVTRTDHQREITSLKEhfgaREETHQKEIKALYTATEKLSKENESLKSKLEHANKENSDVIALWKSKLETAIASHQQA 591
Cdd:COG1196 369 EAEAELAEAEEELEELAE----ELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEAL 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 592 MEELKvsfskglgtETAEFAELKTQIEKMRLDYQHEIENLQNQQDSERSAHAKEmEALRAKLMKVIKEKENSLEAIKSKL 671
Cdd:COG1196 445 EEAAE---------EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA-AARLLLLLEAEADYEGFLEGVKAAL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 672 DKAEDQHLvemEETLNKLQEAEIKKEKFAEASEEAVSVQRSMQETV----------NKLHQKEEQFNMLSSDLEKLRENL 741
Cdd:COG1196 515 LLAGLRGL---AGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEvaaaaieylkAAKAGRATFLPLDKIRARAALAAA 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 742 AEMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERYVEELQLKLTKANENASFLQKSIEDM 821
Cdd:COG1196 592 LARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELL 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 822 TLKAEQSQQEAAEKHEEEKKELERKLSDLEKKMETSHNQCQELKAGYEKATSETKTKHEEILQNLRKTLLDTEDKLKGAR 901
Cdd:COG1196 672 AALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEE 751
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622847186 902 -EENSGLLQELEELRKQADKaksltylltsAKKEIELMS-------EELRGLKSEKQLLSQEGNDLK 960
Cdd:COG1196 752 aLEELPEPPDLEELERELER----------LEREIEALGpvnllaiEEYEELEERYDFLSEQREDLE 808
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
644-1241 |
4.32e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 65.09 E-value: 4.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 644 KEMEALRAKLMKVIKEKENSLEAIKSKLDkaedqhlvEMEETLNKLQEAEIKKEKFAEASEEAVSVQRSMQETVNKLHQK 723
Cdd:PRK03918 172 KEIKRRIERLEKFIKRTENIEELIKEKEK--------ELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEEL 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 724 EEQfnmlssdLEKLRENLAEMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNS--SQLTKMNDELRLKERYVEELq 801
Cdd:PRK03918 244 EKE-------LESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEeyIKLSEFYEEYLDELREIEKR- 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 802 lkLTKANENASFLQKSIEDMTLKAEQSQQEAAEKHEEEKKELERKLSdlEKKMETSHNQCQELKAGYEKATSETKTKHEE 881
Cdd:PRK03918 316 --LSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEER--HELYEEAKAKKEELERLKKRLTGLTPEKLEK 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 882 ILQNLRKTLLDTEDKLKGAREENSGLLQELEELRKQADKaksltylLTSAKKEIELMSEELRGlKSEKQLLSQEGNDLKl 961
Cdd:PRK03918 392 ELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEE-------LKKAKGKCPVCGRELTE-EHRKELLEEYTAELK- 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 962 engSLLSKLVELEAKIALLQGDQQKLwsvnETLNLEKEKFLEEKQDAEKHYEQEHLNKEVLAVEREKLLKEINVAQEELL 1041
Cdd:PRK03918 463 ---RIEKELKEIEEKERKLRKELREL----EKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLI 535
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1042 KINMENDSLQASkvsmqtlIEELQLSKDALIAKTEKDQEERDHLADQIKKLITENFILAKDKDDIIQKLQSSYEELV--- 1118
Cdd:PRK03918 536 KLKGEIKSLKKE-------LEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLelk 608
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1119 ---KDQKALVQDIEDLTAEKKSALEKLSNLDNTCIALKVERDNALQN-NRDLQLETDMLLHDQEKLNASLQAALQVKQLL 1194
Cdd:PRK03918 609 daeKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKySEEEYEELREEYLELSRELAGLRAELEELEKR 688
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 1622847186 1195 RSEASGLRAQLDDASKALRKAELETMQLQATNTSLTKLLEEIKARRA 1241
Cdd:PRK03918 689 REEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKA 735
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
359-772 |
5.13e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.08 E-value: 5.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 359 EKQQHIEQLlaerdleRAEVAKATSHVGEIEQELALARDGHDqhvlELEAKMDQLRTMVEAADREKVELLNQLEEEKRKV 438
Cdd:TIGR02168 674 ERRREIEEL-------EEKIEELEEKIAELEKALAELRKELE----ELEEELEQLRKELEELSRQISALRKDLARLEAEV 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 439 EDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRVQEVAELRRRLEsnkpagdvDMSLSLLQEISSLQEKlevtrt 518
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE--------QLKEELKALREALDEL------ 808
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 519 dhQREITSLKEHFGA---REETHQKEIKALYTATEKLSKENESLKSKLEHANKENSDvialwkskLETAIASHQQAMEEL 595
Cdd:TIGR02168 809 --RAELTLLNEEAANlreRLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEE--------LEELIEELESELEAL 878
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 596 kvsfskglgteTAEFAELKTQIEKMRLDYqheiENLQNQQDSERSaHAKEMEALRAKLMKVIKEKENSLEAIKSKLDKAE 675
Cdd:TIGR02168 879 -----------LNERASLEEALALLRSEL----EELSEELRELES-KRSELRRELEELREKLAQLELRLEGLEVRIDNLQ 942
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 676 DQHLVEMEETlnkLQEAEIKKEKFAEASEEAvsvqrsmQETVNKLHQKEEQF---NMLSSdleklrENLAEMEAKFREKD 752
Cdd:TIGR02168 943 ERLSEEYSLT---LEEAEALENKIEDDEEEA-------RRRLKRLENKIKELgpvNLAAI------EEYEELKERYDFLT 1006
|
410 420
....*....|....*....|
gi 1622847186 753 EREEQLIKAKEKLENDIAEI 772
Cdd:TIGR02168 1007 AQKEDLTEAKETLEEAIEEI 1026
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
730-1556 |
5.62e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 64.99 E-value: 5.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 730 LSSDLEKLRENLAEMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERYVEELQLKLTKANE 809
Cdd:pfam02463 147 IAMMKPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYL 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 810 NASFLQKSIE-----------------DMTLKAEQSQQEAAEKHEEEKKELERKLSDLEKKMETSHNQCQELKAGYEKAT 872
Cdd:pfam02463 227 LYLDYLKLNEeridllqellrdeqeeiESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLE 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 873 SETKTKHEEI--LQNLRKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKSLTYLLTSAKKEIELMSEELRGLKSEKQ 950
Cdd:pfam02463 307 RRKVDDEEKLkeSEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERL 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 951 LLSQEGNDLKLENGSLLSKLVELEAKIALLQGDQQK--------LWSVNETLNLEKEKFLEEKQDAEKHYEQEHLNKEVL 1022
Cdd:pfam02463 387 SSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKeekkeeleILEEEEESIELKQGKLTEEKEELEKQELKLLKDELE 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1023 AVEREKLLKEINVAQEELLKINMENDSLQASKVSMQTLIEELQLSKDALIAKTEKDQEERDHLADQIKKLITENFILA-- 1100
Cdd:pfam02463 467 LKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAis 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1101 ----------KDKDDIIQKLQSSYEELVKDQKALVQDIEDLTAEKKSALEKLSNLDNTCI-----ALKVERDNALQNNRD 1165
Cdd:pfam02463 547 tavivevsatADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAqldkaTLEADEDDKRAKVVE 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1166 LQLETDMLLHDQEKLNASLQAALQVKQLLRSEASGLRaqLDDASKALRKAELETMQLQATNTSLTKLLEEIKARRAVTDS 1245
Cdd:pfam02463 627 GILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSE--VKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKK 704
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1246 ECIQLLHEKETLAASERRLLAEKEELLSENRIITEKLHKCSEEAAHTEMSLNEKITYLTSEKEMASQKMTKLKKHQDSLL 1325
Cdd:pfam02463 705 EQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTE 784
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1326 KEKSALETQNGVLLAERENSIKAIGDLKRQCDQESANRRIIVQENMKLLgniDALKKELQERKNENQELVASKCDLSLML 1405
Cdd:pfam02463 785 KLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEE---ELEELALELKEEQKLEKLAEEELERLEE 861
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1406 KEAQNAKKNLEKEHTHILQAKENLDAELNTCCSEKNILLRDSLNLQEECQKLSEEIQ---EMQQSLILEQEARAKEKESS 1482
Cdd:pfam02463 862 EITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEieeRIKEEAEILLKYEEEPEELL 941
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622847186 1483 LYENNQLHGRMVLLEQEVEELRVCTEELQSEKFV----LLQEKTKSEQEVAEIIEEKELLTAEAAQLAAHIKTLKSDF 1556
Cdd:pfam02463 942 LEEADEKEKEENNKEEEEERNKRLLLAKEELGKVnlmaIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRL 1019
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
351-948 |
9.35e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 63.93 E-value: 9.35e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 351 TALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEqELALARDGHDQHVLELEAKMDQLRTMVEaadrEKVELLNQ 430
Cdd:PRK03918 203 EEVLREINEISSELPELREELEKLEKEVKELEELKEEIE-ELEKELESLEGSKRKLEEKIRELEERIE----ELKKEIEE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 431 LEEEKRKVEDLQfRVEEESITKGDLEVATVSEKSRIMELEKDLALRVQEVAELRRRLESNKPAGDvdmslSLLQEISSLQ 510
Cdd:PRK03918 278 LEEKVKELKELK-EKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLE-----ELKKKLKELE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 511 EKLEVTRTDHQ--REITSLKEhfgaREETHQKEIKALytATEKLSKENESLKSKLEHANKENSDVIALwKSKLETAIASH 588
Cdd:PRK03918 352 KRLEELEERHElyEEAKAKKE----ELERLKKRLTGL--TPEKLEKELEELEKAKEEIEEEISKITAR-IGELKKEIKEL 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 589 QQAMEELKVsfskglgtetaefAELKTQIEKMRLDYQHEIENLqnqqdserSAHAKEMEALRAKLmKVIKEKENSLEAIK 668
Cdd:PRK03918 425 KKAIEELKK-------------AKGKCPVCGRELTEEHRKELL--------EEYTAELKRIEKEL-KEIEEKERKLRKEL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 669 SKLDK--AEDQHLVEMEETLNKLQEAEIKKEKF-AEASEEAVSVQRSMQETVNKLhqkEEQFNMLSSDLEKLRENLAEME 745
Cdd:PRK03918 483 RELEKvlKKESELIKLKELAEQLKELEEKLKKYnLEELEKKAEEYEKLKEKLIKL---KGEIKSLKKELEKLEELKKKLA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 746 AKFREKDEREEQLIKAKEKLENDiaeimkmsgdNSSQLTKMNDELRLKERYVEELqLKLTKANENASFLQKSIEDMTLKA 825
Cdd:PRK03918 560 ELEKKLDELEEELAELLKELEEL----------GFESVEELEERLKELEPFYNEY-LELKDAEKELEREEKELKKLEEEL 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 826 EQSqqeaaekheeekkelERKLSDLEKKMETSHNQCQELKAGYEKATSETKTKHEEILQNLRKTLLDTEDKLKGAREENS 905
Cdd:PRK03918 629 DKA---------------FEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIK 693
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 1622847186 906 GLLQELEELRKQADKAKSLTYLLTSAKKEIELMSEELRGLKSE 948
Cdd:PRK03918 694 KTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKAL 736
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1299-1944 |
3.34e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 3.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1299 KITYLTSEKEMASQKMTKLKKHQDSLLKEKSALETQNGVLLAERENSIKAIGDLKRQCDQESANRRIIVQENMKLLGNID 1378
Cdd:TIGR02168 226 ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQ 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1379 ALKKELQERKNENQELVASKCDLSLMLKEAQNAKKNLEKEHTHILQAKENLDAELNTCCSEKNILLRDSLNLQEECQKLS 1458
Cdd:TIGR02168 306 ILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLR 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1459 EEIQEMQQSL----------------------ILEQEARAKEKESSLYENNQLHGRMVLLEQEVEELRVCTEELQSEKFV 1516
Cdd:TIGR02168 386 SKVAQLELQIaslnneierlearlerledrreRLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEE 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1517 LLQEKTKSEQEVAEIIEEKELLTAEAAQLAAHIKTLKSDFAALSKSKAELQELHSCLTKILDDLQLNHEVTLAEKAQVMQ 1596
Cdd:TIGR02168 466 LREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGG 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1597 DNQNLLAEKSEMMLEKDELLKEKEmLAESYFILQKEISQLAKTNSHisANLLESQNENRTLRKDKNKLTLKIRELET--L 1674
Cdd:TIGR02168 546 RLQAVVVENLNAAKKAIAFLKQNE-LGRVTFLPLDSIKGTEIQGND--REILKNIEGFLGVAKDLVKFDPKLRKALSylL 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1675 QSFTAAQTAEDAMQIMEQMTKEktETLASLEDT------------KQTNAKLQNeldtlKENNLKNVE-ELNKSKELLTV 1741
Cdd:TIGR02168 623 GGVLVVDDLDNALELAKKLRPG--YRIVTLDGDlvrpggvitggsAKTNSSILE-----RRREIEELEeKIEELEEKIAE 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1742 ENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKSLPSNTLRESK 1821
Cdd:TIGR02168 696 LEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE 775
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1822 FIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKslhSVVQTLESDKVKLELKVKNLELQLKENKR 1901
Cdd:TIGR02168 776 ELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLR---ERLESLERRIAATERRLEDLEEQIEELSE 852
|
650 660 670 680
....*....|....*....|....*....|....*....|....
gi 1622847186 1902 QLSSSSGN-TDTQADEDERAQESQQMIDFLNSVIVDLQRKNQDL 1944
Cdd:TIGR02168 853 DIESLAAEiEELEELIEELESELEALLNERASLEEALALLRSEL 896
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
417-1240 |
3.39e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.39 E-value: 3.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 417 VEAADREKVELLNQLEEEKRKVEDLQFRVEEesitkgdlevatVSEKSRIMELEKDLALRVQEVAELRRRLEsnkpagdv 496
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDE------------KRQQLERLRREREKAERYQALLKEKREYE-------- 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 497 dmslslLQEISSLQEKLEVTRTDHQREITSLkehfgareethQKEIKALYTATEKLSKENESLKSKLEHANKENSDVial 576
Cdd:TIGR02169 225 ------GYELLKEKEALERQKEAIERQLASL-----------EEELEKLTEEISELEKRLEEIEQLLEELNKKIKDL--- 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 577 wkskletaiashqqaMEELKVSFSKGLGTETAEFAELKTQIEkmrlDYQHEIENLQNQQ---DSERSAHAKEMEALRAKL 653
Cdd:TIGR02169 285 ---------------GEEEQLRVKEKIGELEAEIASLERSIA----EKERELEDAEERLaklEAEIDKLLAEIEELEREI 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 654 MKVIKEKENSLEAIKSKLDkaedqhlvEMEETLNKLQEAEIK----KEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNM 729
Cdd:TIGR02169 346 EEERKRRDKLTEEYAELKE--------ELEDLRAELEEVDKEfaetRDELKDYREKLEKLKREINELKRELDRLQEELQR 417
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 730 LSSDLEKLRENLAEMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERYVEELQLKLTKANE 809
Cdd:TIGR02169 418 LSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEA 497
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 810 NASFLQKSIED-----MTLKAE---------QSQQEAAEKHEEEKKELERKLSDLEKKMETSHNQCQEL----KAGYEKA 871
Cdd:TIGR02169 498 QARASEERVRGgraveEVLKASiqgvhgtvaQLGSVGERYATAIEVAAGNRLNNVVVEDDAVAKEAIELlkrrKAGRATF 577
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 872 TSETKTKHEEILQNLRKT---------LLDTEDKLKGARE---ENSGLLQELEELRKQ---------------------- 917
Cdd:TIGR02169 578 LPLNKMRDERRDLSILSEdgvigfavdLVEFDPKYEPAFKyvfGDTLVVEDIEAARRLmgkyrmvtlegelfeksgamtg 657
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 918 -ADKAKSLTYLLTSAKKEIELMSEELRGLKSEKQLLSQEGNDLKLENGSLLSKLVELEAKIALLQGDQQKLWSVNETLN- 995
Cdd:TIGR02169 658 gSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKe 737
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 996 --LEKEKFLEEKQD--AEKHYEQEHLNKEVLAVERE--KLLKEIN-----VAQEELLKINMENDSLQASKVSMQTLIEEL 1064
Cdd:TIGR02169 738 rlEELEEDLSSLEQeiENVKSELKELEARIEELEEDlhKLEEALNdlearLSHSRIPEIQAELSKLEEEVSRIEARLREI 817
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1065 QLSKDALIAKTEKDQEERDHLADQIkklitenfILAKDKDDIIQKLQssyEELVKDQKALVQDIEDLTAEKKSALEKLSN 1144
Cdd:TIGR02169 818 EQKLNRLTLEKEYLEKEIQELQEQR--------IDLKEQIKSIEKEI---ENLNGKKEELEEELEELEAALRDLESRLGD 886
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1145 LDNTCIALKVERDNALQNNRDLQLETDMLLHDQEKLNASLQAAL-QVKQLLR-----SEASGLRAQLDDASKALRKAELE 1218
Cdd:TIGR02169 887 LKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEeELSEIEDpkgedEEIPEEELSLEDVQAELQRVEEE 966
|
890 900
....*....|....*....|..
gi 1622847186 1219 TMQLQATNTSLTKLLEEIKARR 1240
Cdd:TIGR02169 967 IRALEPVNMLAIQEYEEVLKRL 988
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
357-816 |
3.97e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 62.06 E-value: 3.97e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 357 LKEKQQHIEQLLAERDLE----RAEVAKATSHVGEIEQELALARDG-------HDQHVLELEAKMDQLRTMVEAADREKV 425
Cdd:pfam15921 262 LQQHQDRIEQLISEHEVEitglTEKASSARSQANSIQSQLEIIQEQarnqnsmYMRQLSDLESTVSQLRSELREAKRMYE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 426 ELLNQLEEekrkvedlQFRVEEESITKGDLEVATVSEKSRIM--ELEKDLALRVQEVAELRRRLESNKPAGDVDMSLSLL 503
Cdd:pfam15921 342 DKIEELEK--------QLVLANSELTEARTERDQFSQESGNLddQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSIT 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 504 ------------QEISSLQEKLEVTRTDHQREITSLKEHFGAREETHQKE---IKALYTATEKLSKENESLKSK---LEH 565
Cdd:pfam15921 414 idhlrrelddrnMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVsslTAQLESTKEMLRKVVEELTAKkmtLES 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 566 ANKENSDVIALWKSKLETAIASHQQAME-----ELKVSFSKGLGTETAEFAELKTQIEKMRLDY----------QHEIEN 630
Cdd:pfam15921 494 SERTVSDLTASLQEKERAIEATNAEITKlrsrvDLKLQELQHLKNEGDHLRNVQTECEALKLQMaekdkvieilRQQIEN 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 631 LqNQQDSERSAHAKEMEALRAKLMKVIKEKENSLEAIKSKLDKaEDQHLVEMEEtlnKLQEAEIKKEKFAEASEEAVSVQ 710
Cdd:pfam15921 574 M-TQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDK-KDAKIRELEA---RVSDLELEKVKLVNAGSERLRAV 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 711 RSMQET----VNKLHQKEEQFNMLSSDLEKLRENlaemeakFREKDEREE--------QLIKAKEKLENDIAEIMKMSGD 778
Cdd:pfam15921 649 KDIKQErdqlLNEVKTSRNELNSLSEDYEVLKRN-------FRNKSEEMEtttnklkmQLKSAQSELEQTRNTLKSMEGS 721
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 1622847186 779 NSSQL---TKMNDELRLKERYVEELQLK-------LTKANENASFLQK 816
Cdd:pfam15921 722 DGHAMkvaMGMQKQITAKRGQIDALQSKiqfleeaMTNANKEKHFLKE 769
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
390-991 |
4.57e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.88 E-value: 4.57e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 390 QELALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEesiTKGDLEVATvsekSRIMEL 469
Cdd:COG1196 228 ELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEE---AQAEEYELL----AELARL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 470 EKDLALRVQEVAELRRRLESnkpagdvdmslsLLQEISSLQEKLEvtrtDHQREITSLKEHFGAREETHQKEIKALYTAT 549
Cdd:COG1196 301 EQDIARLEERRRELEERLEE------------LEEELAELEEELE----ELEEELEELEEELEEAEEELEEAEAELAEAE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 550 EKLSKENESLKSKLEHANKENSDVIALwksklETAIASHQQAMEELKvsfskglgTETAEFAELKTQIEKMRLDYQHEIE 629
Cdd:COG1196 365 EALLEAEAELAEAEEELEELAEELLEA-----LRAAAELAAQLEELE--------EAEEALLERLERLEEELEELEEALA 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 630 NLQNQQDSERsAHAKEMEALRAKLMKVIKEKENSLEAIKSKLDKAEDQHLVEMEETLNKLQEAEIKKEKFAEASEEAVSV 709
Cdd:COG1196 432 ELEEEEEEEE-EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGV 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 710 QRsmQETVNKLHQKEEQFNMLSSDLEKLRENLAE-----MEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLT 784
Cdd:COG1196 511 KA--ALLLAGLRGLAGAVAVLIGVEAAYEAALEAalaaaLQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAAL 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 785 KMNDELRLKERYVEELQLKLTKANENASFLQKSIEDMTLKAEQSQQEAAEKHEEEKKELERKLSDlekkmetshnqcQEL 864
Cdd:COG1196 589 AAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEG------------EGG 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 865 KAGYEKATSETKTKHEEILQNLRKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKSLTYLLTSAKKEIELMSEELRG 944
Cdd:COG1196 657 SAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREE 736
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 1622847186 945 LKSEKQLLSQEGNDLKLENGSLLSKLVELEAKIALLQGDQQKLWSVN 991
Cdd:COG1196 737 LLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGPVN 783
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
407-1193 |
6.26e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 61.29 E-value: 6.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 407 EAKMDQLRTMVEAADREKVELLnqLEEEKRKVEDLQFRVEEESITKGDLE------VATVSEKSRIMELEKDLALRV--- 477
Cdd:pfam15921 58 EVELDSPRKIIAYPGKEHIERV--LEEYSHQVKDLQRRLNESNELHEKQKfylrqsVIDLQTKLQEMQMERDAMADIrrr 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 478 --QEVAELRRRLESNKPAGDVDMSLS--LLQEISSLQEKLEVTRTDHQREITSLKEHFGAREETHQKEI----------- 542
Cdd:pfam15921 136 esQSQEDLRNQLQNTVHELEAAKCLKedMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIyehdsmstmhf 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 543 KALYTATEKLSKENES----LKSKLEHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKGLGTETAEFAELKTQIE 618
Cdd:pfam15921 216 RSLGSAISKILRELDTeisyLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQAN 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 619 KMrldyQHEIENLQNQQDSERSAHAKEMEALRAKLMKVIKEKENSLEAIKSKLDKAEDQHLVEMEEtlnkLQEAEIKKEK 698
Cdd:pfam15921 296 SI----QSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSE----LTEARTERDQ 367
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 699 FaeaSEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRE----NLAEMEAKFREKDEREEQLikakEKLEndiAEIMK 774
Cdd:pfam15921 368 F---SQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDrdtgNSITIDHLRRELDDRNMEV----QRLE---ALLKA 437
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 775 MSGDNSSQLTKMNDELRLKERYVEELQLKLTKANENASFLQKSIEDMTLKaeqsqqeaaekhEEEKKELERKLSDLEKKM 854
Cdd:pfam15921 438 MKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAK------------KMTLESSERTVSDLTASL 505
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 855 ETSHNQCQELKAGYEKATSETKTKHEEiLQNLRktllDTEDKLKGAREENSGLLQELeelrkqADKAKSLTYLLTSAKKE 934
Cdd:pfam15921 506 QEKERAIEATNAEITKLRSRVDLKLQE-LQHLK----NEGDHLRNVQTECEALKLQM------AEKDKVIEILRQQIENM 574
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 935 IELMSEELR---GLKSEKQLLSQEGNDLKLENGSLL-------SKLVELEAKIALLQGDQQKLWSVN-------ETLNLE 997
Cdd:pfam15921 575 TQLVGQHGRtagAMQVEKAQLEKEINDRRLELQEFKilkdkkdAKIRELEARVSDLELEKVKLVNAGserlravKDIKQE 654
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 998 KEKFLEEKQDAEKHYEQEHLNKEVLA-----------VEREKLLKEINVAQEELLKI-----NMENDSLQASKVS--MQT 1059
Cdd:pfam15921 655 RDQLLNEVKTSRNELNSLSEDYEVLKrnfrnkseemeTTTNKLKMQLKSAQSELEQTrntlkSMEGSDGHAMKVAmgMQK 734
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1060 LIEELQLSKDALIAKTEkdqeerdHLADQIKKLITENFILAKDKDDIIQKLQSsyeeLVKDQKALVQDIEDLTAEKKSAL 1139
Cdd:pfam15921 735 QITAKRGQIDALQSKIQ-------FLEEAMTNANKEKHFLKEEKNKLSQELST----VATEKNKMAGELEVLRSQERRLK 803
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*
gi 1622847186 1140 EKLSNLDntcialkVERDNALQNNRDLQletDMLL-HDQEKLNASLQAALQVKQL 1193
Cdd:pfam15921 804 EKVANME-------VALDKASLQFAECQ---DIIQrQEQESVRLKLQHTLDVKEL 848
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
869-1683 |
6.55e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.24 E-value: 6.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 869 EKATSETKTKHEEILQNLRKTLLDTEdkLKGAREENSGLLQELEELRKQADKaksLTYLLTSAKKEIELMSEELRGLKSE 948
Cdd:TIGR02169 206 EREKAERYQALLKEKREYEGYELLKE--KEALERQKEAIERQLASLEEELEK---LTEEISELEKRLEEIEQLLEELNKK 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 949 -KQLLSQEGNDLKLENGSLLSKLVELEAKIALLQGDQQKLWSVNETLNLEKEKFLEEKQDAEKHYEQEHLNKEVLAVERE 1027
Cdd:TIGR02169 281 iKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYA 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1028 KLLKEINVAQEELLKINMENDSLQASKVSMQTLIEELQLSKDALIAKTEKDQEERDHLADQ----------IKKLITENF 1097
Cdd:TIGR02169 361 ELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEEladlnaaiagIEAKINELE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1098 ILAKDKDDIIQKLQSSYEELVKDQKALVQDIEDLTAEKKSALEKLSNLDNTCIALKVERDNALQNNRDLQLETDMLLHDQ 1177
Cdd:TIGR02169 441 EEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASI 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1178 EKLNASLQAALQVK---QLLRSEASGLRAQ---LDDASKALRKAE-LETMQL-QATNTSLTKLLEEIKARRAVTDSECIQ 1249
Cdd:TIGR02169 521 QGVHGTVAQLGSVGeryATAIEVAAGNRLNnvvVEDDAVAKEAIElLKRRKAgRATFLPLNKMRDERRDLSILSEDGVIG 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1250 LLHE----------------KETLAASErrlLAEKEELLSENRIITEKLHKCSEEAAHTEMSLNEKITYLTS-----EKE 1308
Cdd:TIGR02169 601 FAVDlvefdpkyepafkyvfGDTLVVED---IEAARRLMGKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSrsepaELQ 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1309 MASQKMTKLKKHQDSLLKEKSALETQNGVLLAERENSIKAIGDLKRQCDQESANRRIIVQENMKLLGNIDALKKELQERK 1388
Cdd:TIGR02169 678 RLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVK 757
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1389 NENQELVASKCDLSLMLKEAQNAKKNLEKEHTHilQAKENLDAELNtccseknillrdslNLQEECQKLSEEIQEMQQSL 1468
Cdd:TIGR02169 758 SELKELEARIEELEEDLHKLEEALNDLEARLSH--SRIPEIQAELS--------------KLEEEVSRIEARLREIEQKL 821
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1469 ileqEARAKEKESSLYENNQLHGRMVLLEQEVEELRVCTEELQSEKFVLLQEKTKSEQEVAEIIEEKELLTAEAAQLAAH 1548
Cdd:TIGR02169 822 ----NRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQ 897
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1549 IKTLKSdfaALSKSKAELQELHScltkilddlqlnHEVTLAEKAQVMQDNQNLLAEKSEMMLEKDELLKEKEMLAESYFI 1628
Cdd:TIGR02169 898 LRELER---KIEELEAQIEKKRK------------RLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQR 962
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622847186 1629 LQKEISQLAKTN-------SHISANLLESQNENRTLRKDKNKLTLKIRELETL--QSFTAAQTA 1683
Cdd:TIGR02169 963 VEEEIRALEPVNmlaiqeyEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKkrEVFMEAFEA 1026
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
630-1237 |
6.82e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 61.19 E-value: 6.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 630 NLQNQQDSERsahaKEMEALRAKLMKVIKEKENSLEAI-KSKLDKAEDQHLVEMEETLNKLQEAEIKKeKFAEASEEAVS 708
Cdd:TIGR04523 26 NIANKQDTEE----KQLEKKLKTIKNELKNKEKELKNLdKNLNKDEEKINNSNNKIKILEQQIKDLND-KLKKNKDKINK 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 709 VQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLAEMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMND 788
Cdd:TIGR04523 101 LNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEK 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 789 ELRLKERYVEELQLKLTKANENASFLQKSIEDM-TLKAEQSQ-QEAAEKHEEEKKELERKLSDLEKKMETSHNQCQELKA 866
Cdd:TIGR04523 181 EKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNkSLESQISElKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKD 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 867 GYEKATSETKTKHEEILQNlRKTLLDTEDKLKGAREENSGLLQEleelrKQADKAKSLTYLLTSAKKEIELMSEELRG-- 944
Cdd:TIGR04523 261 EQNKIKKQLSEKQKELEQN-NKKIKELEKQLNQLKSEISDLNNQ-----KEQDWNKELKSELKNQEKKLEEIQNQISQnn 334
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 945 -----LKSEKQLLSQEGNDLKLENGSLLSKLVELEAKIALLQGDQQKLWSVNETLNLEKEKFLEEKQDAEKHYEQEHLNK 1019
Cdd:TIGR04523 335 kiisqLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQI 414
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1020 EVLAVEREKLLKEINVAQEELLKINMENDSLQASKVSMQTLIEELQLSKDAL---IAKTEKDQEERDHLADQIKKLITEN 1096
Cdd:TIGR04523 415 KKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLetqLKVLSRSINKIKQNLEQKQKELKSK 494
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1097 FILAKDKDDIIQKLQSSYEELVKDQKALVQDIEDLTAEKKSALEKLSNL---------DNTCIALKVERDNALQNNRDLQ 1167
Cdd:TIGR04523 495 EKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLedelnkddfELKKENLEKEIDEKNKEIEELK 574
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622847186 1168 LETDMLLHDQEKLNASLQAALQVKQLLRSE-------ASGLRAQLDDASKALRKAELETMQLQATNTSLTKLLEEIK 1237
Cdd:TIGR04523 575 QTQKSLKKKQEEKQELIDQKEKEKKDLIKEieekekkISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIK 651
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
635-1471 |
1.38e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 60.37 E-value: 1.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 635 QDSERSAHAKEMEALRAKLMKVIKEKENSLEAIKSKLDKAEDQHLVEMEETLNKLQEAEIKKEKFAEASEEAVSVQRSMQ 714
Cdd:pfam02463 205 QAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQ 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 715 ETVNKLHQKEEQFNMLSSDLEKLRENLAEMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLtkmndelrlKE 794
Cdd:pfam02463 285 EEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREA---------EE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 795 RYVEELQLKLTKANENASFLQKSIEDmtLKAEQSQQEAAEKHEEEKKELERKLSDLEKKMETSHNQCQELKAGYEKATSE 874
Cdd:pfam02463 356 EEEEELEKLQEKLEQLEEELLAKKKL--ESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILE 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 875 TKTKHEEILQNLRKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKSLTYLltsaKKEIELMSEELRGLKSEKQLLSQ 954
Cdd:pfam02463 434 EEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQL----ELLLSRQKLEERSQKESKARSGL 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 955 EGNDLKLENG-SLLSKLVELEAKIALLQGDQQKLWSVNETLNLEKEKFLEEKQDAEKHYEQEHLNKEVLAVEREKLLKEI 1033
Cdd:pfam02463 510 KVLLALIKDGvGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKL 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1034 NVAQEELLKINMENDSLQASKVSMqtliEELQLSKDALIAKTEKDQEERDHLADQIKKLITENFILAKDKDDIIQKLQSS 1113
Cdd:pfam02463 590 PLKSIAVLEIDPILNLAQLDKATL----EADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVK 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1114 YEELVKDQKALVQDIEDLTAEKKSALEKLSNLDNTCIALKVERDNALQNNRDLQLETDMLLHDQEKLNASLQAALQVKQL 1193
Cdd:pfam02463 666 ASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKI 745
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1194 LRSEASGLRAQLDDASKALRKAELETMQLQA-----TNTSLTKLLEEIKARRAVTDSECIQLLHEKETLAASERRLLAEK 1268
Cdd:pfam02463 746 DEEEEEEEKSRLKKEEKEEEKSELSLKEKELaeereKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIE 825
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1269 EELLSENRIITEKLHKCSEEAAHTEMSLNEKITYLTSEKEMASQKMTKLKKHQDSLLKEKSALETQNGVLLAERENSIKA 1348
Cdd:pfam02463 826 QEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEE 905
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1349 IGDLKRQCDQESANRRIIVQENMKLLGNIDALKKELQERKNENQELVASKCDLSLMLKEAQNAKKNLEKEhthilqaKEN 1428
Cdd:pfam02463 906 SQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKV-------NLM 978
|
810 820 830 840
....*....|....*....|....*....|....*....|...
gi 1622847186 1429 LDAELNTCCSEKNILLRDSLNLQEECQKLSEEIQEMQQSLILE 1471
Cdd:pfam02463 979 AIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKE 1021
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
352-942 |
1.52e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.95 E-value: 1.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 352 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDG---HDQHVLELEAKMDQLRTMVEAADREKVELL 428
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEeyeLLAELARLEQDIARLEERRRELEERLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 429 NQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRVQEVAELRRRLEsnkpagdvdmslSLLQEISS 508
Cdd:COG1196 323 EELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE------------ELAEELLE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 509 LQEKLEVTRTDHQREITSLKEHFGAREEtHQKEIKALYTATEKLSKENESLKSKLEHANKENSDVIALwKSKLETAIASH 588
Cdd:COG1196 391 ALRAAAELAAQLEELEEAEEALLERLER-LEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE-EEALLELLAEL 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 589 QQAMEELKVSFSKGLGTETAEFAELKTQIEkmrldyqhEIENLQNQQDSERSAHAKEMEALRAKLMKVIKEKENSLEAIK 668
Cdd:COG1196 469 LEEAALLEAALAELLEELAEAAARLLLLLE--------AEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAAL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 669 SKLDKAEDQHLVEMEETLNKLQEAEIKKEKFAEASEEAVSV--QRSMQETVNKLHQKEEQFNMLSSDLEKLRE------N 740
Cdd:COG1196 541 EAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKirARAALAAALARGAIGAAVDLVASDLREADAryyvlgD 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 741 LAEMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERYVEELQLKLTKANENASFLQKSIED 820
Cdd:COG1196 621 TLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALL 700
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 821 MTLKAEQSQQEAAEKHEEEKKELERKLSDLEKKMETSHNQCQELKAGYEKATSETKTKhEEILQNLRKTLldteDKLKGA 900
Cdd:COG1196 701 AEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPE-PPDLEELEREL----ERLERE 775
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 1622847186 901 REE----NSGLLQELEELRKQadkaksLTYL------LTSAKKEIELMSEEL 942
Cdd:COG1196 776 IEAlgpvNLLAIEEYEELEER------YDFLseqredLEEARETLEEAIEEI 821
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
733-1638 |
1.73e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.08 E-value: 1.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 733 DLEKLRENLAEMEAKFREKDEREEQLIKAKEKLENdiaeimkmsgdnssqltkmNDELRLKERYVE--ELQLKLTKANEN 810
Cdd:TIGR02169 178 ELEEVEENIERLDLIIDEKRQQLERLRREREKAER-------------------YQALLKEKREYEgyELLKEKEALERQ 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 811 ASFLQKSIEDMTLKAEQSQqeaaekheeekkeleRKLSDLEKKMEtshnqcqELKAGYEKATSETKTKHEEILQNLRKTL 890
Cdd:TIGR02169 239 KEAIERQLASLEEELEKLT---------------EEISELEKRLE-------EIEQLLEELNKKIKDLGEEEQLRVKEKI 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 891 LDTEDKLKGAREENSGLLQELEELRKQADKAKsltylltsakkeielmsEELRGLKSEKQLLSQEGNDLKLENGSLLSKL 970
Cdd:TIGR02169 297 GELEAEIASLERSIAEKERELEDAEERLAKLE-----------------AEIDKLLAEIEELEREIEEERKRRDKLTEEY 359
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 971 VELEAKIALLQGDQQklwsvnetlnlEKEKFLEEKQDAEKHYEQEhlnKEVLAVEREKLLKEINVAQEELLKINMENDSL 1050
Cdd:TIGR02169 360 AELKEELEDLRAELE-----------EVDKEFAETRDELKDYREK---LEKLKREINELKRELDRLQEELQRLSEELADL 425
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1051 QASKVSMQTLIEELQLSKDALIAKTEKDQEERDHLADQIKKLitenfilakdkDDIIQKLQSSYEELVKDQKALVQDIED 1130
Cdd:TIGR02169 426 NAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKY-----------EQELYDLKEEYDRVEKELSKLQRELAE 494
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1131 LTAEKKSALEKLSNLDNTCIALKVERDNALQNNRDLQletdmllhdqeKLNASLQAALQVkqllrseASGLRAQ---LDD 1207
Cdd:TIGR02169 495 AEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLG-----------SVGERYATAIEV-------AAGNRLNnvvVED 556
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1208 ASKALRKAE-LETMQL-QATNTSLTKLLEEIKARRAVTDSECIQLLHE----------------KETLAASErrlLAEKE 1269
Cdd:TIGR02169 557 DAVAKEAIElLKRRKAgRATFLPLNKMRDERRDLSILSEDGVIGFAVDlvefdpkyepafkyvfGDTLVVED---IEAAR 633
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1270 ELLSENRIITEKLHKCSEEAAHTEMSLNEKITYLTS-----EKEMASQKMTKLKKHQDSLLKEKSALETQNGVLLAEREN 1344
Cdd:TIGR02169 634 RLMGKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSrsepaELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSD 713
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1345 SIKAIGDLKRQCDQESANRRIIVQENMKLLGNIDALKKELQERKNENQELVASKCDLSLMLKEAQNAKKNLEKEHTH-IL 1423
Cdd:TIGR02169 714 ASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHsRI 793
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1424 QAKENLDAELNTCCSEKNILLRD---SLN-LQEECQKLSEEIQEMQQSLILEQEARAKEKEsslyENNQLHGRMVLLEQE 1499
Cdd:TIGR02169 794 PEIQAELSKLEEEVSRIEARLREieqKLNrLTLEKEYLEKEIQELQEQRIDLKEQIKSIEK----EIENLNGKKEELEEE 869
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1500 VEELRVCTEELQSEKFVLLQEKTKSEQEVAEIIEEKELLTAE-------AAQLAAHIKTLKSDFAALSKSKAELQELHSC 1572
Cdd:TIGR02169 870 LEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQiekkrkrLSELKAKLEALEEELSEIEDPKGEDEEIPEE 949
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622847186 1573 lTKILDDLQLNHEVTLAEKAQVMQDNQNLLAEKSEMMLEKDELLKEKEMLAESYFILQKEISQLAK 1638
Cdd:TIGR02169 950 -ELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEK 1014
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
413-1240 |
2.27e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 59.60 E-value: 2.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 413 LRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESitkgdlevatVSEKSRIMELEKDLALRVQEVAELRRRLESNKP 492
Cdd:pfam02463 176 KKLIEETENLAELIIDLEELKLQELKLKEQAKKALEY----------YQLKEKLELEEEYLLYLDYLKLNEERIDLLQEL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 493 AGDVDMSLSLLQEISSLQEKLEVTRTDHQREITSLKEHFGAREETHQKEIKALYTATEKLSKENESLKSKLEHANKENSd 572
Cdd:pfam02463 246 LRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKK- 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 573 vialwksKLETAIASHQQAMEELKVSFSKGLGTETAEFAELKTQIEKMRLDYQHEIENLQNQQDsersahAKEMEALRAK 652
Cdd:pfam02463 325 -------KAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKL------ESERLSSAAK 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 653 LMKVIKEKENSLEAIKSKLDKAEDQHLVEMEETLNKLQEAEIKKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSS 732
Cdd:pfam02463 392 LKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSE 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 733 DLEKLRENLAEMEAKFREKDEREEQLIKAKEK----------------------------------LENDIAEIMKMSGD 778
Cdd:pfam02463 472 DLLKETQLVKLQEQLELLLSRQKLEERSQKESkarsglkvllalikdgvggriisahgrlgdlgvaVENYKVAISTAVIV 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 779 NSSQLTKMNDELRLKERYVEELQLKLTKANENASFLQK-----------SIEDMTLKAEQSQQEAAEKHEEEKKELERKL 847
Cdd:pfam02463 552 EVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLplksiavleidPILNLAQLDKATLEADEDDKRAKVVEGILKD 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 848 SDLEKKMETSHNQCQELKAGYEKATSETKTKHEEILQNLRKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKSLTYL 927
Cdd:pfam02463 632 TELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEE 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 928 LTSAKKEIELMSEELRGLKSEKQllSQEGNDLKLENGSLLSKLVELEAKIALLQGDQQKLWSVNETLNLEKEKFLEEKQD 1007
Cdd:pfam02463 712 LKKLKLEAEELLADRVQEAQDKI--NEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVE 789
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1008 AEKHYEQEHLNKEVLAVEREKLLKEINVAQEELLKINMENDSLQASKVSMQTLIEELQLSKDALIAKTEKDQEERDHLAD 1087
Cdd:pfam02463 790 EEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELL 869
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1088 QIKKLITENFILAKDKDDIIQKLQSSYEELVKDQKALVQDIEDLTAEKKSALEKLSNLDNTCIALKVERDNALQNNRDLQ 1167
Cdd:pfam02463 870 QELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKE 949
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622847186 1168 LETDmllhDQEKLNASLQAALQVKQLLRSEASGLRAQLDDASKALRKAELETMQLQATNTSLTKLLEEIKARR 1240
Cdd:pfam02463 950 KEEN----NKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQR 1018
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
962-1636 |
4.75e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 58.44 E-value: 4.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 962 ENGSLLSKLVELEAKIALLQGDQQKLWSVNETLNLEKEKFLEEKQDAEKHYEQEHLNKEVLaverEKLLKEINVAQEEL- 1040
Cdd:TIGR00618 164 EKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVL----EKELKHLREALQQTq 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1041 ---------LKINMENDSLQASKVSMQTLIEELQlskdALIAKTEKDQEERDhLADQIKKLITENFILA---KDKDDIIQ 1108
Cdd:TIGR00618 240 qshayltqkREAQEEQLKKQQLLKQLRARIEELR----AQEAVLEETQERIN-RARKAAPLAAHIKAVTqieQQAQRIHT 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1109 KLQSSYEELVK---------DQKALVQDIEDLTAEKKSALEKLSNLDNTCIALKVERDNALQNNRDLQLETDMLLHDQEK 1179
Cdd:TIGR00618 315 ELQSKMRSRAKllmkraahvKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQK 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1180 LNASLQAALQVKQL------LRSEASGLRAQLDDASKA--LRKAELETMQLQATNTSLTKLLEEIKARRAVTD-SECIQL 1250
Cdd:TIGR00618 395 LQSLCKELDILQREqatidtRTSAFRDLQGQLAHAKKQqeLQQRYAELCAAAITCTAQCEKLEKIHLQESAQSlKEREQQ 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1251 LHEKETLAASERRLLAEKEELLSENRIITEKLHK-CSEEAAHTEMSLN------------EKITYLTSEKEMASQKMTKL 1317
Cdd:TIGR00618 475 LQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGsCIHPNPARQDIDNpgpltrrmqrgeQTYAQLETSEEDVYHQLTSE 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1318 KKHQDSLlKEKSALETQNGVLLAERENSIKAIGDLKRQCDQESanrRIIVQENMKLLGNIDALKKELQERKNENQELVAS 1397
Cdd:TIGR00618 555 RKQRASL-KEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRL---QDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDV 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1398 KCDLSLMLKEAQNAKKNLEKEHTHILQAKENLDAELNTCCSEKNILLRDSL--NLQEECQKLSEEIQEMQQSLILEQEAR 1475
Cdd:TIGR00618 631 RLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLAlqKMQSEKEQLTYWKEMLAQCQTLLRELE 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1476 AKEKESSLYEN---NQLHGRMVLLEQEVEELRVCTEELQSEKFVLLQEKTKSEQEVAEIIEEKELLTAEAAQLAAHIKTL 1552
Cdd:TIGR00618 711 THIEEYDREFNeieNASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFF 790
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1553 KSDFAALSKSKAELQELHSclTKILDDLQLnHEVTLAEKAQVMQDNQNLLAEKSEMMLEKDELLKEKEMLAESYFILQKE 1632
Cdd:TIGR00618 791 NRLREEDTHLLKTLEAEIG--QEIPSDEDI-LNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQE 867
|
....
gi 1622847186 1633 ISQL 1636
Cdd:TIGR00618 868 QAKI 871
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1407-1903 |
5.53e-08 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 58.19 E-value: 5.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1407 EAQNAKKNLEKEHtHILQAKENLDAELNTCCSEKNILLRDSLNLQEECQKLSEE----IQEMQQSLILEQEARAKEKESS 1482
Cdd:pfam05483 280 QDENLKELIEKKD-HLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEkeaqMEELNKAKAAHSFVVTEFEATT 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1483 LYENNQLHGRMVLLEQEVEELRVCTEELQsEKFVLLQEKTKSEQEVAEIIEEKELLTAEAAQLAAHIKTLKSDFAALSKS 1562
Cdd:pfam05483 359 CSLEELLRTEQQRLEKNEDQLKIITMELQ-KKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGK 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1563 KAELQELHSCLTKILDDLQLNHEVTLAEKAQVMQDNQNLLAEKSEMMLEKDELLKEKEMLAESYFILQKEISQLaktnsh 1642
Cdd:pfam05483 438 EQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDM------ 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1643 isanLLESQNENRTLRKDKNKLTLKIRELETLQSfTAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLK 1722
Cdd:pfam05483 512 ----TLELKKHQEDIINCKKQEERMLKQIENLEE-KEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKE 586
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1723 ENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRdevtshQKLEEERSVLN 1802
Cdd:pfam05483 587 KQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAK------QKFEEIIDNYQ 660
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1803 NQlLEMKKSLPSNTLRESKFIKDADEEKASLQKSISI-TSALLTEKDAELEKLRNEVTVLRGENASAKSLH-SVVQTLES 1880
Cdd:pfam05483 661 KE-IEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKrCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYkNKEQEQSS 739
|
490 500
....*....|....*....|...
gi 1622847186 1881 DKVKLELKVKNLELQLKENKRQL 1903
Cdd:pfam05483 740 AKAALEIELSNIKAELLSLKKQL 762
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1295-1757 |
7.23e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 57.72 E-value: 7.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1295 SLNEKITYLTSEKEMASQKMTKLKKHQDSLLKEKSALETQngvLLAERENSIKAIGDLKRQCDQESANRRIIVQENMKll 1374
Cdd:TIGR04523 208 KKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTE---ISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKK-- 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1375 gnIDALKKELQERKNENQELVASK-CDLSLMLK-EAQNAKKNLEKEHTHILQAKENLDaELNtccSEKNILLRDSLNLQE 1452
Cdd:TIGR04523 283 --IKELEKQLNQLKSEISDLNNQKeQDWNKELKsELKNQEKKLEEIQNQISQNNKIIS-QLN---EQISQLKKELTNSES 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1453 ECQKLSEEIQEMQQSLILEQearaKEKESSLYENNQLHGRMVLLEQEVEELRVCTEELQSEKFVLLQEKTKSEQEVAEII 1532
Cdd:TIGR04523 357 ENSEKQRELEEKQNEIEKLK----KENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLK 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1533 EEKELLTAEAAQLAAHIKTLKSDFAALSKSKAELQELHSCLTKILDDLQLNHEVTLAEKAQVMQDNQNLLAEKSEMMLEK 1612
Cdd:TIGR04523 433 ETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKV 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1613 DELLKEKEMLAESYFILQKEISQLAKTNSHISANL--LESQNENRTLRKDKNKLTLKIREL-ETLQSFTAAQTAEDamQI 1689
Cdd:TIGR04523 513 KDLTKKISSLKEKIEKLESEKKEKESKISDLEDELnkDDFELKKENLEKEIDEKNKEIEELkQTQKSLKKKQEEKQ--EL 590
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622847186 1690 MEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLK 1757
Cdd:TIGR04523 591 IDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIR 658
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
991-1947 |
1.14e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.46 E-value: 1.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 991 NETLNLEK-EKFLEEKQDAEKHYEQEHLNKEVLAVEREKLLKEINVAQEELLKINMENDSLQASK--VSMQTLIEELQLS 1067
Cdd:PTZ00121 1021 NQNFNIEKiEELTEYGNNDDVLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEdnRADEATEEAFGKA 1100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1068 KDALIAKTEKDQEERDHLADQIKKLITENFILAKDKDDIIQKLQSSYEELVKDQKALVQDIEDLTAEKKSALEKLSNLDN 1147
Cdd:PTZ00121 1101 EEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEA 1180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1148 TCIALKVERDNALQNNRDLQLETDMLLHDQEKL---------NASLQAALQVKQLLRSEASGLRAQLDDASKALRKAELE 1218
Cdd:PTZ00121 1181 ARKAEEVRKAEELRKAEDARKAEAARKAEEERKaeearkaedAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEA 1260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1219 TMQLQATNTSLTKLLEEIKARRAVTDSEciqlLHEKETLAASERRLLAEKEELLSENRIITEKLHKCSEEAAHTEMSLNE 1298
Cdd:PTZ00121 1261 RMAHFARRQAAIKAEEARKADELKKAEE----KKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKK 1336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1299 KITYLTSEKEMASQKMTKLKKHQDSLLKEKSALETQngvllaeRENSIKAIGDLKRQCDQESanrriivqenmkllgNID 1378
Cdd:PTZ00121 1337 KAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKK-------KEEAKKKADAAKKKAEEKK---------------KAD 1394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1379 ALKKELQERKNENQELvaskcdlslmlKEAQNAKKNLEKEHTHILQAKENLDAELNTCCSEKnillrdslnlQEECQKLS 1458
Cdd:PTZ00121 1395 EAKKKAEEDKKKADEL-----------KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKK----------ADEAKKKA 1453
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1459 EEIQEMQQsliLEQEARAKEKESSLYENNQLHGRMVLLEQEVEELRVCTEELQSEKfvllQEKTKSEqevaeiieekELL 1538
Cdd:PTZ00121 1454 EEAKKAEE---AKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAA----EAKKKAD----------EAK 1516
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1539 TAEAAQLAAHIKTLKSDFAALSKSKAELQELHSCLTKIlDDLQLNHEVTLAEKAQVMQDNQNLLAEKSEMMLEKDELLKE 1618
Cdd:PTZ00121 1517 KAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKA-EELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIE 1595
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1619 KEMLAESYFILQKEISQLAKTNSHISANLLESQNENRtlrkdKNKLTLKIRELETLQSFTAAQTAEDAMQI-MEQMTKEK 1697
Cdd:PTZ00121 1596 EVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEK-----KKVEQLKKKEAEEKKKAEELKKAEEENKIkAAEEAKKA 1670
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1698 TETLASLEDTK--QTNAKLQNELDTLKENNLKNVEELNKSKElltVENQKMEEFRKEIETLKQaaaqKSQQLSALQEENV 1775
Cdd:PTZ00121 1671 EEDKKKAEEAKkaEEDEKKAAEALKKEAEEAKKAEELKKKEA---EEKKKAEELKKAEEENKI----KAEEAKKEAEEDK 1743
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1776 KLAEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKSLPSNTLRESKFIKDADEEKASlqKSISITSALLTEKDAELEKLR 1855
Cdd:PTZ00121 1744 KKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKI--KDIFDNFANIIEGGKEGNLVI 1821
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1856 NEVTVLRGENASAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRqlSSSSGNTDTQADEDERAQESqQMIDFLNSVIV 1935
Cdd:PTZ00121 1822 NDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKE--ADFNKEKDLKEDDEEEIEEA-DEIEKIDKDDI 1898
|
970
....*....|..
gi 1622847186 1936 DLQRKNQDLKMK 1947
Cdd:PTZ00121 1899 EREIPNNNMAGK 1910
|
|
| CLIP1_ZNF |
pfam16641 |
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of ... |
2020-2036 |
1.48e-07 |
|
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of the cytoplasmic linker protein CLIP1 (CLIP170). It forms a complex with the CAP-Gly domain of Dynactin.
Pssm-ID: 465212 Cd Length: 17 Bit Score: 49.00 E-value: 1.48e-07
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
969-1846 |
1.86e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 56.52 E-value: 1.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 969 KLVELEAKIALLQGDQQKLWSVNETLNLEKEKFLEEKQDAEKHYEQEHLNKEVLAVEREKLLKEINVAQEELLKINMEND 1048
Cdd:pfam02463 168 KRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLR 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1049 SLQASKVSMQTLIEELQLSKDALIAKTEKDQEERDHLADQIKKLITENFILAKDKDDIIQKLQSSYEELVKDQKALVQDI 1128
Cdd:pfam02463 248 DEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1129 EDLTAEKKSALEKLsnldntcIALKVERDNALQNNRDLQLETDMLLHDQEKLNASLQAALQVKQLLRSEASGLRAQLDDA 1208
Cdd:pfam02463 328 KELKKEKEEIEELE-------KELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELK 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1209 SKALRKAELEtMQLQATNTSLTKLLEEIKARRAVTDSECIQLLHEKETLAASERRLLAEKEELLSENRIITEKLHKCSEE 1288
Cdd:pfam02463 401 SEEEKEAQLL-LELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQL 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1289 AAHTEMSLNEKITYLTSEKEMASQKMTKLKKHQDSLLKEKSALETQNGVLLAERENSIKAIGDLKRQCDQESANRRIIVQ 1368
Cdd:pfam02463 480 VKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADE 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1369 ENMKLLgNIDALKKELQERKNENQELVASKCDLSLMLKEAQNAKKNLEKEHTHILQAKENLDAELNTCCSEKNILLRDSL 1448
Cdd:pfam02463 560 VEERQK-LVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLK 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1449 NLQEECQKLSEEIQEMQQSLILEQEARAKEKES-SLYENNQLHGRMVLLEQEVEELRVCTEELQSEKFVLLQEKTKSEQE 1527
Cdd:pfam02463 639 ESAKAKESGLRKGVSLEEGLAEKSEVKASLSELtKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLE 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1528 VAEIIEEKELLTAEAAQLAAHIKTLKSDFAALSKSKAELQELHSCLTKILDDLQLNHEVTLAEKAQVMQDNQNLLAEKSE 1607
Cdd:pfam02463 719 AEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKA 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1608 MMLEKDELLKEKEMLAESYFILQKEISQL-AKTNSHISANLLESQNENRTLRKDKNKLTLKIRELETLQSFTAAQTAEDA 1686
Cdd:pfam02463 799 QEEELRALEEELKEEAELLEEEQLLIEQEeKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEE 878
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1687 MQIMEQMTKEKTETLASLEDTKQTNAKLQnELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQ 1766
Cdd:pfam02463 879 LEEQKLKDELESKEEKEKEEKKELEEESQ-KLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEE 957
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1767 lsalQEENVKLAEelgrsrdevtshQKLEEERSVLNNQLLEMKKSLPSNTLRESKFIKDADEEKASLQKSISITSALLTE 1846
Cdd:pfam02463 958 ----EEERNKRLL------------LAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKE 1021
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
733-1393 |
2.08e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 56.23 E-value: 2.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 733 DLEKLRENLAEMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERYVEELQLKLTKANENAS 812
Cdd:PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 813 FLQKSiedmtlkaeqsqqeaaekheeekkelERKLSDLEKKMEtshnqcqelkagyekatsetktKHEEILQNLRKTLLD 892
Cdd:PRK03918 239 EIEEL--------------------------EKELESLEGSKR----------------------KLEEKIRELEERIEE 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 893 TEDKLKgAREENSGLLQELEELRKQADKAKSLTYLLTSAKKEIELMSEELRGLKSEKQLLSQEGNDLKLENGSLLSKLVE 972
Cdd:PRK03918 271 LKKEIE-ELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKE 349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 973 LEAKIALLQGDQQKLWSVnetlnLEKEKFLEEKQDAEKHYEQEHLNKEVLAVEREKllKEInvaQEELLKINMENDSLQA 1052
Cdd:PRK03918 350 LEKRLEELEERHELYEEA-----KAKKEELERLKKRLTGLTPEKLEKELEELEKAK--EEI---EEEISKITARIGELKK 419
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1053 SKVSMQTLIEELQLSKDAL-IAKTEKDQEERDHLADQIKKLITEnfiLAKDKDDIIQKLQSSYEELVKDQKALVQDIEDL 1131
Cdd:PRK03918 420 EIKELKKAIEELKKAKGKCpVCGRELTEEHRKELLEEYTAELKR---IEKELKEIEEKERKLRKELRELEKVLKKESELI 496
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1132 TaeKKSALEKLSNLDNTCIALKVERdnaLQNNRDLQLETDMLLHDQEKLNASLQAALQVKQLLRSEASGLRAQLDDASKa 1211
Cdd:PRK03918 497 K--LKELAEQLKELEEKLKKYNLEE---LEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEE- 570
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1212 lRKAELETMQLQATNTSLTKLLEEIKarravtdsECIQLLHEKETLAASERRLLAEKEELLSENRIITEKLHKCSEEAAH 1291
Cdd:PRK03918 571 -ELAELLKELEELGFESVEELEERLK--------ELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKR 641
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1292 TEMSLNE----KITYLTSEKEMASQKMTKLKKHQDSLLKEKSALETQngvllaeRENSIKAIGDLKRQCDQ-ESANRRII 1366
Cdd:PRK03918 642 LEELRKEleelEKKYSEEEYEELREEYLELSRELAGLRAELEELEKR-------REEIKKTLEKLKEELEErEKAKKELE 714
|
650 660
....*....|....*....|....*..
gi 1622847186 1367 VQEnmKLLGNIDALKKELQERKNENQE 1393
Cdd:PRK03918 715 KLE--KALERVEELREKVKKYKALLKE 739
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
336-801 |
2.11e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.48 E-value: 2.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 336 LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELAlardghdqhvlELEAKMDQLRT 415
Cdd:COG1196 283 LEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELE-----------ELEEELEEAEE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 416 MVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRVQEVAELRRRLESNkpAGD 495
Cdd:COG1196 352 ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEEL--EEA 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 496 VDMSLSLLQEISSLQEKLEVTRTDHQREITSLKEHFGAREETHQKEIKALYTATEKLSKENESLKSKLEHANKENSDVIA 575
Cdd:COG1196 430 LAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 576 LWKSKLETAIASHQQAM-EELKVSFSKGLGTETAEFAELKTQIEKMRLDYQHEIENLQNQQ---------DSERSAHAKE 645
Cdd:COG1196 510 VKAALLLAGLRGLAGAVaVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKagratflplDKIRARAALA 589
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 646 MEALRAKLMKVIKEKENSLEAIKSKLDKAEDQHLVEMEETLNKLQEAEIKKEKFAEASEEAVSVQRSMQETVNKLHQKEE 725
Cdd:COG1196 590 AALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRE 669
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622847186 726 QfnmLSSDLEKLRENLAEMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERYVEELQ 801
Cdd:COG1196 670 L---LAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELL 742
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
626-1330 |
2.32e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 56.39 E-value: 2.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 626 HEIENLQNQQDSERSAHA---------KEMEALRAKLMKVIKEKENSLEAIKSKLDKAEDQHLVEMEETLNKLQEAEIKK 696
Cdd:pfam12128 241 PEFTKLQQEFNTLESAELrlshlhfgyKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKD 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 697 EKFAEASEEavSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLAEMEAKFR---EKDEREEQLIKA---------KEK 764
Cdd:pfam12128 321 RSELEALED--QHGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGKHQdvtAKYNRRRSKIKEqnnrdiagiKDK 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 765 LENDIAEIMKMSGDNSSQLTKMNDELRlkeryvEELQLKLTKANENASFLQKSIEDMTLKAEQSQqeaaekheeekkele 844
Cdd:pfam12128 399 LAKIREARDRQLAVAEDDLQALESELR------EQLEAGKLEFNEEEYRLKSRLGELKLRLNQAT--------------- 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 845 rKLSDLEKKMETSHNQCQELKAGYEKATSETKTKHEEILQnLRKTLLDTEDKLKGAREENSGLLQELEELRKQAD-KAKS 923
Cdd:pfam12128 458 -ATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQ-ARKRRDQASEALRQASRRLEERQSALDELELQLFpQAGT 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 924 LTYLLtsaKKEIELMSEELRGLKSEKQLLSQEgNDLKLENGSLLSKLVELEAKIALLQGDQQKLWSVNETLNLEKEKFLE 1003
Cdd:pfam12128 536 LLHFL---RKEAPDWEQSIGKVISPELLHRTD-LDPEVWDGSVGGELNLYGVKLDLKRIDVPEWAASEEELRERLDKAEE 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1004 EKQDAEKHYEQEHLNKEVLAVEREKLLKEinvaqEELLKINMENDSLQASKVSMQTLIEELQLSKdALIAKTEKDQEERD 1083
Cdd:pfam12128 612 ALQSAREKQAAAEEQLVQANGELEKASRE-----ETFARTALKNARLDLRRLFDEKQSEKDKKNK-ALAERKDSANERLN 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1084 HLADQIKKLITENFILAKDKDDiiQKLQSSYEELVKdQKALVQDIEDLTAEKKSALEKL-SNLDNTCIALKVERDNAL-- 1160
Cdd:pfam12128 686 SLEAQLKQLDKKHQAWLEEQKE--QKREARTEKQAY-WQVVEGALDAQLALLKAAIAARrSGAKAELKALETWYKRDLas 762
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1161 -----QNNRDLQLETDMLLHDQEKLNASLQAALQVKQLLRSEASGLRAQLddaskALRKAELETMQLQaTNTSLTKLLEE 1235
Cdd:pfam12128 763 lgvdpDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWLQRRPRL-----ATQLSNIERAISE-LQQQLARLIAD 836
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1236 IKARRAvtdseciQLLHEKETLAASERRLLAEKEELLSENRIITE-KLHKCSEEAAHTEMSLNEKITYLTSEKEMASQKM 1314
Cdd:pfam12128 837 TKLRRA-------KLEMERKASEKQQVRLSENLRGLRCEMSKLATlKEDANSEQAQGSIGERLAQLEDLKLKRDYLSESV 909
|
730
....*....|....*.
gi 1622847186 1315 TKLKKHQDSLLKEKSA 1330
Cdd:pfam12128 910 KKYVEHFKNVIADHSG 925
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
391-827 |
2.42e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 56.28 E-value: 2.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 391 ELALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEEKR----------KVEDLQFRVEEESITKGDLEVATV 460
Cdd:pfam15921 357 ELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRlwdrdtgnsiTIDHLRRELDDRNMEVQRLEALLK 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 461 SEKSRIM-ELEKDLAL------RVQEVAELRRRLESNKpagdvDMSLSLLQEISSLQEKLEVTRTDHQREITSLKEHFGA 533
Cdd:pfam15921 437 AMKSECQgQMERQMAAiqgkneSLEKVSSLTAQLESTK-----EMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERA 511
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 534 REETHQkEIKALYTATEKLSKENESLKSKLEHANKENSDVIAL-----WKSKLETAIASHQQAMEELKVSFSKGLGTETA 608
Cdd:pfam15921 512 IEATNA-EITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALklqmaEKDKVIEILRQQIENMTQLVGQHGRTAGAMQV 590
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 609 EFAELKTQIEKMRLDYQhEIENLQNQQDS---ERSAHAKEMEALRAKLMKVIKEKENSLEAIKSKLDKAEDQHLVEMEET 685
Cdd:pfam15921 591 EKAQLEKEINDRRLELQ-EFKILKDKKDAkirELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNEL 669
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 686 LNKLQEAEIKKEKFAEASEEavsvqrsMQETVNKLHQkeeQFNMLSSDLEKLRENLAEME------------------AK 747
Cdd:pfam15921 670 NSLSEDYEVLKRNFRNKSEE-------METTTNKLKM---QLKSAQSELEQTRNTLKSMEgsdghamkvamgmqkqitAK 739
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 748 FREKDEREEQLIKAKEKLEND-------IAEIMKMSGDNSSQLTKMN------DELRLKERYVEELQLKLTKANENASFL 814
Cdd:pfam15921 740 RGQIDALQSKIQFLEEAMTNAnkekhflKEEKNKLSQELSTVATEKNkmagelEVLRSQERRLKEKVANMEVALDKASLQ 819
|
490
....*....|...
gi 1622847186 815 QKSIEDMTLKAEQ 827
Cdd:pfam15921 820 FAECQDIIQRQEQ 832
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1164-1919 |
2.44e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 56.28 E-value: 2.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1164 RDLQ--LETDMLLHDQEKLN-----ASLQAALQVKQLLRSEASGLRAQLDDASKALRKaeletmQLQATntsltklLEEI 1236
Cdd:pfam15921 88 KDLQrrLNESNELHEKQKFYlrqsvIDLQTKLQEMQMERDAMADIRRRESQSQEDLRN------QLQNT-------VHEL 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1237 KARRAVTDSeciqLLHEKETLAASERRLLAEKEELLSENRIITEKLHKCSEEAAHTEMSLNekITYLTSEKEMASQKMTK 1316
Cdd:pfam15921 155 EAAKCLKED----MLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMS--TMHFRSLGSAISKILRE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1317 LKKHQDSLLKEKSALETQNGVLLAERENSIKAIgdLKRQCDQEsanRRIIVQENMKLLG-------------NIDALKKE 1383
Cdd:pfam15921 229 LDTEISYLKGRIFPVEDQLEALKSESQNKIELL--LQQHQDRI---EQLISEHEVEITGltekassarsqanSIQSQLEI 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1384 LQER-KNENQELVASKCDL----SLMLKEAQNAKKNLEKEHTHILQAKENLDAELNTCCSEKNILLRDSLNLQEECQKLS 1458
Cdd:pfam15921 304 IQEQaRNQNSMYMRQLSDLestvSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLL 383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1459 EEIQEMQQSLILEQEARAKEKESSLYEN---NQLHGRMVLLEQEVEELRVCTEELQSE-------KFVLLQEKTKSEQEV 1528
Cdd:pfam15921 384 ADLHKREKELSLEKEQNKRLWDRDTGNSitiDHLRRELDDRNMEVQRLEALLKAMKSEcqgqmerQMAAIQGKNESLEKV 463
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1529 ----AEIIEEKELLTAEAAQLAAHIKTLKSDFAALSKSKAELQE-------LHSCLTKILD--DLQLNHEVTLAEKAQVM 1595
Cdd:pfam15921 464 ssltAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEkeraieaTNAEITKLRSrvDLKLQELQHLKNEGDHL 543
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1596 QDNQNLLAEKSEMMLEKDELLKekemlaesyfILQKEISQLAKTNSHISANLLESQNENRTLRKDKNKLTLKIRELETLQ 1675
Cdd:pfam15921 544 RNVQTECEALKLQMAEKDKVIE----------ILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILK 613
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1676 SFTAAQTAEDAMQIME------QMTKEKTETLASLEDTKQTNAKLQNELDTLKeNNLKNVEE---------LNKSKELLT 1740
Cdd:pfam15921 614 DKKDAKIRELEARVSDlelekvKLVNAGSERLRAVKDIKQERDQLLNEVKTSR-NELNSLSEdyevlkrnfRNKSEEMET 692
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1741 VENQKMEEFRKEIETLKQAAaQKSQQLSALQEENVKLAeeLGRSRDEVTSHQKLEEERSVLnnQLLEMKKSlpsNTLRES 1820
Cdd:pfam15921 693 TTNKLKMQLKSAQSELEQTR-NTLKSMEGSDGHAMKVA--MGMQKQITAKRGQIDALQSKI--QFLEEAMT---NANKEK 764
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1821 KFIKdadEEKASLQKSISITSallTEKDaeleKLRNEVTVLRgenasakslhsvvqtleSDKVKLELKVKNLELQLKENK 1900
Cdd:pfam15921 765 HFLK---EEKNKLSQELSTVA---TEKN----KMAGELEVLR-----------------SQERRLKEKVANMEVALDKAS 817
|
810
....*....|....*....
gi 1622847186 1901 RQLSSSSGNTDTQADEDER 1919
Cdd:pfam15921 818 LQFAECQDIIQRQEQESVR 836
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1563-1872 |
2.96e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.71 E-value: 2.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1563 KAELQELHSCLTKILDDlqlNHEVTLAEKAQVMQDNQNLLAEKSEmmlEKDELLKEKEMLAESYFILQKEISQLAKTNSH 1642
Cdd:COG1196 219 KEELKELEAELLLLKLR---ELEAELEELEAELEELEAELEELEA---ELAELEAELEELRLELEELELELEEAQAEEYE 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1643 ISANLLESQNENRTLRKDKNKLTLKIRELETLQSFTAAQTAEDAMQImEQMTKEKTETLASLEDTKQTNAKLQNELDTLK 1722
Cdd:COG1196 293 LLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL-EELEEELEEAEEELEEAEAELAEAEEALLEAE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1723 ENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVTSHQKLEEERSVLN 1802
Cdd:COG1196 372 AELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE 451
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1803 NQLLEmkkslpsNTLRESKFIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKSLH 1872
Cdd:COG1196 452 AELEE-------EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAAL 514
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1602-1950 |
3.40e-07 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 55.85 E-value: 3.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1602 LAEKSEMMLEKDELLKEKEMLAESYFILQkeiSQLAKTNSHISANLLESQNENRTLRKDKNKLTLKIRELETLQSFTAAq 1681
Cdd:COG5022 805 LLGSRKEYRSYLACIIKLQKTIKREKKLR---ETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELA- 880
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1682 taedamqimEQMTKEKTETLASLEDTKQTNAKLQNEL---------DTLKENNLKNvEELNKSKELLT---VENQKMEEF 1749
Cdd:COG5022 881 ---------ERQLQELKIDVKSISSLKLVNLELESEIielkkslssDLIENLEFKT-ELIARLKKLLNnidLEEGPSIEY 950
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1750 RK-----EIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKSLPSNTLR------ 1818
Cdd:COG5022 951 VKlpelnKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEvaelqs 1030
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1819 ESKFIKDADEEKASLQKSISITSALLtekdAELEKLRNEVTVLRGENASAKSLHSVVQTLESDKVKL-ELKVKNLELqlk 1897
Cdd:COG5022 1031 ASKIISSESTELSILKPLQKLKGLLL----LENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLkTINVKDLEV--- 1103
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1622847186 1898 eNKRQLSSSSGNTDTQADEDERAQESQQMIDFLNSVIVDLQRKNQDLKMKVEM 1950
Cdd:COG5022 1104 -TNRNLVKPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLE 1155
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1295-1900 |
8.06e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 54.26 E-value: 8.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1295 SLNEKITYLTSEKEMASQKMTKLKKHQDSLLKEKSALETQNGVLLAERENSIKAIGDLKRQCDQESANRRIIVQENMKLL 1374
Cdd:TIGR04523 72 NSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKE 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1375 GNIDALKKELQERKNENQELvasKCDLSLMLKEAQNAKKNLEKEHTHIL-------------QAKENLDAELNTCCSEKN 1441
Cdd:TIGR04523 152 KELEKLNNKYNDLKKQKEEL---ENELNLLEKEKLNIQKNIDKIKNKLLklelllsnlkkkiQKNKSLESQISELKKQNN 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1442 ILLRDSLNLQEECQKLSEEIQEMQQSL---ILEQEARAKEKESSLYENNQLHGRMVLLEQEVEELRVCTEELQSEKFVLL 1518
Cdd:TIGR04523 229 QLKDNIEKKQQEINEKTTEISNTQTQLnqlKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDW 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1519 QEKTKSEqeVAEIIEEKELLTAEAAQLAAHIKTLKSDFAALSKSKAELQELHSCLTKILDDLQLNHEVTLAEKAQVMQDN 1598
Cdd:TIGR04523 309 NKELKSE--LKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEI 386
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1599 QNLLAEKSEMMLEKDELLKEKEMLAESYFILQKEISQLAKTNSHISANLLESQNENRTLRKDKNKLTLKIRELEtlqsft 1678
Cdd:TIGR04523 387 KNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLD------ 460
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1679 aaQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNlKNVEElnKSKELltveNQKMEEFRKEIETLKQ 1758
Cdd:TIGR04523 461 --NTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEK-KELEE--KVKDL----TKKISSLKEKIEKLES 531
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1759 AAAQKSQQLSALQEENVKLAEELGRSrdevtshqKLEEERSVLNNQLLEMK---KSLPSNTLRESKFIKDADEEKASLQK 1835
Cdd:TIGR04523 532 EKKEKESKISDLEDELNKDDFELKKE--------NLEKEIDEKNKEIEELKqtqKSLKKKQEEKQELIDQKEKEKKDLIK 603
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622847186 1836 SISITSALLTEKDAELEKLRNEvtvlrgenasAKSLHSVVQTLESDKVKLELKVKNLELQLKENK 1900
Cdd:TIGR04523 604 EIEEKEKKISSLEKELEKAKKE----------NEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIR 658
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
336-830 |
8.25e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 54.28 E-value: 8.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 336 LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHD----------QHVLE 405
Cdd:PRK02224 239 ADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGlddadaeaveARREE 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 406 LEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRVQEVAELRR 485
Cdd:PRK02224 319 LEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 486 RLE--SNKPAGDVDMSLSLLQEISSLQEKLEVTRTDHQREITSLKEHFGAREE-------------THQKEIKALYTATE 550
Cdd:PRK02224 399 RFGdaPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAgkcpecgqpvegsPHVETIEEDRERVE 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 551 KLSKENESLKSKLEHANKENSDVIALWK--SKLETaIASHQQAMEELKVSFSKGLGTETAEFAELKTQIEKMRLDYQhEI 628
Cdd:PRK02224 479 ELEAELEDLEEEVEEVEERLERAEDLVEaeDRIER-LEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAE-EK 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 629 ENLQNQQDSERSAHAKEMEALRAKLMKvIKEKENSLEAIKSKLDKAED--QHLVEMEETLNKLQEAE-IKKEKFAEASEE 705
Cdd:PRK02224 557 REAAAEAEEEAEEAREEVAELNSKLAE-LKERIESLERIRTLLAAIADaeDEIERLREKREALAELNdERRERLAEKRER 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 706 avsvQRSMQETVNklhqkEEQFNMLSSDLEKLRENLAEMEAKFREKDEREEQLIKAKEKLENDIAEImkmsgdnssqltk 785
Cdd:PRK02224 636 ----KRELEAEFD-----EARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEEL------------- 693
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 1622847186 786 mnDELRLKERYVEELQLKLTKANENASFLQKSIedMTLKAEQSQQ 830
Cdd:PRK02224 694 --EELRERREALENRVEALEALYDEAEELESMY--GDLRAELRQR 734
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
344-1036 |
9.51e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.38 E-value: 9.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 344 ARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQElalaRDGHDQHVLELEAKMDQLRTMVEAAdRE 423
Cdd:PTZ00121 1242 AKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEK----KKADEAKKAEEKKKADEAKKKAEEA-KK 1316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 424 KVELLNQLEEEKRKVEDLQFRVEEEsitKGDLEVATVSEKSRIMELEKdlALRVQEVAELRRRlESNKPAGDVDMSLSLL 503
Cdd:PTZ00121 1317 ADEAKKKAEEAKKKADAAKKKAEEA---KKAAEAAKAEAEAAADEAEA--AEEKAEAAEKKKE-EAKKKADAAKKKAEEK 1390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 504 QEISSLQEKLEvtrtdhqrEITSLKEHFGAREETHQKEIKALYTATEKlsKENESLKSKLEHANK-ENSDVIALWKSKLE 582
Cdd:PTZ00121 1391 KKADEAKKKAE--------EDKKKADELKKAAAAKKKADEAKKKAEEK--KKADEAKKKAEEAKKaDEAKKKAEEAKKAE 1460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 583 TAI--ASHQQAMEELKvsfSKGLGTETAEFAELKTQIEKMRLDYQHEIENLQNQQDSERSAHakemEALRAKLMKVIKEK 660
Cdd:PTZ00121 1461 EAKkkAEEAKKADEAK---KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAE----EAKKADEAKKAEEA 1533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 661 ENSLEAIKSK-------LDKAEDQHLVEMEETLNKLQEAEIKKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSD 733
Cdd:PTZ00121 1534 KKADEAKKAEekkkadeLKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAK 1613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 734 LEKLRENLAEMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERYVEELQLKLTKANENASF 813
Cdd:PTZ00121 1614 KAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEA 1693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 814 LQKSIEDMTLKAEQSQQEAAEKHEEEkkelerklsDLEKKMETSHNQCQELK--AGYEKATSETKTKHEEILQNLRKTLL 891
Cdd:PTZ00121 1694 LKKEAEEAKKAEELKKKEAEEKKKAE---------ELKKAEEENKIKAEEAKkeAEEDKKKAEEAKKDEEEKKKIAHLKK 1764
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 892 DTEDKLKGAREENSGLLQE---LEELRKQADKAKSLTYLLTSAKKEIELMSEELRGLKSEKQLLSQEGNDLKLENGSLLS 968
Cdd:PTZ00121 1765 EEEKKAEEIRKEKEAVIEEeldEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLE 1844
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622847186 969 KLVELEAKIALLQGDQQKlwSVNETLNLEKEKFLeeKQDAEKHYEQEHLNKEVLAVEREKLLKEINVA 1036
Cdd:PTZ00121 1845 EADAFEKHKFNKNNENGE--DGNKEADFNKEKDL--KEDDEEEIEEADEIEKIDKDDIEREIPNNNMA 1908
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
532-1092 |
9.61e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 54.28 E-value: 9.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 532 GAREETHQKEIKALYTATEKLSKENESLKSKLEHANkENSDVIALWKSKLETAIASHQQAMEELKVsfskgLGTETAEFA 611
Cdd:PRK02224 191 QLKAQIEEKEEKDLHERLNGLESELAELDEEIERYE-EQREQARETRDEADEVLEEHEERREELET-----LEAEIEDLR 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 612 ELKTQIEKMRLDYQHEIENLQNQQDS--ERSAHAKEMEALRAKLMKVIKEKENSLEAIKSKLDKAEDQHLVEMEETLNK- 688
Cdd:PRK02224 265 ETIAETEREREELAEEVRDLRERLEEleEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEa 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 689 ---LQEAEIKKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLAEMEAKFREKDEREEQLIKAKEKL 765
Cdd:PRK02224 345 eslREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDEL 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 766 ENDIAEImkmsgdnSSQLTKMNDELRLKERYVEELQLKLTKANENASFLQKSIEDMTLKAEQsqqeaaekHEEEKKELER 845
Cdd:PRK02224 425 REREAEL-------EATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEE--------LEAELEDLEE 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 846 KLSDLEKKMETShNQCQELKAGYEKaTSETKTKHEEILQNLRKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKSlt 925
Cdd:PRK02224 490 EVEEVEERLERA-EDLVEAEDRIER-LEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEE-- 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 926 ylltsakkEIELMSEELRGLKSEKQLLSQEGNDLklenGSLLSKLVELEAKIALLQGDQQKLWSVNETLNLEKEKfLEEK 1005
Cdd:PRK02224 566 --------EAEEAREEVAELNSKLAELKERIESL----ERIRTLLAAIADAEDEIERLREKREALAELNDERRER-LAEK 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1006 QDAEKHYEQEH--LNKEVLAVEREKLLKEINVAQEELLKINMENDSLQASKVSMQTLIEELqlskdaliaktEKDQEERD 1083
Cdd:PRK02224 633 RERKRELEAEFdeARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEEL-----------EELRERRE 701
|
....*....
gi 1622847186 1084 HLADQIKKL 1092
Cdd:PRK02224 702 ALENRVEAL 710
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
848-1465 |
1.04e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.87 E-value: 1.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 848 SDLEKKMETSHNQCQELKAGYEKATSETKTKHEEILQNLRKTlldteDKLKGAREENSGLLQE-LEELRKQADKAKSLTY 926
Cdd:TIGR04523 85 KDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVEL-----NKLEKQKKENKKNIDKfLTEIKKKEKELEKLNN 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 927 LLTSAKKEIELMSEELRGLKSEKQLLSQEGNDLKLENGSL---LSKLVELEAKIALLQGDQQKLWSVNETLNLEKEKFLE 1003
Cdd:TIGR04523 160 KYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLellLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQ 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1004 EKQDAEKHYEQEHLNKEVLAVEREKLLKEINVAQEELLKINMENDSLQASKVSMQTLIEELQLSKDALIAKTEKDQ-EER 1082
Cdd:TIGR04523 240 EINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSElKNQ 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1083 DHLADQIKKLITENFILAKDKDDIIQKLQSSYEELVKDQKALVQDIEdltaEKKSALEKlsnldntciaLKVERDNALQN 1162
Cdd:TIGR04523 320 EKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELE----EKQNEIEK----------LKKENQSYKQE 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1163 NRDLQLETDML---LHDQEKLNASLQAALQVKQllrSEASGLRAQLDDASKALRKAELETMQLQATNTSLTKLLEEIKAR 1239
Cdd:TIGR04523 386 IKNLESQINDLeskIQNQEKLNQQKDEQIKKLQ---QEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNT 462
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1240 RAvtdseciqllHEKETLAASERRLLAEKEELLSENRIITEKlhkcseeaahtemslNEKITYLTSEKEMASQKMTKLKK 1319
Cdd:TIGR04523 463 RE----------SLETQLKVLSRSINKIKQNLEQKQKELKSK---------------EKELKKLNEEKKELEEKVKDLTK 517
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1320 HQDSLLKEKSALETQngvlLAERENSIKAIGDLKRQCDQEsanrriivQENMKLLGNIDALKKELQERKNENQELVASKC 1399
Cdd:TIGR04523 518 KISSLKEKIEKLESE----KKEKESKISDLEDELNKDDFE--------LKKENLEKEIDEKNKEIEELKQTQKSLKKKQE 585
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622847186 1400 DLSLMLKEAQNAKKNLEKEHTHILQAKENLDAELNTCCSEKNILLRDSLNLQEECQKLSEEIQEMQ 1465
Cdd:TIGR04523 586 EKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIK 651
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1065-1412 |
1.16e-06 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 53.36 E-value: 1.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1065 QLSKDALIAKTEKDQEERDH--LADQIKKLITEnfilAKDKDDIIQKLQSSYEELVKDQKALVQDIEDLTAEKKSALEKL 1142
Cdd:pfam07888 56 QREKEKERYKRDREQWERQRreLESRVAELKEE----LRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAHEARI 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1143 SNLDNTCIAL---KVERDNALQNNRDLQLETDMLLHDQEKLNASLQAALQVKQllrSEASGLRAQLDDASKALRKAELET 1219
Cdd:pfam07888 132 RELEEDIKTLtqrVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTE---EELRSLSKEFQELRNSLAQRDTQV 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1220 MQLQATNTSLTKLLEEIKARRAVTDSECIQLLHEKETLAASERRLLAEKEELLS----ENRIITEkLHKCSEEAAHTEMS 1295
Cdd:pfam07888 209 LQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSmaaqRDRTQAE-LHQARLQAAQLTLQ 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1296 LNEKITYLTSEKEMASQKMTKL----KKHQDSLLKEKSALETQNGVLLAERENSIKAIGDLKRQCDQESANRRIIVQENM 1371
Cdd:pfam07888 288 LADASLALREGRARWAQERETLqqsaEADKDRIEKLSAELQRLEERLQEERMEREKLEVELGREKDCNRVQLSESRRELQ 367
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1622847186 1372 KLLGNIDALKKELQERKNENQELVASKCDLSLMLKEAQNAK 1412
Cdd:pfam07888 368 ELKASLRVAQKEKEQLQAEKQELLEYIRQLEQRLETVADAK 408
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
352-948 |
1.89e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.12 E-value: 1.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 352 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELalardghdQHVLELEAKMDQLRTMVEAADREKVELLNQL 431
Cdd:PRK02224 210 GLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERR--------EELETLEAEIEDLRETIAETEREREELAEEV 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 432 EEEKRKVEDLQFRVEE--ESITKGDLEVATVSEksRIMELEKDLAlrvqevaELRRRLESNKPAgdvdmslslLQEISSL 509
Cdd:PRK02224 282 RDLRERLEELEEERDDllAEAGLDDADAEAVEA--RREELEDRDE-------ELRDRLEECRVA---------AQAHNEE 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 510 QEKLEVTRTDHQREITSLKEhfgaREETHQKEIKALYTATEKLSKENESLKSKLEHANKENSDVIAlwksKLETAiASHQ 589
Cdd:PRK02224 344 AESLREDADDLEERAEELRE----EAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPV----DLGNA-EDFL 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 590 QAMEELKVSFSKGLGTETAEFAELKTQIEKMR--LDYQHEIENLQNQQDSERSAHAKEMEALRAKLMKVIKEKENSLEAI 667
Cdd:PRK02224 415 EELREERDELREREAELEATLRTARERVEEAEalLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEV 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 668 KSKLDKAEDqhLVEMEETLNKLQEAeikkekfAEASEEAVSVQRsmqetvNKLHQKEEQfnmlssdLEKLRENLAEMEAK 747
Cdd:PRK02224 495 EERLERAED--LVEAEDRIERLEER-------REDLEELIAERR------ETIEEKRER-------AEELRERAAELEAE 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 748 FREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDelrlkeryVEELQLKLTKANENASFLQKSIEDmtlKAEQ 827
Cdd:PRK02224 553 AEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER--------IRTLLAAIADAEDEIERLREKREA---LAEL 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 828 SQQEAAEKHEEEKKELERKLSDLEKKMETSHNQCQELKAGYEKATSETKTKHEEilqnlRKTLLdteDKLKGAREEnsgl 907
Cdd:PRK02224 622 NDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREE-----RDDLQ---AEIGAVENE---- 689
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 1622847186 908 LQELEELRKQADKAKSLTYLLTSAKKEIELMSEELRGLKSE 948
Cdd:PRK02224 690 LEELEELRERREALENRVEALEALYDEAEELESMYGDLRAE 730
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1444-1898 |
2.56e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 52.73 E-value: 2.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1444 LRDSLN-LQEECQKLSEEIQEMQqslilEQEARAKEK----ESSLYENNQLHGRMVLLEQEVEELRVCTEELQSEKFVLL 1518
Cdd:PRK02224 204 LHERLNgLESELAELDEEIERYE-----EQREQARETrdeaDEVLEEHEERREELETLEAEIEDLRETIAETEREREELA 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1519 QEKTKSEQEVAEIIEEKELLTAEAAQLAAHIKTLKSDFAALSKSKAELQElhSCLTKILDDLQLNHEV-TLAEKAQVMQD 1597
Cdd:PRK02224 279 EEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRD--RLEECRVAAQAHNEEAeSLREDADDLEE 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1598 NQNLLAEK-----SEMMLEKDELLKEKEMLAEsyfiLQKEISQLAKTNSHISANLLESQNENRTLRKDKNKLTLKIRELE 1672
Cdd:PRK02224 357 RAEELREEaaeleSELEEAREAVEDRREEIEE----LEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1673 -TLQsfTAAQTAEDAMQIMEQ-------MTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQ 1744
Cdd:PRK02224 433 aTLR--TARERVEEAEALLEAgkcpecgQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDR 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1745 --KMEEFRKEIETL----KQAAAQKSQQLSALQEENVKLAEELGRSRDEVTS-HQKLEEERSV---LNNQLLEMKKSLPS 1814
Cdd:PRK02224 511 ieRLEERREDLEELiaerRETIEEKRERAEELRERAAELEAEAEEKREAAAEaEEEAEEAREEvaeLNSKLAELKERIES 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1815 -NTLRES-KFIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKslhsvVQTLESDKVKLELKVKNL 1892
Cdd:PRK02224 591 lERIRTLlAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEAR-----IEEAREDKERAEEYLEQV 665
|
....*.
gi 1622847186 1893 ELQLKE 1898
Cdd:PRK02224 666 EEKLDE 671
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
353-1435 |
3.02e-06 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 52.75 E-value: 3.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 353 LQEALKEKQQHIEQLLAERDLERAEVAKATSHV-GEIEQELALARDGhdqhvlELEAKMDQLRTMVEAADREKVEllnql 431
Cdd:TIGR01612 625 LKKIIENNNAYIDELAKISPYQVPEHLKNKDKIySTIKSELSKIYED------DIDALYNELSSIVKENAIDNTE----- 693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 432 eeEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRVqeVAELRRRLEsnkpaGDVDMSLS-LLQEISSLQ 510
Cdd:TIGR01612 694 --DKAKLDDLKSKIDKEYDKIQNMETATVELHLSNIENKKNELLDI--IVEIKKHIH-----GEINKDLNkILEDFKNKE 764
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 511 EKLEVTRTDHQRE----------ITSLKEHFGAR---EETHQKEIKALYTATEKLS-----KENESLKS----------- 561
Cdd:TIGR01612 765 KELSNKINDYAKEkdelnkykskISEIKNHYNDQiniDNIKDEDAKQNYDKSKEYIktisiKEDEIFKIinemkfmkddf 844
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 562 --------KLEHANKENSDV----IALWKSKLETAIASHQQAMEELKVSFSKGLGTETAEFAELKTQIEKMRLDYQHEIE 629
Cdd:TIGR01612 845 lnkvdkfiNFENNCKEKIDSeheqFAELTNKIKAEISDDKLNDYEKKFNDSKSLINEINKSIEEEYQNINTLKKVDEYIK 924
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 630 NLQNQQDSERSAHAKE--MEALRAKLMKVIKEK-----------ENSLEAIKSKLDKA-EDQHLVEMEETLNKL-QEAEI 694
Cdd:TIGR01612 925 ICENTKESIEKFHNKQniLKEILNKNIDTIKESnlieksykdkfDNTLIDKINELDKAfKDASLNDYEAKNNELiKYFND 1004
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 695 KKEKFAEASEEAVSVQRSMQE-TVNKLHQKEEQFNMLSSDLEklrenLAEMEAKFREKDEREEQLIKAKEKLENdiaEIM 773
Cdd:TIGR01612 1005 LKANLGKNKENMLYHQFDEKEkATNDIEQKIEDANKNIPNIE-----IAIHTSIYNIIDEIEKEIGKNIELLNK---EIL 1076
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 774 KMSGDNSSQLTKMNDELRLK--ERYVEELQLKLTKANENASFLQKSIEDMTLKAEQSQQEAAEKHEEEKKELERKLSDLE 851
Cdd:TIGR01612 1077 EEAEINITNFNEIKEKLKHYnfDDFGKEENIKYADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQINDLE 1156
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 852 KKMETshnqcqelkAGYEKATSETKTKHEEILQNLrktlldteDKLKGAREENSGLLQELEELRK-----QADKAKSLTY 926
Cdd:TIGR01612 1157 DVADK---------AISNDDPEEIEKKIENIVTKI--------DKKKNIYDEIKKLLNEIAEIEKdktslEEVKGINLSY 1219
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 927 LLTSAKKEIELMSEELRglKSEKQLLSQEGNDLKLENGSLLSKLVELEAKIALlqgdqqklwsvneTLNLEKEKFLEEKQ 1006
Cdd:TIGR01612 1220 GKNLGKLFLEKIDEEKK--KSEHMIKAMEAYIEDLDEIKEKSPEIENEMGIEM-------------DIKAEMETFNISHD 1284
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1007 DAEKHYEQEHLNKEVLAVEREKLLK---------EINVAQEELLKINME----NDSLQASKVSMQTLIEELQLSK----- 1068
Cdd:TIGR01612 1285 DDKDHHIISKKHDENISDIREKSLKiiedfseesDINDIKKELQKNLLDaqkhNSDINLYLNEIANIYNILKLNKikkii 1364
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1069 DALIAKTEKDQEERDHLADQIKKLITenfILAKDKDDIIQKLQSSYEELVKDQKALVQDIEDLTAEKKSALEKLSNLDNT 1148
Cdd:TIGR01612 1365 DEVKEYTKEIEENNKNIKDELDKSEK---LIKKIKDDINLEECKSKIESTLDDKDIDECIKKIKELKNHILSEESNIDTY 1441
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1149 CIALKVERDNALQNNRDLQLETDMLLH--DQEKLNASLQAALQVKQLL--RSEASGLRAQLDDASKALRK-AELETMQLQ 1223
Cdd:TIGR01612 1442 FKNADENNENVLLLFKNIEMADNKSQHilKIKKDNATNDHDFNINELKehIDKSKGCKDEADKNAKAIEKnKELFEQYKK 1521
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1224 ATNTSLTKLLE-EIKARRAVTDSECIQLLHEKETlAASERRLLAEKEElLSENRIITEKLhKCSEEAAHTEMSLNEKITY 1302
Cdd:TIGR01612 1522 DVTELLNKYSAlAIKNKFAKTKKDSEIIIKEIKD-AHKKFILEAEKSE-QKIKEIKKEKF-RIEDDAAKNDKSNKAAIDI 1598
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1303 LTSEKEMASQ--KMTKLKKHQDSLLKEKSALETQNGVL-LAERENSIKAIGDLKRQCDQ--ES-ANRRIIVQENMKLLGN 1376
Cdd:TIGR01612 1599 QLSLENFENKflKISDIKKKINDCLKETESIEKKISSFsIDSQDTELKENGDNLNSLQEflESlKDQKKNIEDKKKELDE 1678
|
1130 1140 1150 1160 1170 1180
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622847186 1377 IDAlkkELQERKNE-NQELVASKCDLSLMLKEAQNAKKN-LEKEHTHILQAKENLDAELNT 1435
Cdd:TIGR01612 1679 LDS---EIEKIEIDvDQHKKNYEIGIIEKIKEIAIANKEeIESIKELIEPTIENLISSFNT 1736
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
849-1545 |
3.56e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 52.28 E-value: 3.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 849 DLEKKMETSHNQCQELKAGYEKATSETKTKHEEILQNLRKTLLDTEDKLKGAR-------------EENSGLLQELEELR 915
Cdd:TIGR00618 187 AKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQqshayltqkreaqEEQLKKQQLLKQLR 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 916 KQADKAKSLTYLLTSAKKEIELMSEELRgLKSEKQLLSQEGNDLKLENGSLLSKLVELEAKIALLQGDQQKLWSVNETLN 995
Cdd:TIGR00618 267 ARIEELRAQEAVLEETQERINRARKAAP-LAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRR 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 996 LEKEKFLEEKQDAEKHYEQ----EHLNKEVLAVEREKLLKEINVAQEELLKI-NMENDSLQASKVSMQTLIEELQLSKDA 1070
Cdd:TIGR00618 346 LLQTLHSQEIHIRDAHEVAtsirEISCQQHTLTQHIHTLQQQKTTLTQKLQSlCKELDILQREQATIDTRTSAFRDLQGQ 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1071 LiAKTEKDQEERDHLADQIKKLITENFILAKDKDDIIQKLQSSYEELvKDQKALVQDIEDLTAEKKSALEKlsnldntcI 1150
Cdd:TIGR00618 426 L-AHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKER-EQQLQTKEQIHLQETRKKAVVLA--------R 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1151 ALKVERDNALQNNRDLQLETDMLLHDQEKLNAS-LQAALQVKQLLRSEASGLRAQLDDASKALRKAELETMQLQATNTSL 1229
Cdd:TIGR00618 496 LLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRrMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSIL 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1230 TKLLEEIKARRAVTDSECIQLLHEKETLAASERRLLAEKEELLSENRIiteklhkcseeaahtEMSLNEKITYLTSEKEM 1309
Cdd:TIGR00618 576 TQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQP---------------EQDLQDVRLHLQQCSQE 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1310 ASQKMTKLKKHQDSLLKEK-----SALETQNGVLLAERENSIKAIGDLKRQCdqeSANRRIIVQENMKLLGNIDALKKEL 1384
Cdd:TIGR00618 641 LALKLTALHALQLTLTQERvrehaLSIRVLPKELLASRQLALQKMQSEKEQL---TYWKEMLAQCQTLLRELETHIEEYD 717
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1385 QERKNENQELVASKCDLSLMLKEAQNAKKNLEKEHTHILQAKENLDAELNTCCSEKNILLRDSLNLQEECQKLSEEIQEM 1464
Cdd:TIGR00618 718 REFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREED 797
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1465 QQSL-ILEQEARAKEKESSLYENNQLHgrmvLLEQEVEElrvcTEELQSEKFVLLQEKTKSEQEVAEIIEEKELLTAEAA 1543
Cdd:TIGR00618 798 THLLkTLEAEIGQEIPSDEDILNLQCE----TLVQEEEQ----FLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQA 869
|
..
gi 1622847186 1544 QL 1545
Cdd:TIGR00618 870 KI 871
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
917-1143 |
5.73e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 5.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 917 QADKAKSLTYLLTSAKKEIELMSEELRGLKSEKQLLSQEGNDLKLENGSLLSKLVELEAKIALLQGDQQKLwsvnetlnL 996
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL--------E 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 997 EKEKFLEEKQDAEKHYEQEHLNKEVLAVEREKLlkEINVAQEELLKINMENDSLQASKVSMQTLIEELQLSKDALIAKTE 1076
Cdd:COG4942 90 KEIAELRAELEAQKEELAELLRALYRLGRQPPL--ALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1077 KDQEERDHLADQIKKLITENFILA---KDKDDIIQKLQSSYEELVKDQKALVQDIEDLTAEKKSALEKLS 1143
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEalkAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1050-1812 |
5.80e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.66 E-value: 5.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1050 LQASKVSMQTLIEELQLSKDALIAKTEKDQEERDHLADQIKKLITENFILAKDKDDIIQ----------KLQSSYEELVK 1119
Cdd:pfam15921 108 LRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEdsntqieqlrKMMLSHEGVLQ 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1120 DQKALVQDIEDLTAEKKSALEKLSNLDNTCIALKVERdnalqNNRDLQLETDMLLHDQEKLNASLQAalqvkqlLRSEAS 1199
Cdd:pfam15921 188 EIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISK-----ILRELDTEISYLKGRIFPVEDQLEA-------LKSESQ 255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1200 G-----LRAQLDDASKALRKAELEtmqlqatntsLTKLLEEIKARRAVTDSECIQLlhekETLAASERRLLAEKEELLSE 1274
Cdd:pfam15921 256 NkiellLQQHQDRIEQLISEHEVE----------ITGLTEKASSARSQANSIQSQL----EIIQEQARNQNSMYMRQLSD 321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1275 NRIITEKLHKCSEEAAHTemsLNEKITYLTSEKEMASQKMTKLKKHQDSLLKEKSALETQNGVLLAERENSIKAIGDLKR 1354
Cdd:pfam15921 322 LESTVSQLRSELREAKRM---YEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKE 398
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1355 QcdqesaNRRIIVQENMKLLgNIDALKKELQERKNENQELVASkcdLSLMLKEAQNakkNLEKEHTHILQAKENLD--AE 1432
Cdd:pfam15921 399 Q------NKRLWDRDTGNSI-TIDHLRRELDDRNMEVQRLEAL---LKAMKSECQG---QMERQMAAIQGKNESLEkvSS 465
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1433 LNTCCSEKNILLRDSLNlQEECQKLSEEIQEMQQSLI---LEQEARAKEKESSlyENNQLHGRMVLLEQEVEELRVCTEE 1509
Cdd:pfam15921 466 LTAQLESTKEMLRKVVE-ELTAKKMTLESSERTVSDLtasLQEKERAIEATNA--EITKLRSRVDLKLQELQHLKNEGDH 542
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1510 LQSEKF------VLLQEKTKSEQEVAEIIEEKELLTAEAAQLAAHIKTLKSDF-AALSKSKAELQELhscltKILDDlql 1582
Cdd:pfam15921 543 LRNVQTecealkLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLeKEINDRRLELQEF-----KILKD--- 614
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1583 nhevtlAEKAQVmqdnQNLLAEKSEMMLEKDELLKEKEMLAESYFILQKEISQLAktnshisanllesqNENRTLRKDKN 1662
Cdd:pfam15921 615 ------KKDAKI----RELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLL--------------NEVKTSRNELN 670
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1663 KLTlkiRELETLQSFTAAQTAEdamqiMEQMT-KEKTETLASLEDTKQTnaklQNELDTLKENNLKNVEELNKSKELLTV 1741
Cdd:pfam15921 671 SLS---EDYEVLKRNFRNKSEE-----METTTnKLKMQLKSAQSELEQT----RNTLKSMEGSDGHAMKVAMGMQKQITA 738
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622847186 1742 ENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSrdeVTSHQKLEEERSVLNNQLLEMKKSL 1812
Cdd:pfam15921 739 KRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTV---ATEKNKMAGELEVLRSQERRLKEKV 806
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
389-795 |
6.85e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.19 E-value: 6.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 389 EQELALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEvATVSEKSRIME 468
Cdd:PRK02224 201 EKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIA-ETEREREELAE 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 469 LEKDLALRVQEVAELRRRLESNKPAGDVDMSlSLLQEISSLQEKLEVTRTDHQREITSLKEHfGAREETHQKEIKALYTA 548
Cdd:PRK02224 280 EVRDLRERLEELEEERDDLLAEAGLDDADAE-AVEARREELEDRDEELRDRLEECRVAAQAH-NEEAESLREDADDLEER 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 549 TEKLSKENESLKSKLEHANKEnsdvialwKSKLETAIASHQQAMEELKVSFS------KGLGTETAEFAELKTQIEKMRL 622
Cdd:PRK02224 358 AEELREEAAELESELEEAREA--------VEDRREEIEELEEEIEELRERFGdapvdlGNAEDFLEELREERDELREREA 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 623 DYQHEIENLQNQ-----------------QDSERSAHA---KEMEALRAKLMKVIKEKENSLEAIKSKLDKAEDqhLVEM 682
Cdd:PRK02224 430 ELEATLRTARERveeaealleagkcpecgQPVEGSPHVetiEEDRERVEELEAELEDLEEEVEEVEERLERAED--LVEA 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 683 EETLNKLQEA--------EIKKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLAEMEAKFREKDER 754
Cdd:PRK02224 508 EDRIERLEERredleeliAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKER 587
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 1622847186 755 EEQLIKAKEKLEnDIAEIMKMSG---DNSSQLTKMNDELR--LKER 795
Cdd:PRK02224 588 IESLERIRTLLA-AIADAEDEIErlrEKREALAELNDERRerLAEK 632
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
540-1093 |
7.39e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.22 E-value: 7.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 540 KEIKALYTATEKLSKENESLKSKLEHANKENSDVIALWK--SKLETAIASHQQAMEELKvsfsKGLGTETAEFAELKTQI 617
Cdd:PRK03918 172 KEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINeiSSELPELREELEKLEKEV----KELEELKEEIEELEKEL 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 618 EKMRLDYQHEIENLQNQQDSersahakeMEALRAKLmKVIKEKENSLEAIKSKLDKAEDqhLVE-MEETLNKLQEAEIKK 696
Cdd:PRK03918 248 ESLEGSKRKLEEKIRELEER--------IEELKKEI-EELEEKVKELKELKEKAEEYIK--LSEfYEEYLDELREIEKRL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 697 EKFaeaSEEAVSVQRSMQETVNKlhqkeeqfnmlSSDLEKLRENLAEMEAKFREKDEREEQLIKAKEKLENdIAEIMKMS 776
Cdd:PRK03918 317 SRL---EEEINGIEERIKELEEK-----------EERLEELKKKLKELEKRLEELEERHELYEEAKAKKEE-LERLKKRL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 777 GDNSsqLTKMNDELRLKERYVEELQLKLTKANENASFLQKSIEDMTLKAEQ-----------SQQEAAEKHEEEKKELER 845
Cdd:PRK03918 382 TGLT--PEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEElkkakgkcpvcGRELTEEHRKELLEEYTA 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 846 KLSDLEKKMETSHNQCQELKAgyEKATSETKTKHEEILQNLRKTLldteDKLKGAREENSGLlqELEELRKQADKAKSLT 925
Cdd:PRK03918 460 ELKRIEKELKEIEEKERKLRK--ELRELEKVLKKESELIKLKELA----EQLKELEEKLKKY--NLEELEKKAEEYEKLK 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 926 YLLTSAKKEIELMSEELR---GLKSEKQLLSQEGNDLKLENGSLLSKLVELEAKiallqgDQQKLWSVNETLNLEKEKFL 1002
Cdd:PRK03918 532 EKLIKLKGEIKSLKKELEkleELKKKLAELEKKLDELEEELAELLKELEELGFE------SVEELEERLKELEPFYNEYL 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1003 EEKqDAEKHYEQEHLNKEVLAVEREKLLKEINVAQEELLKINMENDSLQaSKVSMQTL--IEELQLSKDALIAKTEKDQE 1080
Cdd:PRK03918 606 ELK-DAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELE-KKYSEEEYeeLREEYLELSRELAGLRAELE 683
|
570
....*....|...
gi 1622847186 1081 ERDHLADQIKKLI 1093
Cdd:PRK03918 684 ELEKRREEIKKTL 696
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1623-1921 |
8.69e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.09 E-value: 8.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1623 AESYFILQKEISQLAKTnsHISANLLESQNENRTLRKDKNKLTLKIRELETLQSFTAAQTAEDAMQImEQMTKEKTETLA 1702
Cdd:COG1196 212 AERYRELKEELKELEAE--LLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLEL-EELELELEEAQA 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1703 SLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIEtlkQAAAQKSQQLSALQEENVKLAEELG 1782
Cdd:COG1196 289 EEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELE---ELEEELEEAEEELEEAEAELAEAEE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1783 RSRDEVTSHQKLEEERSVLNNQLLEMKKSLPSNTLRESKFIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLR 1862
Cdd:COG1196 366 ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE 445
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1622847186 1863 GENASAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDTQADEDERAQ 1921
Cdd:COG1196 446 EAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE 504
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1377-1581 |
1.08e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 1.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1377 IDALKKELQERKNEnqelvaskcdlslmLKEAQNAKKNLEKEHTHILQAKENLDAELNTCCSEKNILLRDSLNLQEECQK 1456
Cdd:COG4942 22 AAEAEAELEQLQQE--------------IAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1457 LSEEIQEMQQSLIlEQEARAKEKESSLYENNQLHGRMVLLEQE----------------------VEELRVCTEELQSEK 1514
Cdd:COG4942 88 LEKEIAELRAELE-AQKEELAELLRALYRLGRQPPLALLLSPEdfldavrrlqylkylaparreqAEELRADLAELAALR 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622847186 1515 FVLLQEKTKSEQEVAEIIEEKELLTAEAAQLAAHIKTLKSDFAALSKSKAELQELHSCLTKILDDLQ 1581
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
871-1141 |
1.28e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 1.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 871 ATSETKTKHEEILQNLRKTLLDTEDKLKGAREENSGLLQELEELRKQadkaksltylltsakkeIELMSEELRGLKSEKQ 950
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERR-----------------IAALARRIRALEQELA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 951 LLSQEGNDLKLENGSLLSKLVELEAKIALLQGDQQKLWSVNetlnleKEKFLEEKQDAEKHYEQEHLNKEVLAvEREKLL 1030
Cdd:COG4942 80 ALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQP------PLALLLSPEDFLDAVRRLQYLKYLAP-ARREQA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1031 KEINVAQEELLKINMEndsLQASKVSMQTLIEELQLSKDALiaktEKDQEERDHLADQIKKlitenfilakdkddIIQKL 1110
Cdd:COG4942 153 EELRADLAELAALRAE---LEAERAELEALLAELEEERAAL----EALKAERQKLLARLEK--------------ELAEL 211
|
250 260 270
....*....|....*....|....*....|.
gi 1622847186 1111 QSSYEELVKDQKALVQDIEDLTAEKKSALEK 1141
Cdd:COG4942 212 AAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
428-1130 |
1.98e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.63 E-value: 1.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 428 LNQLEEEKRKVEDLQFRVEEEsitkgdlevatvseksrIMELEKDLALRVQEVAELRRRLESNKpagdvDMSLSLLQEIS 507
Cdd:TIGR04523 126 LNKLEKQKKENKKNIDKFLTE-----------------IKKKEKELEKLNNKYNDLKKQKEELE-----NELNLLEKEKL 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 508 SLQEKLEVTRTDHQReitslKEHFGAREETHQKEIKALYTATEKLSKENESLKSKLEHANKENSD---VIALWKSKLETA 584
Cdd:TIGR04523 184 NIQKNIDKIKNKLLK-----LELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEkttEISNTQTQLNQL 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 585 IASHQQAMEELKvsfSKGLGTETAEfaELKTQIEKMRLDYQHEIENLQNQQDSERSAHAKEMealraklmkvIKEKENSL 664
Cdd:TIGR04523 259 KDEQNKIKKQLS---EKQKELEQNN--KKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSE----------LKNQEKKL 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 665 EAIKSKLDKAEdQHLVEMEETLNKLQEAEIKKEKFAEASEEAVSVQRSMQETVNKLHQ-KEEQFNMLSSDLEKLRENLAE 743
Cdd:TIGR04523 324 EEIQNQISQNN-KIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQsYKQEIKNLESQINDLESKIQN 402
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 744 MEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERYVEELQLKLTKANENASFLQKSIEDMTL 823
Cdd:TIGR04523 403 QEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQ 482
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 824 KAEQSQQEaAEKHEEEKKELERKLSDLEKKMETSHNQCQELKAGYEKATSETKTKHEEIlqnlrktlLDTEDKLKgaree 903
Cdd:TIGR04523 483 NLEQKQKE-LKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKI--------SDLEDELN----- 548
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 904 nsgllqeleelrkqadkaksltylltsaKKEIELMSEELRGLKSEKQllsQEGNDLKLENGSLLSKLVELEAKIALLQGD 983
Cdd:TIGR04523 549 ----------------------------KDDFELKKENLEKEIDEKN---KEIEELKQTQKSLKKKQEEKQELIDQKEKE 597
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 984 QQKLWSVNETLNLEKEKFLEEKQDAEKHYEQEHLNKEVLAVEREKLLKEINVAQEELLKI-NMENDSLQASKVSMQTLIE 1062
Cdd:TIGR04523 598 KKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIrNKWPEIIKKIKESKTKIDD 677
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622847186 1063 ELQLSKDALiaktekdQEERDHLADQIKKLITEN-FILAKDKDDIIQKLQSSYEELVKDQKALVQDIED 1130
Cdd:TIGR04523 678 IIELMKDWL-------KELSLHYKKYITRMIRIKdLPKLEEKYKEIEKELKKLDEFSKELENIIKNFNK 739
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
588-1465 |
2.09e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 49.79 E-value: 2.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 588 HQQAMEElKVSFSKGLGTETAEFAElktqIEKMR---LDYQHEIENLQNQQDS---ERSAHAKEMEALRAKLMKVIKEKE 661
Cdd:pfam01576 35 HQQLCEE-KNALQEQLQAETELCAE----AEEMRarlAARKQELEEILHELESrleEEEERSQQLQNEKKKMQQHIQDLE 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 662 NSLEA-----IKSKLDKAE-DQHLVEMEETLNKLQEAEIKKEKFAEASEEAVSvqrsmqETVNKLHQKEEQFNMLSSDLE 735
Cdd:pfam01576 110 EQLDEeeaarQKLQLEKVTtEAKIKKLEEDILLLEDQNSKLSKERKLLEERIS------EFTSNLAEEEEKAKSLSKLKN 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 736 KLRENLAEMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERYVEELQLKLTKANENASFLQ 815
Cdd:pfam01576 184 KHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNAL 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 816 KSIEDMTLKAEQSQQEAAEKHEEEKKELERK----------LSDLEKKMETSHNQcQELKAGYE-------KATSETKTK 878
Cdd:pfam01576 264 KKIRELEAQISELQEDLESERAARNKAEKQRrdlgeelealKTELEDTLDTTAAQ-QELRSKREqevtelkKALEEETRS 342
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 879 HEEILQNLRK----TLLDTEDKLKGAREENSGLLQELEELRKQADKAKSLTYLLTSAKKEIELMSEELRGLKSEKQLLSQ 954
Cdd:pfam01576 343 HEAQLQEMRQkhtqALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLS 422
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 955 EGNDLKLENGSLLSKL-VELEAKIALLQGDQQKlwsvNETLNLEKEKFLEEKQDAEKHYEQEHLNKEVLAVEREKLLKEI 1033
Cdd:pfam01576 423 ESERQRAELAEKLSKLqSELESVSSLLNEAEGK----NIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDER 498
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1034 NVAQEELlkiNMENDSLQASKVSMQTLIEELQLSKdaliAKTEKDQEERDHLADQIKKlitenfiLAKDKDDIIQKLQ-- 1111
Cdd:pfam01576 499 NSLQEQL---EEEEEAKRNVERQLSTLQAQLSDMK----KKLEEDAGTLEALEEGKKR-------LQRELEALTQQLEek 564
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1112 -SSYEELVKDQKALVQDIEDLTAEKKSALEKLSNLD--------------NTCIALKVERDNALQNNRDLQLETDMLLHD 1176
Cdd:pfam01576 565 aAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEkkqkkfdqmlaeekAISARYAEERDRAEAEAREKETRALSLARA 644
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1177 QEKLNASLQAALQVKQLLRSEASGLRAQLDDASKALRKAELETMQLQATNTSLTKLLEEIKARRAVTDSECIQLLHEKET 1256
Cdd:pfam01576 645 LEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNMQA 724
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1257 LAASERRLLAEKEELLSENRIITEKlhkcseeaahtemSLNEKITYLTSEKEMASQKMTKLKKHQDSLLKEKSALETQNg 1336
Cdd:pfam01576 725 LKAQFERDLQARDEQGEEKRRQLVK-------------QVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQIDAAN- 790
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1337 vllAERENSIKAI-------GDLKRQCDQESANRRIIV---QENMKLLGNIDALKKELQErknenqelvaskcdlslMLK 1406
Cdd:pfam01576 791 ---KGREEAVKQLkklqaqmKDLQRELEEARASRDEILaqsKESEKKLKNLEAELLQLQE-----------------DLA 850
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|....*....
gi 1622847186 1407 EAQNAKKNLEKEhthilqaKENLDAELNTCCSEKNILLRDSLNLQEECQKLSEEIQEMQ 1465
Cdd:pfam01576 851 ASERARRQAQQE-------RDELADEIASGASGKSALQDEKRRLEARIAQLEEELEEEQ 902
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
1192-1748 |
2.17e-05 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 49.74 E-value: 2.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1192 QLLRSEASGLRAQLDDASKA---LRKAELETMQLQATNTSLtKLLEEIKARRAVTDSECIQLLHEKETLAASERRLLAEK 1268
Cdd:pfam05557 17 EKKQMELEHKRARIELEKKAsalKRQLDRESDRNQELQKRI-RLLEKREAEAEEALREQAELNRLKKKYLEALNKKLNEK 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1269 EELLSENRIITEKLHKCSEEAAHTEMSLNEKITYLTSEKEMASQKMTKLKKHQDSLLKEKSALETQNGvLLAERENSIKa 1348
Cdd:pfam05557 96 ESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEKQQS-SLAEAEQRIK- 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1349 igDLKRQCdQESANRRIIVQENMKLLGNIDALKKELQERKNENQELVASKCDLSLMLKEAQNAKKNLEKEHTHILQA--- 1425
Cdd:pfam05557 174 --ELEFEI-QSQEQDSEIVKNSKSELARIPELEKELERLREHNKHLNENIENKLLLKEEVEDLKRKLEREEKYREEAatl 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1426 ---KENLDAELNtccSEKNILLRDSLNLQEEcQKLSEEIQEMQQslilEQEARAKEKESSLYENNQLHGRMVLLEQEVEE 1502
Cdd:pfam05557 251 eleKEKLEQELQ---SWVKLAQDTGLNLRSP-EDLSRRIEQLQQ----REIVLKEENSSLTSSARQLEKARRELEQELAQ 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1503 LRVCTEELQSekfvllqeKTKSEQEVAEIIEEKE-LLTAEAAQLAAHIKTLKSDFaALSKSKAELQELHSCLTKILDDLQ 1581
Cdd:pfam05557 323 YLKKIEDLNK--------KLKRHKALVRRLQRRVlLLTKERDGYRAILESYDKEL-TMSNYSPQLLERIEEAEDMTQKMQ 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1582 LNHEVTLA--EKAQVMQDNQNLLAEKSEM---MLEKDELLKEKEMLAESYFILQKEISQLAKTNSHI--SANLLESQNEN 1654
Cdd:pfam05557 394 AHNEEMEAqlSVAEEELGGYKQQAQTLERelqALRQQESLADPSYSKEEVDSLRRKLETLELERQRLreQKNELEMELER 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1655 RTLRKDKNKLTLKIREletLQSFTAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNK 1734
Cdd:pfam05557 474 RCLQGDYDPKKTKVLH---LSMNPAAEAYQQRKNQLEKLQAEIERLKRLLKKLEDDLEQVLRLPETTSTMNFKEVLDLRK 550
|
570
....*....|....
gi 1622847186 1735 SKELLTVENQKMEE 1748
Cdd:pfam05557 551 ELESAELKNQRLKE 564
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
405-1363 |
2.59e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 49.40 E-value: 2.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 405 ELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKD-LALRVQEVAEL 483
Cdd:pfam01576 72 ELEEILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDiLLLEDQNSKLS 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 484 RRRLESNKPAGDVDMSLSLLQEISSLQEKLevtRTDHQREITSLkehfgarEETHQKEikalytatEKLSKENESLKSKL 563
Cdd:pfam01576 152 KERKLLEERISEFTSNLAEEEEKAKSLSKL---KNKHEAMISDL-------EERLKKE--------EKGRQELEKAKRKL 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 564 EHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKgLGTETAEfaelKTQIEKMRLDYQHEIENLQNQQDSERSAha 643
Cdd:pfam01576 214 EGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALAR-LEEETAQ----KNNALKKIRELEAQISELQEDLESERAA-- 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 644 kemealRAKLMKVIKEKENSLEAIKSKLDKAEDQHLVEMEETLNKLQE-AEIKKEKFAEASEEAVSVQRSMQ---ETVNK 719
Cdd:pfam01576 287 ------RNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEvTELKKALEEETRSHEAQLQEMRQkhtQALEE 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 720 LHQKEEQFNMLSSDLEKLRENL----AEMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKER 795
Cdd:pfam01576 361 LTEQLEQAKRNKANLEKAKQALesenAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQS 440
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 796 YVEELQLKLTKANENASFLQKSiedmtLKAEQSQQEAAEKHEEEKKELERKLSDLEKKMETSHNQCQELKAGYEkatsET 875
Cdd:pfam01576 441 ELESVSSLLNEAEGKNIKLSKD-----VSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEE----EA 511
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 876 KTKHEEILQNLRKTLLDTEDKLkgarEENSGLLQELEELRKQADKAksltylLTSAKKEIELMSEELRGLKSEKQLLSQE 955
Cdd:pfam01576 512 KRNVERQLSTLQAQLSDMKKKL----EEDAGTLEALEEGKKRLQRE------LEALTQQLEEKAAAYDKLEKTKNRLQQE 581
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 956 GNDLKLENGSLLSKLVELEAKiallqgdQQKLWSVNETLNLEKEKFLEEKQDAEKhyeqEHLNKEVLAVEREKLLKEINV 1035
Cdd:pfam01576 582 LDDLLVDLDHQRQLVSNLEKK-------QKKFDQMLAEEKAISARYAEERDRAEA----EAREKETRALSLARALEEALE 650
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1036 AQEELLKIN----MENDSLQASKVSMQTLIEELQLSKDALIAKTEKDQEERDHLADQIKklITENFILAKD------KDD 1105
Cdd:pfam01576 651 AKEELERTNkqlrAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQ--ATEDAKLRLEvnmqalKAQ 728
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1106 IIQKLQSSYEELVKDQKALVQDIEDLTAE--------------KKSALEKLSNLDNTCIALKVERDNALQNNRDLQLETD 1171
Cdd:pfam01576 729 FERDLQARDEQGEEKRRQLVKQVRELEAElederkqraqavaaKKKLELDLKELEAQIDAANKGREEAVKQLKKLQAQMK 808
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1172 MLLHDQEKLNASLQAALqvkqllrseasglrAQLDDASKALRKAELETMQLQATNTSLTKLLEEIKARRAVTDSECIQLL 1251
Cdd:pfam01576 809 DLQRELEEARASRDEIL--------------AQSKESEKKLKNLEAELLQLQEDLAASERARRQAQQERDELADEIASGA 874
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1252 HEKETLAASERRLLAEKEELLSENriiteklhkcSEEAAHTEMsLNEKITYLTSEKEMASQKMTKLKKHQDSLLKEKSAL 1331
Cdd:pfam01576 875 SGKSALQDEKRRLEARIAQLEEEL----------EEEQSNTEL-LNDRLRKSTLQVEQLTTELAAERSTSQKSESARQQL 943
|
970 980 990 1000
....*....|....*....|....*....|....*....|....*..
gi 1622847186 1332 ETQNGVL---LAERENSIKA------------IGDLKRQCDQESANR 1363
Cdd:pfam01576 944 ERQNKELkakLQEMEGTVKSkfkssiaaleakIAQLEEQLEQESRER 990
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1589-1783 |
3.98e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 3.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1589 AEKAQVMQDNQNLLAEKSEMMLEKDELLKEKEMLAESYFILQKEISQLAKTNSHISANLLESQNENRTLRKDKNKLTLKI 1668
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1669 RE-------------LETLQSFTAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKS 1735
Cdd:COG4942 107 AEllralyrlgrqppLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEE 186
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1622847186 1736 KELLtveNQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGR 1783
Cdd:COG4942 187 RAAL---EALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
352-569 |
4.74e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 4.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 352 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARdghdQHVLELEAKMDQLRTMVEAADREKVELLNQL 431
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA----RRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 432 EEEKRKVEDL---QFRVEEESITKGDLEVATVSEKSRIMELEKDLA-LRVQEVAELRRRLESNKpagdvdmslSLLQEIS 507
Cdd:COG4942 100 EAQKEELAELlraLYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLApARREQAEELRADLAELA---------ALRAELE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622847186 508 SLQEKLEVTRTDHQREITSLKEHFGAREET---HQKEIKALYTATEKLSKENESLKSKLEHANKE 569
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLlarLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1710-1934 |
5.27e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 48.37 E-value: 5.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1710 TNAKLQNELDTLKENNLKNVEE------LNKSKELLtvenQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELG- 1782
Cdd:PRK11281 37 TEADVQAQLDALNKQKLLEAEDklvqqdLEQTLALL----DKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDe 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1783 --RSRDEVTSHQKLEEERSVLNNQLLEMKKSLpsntlreskfiKDADEEKASLQKSISITSALLTEKDAELEKLRNEvtv 1860
Cdd:PRK11281 113 etRETLSTLSLRQLESRLAQTLDQLQNAQNDL-----------AEYNSQLVSLQTQPERAQAALYANSQRLQQIRNL--- 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622847186 1861 LRGENASAKSLHSvvqtleSDKVKLELKVKNLELQLKENKRQLSSSSGNTDT---QADE-DERAQESQQMIDFLNSVI 1934
Cdd:PRK11281 179 LKGGKVGGKALRP------SQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLlqkQRDYlTARIQRLEHQLQLLQEAI 250
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1107-1847 |
5.68e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 48.18 E-value: 5.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1107 IQKLQSSYEELVKDQKALVQDIEDLTAEKKSALEKLsNLDNTCIALKVERDnaLQNNRDLQLETDMLLHDQEKLNASLQA 1186
Cdd:pfam05483 90 IKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQEL-QFENEKVSLKLEEE--IQENKDLIKENNATRHLCNLLKETCAR 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1187 ALQVKQLLRSEASGLRAQLDDASKALRK--AELETMQLQATNTSLTK--LLEEIKARRAVTDSECIQLLHEKETLAASER 1262
Cdd:pfam05483 167 SAEKTKKYEYEREETRQVYMDLNNNIEKmiLAFEELRVQAENARLEMhfKLKEDHEKIQHLEEEYKKEINDKEKQVSLLL 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1263 RLLAEKEE-------LLSENRIITEKLHKCSEEAAHTEMSLNEKITYLTSEKEMASQKMTKLKKHQDSLLKEKSALETQN 1335
Cdd:pfam05483 247 IQITEKENkmkdltfLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTI 326
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1336 GVLLAERENSIKaigdlkrQCDQESANRRIIVQENMKLLGNIDALKKELQERKNENQElvaskcDLSLMLKEAQNAKKNL 1415
Cdd:pfam05483 327 CQLTEEKEAQME-------ELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNED------QLKIITMELQKKSSEL 393
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1416 EkEHTHILQAKENLDAELNTCCSEKNILLRDslnlQEECQKLSEEIQEMQQSLILEQEARAKEKESSLYENNQLHGRMVL 1495
Cdd:pfam05483 394 E-EMTKFKNNKEVELEELKKILAEDEKLLDE----KKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEH 468
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1496 LEQEVEELRVCTEELQSEKFVLLQEKTKSEQEVAEIIEEKELLTAEAAQLAAHIKTLKSDFAALSKSKAELQELHsclTK 1575
Cdd:pfam05483 469 YLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKE---MN 545
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1576 ILDDLQLNHEVTLAEKAQVMQDNQNllAEKSEMMLEKDELLKEKEMLaesyfILQKEISQLAKTNSHISANLLESQNENR 1655
Cdd:pfam05483 546 LRDELESVREEFIQKGDEVKCKLDK--SEENARSIEYEVLKKEKQMK-----ILENKCNNLKKQIENKNKNIEELHQENK 618
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1656 TLRKDKNKLTlkireletlQSFTAAQTAEDAMQIMEQMTKEKTETLASledtkqtnaKLQNELDTLKENNLKNVEELNKS 1735
Cdd:pfam05483 619 ALKKKGSAEN---------KQLNAYEIKVNKLELELASAKQKFEEIID---------NYQKEIEDKKISEEKLLEEVEKA 680
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1736 KelltVENQKMEEFRKEIETLKQaaaQKSQQLSALQEENVKLAEELGRSRD-EVTSHQKLEEERSVLNNQLLEMKKSLPS 1814
Cdd:pfam05483 681 K----AIADEAVKLQKEIDKRCQ---HKIAEMVALMEKHKHQYDKIIEERDsELGLYKNKEQEQSSAKAALEIELSNIKA 753
|
730 740 750
....*....|....*....|....*....|...
gi 1622847186 1815 NTLRESKFIKDADEEKASLQKSISITSALLTEK 1847
Cdd:pfam05483 754 ELLSLKKQLEIEKEEKEKLKMEAKENTAILKDK 786
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
877-1885 |
7.89e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.12 E-value: 7.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 877 TKHEEILQNLRKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKSLTYLLTSAKKEIELMSEELRGLKSEKQLLSQeg 956
Cdd:TIGR00606 182 TRYIKALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEH-- 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 957 ndlklengsLLSKLVELEAKIALLQGDQQKLWSVNETLNLEKEKFLEEKQDAEKHYEQEHlNKEVLAVEREKLLkeinvA 1036
Cdd:TIGR00606 260 ---------NLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNH-QRTVREKERELVD-----C 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1037 QEELLKINMENDSLQASKVSMQTLIEELQLSKDALIAKTEKDQEERDHLADQIKKLITENFILAKDKDDIIQKLQSSYEE 1116
Cdd:TIGR00606 325 QRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQE 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1117 lvKDQKALVQDIEDLTAEKKSALEKLSNLdntcialkveRDNALQNNRDLQLETDMLLHDQEKLNASL----QAALQVKQ 1192
Cdd:TIGR00606 405 --DEAKTAAQLCADLQSKERLKQEQADEI----------RDEKKGLGRTIELKKEILEKKQEELKFVIkelqQLEGSSDR 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1193 LLRSEASgLRAQLDDASKALRKAELETMQLQATNTSLTKLleEIKARRAVTDSECIQLLHEKETLAASErrlLAEKEELL 1272
Cdd:TIGR00606 473 ILELDQE-LRKAERELSKAEKNSLTETLKKEVKSLQNEKA--DLDRKLRKLDQEMEQLNHHTTTRTQME---MLTKDKMD 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1273 SENRIITEKLHKCSEEAAHTEMSLNEKIT-----YLTSEKEMASQKMTKLKKHQDSLLKEKSALETQNGVLLAERENSIK 1347
Cdd:TIGR00606 547 KDEQIRKIKSRHSDELTSLLGYFPNKKQLedwlhSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYED 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1348 AIGDLKRQCDQESanrriivqenmkllgNIDALKKELQERKNENQELVASKCDLSLMLKEAQNAKKNLEKEHTHILQAKe 1427
Cdd:TIGR00606 627 KLFDVCGSQDEES---------------DLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTE- 690
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1428 nldAELNTCCSEKNILLRDSLNLQEECQKLSEEIQEMQQSLILEQEARAKEKESSLYENNQLHGRMVLLEQEVEELR--V 1505
Cdd:TIGR00606 691 ---AELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKndI 767
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1506 CTEELQSEKFVLLQEKTKSEQEVAEIIEEKELLTAEA----AQLAAHIKTLKSDFAaLSKSKAELQELHSCLTKILDDLQ 1581
Cdd:TIGR00606 768 EEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVerkiAQQAAKLQGSDLDRT-VQQVNQEKQEKQHELDTVVSKIE 846
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1582 LNHEVTlAEKAQVMQDNQNLLAEKSEMMLEKDELLKEKEMLAESYFILQKEISQLaktNSHISANLLESQNENRTLRKDK 1661
Cdd:TIGR00606 847 LNRKLI-QDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSL---IREIKDAKEQDSPLETFLEKDQ 922
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1662 NKLTLKIRELETlqsftAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNaklqneldtlKENNLKNVE-ELNKSKELLT 1740
Cdd:TIGR00606 923 QEKEELISSKET-----SNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDG----------KDDYLKQKEtELNTVNAQLE 987
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1741 VENQKMEEFRKEIETLKQAAAQKSQQLSALQEE--NVKLAEELGRSRDEVTSHQKLEEERSVLN-----NQLLEMKKSLP 1813
Cdd:TIGR00606 988 ECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNltLRKRENELKEVEEELKQHLKEMGQMQVLQmkqehQKLEENIDLIK 1067
|
970 980 990 1000 1010 1020 1030
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622847186 1814 SNTLRESKFIKDADEEKASLQKSISITSAllteKDAElEKLRNEVTVLRGENASAKSLHSVVQTLESDKVKL 1885
Cdd:TIGR00606 1068 RNHVLALGRQKGYEKEIKHFKKELREPQF----RDAE-EKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKF 1134
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1386-1893 |
7.96e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 47.73 E-value: 7.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1386 ERKNENQE-LVASKCDLSLMLKEAQNAKKNLEKehthILQAKENLDAELNTCCSEKNILLRDSLNLQEECQKLSEEIQEM 1464
Cdd:PRK02224 223 ERYEEQREqARETRDEADEVLEEHEERREELET----LEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDL 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1465 QQSLILEqearAKEKESSLYENNQLHGRMVLLEQEVEELRVCTEELQSEKFVLLQEKTKSEQEVAEIIEEKELLTAEAAQ 1544
Cdd:PRK02224 299 LAEAGLD----DADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEE 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1545 LAAHIKTLKSDFAALSKSKAELQELHSCLTKILDDLQLNHEVTLAEKAQVMQDNQNLLAEKSEmmlEKDELLKEKEMLAE 1624
Cdd:PRK02224 375 AREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRT---ARERVEEAEALLEA 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1625 SYFilqKEISQLAKTNSHISA------NLLESQNENRTLRKDKNKLTLKIRELETLQSFTA--------AQTAEDAMQIM 1690
Cdd:PRK02224 452 GKC---PECGQPVEGSPHVETieedreRVEELEAELEDLEEEVEEVEERLERAEDLVEAEDrierleerREDLEELIAER 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1691 EQMTKEKTETLASLEDTKQtnaKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQ------AAAQKS 1764
Cdd:PRK02224 529 RETIEEKRERAEELRERAA---ELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERirtllaAIADAE 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1765 QQLSALQEENVKLAEELGRSRDEVTS----HQKLEEERSVLNNQLLEMKKSLPSNTLRE-SKFIKDADEEKASLQKSI-S 1838
Cdd:PRK02224 606 DEIERLREKREALAELNDERRERLAEkrerKRELEAEFDEARIEEAREDKERAEEYLEQvEEKLDELREERDDLQAEIgA 685
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 1622847186 1839 ITSALltekdAELEKLRNEVTVLRGENASAKSLHSVVQTLES--DKVKLELKVKNLE 1893
Cdd:PRK02224 686 VENEL-----EELEELRERREALENRVEALEALYDEAEELESmyGDLRAELRQRNVE 737
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
514-1138 |
8.12e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.21 E-value: 8.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 514 EVTRTDHQREITSLKEHFGAREETHQKEIKALYTATEKLSKENESLKSKLEHANKENSDVIALWKSKLETAIASHQQAME 593
Cdd:PTZ00121 1059 KAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAED 1138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 594 ELKVsfskglgtETAEFAElktqiEKMRLDYQHEIENLQNQQDSERSAHAKEMEALRaKLMKVIKEKENSLEAIKSKLDK 673
Cdd:PTZ00121 1139 ARKA--------EEARKAE-----DAKRVEIARKAEDARKAEEARKAEDAKKAEAAR-KAEEVRKAEELRKAEDARKAEA 1204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 674 AEDQHLVEMEETLNKLQEAEIKKE--KFAEASEEAVSVQRSMQETVNKLHQKEEQFNML----SSDLEKLRENLAEMEAK 747
Cdd:PTZ00121 1205 ARKAEEERKAEEARKAEDAKKAEAvkKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAhfarRQAAIKAEEARKADELK 1284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 748 FREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERYVEELQLKLTKANENASFLQKSIEDMTLKAEQ 827
Cdd:PTZ00121 1285 KAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE 1364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 828 SQQEAAEKHEEEKK---------ELERKLSDLEKKMETSHNQCQELK--AGYEKATSETKTKHEEI--LQNLRKTLLDTE 894
Cdd:PTZ00121 1365 KAEAAEKKKEEAKKkadaakkkaEEKKKADEAKKKAEEDKKKADELKkaAAAKKKADEAKKKAEEKkkADEAKKKAEEAK 1444
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 895 --DKLKGAREE---------NSGLLQELEELRKQADKAKSLTYLLTSAkKEIELMSEELRGLKSEKQLLSQEGNDLKLEN 963
Cdd:PTZ00121 1445 kaDEAKKKAEEakkaeeakkKAEEAKKADEAKKKAEEAKKADEAKKKA-EEAKKKADEAKKAAEAKKKADEAKKAEEAKK 1523
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 964 GSLLSKLVEL----EAKIALLQGDQQKLWSVNETLNLEKEKFLEEKQDAEKHYEQEHLNKEVLAVEREKLLKEINVAQEE 1039
Cdd:PTZ00121 1524 ADEAKKAEEAkkadEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEE 1603
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1040 LLKINMEN-DSLQASKVSMQTLIEELQLSKDALIAKTEKDQEERDhlADQIKKLITENFILAKDKDDIIQKLQSSYEELV 1118
Cdd:PTZ00121 1604 EKKMKAEEaKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKK--AEELKKAEEENKIKAAEEAKKAEEDKKKAEEAK 1681
|
650 660
....*....|....*....|
gi 1622847186 1119 KDQKALVQDIEDLTAEKKSA 1138
Cdd:PTZ00121 1682 KAEEDEKKAAEALKKEAEEA 1701
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1376-1901 |
8.12e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 47.97 E-value: 8.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1376 NIDALKKELQERKNENQELVASKCDLSLMLKEAQNAKKNLEKEHTHILQAKENLDAELNTCCSEKNILLRDSLNLQEECQ 1455
Cdd:PRK01156 184 NIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAES 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1456 KLSEEiqEMQQSLILEQEARAKEKESS-LYENNQLHGRMVLLEQEVEELRVCTEELQSE--KFVLLQEKTKSEQEVAEII 1532
Cdd:PRK01156 264 DLSME--LEKNNYYKELEERHMKIINDpVYKNRNYINDYFKYKNDIENKKQILSNIDAEinKYHAIIKKLSVLQKDYNDY 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1533 EEKELLTAEAAQLAAHIKTLKSDFAALSKS-----------KAELQELHSCLTKILDDLQLNHEVTLAEKAQVMQDNQNL 1601
Cdd:PRK01156 342 IKKKSRYDDLNNQILELEGYEMDYNSYLKSieslkkkieeySKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDI 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1602 LAEKSEMMLEKDELLKEKEMLAESYFILQKEiSQLAKTNSHI----SANLLESQNEnrtlrkDKNKLTLKIRELETLQSf 1677
Cdd:PRK01156 422 SSKVSSLNQRIRALRENLDELSRNMEMLNGQ-SVCPVCGTTLgeekSNHIINHYNE------KKSRLEEKIREIEIEVK- 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1678 TAAQTAEDAMQIMEQMTKEKTETLAS----LEDTKQTNAKLQNELDTLKENNLKNVEELNKSKEL-LTVENQKMEEFRK- 1751
Cdd:PRK01156 494 DIDEKIVDLKKRKEYLESEEINKSINeynkIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLkLEDLDSKRTSWLNa 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1752 -------EIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVTSH-QKLEEERSVLNNQ--LLEMKKSLPSNTLRESK 1821
Cdd:PRK01156 574 lavisliDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSiREIENEANNLNNKynEIQENKILIEKLRGKID 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1822 FIKDADEEKASLQKSISITSALLTEKDAELEKLRNEvtvLRGENASAKSLHSVVQTLESDKVKLELKVKNLELQLKENKR 1901
Cdd:PRK01156 654 NYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKA---LDDAKANRARLESTIEILRTRINELSDRINDINETLESMKK 730
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
354-945 |
9.45e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 9.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 354 QEALKEKQQhIEQLLAERDLeRAEVAKATSHVGEIEQELALARDGHDQHVLEL-EAKMDQLRTMVEAADREKVELLNQLE 432
Cdd:COG4913 242 EALEDAREQ-IELLEPIREL-AERYAAARERLAELEYLRAALRLWFAQRRLELlEAELEELRAELARLEAELERLEARLD 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 433 EEKRKVEDLQFRVEEESitkGDlevatvseksRIMELEKDLALRVQEVAELRRRLESnkpagdvdmslsLLQEISSLQEK 512
Cdd:COG4913 320 ALREELDELEAQIRGNG---GD----------RLEQLEREIERLERELEERERRRAR------------LEALLAALGLP 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 513 LEVTR---TDHQREITSLKEHFGAREETHQKEIKALYTATEKLSKENESLKSKLEH--ANKEN--SDVIALwKSKLETAI 585
Cdd:COG4913 375 LPASAeefAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASleRRKSNipARLLAL-RDALAEAL 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 586 ASHQQAM----EELKV---------SFSKGLGT-------ETAEFAELKTQIE----KMRLDYQHEIENLQNQQ------ 635
Cdd:COG4913 454 GLDEAELpfvgELIEVrpeeerwrgAIERVLGGfaltllvPPEHYAAALRWVNrlhlRGRLVYERVRTGLPDPErprldp 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 636 -------DSERSAHAKEMEAL---RAKLMKV-----------------------------------------------IK 658
Cdd:COG4913 534 dslagklDFKPHPFRAWLEAElgrRFDYVCVdspeelrrhpraitragqvkgngtrhekddrrrirsryvlgfdnrakLA 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 659 EKENSLEAIKSKLDKAEDQhLVEMEETLNKLQEAEIKKEKFAEASEEAVSVQrsmqETVNKLHQKEEQFNML---SSDLE 735
Cdd:COG4913 614 ALEAELAELEEELAEAEER-LEALEAELDALQERREALQRLAEYSWDEIDVA----SAEREIAELEAELERLdasSDDLA 688
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 736 KLRENLAEMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERYVEELQLKLTKANENASFLQ 815
Cdd:COG4913 689 ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELR 768
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 816 KSIEDmTLKAEQSQQeaaekheeekkelERKLSDLEKKM----ETSHNQCQELKAGYEKATSetktkHEEILQNLRKT-L 890
Cdd:COG4913 769 ENLEE-RIDALRARL-------------NRAEEELERAMrafnREWPAETADLDADLESLPE-----YLALLDRLEEDgL 829
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 1622847186 891 LDTEDKLKGAREENSGllQELEELRKQADKAKSltylltSAKKEIELMSEELRGL 945
Cdd:COG4913 830 PEYEERFKELLNENSI--EFVADLLSKLRRAIR------EIKERIDPLNDSLKRI 876
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
952-1174 |
9.85e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 47.61 E-value: 9.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 952 LSQEGNDLKLENgsLLSKLVELEAKIALLQGDQQKLWSVNETLNLEKEKFLEEkqdAEKHYEQEHlnkevlaverEKLLK 1031
Cdd:PRK05771 36 LKEELSNERLRK--LRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEE---LIKDVEEEL----------EKIEK 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1032 EINVAQEELLKINMENDSLQASKVSMQTL------IEELQLSK--DALIAKTEKDQEERDHLADQIKKLITEN------- 1096
Cdd:PRK05771 101 EIKELEEEISELENEIKELEQEIERLEPWgnfdldLSLLLGFKyvSVFVGTVPEDKLEELKLESDVENVEYIStdkgyvy 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1097 ---FILAKDKDDI--------IQKLQSSYEELVKDQ-KALVQDIEDLTAEKKSALEKLSNLDNTCIALKVERDNALQNNR 1164
Cdd:PRK05771 181 vvvVVLKELSDEVeeelkklgFERLELEEEGTPSELiREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIEL 260
|
250
....*....|
gi 1622847186 1165 DLQLETDMLL 1174
Cdd:PRK05771 261 ERAEALSKFL 270
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1498-1949 |
9.94e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 9.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1498 QEVEELRVCTEELQSEKFVLLQEKTKSEQEVAEIIEEKELLTAEAAQLAAHIKtlKSDFAALSKSKAELQELHSCLTKI- 1576
Cdd:PTZ00121 1290 KKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAK--KAAEAAKAEAEAAADEAEAAEEKAe 1367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1577 LDDLQLNHEVTLAEKAQVMQDNQ---NLLAEKSEMMLEKDELLKEKEMLAESYFILQKEISQLAKTNShisanLLESQNE 1653
Cdd:PTZ00121 1368 AAEKKKEEAKKKADAAKKKAEEKkkaDEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADE-----AKKKAEE 1442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1654 NRTLRKDKNKLTLKIRELETLQSFTAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELN 1733
Cdd:PTZ00121 1443 AKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAK 1522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1734 KSKELLTVEN-QKMEEFRKEIETLKQAAAQKSQQLSalQEENVKLAEELGRS-RDEVTSHQKLEEERSVLNNQLLEMKKS 1811
Cdd:PTZ00121 1523 KADEAKKAEEaKKADEAKKAEEKKKADELKKAEELK--KAEEKKKAEEAKKAeEDKNMALRKAEEAKKAEEARIEEVMKL 1600
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1812 LPSNTLRESKFIKDADEEKA---SLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKSLHSVVQTLESDKVKL--- 1885
Cdd:PTZ00121 1601 YEEEKKMKAEEAKKAEEAKIkaeELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAeea 1680
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622847186 1886 ---ELKVKNLELQLKENKRQLSSSSGNTDTQADEDERAQESQQMIDFLNSVIVDLQRKNQDLKMKVE 1949
Cdd:PTZ00121 1681 kkaEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAE 1747
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
531-965 |
1.24e-04 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 47.52 E-value: 1.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 531 FGAREETHQKEIKALYTAT-----EKLS--KENESLKSKLEHANKENSD----VIALWKSKLETAIASHQQAMEELKVSF 599
Cdd:NF012221 1428 YGLRAEGHGARVSELDTYTntslyQDLSnlTAGEVIALSFDFARRAGLStnngIEVLWNGEVVFASSGDASAWQQKTLKL 1507
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 600 SKGLGTETAEFAEL-KTQIEKMRLDYQHEIENLQnQQDSERSAHAKEMEALRAKLmkviKEKENSlEAIKSKLDKAEDQH 678
Cdd:NF012221 1508 TAKAGSNRLEFKGTgHNDGLGYILDNVVATSESS-QQADAVSKHAKQDDAAQNAL----ADKERA-EADRQRLEQEKQQQ 1581
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 679 LVEMEETLNKLQEAEIKK-EKFAEASEEAVSV-QRSMQETVNKLHQKEEQFNMLSSDLEKL----RENLAEmeakfREKD 752
Cdd:NF012221 1582 LAAISGSQSQLESTDQNAlETNGQAQRDAILEeSRAVTKELTTLAQGLDALDSQATYAGESgdqwRNPFAG-----GLLD 1656
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 753 EREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMndelrlkeryVEELQLKLTKANENASFLQKSIEDMTLKAEQSQQEA 832
Cdd:NF012221 1657 RVQEQLDDAKKISGKQLADAKQRHVDNQQKVKDA----------VAKSEAGVAQGEQNQANAEQDIDDAKADAEKRKDDA 1726
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 833 AEKHEEEKKElerklsdlEKKMETSHNQCQelKAGyEKATSETKTKHEEILQNLRKTLLDTEDKLKGAREENSGLLQELE 912
Cdd:NF012221 1727 LAKQNEAQQA--------ESDANAAANDAQ--SRG-EQDASAAENKANQAQADAKGAKQDESDKPNRQGAAGSGLSGKAY 1795
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 1622847186 913 ELRkqaDKAKSLTYLLTSAKKEI------ELMSEELRGLKSEKQLLsqegNDLKLENGS 965
Cdd:NF012221 1796 SVE---GVAEPGSHINPDSPAAAdgrfseGLTEQEQEALEGATNAV----NRLQINAGS 1847
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1509-1805 |
1.35e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.36 E-value: 1.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1509 ELQSEKFVLLQEKTKSEQEVaeiieEKELLTAEAAQLAAHIKTLKSDFAALSKSKAELQELHSCLTKILDDLQLNHEVTL 1588
Cdd:TIGR02168 206 ERQAEKAERYKELKAELREL-----ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1589 AEKAQVMQDNQNLLAEKSEMMLEKDELLKEKEMLAESYFILQKEISQLAKTNSHISANLLESQNENRTLRKDKNKLTLKI 1668
Cdd:TIGR02168 281 EEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1669 RELETLQ--SFTAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKElltvenqkm 1746
Cdd:TIGR02168 361 EELEAELeeLESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLE--------- 431
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1622847186 1747 eefRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVtshQKLEEERSVLNNQL 1805
Cdd:TIGR02168 432 ---EAELKELQAELEELEEELEELQEELERLEEALEELREEL---EEAEQALDAAEREL 484
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
730-955 |
1.36e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 1.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 730 LSSDLEKLRENLAEMEAKFREKDEREEQLIKAKEKLENDIAEImkmsgdnSSQLTKMNDELRLKERYVEELQLKLTKANE 809
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAAL-------ARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 810 NASFLQKSIEDMTLKAEQSQQEAAEKHEEEKKELERKLSDLEkkmetshnqcqelkagYEKATSETKTKHEEILQNLRKT 889
Cdd:COG4942 98 ELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQ----------------YLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622847186 890 LLDTEDKLKGAREENSGLLQELEELRKQADKAKS-LTYLLTSAKKEIELMSEELRGLKSEKQLLSQE 955
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEERAALEALKAeRQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
603-812 |
1.40e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 1.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 603 LGTETAEFAELKTQIEKMRLDYQHEIENLQ---NQQDSERSAHAKEMEALRAKLMKV---IKEKENSLEAIKSKLDKAED 676
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEkelAALKKEEKALLKQLAALERRIAALarrIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 677 QhLVEMEETLNKLQEA------------EIKKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLAEM 744
Cdd:COG4942 91 E-IAELRAELEAQKEElaellralyrlgRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622847186 745 EAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERYVEELQLKLTKANENAS 812
Cdd:COG4942 170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
646-1128 |
1.48e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 1.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 646 MEALRAKLMKVIKEKENSLEAIKSKLDKAEDQHLVEMEEtlnKLQEAEIKKEKFAEASEEAVSVQRSMQETVNKLHQKEE 725
Cdd:COG4717 40 LAFIRAMLLERLEKEADELFKPQGRKPELNLKELKELEE---ELKEAEEKEEEYAELQEELEELEEELEELEAELEELRE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 726 QFNMLsSDLEKLRENLAEMEAKFREKDEREEQLIKAKEKLEndiaeimkmsgdnssqltkmndELRLKERYVEELQLKLT 805
Cdd:COG4717 117 ELEKL-EKLLQLLPLYQELEALEAELAELPERLEELEERLE----------------------ELRELEEELEELEAELA 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 806 KANENASFLQKSIEDMTLKAEQSQQEAAEKHEEEKKELERKLSDLEKKMETSHNQCQELKAGYEKATSETKTKHEEILQN 885
Cdd:COG4717 174 ELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLL 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 886 LRKTLLD---TEDKLKGAREENSGLLQ--------ELEELRKQADKAKSLTYLLTSAKKEIELMSEELRGLKSEKQLLSQ 954
Cdd:COG4717 254 IAAALLAllgLGGSLLSLILTIAGVLFlvlgllalLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPD 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 955 EGNDLKLENGSLLSKLVELEAKIALLQGDQQKLWSVNETLNLEKEKFLEEKQDAEKHYEQehlnkevlAVEREKLLKEIN 1034
Cdd:COG4717 334 LSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQ--------AEEYQELKEELE 405
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1035 VAQEELLKIN--MENDSLQASKVSMQTLIEELQLSKDALIAKTEKDQEERDHLADQIKKLitenfilakDKDDIIQKLQS 1112
Cdd:COG4717 406 ELEEQLEELLgeLEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQL---------EEDGELAELLQ 476
|
490
....*....|....*.
gi 1622847186 1113 SYEELVKDQKALVQDI 1128
Cdd:COG4717 477 ELEELKAELRELAEEW 492
|
|
| CLIP1_ZNF |
pfam16641 |
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of ... |
1980-1997 |
1.77e-04 |
|
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of the cytoplasmic linker protein CLIP1 (CLIP170). It forms a complex with the CAP-Gly domain of Dynactin.
Pssm-ID: 465212 Cd Length: 17 Bit Score: 40.14 E-value: 1.77e-04
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1394-1769 |
1.87e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 46.82 E-value: 1.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1394 LVASKCDLSLMLKEAQNAKKNLEKEHTHILQAKENLDAELNTCCSEKNILLRDSLNLQEECQKLSEEIQEMQQSLILEQE 1473
Cdd:PLN02939 30 RLAVSCRARRRGFSSQQKKKRGKNIAPKQRSSNSKLQSNTDENGQLENTSLRTVMELPQKSTSSDDDHNRASMQRDEAIA 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1474 ARAKEKESSLYENNQLHGrmVLLEQEVEELRvcteelQSEKFVLL--QEKTKSEQEVAEIIEEKELLTAEAAQLAAHIKT 1551
Cdd:PLN02939 110 AIDNEQQTNSKDGEQLSD--FQLEDLVGMIQ------NAEKNILLlnQARLQALEDLEKILTEKEALQGKINILEMRLSE 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1552 LKSDFAALSKSKAELQELHSCLTKILDDLQLNHEvtlAEKAQVMQDNQNLLAEKSEMMLEKDELLKEKEMLA------ES 1625
Cdd:PLN02939 182 TDARIKLAAQEKIHVEILEEQLEKLRNELLIRGA---TEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIevaeteER 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1626 YFILQKEISQLAKTNSHISANLLESQNEnrTLRKDKNKLTLKIRELETLQSF--TAAQTAEDAMQIMEQMT--KEKTETL 1701
Cdd:PLN02939 259 VFKLEKERSLLDASLRELESKFIVAQED--VSKLSPLQYDCWWEKVENLQDLldRATNQVEKAALVLDQNQdlRDKVDKL 336
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622847186 1702 -ASLEDTKQTnaKLQNELDTLKENNLKNVEE-LNKSKE----LLTVENQKMEEFRKEIETLKQAAAQKSQQLSA 1769
Cdd:PLN02939 337 eASLKEANVS--KFSSYKVELLQQKLKLLEErLQASDHeihsYIQLYQESIKEFQDTLSKLKEESKKRSLEHPA 408
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1106-1570 |
1.88e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 1.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1106 IIQKLQSSYEELVKDQKALVQDIEDLTAEKKSALEKLSNLDNTCIALKVERDNALQNNRDLQLETDMLLHDQEKLNASLQ 1185
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1186 AALQVKQLLRseasgLRAQLDDASKALRKAELETMQLQATNTSLTKLLEEIKARRAVTDSECIQLLHEKEtlaASERRLL 1265
Cdd:COG4717 127 LLPLYQELEA-----LEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATE---EELQDLA 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1266 AEKEELLSENRIITEKLHKCSEEAAHTEmslnEKITYLtsEKEMASQKMTKLKKHQDSLLKEKSAL-------------- 1331
Cdd:COG4717 199 EELEELQQRLAELEEELEEAQEELEELE----EELEQL--ENELEAAALEERLKEARLLLLIAAALlallglggsllsli 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1332 ETQNGVLLAERENSIKAIGDLKRQCDQESANRRIIVQENMKLLGNIDALKKELQERKNENQELVASKCDLSLMLKEAQNA 1411
Cdd:COG4717 273 LTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQEL 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1412 KKNLEKEHTHIL--QAKENLDAELNTCCSEKNILLRDSLNLQEECQKLSEEIQEMQQSLilEQEARAKEKESSLYENNQL 1489
Cdd:COG4717 353 LREAEELEEELQleELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQL--EELLGELEELLEALDEEEL 430
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1490 HGRMVLLEQEVEELRVCTEELQSEKFVLLQE--KTKSEQEVAEIIEEKELLTAEAAQLAAHIKTLKSDFAALSKSKAELQ 1567
Cdd:COG4717 431 EEELEELEEELEELEEELEELREELAELEAEleQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYR 510
|
...
gi 1622847186 1568 ELH 1570
Cdd:COG4717 511 EER 513
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1372-1906 |
2.16e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.55 E-value: 2.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1372 KLLGNIDALKKELQERKNENQelvaskcDLSLMLKEAQNAKKNLEKEHTHILQAKENLDAELNTCCSEKNILLRDSLNLQ 1451
Cdd:TIGR04523 37 QLEKKLKTIKNELKNKEKELK-------NLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKIN 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1452 EECqKLSEEIQEMQQSLILEQEARAKEKESSLYENNqlhGRMVLLEQEVEELRVCTEELQSEKFVLLQEKTKSEQEVAEI 1531
Cdd:TIGR04523 110 SEI-KNDKEQKNKLEVELNKLEKQKKENKKNIDKFL---TEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNI 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1532 IEEKELLTAEAAQLAAHIKTLKSDFAALSKSKAELQELHSCLTKILDDLQLNHEVTLAEKAQVMQDNQNLLAEKSEMMLE 1611
Cdd:TIGR04523 186 QKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKI 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1612 KDELLKEKEMLAESYFILQKEISQLAKTNSHISAnlLESQNENRTLRKDKNKLTLKIRELETLQSFTAA--QTAEDAMQI 1689
Cdd:TIGR04523 266 KKQLSEKQKELEQNNKKIKELEKQLNQLKSEISD--LNNQKEQDWNKELKSELKNQEKKLEEIQNQISQnnKIISQLNEQ 343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1690 MEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKelltvenQKMEEFRKEIETLKQAAAQKSQQLSA 1769
Cdd:TIGR04523 344 ISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLE-------SQINDLESKIQNQEKLNQQKDEQIKK 416
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1770 LQEENVKLAEELGRSRDEVTSHQK----LEEERSVLNNQLlemkKSLPSNTLRESKFIKDADEEKASLQKSISITSALLT 1845
Cdd:TIGR04523 417 LQQEKELLEKEIERLKETIIKNNSeikdLTNQDSVKELII----KNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELK 492
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622847186 1846 EKDAELEKLRNEVTVLRGENASAK----SLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSS 1906
Cdd:TIGR04523 493 SKEKELKKLNEEKKELEEKVKDLTkkisSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKE 557
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1252-1637 |
2.19e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 46.49 E-value: 2.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1252 HEKETLAASERRLLAEKEELLSENRIITE--KLHKCSEEAAhtEMSLNEKItyLTSEKEMASQKMT----------KLKK 1319
Cdd:PRK04863 277 HANERRVHLEEALELRRELYTSRRQLAAEqyRLVEMARELA--ELNEAESD--LEQDYQAASDHLNlvqtalrqqeKIER 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1320 HQDSLLKEKSALETQNGVL------LAERENSIKA----IGDLKRQCdqesAN--RRIIVQENM---------------K 1372
Cdd:PRK04863 353 YQADLEELEERLEEQNEVVeeadeqQEENEARAEAaeeeVDELKSQL----ADyqQALDVQQTRaiqyqqavqalerakQ 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1373 LLGN----IDALKKELQERKNENQELVASKCDLSLMLKEAQNAKKnlekEHTHILQAKENLDAEL--NTCCSEKNILLRD 1446
Cdd:PRK04863 429 LCGLpdltADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHS----QFEQAYQLVRKIAGEVsrSEAWDVARELLRR 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1447 SLNLQ---EECQKLSEEIQEMQQSLILEQEArakekESSLYENNQLHGRMVLLEQEVEELrvcTEELqsekfvllqektk 1523
Cdd:PRK04863 505 LREQRhlaEQLQQLRMRLSELEQRLRQQQRA-----ERLLAEFCKRLGKNLDDEDELEQL---QEEL------------- 563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1524 sEQEVAEIIEEKELLTAEAAQLAAHIKTLKSDFAALSKSKAELQELHSCLTKilddLQLNHEVTLAEKAQVMQDNQNLLA 1603
Cdd:PRK04863 564 -EARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALAR----LREQSGEEFEDSQDVTEYMQQLLE 638
|
410 420 430
....*....|....*....|....*....|....
gi 1622847186 1604 EKSEMMLEKDELLKEKEMlaesyfiLQKEISQLA 1637
Cdd:PRK04863 639 RERELTVERDELAARKQA-------LDEEIERLS 665
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
356-529 |
2.20e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 46.39 E-value: 2.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 356 ALKEKQQHIEQLLAE---RDLERAEVAKATS-----------HVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAAD 421
Cdd:COG2433 347 AYKNKFERVEKKVPPdvdRDEVKARVIRGLSieealeeliekELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLE 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 422 REKVELLNQLEEEKRKVEDLQFRVEEESitkgdlevatvSEKSRIMELEKDLALRVQEVAELRRRLEsnkpagdvdmslS 501
Cdd:COG2433 427 AEVEELEAELEEKDERIERLERELSEAR-----------SEERREIRKDREISRLDREIERLERELE------------E 483
|
170 180 190
....*....|....*....|....*....|..
gi 1622847186 502 LLQEISSLQEKLEVTRT----DHQREITSLKE 529
Cdd:COG2433 484 ERERIEELKRKLERLKElwklEHSGELVPVKV 515
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
336-595 |
2.26e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 2.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 336 LTETSSRYARKISGTTALQEALKEKQQHIEQLlAERDLERAEVAKATSHVGEIEQELALARDGHDQhVLELEAKMDQLRT 415
Cdd:COG4913 622 LEEELAEAEERLEALEAELDALQERREALQRL-AEYSWDEIDVASAEREIAELEAELERLDASSDD-LAALEEQLEELEA 699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 416 MVEAADREKVELLNQLEEEKRKVEDLQFRVEEesiTKGDLEVAtvsEKSRIMELEKDLALRVQEVAELRRRLEsnkpagd 495
Cdd:COG4913 700 ELEELEEELDELKGEIGRLEKELEQAEEELDE---LQDRLEAA---EDLARLELRALLEERFAAALGDAVERE------- 766
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 496 vdMSLSLLQEISSLQEKLEVTRTDHQREITSLKEHFGAREETHQKEIKALYTATEKLSK-ENESL---KSKLEHANKENS 571
Cdd:COG4913 767 --LRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYLALLDRlEEDGLpeyEERFKELLNENS 844
|
250 260
....*....|....*....|....*
gi 1622847186 572 DV-IALWKSKLETAIASHQQAMEEL 595
Cdd:COG4913 845 IEfVADLLSKLRRAIREIKERIDPL 869
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
536-1237 |
2.38e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 46.25 E-value: 2.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 536 ETHQKEIKALYTATEKLSKENESLKSKLEHANKENSDVIA------LWKSKLETAIAS----------HQQAMEELKVSF 599
Cdd:pfam05483 109 QENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKennatrHLCNLLKETCARsaektkkyeyEREETRQVYMDL 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 600 SKGLGTETAEFAELKTQIEKMRLDYQHEIENLQNQQDSERSAHAKEM---EALRAKLMKVIKEKENSLEAIKSKLDKAED 676
Cdd:pfam05483 189 NNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEIndkEKQVSLLLIQITEKENKMKDLTFLLEESRD 268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 677 QhlVEMEETLNKLQEAEIKK--EKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLREnlaemeakfrEKDER 754
Cdd:pfam05483 269 K--ANQLEEKTKLQDENLKEliEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTE----------EKEAQ 336
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 755 EEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERYVEELQLKLTKANENASFLQKSIEDMTLKAEQSqqeaae 834
Cdd:pfam05483 337 MEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEEL------ 410
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 835 kheeekkelerklsdleKKMETSHNQCQELKAGYEKATSETKTKHEE---ILQNLRKTLLDTEDKLKGAREENSGLLQEL 911
Cdd:pfam05483 411 -----------------KKILAEDEKLLDEKKQFEKIAEELKGKEQElifLLQAREKEIHDLEIQLTAIKTSEEHYLKEV 473
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 912 EELRKQADKAKSLTYLLTSAKKEIELMSEELRGLKSEKQL----LSQEGNDLKLENGSLLSKLVELEAKIALLQGD---- 983
Cdd:pfam05483 474 EDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLelkkHQEDIINCKKQEERMLKQIENLEEKEMNLRDElesv 553
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 984 QQKLWSVNETLNLEKEKFLEEKQDAEKHYEQEHLNKEVLAVEREKLLKEINVAQEELLKINMENDSLQASKVSMQTLIEE 1063
Cdd:pfam05483 554 REEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNA 633
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1064 LQLSKDALIAKTEKDQEERDHLADQIKKLITENFILAKDKDDIIQKLQSSYEELVKDQKALVQDIEDLTAEKKSALEKLS 1143
Cdd:pfam05483 634 YEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHK 713
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1144 NLDNTCIAlkvERDNALQnnrdlqletdmLLHDQEKLNASLQAALQVkqllrsEASGLRAQLDDASKALRKAELETMQLQ 1223
Cdd:pfam05483 714 HQYDKIIE---ERDSELG-----------LYKNKEQEQSSAKAALEI------ELSNIKAELLSLKKQLEIEKEEKEKLK 773
|
730
....*....|....
gi 1622847186 1224 ATNTSLTKLLEEIK 1237
Cdd:pfam05483 774 MEAKENTAILKDKK 787
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
849-1418 |
2.97e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.98 E-value: 2.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 849 DLEKKMETSHNQCQELKAGYEKATSETKTKHEEILQNLRKTLLDTEDKLKGAREEnsglLQELEELRKQADKAKSLTY-- 926
Cdd:pfam12128 269 SDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSE----LEALEDQHGAFLDADIETAaa 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 927 ---LLTSAKKEIELMSEELRGLKSEKQLLSQEGNDLKLENGSllsklvELEAKIALLQGDQQKLwsvnetlnleKEKFLE 1003
Cdd:pfam12128 345 dqeQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKE------QNNRDIAGIKDKLAKI----------REARDR 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1004 EKQDAEKHYEQEhlnKEVLAVEREKLLKEINVaQEELLKINMENDSLQASKVsmqTLIEELQLSKDALIAKTEKDQEERD 1083
Cdd:pfam12128 409 QLAVAEDDLQAL---ESELREQLEAGKLEFNE-EEYRLKSRLGELKLRLNQA---TATPELLLQLENFDERIERAREEQE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1084 HLADQIKKLITENFILAKDKDDIIQKLQSSYEELVKDQKALVQDIEDLTAEKKSALEKLSN------------------- 1144
Cdd:pfam12128 482 AANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLLHFLRKeapdweqsigkvispellh 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1145 ---LDNTCIALKVERDN----------ALQNNRDLQLEtDMLLHDQEKLNASLQAALQVKQLLRSEASGLRAQLDDASK- 1210
Cdd:pfam12128 562 rtdLDPEVWDGSVGGELnlygvkldlkRIDVPEWAASE-EELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASRe 640
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1211 ------ALRKAELETMQLQATNTSLT-KLLEEIKARRAVTDSECIQLLHEKETLAASERRLLAEKEELLSENRiiTEKLH 1283
Cdd:pfam12128 641 etfartALKNARLDLRRLFDEKQSEKdKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREAR--TEKQA 718
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1284 KCSEEAAHTEMSLNEKITYLTSEKEMASQKMTKLKKHQDSLLKEKSALETQNGVLLAERENSIKAIGDLKRqcdQESANR 1363
Cdd:pfam12128 719 YWQVVEGALDAQLALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAV---RRQEVL 795
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 1622847186 1364 RIIVQENMKLLGNIDALKKELQERKNENQELvasKCDLSLMLKEAQNAKKNLEKE 1418
Cdd:pfam12128 796 RYFDWYQETWLQRRPRLATQLSNIERAISEL---QQQLARLIADTKLRRAKLEME 847
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1702-1903 |
3.06e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 3.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1702 ASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEEL 1781
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1782 GRSRDEVTSHQKLEEERSVLNNQLLEMKKSLPSNTLRESKFIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVL 1861
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1622847186 1862 RGENASAKslhsvvQTLESDKVKLELKVKNLELQLKENKRQL 1903
Cdd:COG4942 180 LAELEEER------AALEALKAERQKLLARLEKELAELAAEL 215
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
555-1124 |
3.12e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 45.87 E-value: 3.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 555 ENESLKSKLEHANKENSDVIALWKSKLETAIASHQQAMEELKvsfsKGLGTETAEFAELKTQIEKMRLDYQHEIE----- 629
Cdd:pfam05483 71 ENSEGLSRLYSKLYKEAEKIKKWKVSIEAELKQKENKLQENR----KIIEAQRKAIQELQFENEKVSLKLEEEIQenkdl 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 630 -----------NLQNQQDSERSAHAKEMEALRAKLMKVIKEKENSLEAIKSKLDKAEDQHLVEMEETLNKLQEAEIKKEK 698
Cdd:pfam05483 147 ikennatrhlcNLLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQH 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 699 FAEASEEAVS-VQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLAEMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSG 777
Cdd:pfam05483 227 LEEEYKKEINdKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQ 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 778 DNSSQLTKMNDELRLKERYVEEL-------QLKLTKANENASFLQKSIEDMTLKAEQSQQEAAEKHEEEKKELERKLSDL 850
Cdd:pfam05483 307 RSMSTQKALEEDLQIATKTICQLteekeaqMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMEL 386
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 851 EKKmETSHNQCQELKAGYEKATSETKTKHEEilqnlRKTLLDTEDKLKGAREENSGLLQELeelrkqadkakslTYLLTS 930
Cdd:pfam05483 387 QKK-SSELEEMTKFKNNKEVELEELKKILAE-----DEKLLDEKKQFEKIAEELKGKEQEL-------------IFLLQA 447
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 931 AKKEIELMSEELRGLKSEKQLLSQEGNDLKLENGSLLSKLVELEAKIALLQGDQQKLWSVNETLNLEKEKFLEEKQDAEK 1010
Cdd:pfam05483 448 REKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKK 527
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1011 hyeqehlnkevlavEREKLLKEINVAQEELLKINMENDSLQaskvsmqtliEELQLSKDALIAKTEKDQEERDHLADQIK 1090
Cdd:pfam05483 528 --------------QEERMLKQIENLEEKEMNLRDELESVR----------EEFIQKGDEVKCKLDKSEENARSIEYEVL 583
|
570 580 590
....*....|....*....|....*....|....*..
gi 1622847186 1091 KLITENFILAKDKDDIIQKLQSS---YEELVKDQKAL 1124
Cdd:pfam05483 584 KKEKQMKILENKCNNLKKQIENKnknIEELHQENKAL 620
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
900-1239 |
3.35e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 46.05 E-value: 3.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 900 AREENSGLLQELEELRKQADKAKSL-TYLLTSAKKEIELMSEELRGLKSEKQLLSQEGNDLKLENGSLLSKLVELEAKIa 978
Cdd:PLN02939 37 ARRRGFSSQQKKKRGKNIAPKQRSSnSKLQSNTDENGQLENTSLRTVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQ- 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 979 llqgdQQKLWSVNETLNLEKEKFLEEKQDAEKH---------YEQEHLNKevLAVEREKLLKEINVAQEELLKINMENDS 1049
Cdd:PLN02939 116 -----QTNSKDGEQLSDFQLEDLVGMIQNAEKNilllnqarlQALEDLEK--ILTEKEALQGKINILEMRLSETDARIKL 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1050 LQASKVSMQTLIEELQLSKDALIAKTEKDQEERDHLADQIKKLITENFILakdKDDI------IQKLQSSYEELVKDQK- 1122
Cdd:PLN02939 189 AAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLL---KDDIqflkaeLIEVAETEERVFKLEKe 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1123 -----ALVQDIEDLTAEKKSALEKLSNLDNTCIALKVERDNALQNNRDLQLETDMLLHDQ--------EKLNASLQAA-- 1187
Cdd:PLN02939 266 rslldASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQnqdlrdkvDKLEASLKEAnv 345
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 1622847186 1188 ----LQVKQLLRSEASGLRAQLDDAS-KALRKAELETMQLQATNTSLTKLLEEIKAR 1239
Cdd:PLN02939 346 skfsSYKVELLQQKLKLLEERLQASDhEIHSYIQLYQESIKEFQDTLSKLKEESKKR 402
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
657-1046 |
3.44e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.83 E-value: 3.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 657 IKEKENSLEAIKSKLDKAEDqhlvEMEETLNKLQEAEikkEKFAEASEEAVSVQRSMQETVNKLHQKEEQFnmlsSDLEK 736
Cdd:TIGR02169 683 LEGLKRELSSLQSELRRIEN----RLDELSQELSDAS---RKIGEIEKEIEQLEQEEEKLKERLEELEEDL----SSLEQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 737 LRENL-AEMEAKFREKDEREEQLIKAKEKLENDIAEImkmsgdNSSQLTKMNDELRLKERYVEELQLKLtkanenaSFLQ 815
Cdd:TIGR02169 752 EIENVkSELKELEARIEELEEDLHKLEEALNDLEARL------SHSRIPEIQAELSKLEEEVSRIEARL-------REIE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 816 KSIEDMTLKAEQSQQEAAEKHEEEKkelerklsDLEKKMETSHNQCQELKAGYEKATSETKtKHEEILQNLRKTLLDTED 895
Cdd:TIGR02169 819 QKLNRLTLEKEYLEKEIQELQEQRI--------DLKEQIKSIEKEIENLNGKKEELEEELE-ELEAALRDLESRLGDLKK 889
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 896 KLKGAREENSGLLQELEELRKQADKAKSLTYLLTSAkkeIELMSEELRGL-KSEKQLLSQEGNDLKLEngsllsklvELE 974
Cdd:TIGR02169 890 ERDELEAQLRELERKIEELEAQIEKKRKRLSELKAK---LEALEEELSEIeDPKGEDEEIPEEELSLE---------DVQ 957
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622847186 975 AKIALLQGDQQKLWSVNetlnlekEKFLEEKQDAEKHYEQEHLNKEVLAVEREKLLKEINVAQEELLKINME 1046
Cdd:TIGR02169 958 AELQRVEEEIRALEPVN-------MLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFME 1022
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1262-1637 |
3.55e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 45.71 E-value: 3.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1262 RRLLAEKEELLSENRIITEklhkcsEEAAHTEMS-----LNEKITYLTSEKEMAS----------QKMTKLKKHQDSLLK 1326
Cdd:COG3096 285 ERALELRRELFGARRQLAE------EQYRLVEMAreleeLSARESDLEQDYQAASdhlnlvqtalRQQEKIERYQEDLEE 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1327 EKSALETQNGVL------LAERE----------NSIKA-IGDLKRQCDqESANRRIIVQENMKLLGN-----------ID 1378
Cdd:COG3096 359 LTERLEEQEEVVeeaaeqLAEAEarleaaeeevDSLKSqLADYQQALD-VQQTRAIQYQQAVQALEKaralcglpdltPE 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1379 ALKKELQERKNENQELVASKCDLSLMLKEAQNAKKnlekEHTHILQAKENLDAEL--NTCCSEKNILLRDSLNLQ---EE 1453
Cdd:COG3096 438 NAEDYLAAFRAKEQQATEEVLELEQKLSVADAARR----QFEKAYELVCKIAGEVerSQAWQTARELLRRYRSQQalaQR 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1454 CQKLSEEIQEMQQSLILEQEARAKEKESSLYENNQLHGRMvLLEQEVEELRVCTEELqsekfvllqektksEQEVAEIIE 1533
Cdd:COG3096 514 LQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAE-ELEELLAELEAQLEEL--------------EEQAAEAVE 578
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1534 EKELLTAEAAQLAAHIKTLKSDFAALSKSKAELQELHSCLTKILDDLQlnhevtlaekaQVMQDNQNLLAEKSEMMLEKD 1613
Cdd:COG3096 579 QRSELRQQLEQLRARIKELAARAPAWLAAQDALERLREQSGEALADSQ-----------EVTAAMQQLLEREREATVERD 647
|
410 420
....*....|....*....|....
gi 1622847186 1614 ELLKEKEMlaesyfiLQKEISQLA 1637
Cdd:COG3096 648 ELAARKQA-------LESQIERLS 664
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1471-1872 |
3.81e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 3.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1471 EQEARAKEKESSLYENNQLHGRMVLLEQEVEELRVCTEELQSEKFVLLQEKTKSE--QEVAEIIEEKELLTAEAAQLAAH 1548
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPlyQELEALEAELAELPERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1549 IKTLKSDFAALSKSKAELQELHSCLTKILDDLQLNHEVTLAEKAQ----VMQDNQNLLAEKSEMMLEKDELLKEKEMLAE 1624
Cdd:COG4717 155 LEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEeleeLQQRLAELEEELEEAQEELEELEEELEQLEN 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1625 SYFILQ-----KEISQLAKTNSHISANLLESQNENRTLRKDKNKLTLKIRELETLQSFTAAQTAEDAMQIMEQMTKEKTE 1699
Cdd:COG4717 235 ELEAAAleerlKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALE 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1700 TLASLEdtkqtnakLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQlSALQEENVKLAE 1779
Cdd:COG4717 315 ELEEEE--------LEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIA-ALLAEAGVEDEE 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1780 ELGRSRDEVTSHQKLEEERSVLNNQLLEMKKSLPSNTLRESKfiKDADEEKASLQKSISITSALLTEKDAELEKLRNEVT 1859
Cdd:COG4717 386 ELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDE--EELEEELEELEEELEELEEELEELREELAELEAELE 463
|
410
....*....|...
gi 1622847186 1860 VLRGENASAKSLH 1872
Cdd:COG4717 464 QLEEDGELAELLQ 476
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1036-1270 |
4.04e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 4.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1036 AQEELLKINMENDSLQASKVSMQTLIEELQLSKDALIAKTEKDQEERDHLADQIKKLITEnfilAKDKDDIIQKLQSSYE 1115
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQE----LAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1116 ELVKDQKALVQDIEDLTAekksALEKLSNLDNtcIALKVERDNALQNNRDLQLETDMLLHDQEKLNAsLQAALQVKQLLR 1195
Cdd:COG4942 94 ELRAELEAQKEELAELLR----ALYRLGRQPP--LALLLSPEDFLDAVRRLQYLKYLAPARREQAEE-LRADLAELAALR 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622847186 1196 SEASGLRAQLDDASKALRKAELEtmqLQATNTSLTKLLEEIKARRAVTDSECIQLLHEKETLAASERRLLAEKEE 1270
Cdd:COG4942 167 AELEAERAELEALLAELEEERAA---LEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
618-804 |
4.13e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 45.23 E-value: 4.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 618 EKMRLDYQHEIENlqnqqDSERSAHAKEMEALRAKlmkvikekENSLEAIKSKL----DKAEDQHLVEMEETLnklqEAE 693
Cdd:COG2433 319 EKLHLAREYGYDN-----DHERDALAAALKAYDAY--------KNKFERVEKKVppdvDRDEVKARVIRGLSI----EEA 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 694 IKKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLAEMEAKFREKDER----EEQLIKAKEKLENDI 769
Cdd:COG2433 382 LEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERierlERELSEARSEERREI 461
|
170 180 190
....*....|....*....|....*....|....*...
gi 1622847186 770 ---AEIMKMSGDNsSQLTKmndELRLKERYVEELQLKL 804
Cdd:COG2433 462 rkdREISRLDREI-ERLER---ELEEERERIEELKRKL 495
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
365-774 |
5.05e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 5.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 365 EQLLAERDLERAEVAKATSHVGEIEQELALARdghdQHVLELEAKMDQLRTMVEAAD--REKVELLNQLEEEKRKVEDLQ 442
Cdd:COG4717 77 EEELKEAEEKEEEYAELQEELEELEEELEELE----AELEELREELEKLEKLLQLLPlyQELEALEAELAELPERLEELE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 443 FRVEEesitkgdlevatvseksrIMELEKDLALRVQEVAELRRRLESNKpagdVDMSLSLLQEISSLQEKLEVTRtdhqr 522
Cdd:COG4717 153 ERLEE------------------LRELEEELEELEAELAELQEELEELL----EQLSLATEEELQDLAEELEELQ----- 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 523 eitslkehfgAREETHQKEIKALYTATEKLSKENESLKSKLEHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKG 602
Cdd:COG4717 206 ----------QRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTI 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 603 LGTETAE---FAELKTQIEKMRLDYQHEIENLQNQQDSERSAHAKEMEALRAKLMKVIKEKENSLEAIKSKLDKAEDQHL 679
Cdd:COG4717 276 AGVLFLVlglLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLRE 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 680 VEMEETLNKLQEAEIKKEKF--------AEASEEAVSVQRSMQETVNKLHQKEEQFN---------MLSSDLEKLRENLA 742
Cdd:COG4717 356 AEELEEELQLEELEQEIAALlaeagvedEEELRAALEQAEEYQELKEELEELEEQLEellgeleelLEALDEEELEEELE 435
|
410 420 430
....*....|....*....|....*....|..
gi 1622847186 743 EMEAKFREKDEREEQLIKAKEKLENDIAEIMK 774
Cdd:COG4717 436 ELEEELEELEEELEELREELAELEAELEQLEE 467
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
332-720 |
5.51e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 5.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 332 RTGLLTETSSRYARKISGTTALQEA---LKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELAlardghdqhvlELEA 408
Cdd:TIGR02169 690 LSSLQSELRRIENRLDELSQELSDAsrkIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIE-----------NVKS 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 409 KMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSekSRIMELEKDLALRVQEVAELRrrle 488
Cdd:TIGR02169 759 ELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIE--ARLREIEQKLNRLTLEKEYLE---- 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 489 snkpagdvdmslSLLQEISSLQEKLEVTRTDHQREITSL---KEHFGAREETHQKEIKALYTATEKLSKENESLKSKLEH 565
Cdd:TIGR02169 833 ------------KEIQELQEQRIDLKEQIKSIEKEIENLngkKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRE 900
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 566 ANKEnsdvialwKSKLETAIASHQQAMEELKVSFSkglgtetAEFAELKtQIEKMRLDYQHEIENLQNQQD--SERSAHA 643
Cdd:TIGR02169 901 LERK--------IEELEAQIEKKRKRLSELKAKLE-------ALEEELS-EIEDPKGEDEEIPEEELSLEDvqAELQRVE 964
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 644 KEMEALRAKLMKVIKEKENSLEA---IKSKLDK--AEDQHLVEMEETLNKLqeaeiKKEKFAEASEeavSVQRSMQETVN 718
Cdd:TIGR02169 965 EEIRALEPVNMLAIQEYEEVLKRldeLKEKRAKleEERKAILERIEEYEKK-----KREVFMEAFE---AINENFNEIFA 1036
|
..
gi 1622847186 719 KL 720
Cdd:TIGR02169 1037 EL 1038
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1596-1942 |
5.62e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.01 E-value: 5.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1596 QDNQNLLAEKSEMMLEKDELLKEKEMLaESYFILQKEISQLAKTNSHISanllESQNENRTLRKDKNKLTLKIRELE--- 1672
Cdd:COG3206 64 QSSDVLLSGLSSLSASDSPLETQIEIL-KSRPVLERVVDKLNLDEDPLG----EEASREAAIERLRKNLTVEPVKGSnvi 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1673 --TLQSFTAAQTAEDAMQIMEQMTKEKTEtlASLEDTKQTNAKLQNELDTLKennlknveelnksKELLTVEnQKMEEFR 1750
Cdd:COG3206 139 eiSYTSPDPELAAAVANALAEAYLEQNLE--LRREEARKALEFLEEQLPELR-------------KELEEAE-AALEEFR 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1751 KE--IETLKQAAAQKSQQLSALQEENVKLAEELgrsrdevtshQKLEEERSVLNNQLLEMKKSLPSntLRESKFIKDADE 1828
Cdd:COG3206 203 QKngLVDLSEEAKLLLQQLSELESQLAEARAEL----------AEAEARLAALRAQLGSGPDALPE--LLQSPVIQQLRA 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1829 EKASLQKSISITSALLTEKDAELEKLRNEVTVLRGEnaSAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSG 1908
Cdd:COG3206 271 QLAELEAELAELSARYTPNHPDVIALRAQIAALRAQ--LQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPE 348
|
330 340 350
....*....|....*....|....*....|....
gi 1622847186 1909 NTDTQADEDERAQESQQMIDFLnsvivdLQRKNQ 1942
Cdd:COG3206 349 LEAELRRLEREVEVARELYESL------LQRLEE 376
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1304-1568 |
5.97e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 5.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1304 TSEKEMASQKMTKLKKHQDSLLKEKSALETQNGVLLAERENSIKAIGDLKRQCDQESANRRIIVQENMKLLGNIDALKKE 1383
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1384 LQERKNENQELVASkcdlslMLKEAQNAKKNLekehthILQAKENLDAelntccseknilLRDSLNLQEECQKLSEEIQE 1463
Cdd:COG4942 99 LEAQKEELAELLRA------LYRLGRQPPLAL------LLSPEDFLDA------------VRRLQYLKYLAPARREQAEE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1464 MQQSLileQEARAKEKEsslyennqlhgrmvlLEQEVEELRVCTEELQSEKFVLLQEKTKSEQEVAEIIEEKELLTAEAA 1543
Cdd:COG4942 155 LRADL---AELAALRAE---------------LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELA 216
|
250 260
....*....|....*....|....*
gi 1622847186 1544 QLAAHIKTLKSDFAALSKSKAELQE 1568
Cdd:COG4942 217 ELQQEAEELEALIARLEAEAAAAAE 241
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
352-545 |
6.21e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 6.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 352 ALQEALKEKQQHIEqllAERDLERAEVAKATSHVGEIEQELALAR---DGHDQHVLELEAKMDQLRTMVEAADREKVELL 428
Cdd:COG4913 253 LLEPIRELAERYAA---ARERLAELEYLRAALRLWFAQRRLELLEaelEELRAELARLEAELERLEARLDALREELDELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 429 NQLEEEK-RKVEDLqfrveEESITKGDLEVATVSEKS-RIMELEKDLALRV----QEVAELRRRLEsnkpagdvdmslSL 502
Cdd:COG4913 330 AQIRGNGgDRLEQL-----EREIERLERELEERERRRaRLEALLAALGLPLpasaEEFAALRAEAA------------AL 392
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1622847186 503 LQEISSLQEKLEVTRTDHQREITSLKEhfgaREETHQKEIKAL 545
Cdd:COG4913 393 LEALEEELEALEEALAEAEAALRDLRR----ELRELEAEIASL 431
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
978-1668 |
7.01e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.67 E-value: 7.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 978 ALLQGDQQKLWSVNETLNLEK-EKFLEEKQDAEKHYEQEHLNKEVLAVEREKLLKEINVAQEELLKINMENDSLQaskvs 1056
Cdd:PRK03918 139 AILESDESREKVVRQILGLDDyENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEIS----- 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1057 mqtlIEELQLSKDalIAKTEKDQEERDHLADQIKKLITENFILAKDKDDI---IQKLQSSYEELVKDQKALVQDIEDLTA 1133
Cdd:PRK03918 214 ----SELPELREE--LEKLEKEVKELEELKEEIEELEKELESLEGSKRKLeekIRELEERIEELKKEIEELEEKVKELKE 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1134 EKKSALEKlsnldntcIALKVERDNALQNNRDLQLEtdmllhdqeklnaslqaalqvKQLLRSEASGLRAQLDDASKALR 1213
Cdd:PRK03918 288 LKEKAEEY--------IKLSEFYEEYLDELREIEKR---------------------LSRLEEEINGIEERIKELEEKEE 338
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1214 KAEletmqlqatntSLTKLLEEIKARRAVtdseciqlLHEKETLAASERRLLAEKEELLSENRIIT-EKLHKCSEEAAHT 1292
Cdd:PRK03918 339 RLE-----------ELKKKLKELEKRLEE--------LEERHELYEEAKAKKEELERLKKRLTGLTpEKLEKELEELEKA 399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1293 EMSLNEKITYLTSEKEMASQKMTKLKKHQDSLLKEKSAL--------ETQNGVLLAERENSIKAI-GDLKRQCDQESANR 1363
Cdd:PRK03918 400 KEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCpvcgreltEEHRKELLEEYTAELKRIeKELKEIEEKERKLR 479
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1364 RIIVQENMKLLGN--IDALKKELQERKNENQEL-VASKCDLSLMLKEAQNAKKNLEKEHTHILQAKENLDaELNTCCSEK 1440
Cdd:PRK03918 480 KELRELEKVLKKEseLIKLKELAEQLKELEEKLkKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELE-KLEELKKKL 558
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1441 NILLRDSLNLQEECQKLSEEIQEMQQSLILEQEARAKEKESSLYENNQLHGRMVLLEQEVEELRVCTEELqSEKFVLLQE 1520
Cdd:PRK03918 559 AELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEEL-DKAFEELAE 637
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1521 KTKSEQEVAEIIEEKELLTAEA--AQLAAHIKTLKSDFAALSKSKAELQELHSCLTKILDDLQLNHEVTLAEKAQVmqdn 1598
Cdd:PRK03918 638 TEKRLEELRKELEELEKKYSEEeyEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKEL---- 713
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622847186 1599 qnllaEKSEMMLEKDELLKEK-----EMLAESYFilqKEISQLAktnSHISANLLESQNENRTLRKDKNKLTLKI 1668
Cdd:PRK03918 714 -----EKLEKALERVEELREKvkkykALLKERAL---SKVGEIA---SEIFEELTEGKYSGVRVKAEENKVKLFV 777
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
627-830 |
7.47e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 7.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 627 EIENLQNQQDSERSAHAKEMEALRAKLmKVIKEKENSLEAIKSKLDKAEDQhLVEMEETLNKLQEAEIKKEKFAEAseea 706
Cdd:COG4717 54 EADELFKPQGRKPELNLKELKELEEEL-KEAEEKEEEYAELQEELEELEEE-LEELEAELEELREELEKLEKLLQL---- 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 707 vsvqrsmQETVNKLHQKEEQFNMLSSDLEKLRENLAEMEAKFREKDEREEQLIKAKEKLEndiAEIMKMSGDNSSQLTKM 786
Cdd:COG4717 128 -------LPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELE---ELLEQLSLATEEELQDL 197
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1622847186 787 NDELRLKERYVEELQLKLTKANENASFLQKSIEDMTLKAEQSQQ 830
Cdd:COG4717 198 AEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAAL 241
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1517-1978 |
8.51e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.65 E-value: 8.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1517 LLQEKTKSEQEVAEIIEEKElltaeAAQLAAHIKTLKSDFAALSKSKAELQELHSCLTKILDDLQLnhevTLAEKAQVMQ 1596
Cdd:PRK02224 181 VLSDQRGSLDQLKAQIEEKE-----EKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADE----VLEEHEERRE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1597 DNQNLLAEKSEMMLEKDELLKEKEMLAESYFILQKEISQLAKTNSHISANLLESQNENRTLRKDKNKLTLKIRELEtlqs 1676
Cdd:PRK02224 252 ELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELR---- 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1677 ftaaQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKEnnlknveELNKSKELLTVENQKMEEFRKEIETL 1756
Cdd:PRK02224 328 ----DRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELES-------ELEEAREAVEDRREEIEELEEEIEEL 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1757 KQAAAQKSQQLSALQEENVKLAEELGRSRDEVTSHQ-KLEEERSVL--NNQLLEMKKSlPS--NTLRESKF---IKDADE 1828
Cdd:PRK02224 397 RERFGDAPVDLGNAEDFLEELREERDELREREAELEaTLRTARERVeeAEALLEAGKC-PEcgQPVEGSPHvetIEEDRE 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1829 EKASLqksisitsalltekDAELEKLRNEVTVLRGENASAKSLHSVVQTLESDKVKLELKVKNLELQ---LKENKRQLSS 1905
Cdd:PRK02224 476 RVEEL--------------EAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERretIEEKRERAEE 541
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622847186 1906 S---SGNTDTQADE-DERAQESQQMIDFLNSVIVDLQRKNQDLKMKVEmmSEAALNGNGDDLNNYDSDDQEKQSKKK 1978
Cdd:PRK02224 542 LrerAAELEAEAEEkREAAAEAEEEAEEAREEVAELNSKLAELKERIE--SLERIRTLLAAIADAEDEIERLREKRE 616
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1497-1649 |
1.00e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 1.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1497 EQEVEELRVCTEELQSEKFVLLQEKTKSEQEVAEIIEEKELLTAEAAQL-AAHIKTLKSDFAALSKSKAELQELHSCLTK 1575
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEA 366
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622847186 1576 ILDDLQLNHEVTLAE----KAQVMQDNQNLLAEKSEMMLEKDELLKEKEMLAESYFILQKEISQLAKTNSHISANLLE 1649
Cdd:COG4913 367 LLAALGLPLPASAEEfaalRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLA 444
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
657-899 |
1.03e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 657 IKEKENSLEAIKSKLDKAEDQhlvemeetLNKLQEAEikkekfAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEK 736
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKE--------LAALKKEE------KALLKQLAALERRIAALARRIRALEQELAALEAELAE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 737 LRENLAEMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERY----VEELQLKLTKANENAS 812
Cdd:COG4942 88 LEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPArreqAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 813 FLQKSIEDMTlKAEQSQQEAAEKHEEEKKELERKLSDLEKKMETSHNQCQELKAGYEKATSETKTKHEEILQNLRKTLLD 892
Cdd:COG4942 168 ELEAERAELE-ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
....*..
gi 1622847186 893 TEDKLKG 899
Cdd:COG4942 247 GFAALKG 253
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1087-1828 |
1.08e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.19 E-value: 1.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1087 DQIKKLITENFILAKDKDDIIQKLQSSYEELVKDQKALVQDIEDltaeKKSALEKLSNLDNTCIALKVERDNALQNNRDL 1166
Cdd:TIGR00618 176 DQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHE----RKQVLEKELKHLREALQQTQQSHAYLTQKREA 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1167 QLETDMLlhdqEKLNASLQAALQVKQLLRSEASGLRAQLDDASKALRKAELetmqlQATNTSLTKLLEEIKARRAVTDSE 1246
Cdd:TIGR00618 252 QEEQLKK----QQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAH-----IKAVTQIEQQAQRIHTELQSKMRS 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1247 CIQLLHEKETLAASE------RRLLAEKEELLSENRIITEKlHKCSEEAAHTEMSLNEKITYLTSEKEMASQKMTKLKKH 1320
Cdd:TIGR00618 323 RAKLLMKRAAHVKQQssieeqRRLLQTLHSQEIHIRDAHEV-ATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKE 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1321 QDSLLKEKSALETQNGVLLAERENSIKAIGDLKRQcDQESANRRIIVQENMKLLGNIDALKKELQERKNENQELVASKCD 1400
Cdd:TIGR00618 402 LDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQ-QRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQ 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1401 LSLMLKEAQnakknleKEHTHILQAKENLDAELNTCCSEKNILLRDSLN---LQEECQKLSEEIQEMQQSL--------- 1468
Cdd:TIGR00618 481 IHLQETRKK-------AVVLARLLELQEEPCPLCGSCIHPNPARQDIDNpgpLTRRMQRGEQTYAQLETSEedvyhqlts 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1469 ILEQEARAKEKESSLYENNQ-LHGRMVLLEQEVEELRVCTEELQSEkfvlLQEKTKSEQEVAEIIEEKELLTAEAAQLAA 1547
Cdd:TIGR00618 554 ERKQRASLKEQMQEIQQSFSiLTQCDNRSKEDIPNLQNITVRLQDL----TEKLSEAEDMLACEQHALLRKLQPEQDLQD 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1548 HIKTLKSDFAALSKSKAELQELHSCLTKilDDLQLNHEVTLAEKAQVMQDNQNLLaekSEMMLEKDELLKEKEMLAESYF 1627
Cdd:TIGR00618 630 VRLHLQQCSQELALKLTALHALQLTLTQ--ERVREHALSIRVLPKELLASRQLAL---QKMQSEKEQLTYWKEMLAQCQT 704
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1628 ILQKEISQLAKTNSHISANLLESQNENRTLRKDKNKLTLKIRELETLQSFTAAQTAEDAMQIMEQMTKEkTETLASLEDT 1707
Cdd:TIGR00618 705 LLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAA-LQTGAELSHL 783
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1708 KQTNAKLQNELDTLkennlknveeLNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDE 1787
Cdd:TIGR00618 784 AAEIQFFNRLREED----------THLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLK 853
|
730 740 750 760
....*....|....*....|....*....|....*....|....*.
gi 1622847186 1788 VTSHQKLEEERSVLNNQLLEMKKSLP-----SNTLRESKFIKDADE 1828
Cdd:TIGR00618 854 YEECSKQLAQLTQEQAKIIQLSDKLNginqiKIQFDGDALIKFLHE 899
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
718-1117 |
1.09e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 43.96 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 718 NKLHQKEEQFNMLSSDLEKLRENLAEMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERyv 797
Cdd:pfam05557 16 NEKKQMELEHKRARIELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNRLKKKYLEALNKKLN-- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 798 eELQLKLTKANENASFLQKSIEDMTLKAEQSQQeaaekheeekkelerKLSDLEKKMETSHNQCQELKAGYEKAtsetkT 877
Cdd:pfam05557 94 -EKESQLADAREVISCLKNELSELRRQIQRAEL---------------ELQSTNSELEELQERLDLLKAKASEA-----E 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 878 KHEEILQNLRKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKSLTYLLtSAKKEIELMSEELRGLKSEKQLLSQEGN 957
Cdd:pfam05557 153 QLRQNLEKQQSSLAEAEQRIKELEFEIQSQEQDSEIVKNSKSELARIPELE-KELERLREHNKHLNENIENKLLLKEEVE 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 958 DLKlengSLLSKLVELEAKIALLQgdqqklwsvnetlnLEKEKFLEEKQDAEKHYEQEHLNkevlAVEREKLLKEINVAQ 1037
Cdd:pfam05557 232 DLK----RKLEREEKYREEAATLE--------------LEKEKLEQELQSWVKLAQDTGLN----LRSPEDLSRRIEQLQ 289
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1038 EELLKINMENDSLQASKVSMQTLIEELQLSKDALIAKTEKDQEERDHLADQIKKLITENFILAKDKDDIIQKLQSSYEEL 1117
Cdd:pfam05557 290 QREIVLKEENSSLTSSARQLEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILESYDKEL 369
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1160-1527 |
1.11e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 44.12 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1160 LQNNRDLQLETDmllHDQEKLNASLQAALQVKQLLRSEAS---GLRAQLDDASKALRKAELETMQ--LQATNTSLTKLLE 1234
Cdd:PLN02939 59 RSSNSKLQSNTD---ENGQLENTSLRTVMELPQKSTSSDDdhnRASMQRDEAIAAIDNEQQTNSKdgEQLSDFQLEDLVG 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1235 EIKarravtDSECIQLLHEKETLAASER--RLLAEKEELLSENRIITEKLhkcSEEAAHTEMSLNEKItyltsEKEMASQ 1312
Cdd:PLN02939 136 MIQ------NAEKNILLLNQARLQALEDleKILTEKEALQGKINILEMRL---SETDARIKLAAQEKI-----HVEILEE 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1313 KMTKLKKHqdslLKEKSALETQNGVLLAERENSIKaigdlkrqcdqesanrriivQENMKLLGNIDALKKELQERKNENQ 1392
Cdd:PLN02939 202 QLEKLRNE----LLIRGATEGLCVHSLSKELDVLK--------------------EENMLLKDDIQFLKAELIEVAETEE 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1393 ELVAskcdlslmlkeaqnakknLEKEHTHILQAKENLDAELNTccSEKNILLRDSlnLQEECqkLSEEIQEMQqsLILEQ 1472
Cdd:PLN02939 258 RVFK------------------LEKERSLLDASLRELESKFIV--AQEDVSKLSP--LQYDC--WWEKVENLQ--DLLDR 311
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1622847186 1473 EARAKEKESSLYENNQ-LHGRMVLLEQEVEELRVctEELQSEKFVLLQEKTKSEQE 1527
Cdd:PLN02939 312 ATNQVEKAALVLDQNQdLRDKVDKLEASLKEANV--SKFSSYKVELLQQKLKLLEE 365
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1233-1978 |
1.11e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 44.27 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1233 LEEIKARRAVTDSECIQLLHEKETLAASERRLLaEKEELLSENRIITEKLHKCSEEAAHtEMSLNEKITYLTSEKEMA-- 1310
Cdd:TIGR00606 247 LDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKK-QMEKDNSELELKMEKVFQGTDEQLN-DLYHNHQRTVREKERELVdc 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1311 SQKMTKLKKHQDSLLKEKSALETQNGVLlaerensikaigDLKRQCDQESANRRIIVQENMKLLGNIDALKKE-LQERKN 1389
Cdd:TIGR00606 325 QRELEKLNKERRLLNQEKTELLVEQGRL------------QLQADRHQEHIRARDSLIQSLATRLELDGFERGpFSERQI 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1390 ENqelvASKCDLSLMLKEAQNAKKNLEKEHTHILQAKENLDAELNTCCSEKNILLRDSLNLQEECQKLSEEIQEMQQS-- 1467
Cdd:TIGR00606 393 KN----FHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLeg 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1468 -----LILEQEARAKEKESSLYENNQLhgrmvlleqeVEELRVCTEELQSEKFVLLQEKTKSEQEVAEIIEEKELLTaea 1542
Cdd:TIGR00606 469 ssdriLELDQELRKAERELSKAEKNSL----------TETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRT--- 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1543 aqlaahiktlksDFAALSKSKAELQELHSCLTKILDDLQLNHEVTLAEKAQVMQDNQNLLAEKSEMMLEKDELLKEKEML 1622
Cdd:TIGR00606 536 ------------QMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASL 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1623 AESYFILQKEISQLAKTNSHISANLLE---SQNENRTLRKDKNKLTLKIRELETLQSFTAAQTaedamQIMEQMTKEKTE 1699
Cdd:TIGR00606 604 EQNKNHINNELESKEEQLSSYEDKLFDvcgSQDEESDLERLKEEIEKSSKQRAMLAGATAVYS-----QFITQLTDENQS 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1700 TLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAE 1779
Cdd:TIGR00606 679 CCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNR 758
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1780 ELGRSRDEVTSHQKL-------EEERSVLNNQLLEMKKSLPSNTLRESKFIKDADEEKAS-LQKSISITSALLTEKDAEL 1851
Cdd:TIGR00606 759 DIQRLKNDIEEQETLlgtimpeEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSdLDRTVQQVNQEKQEKQHEL 838
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1852 EKLRNEVTVLRG----ENASAKSLHSVVQTLESDKVKLELKVKNLElQLKENKRQLSS--SSGNTDTQADEDERAQESQQ 1925
Cdd:TIGR00606 839 DTVVSKIELNRKliqdQQEQIQHLKSKTNELKSEKLQIGTNLQRRQ-QFEEQLVELSTevQSLIREIKDAKEQDSPLETF 917
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*...
gi 1622847186 1926 MIDFLNSVIVDLQRKNQDLK---MKVEMMSEAALN--GNGDDLNNYDSDDQEKQSKKK 1978
Cdd:TIGR00606 918 LEKDQQEKEELISSKETSNKkaqDKVNDIKEKVKNihGYMKDIENKIQDGKDDYLKQK 975
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
1376-1552 |
1.31e-03 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 43.21 E-value: 1.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1376 NIDALKKELQERKNENQELVASKCDLSLMLKEAQNAKKnlekehthiLQAKENLDAELNTCCSEKNILLRDSLNLQEECQ 1455
Cdd:pfam09787 1 NLESAKQELADYKQKAARILQSKEKLIASLKEGSGVEG---------LDSSTALTLELEELRQERDLLREEIQKLRGQIQ 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1456 KLSEEIQEMQQSLilEQEARAKEKESSLYENNQLHGRMVLLEQEVE------ELRVCTEELQSEKFVL---LQEKTKSEQ 1526
Cdd:pfam09787 72 QLRTELQELEAQQ--QEEAESSREQLQELEEQLATERSARREAEAElerlqeELRYLEEELRRSKATLqsrIKDREAEIE 149
|
170 180
....*....|....*....|....*.
gi 1622847186 1527 EVAEIIEEKELLTAEAAQLAAHIKTL 1552
Cdd:pfam09787 150 KLRNQLTSKSQSSSSQSELENRLHQL 175
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
681-932 |
1.33e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 43.76 E-value: 1.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 681 EMEETLNKLQEA------EIKKEKFAEASEEAVSVQRSMQETVNKLHQ--------KEEQFNMLSSDLEKLR----ENLA 742
Cdd:PRK05771 17 YKDEVLEALHELgvvhieDLKEELSNERLRKLRSLLTKLSEALDKLRSylpklnplREEKKKVSVKSLEELIkdveEELE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 743 EMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSqltkmnDELRLKERYVEELQLKLTKANENASFLQKSIEDmT 822
Cdd:PRK05771 97 KIEKEIKELEEEISELENEIKELEQEIERLEPWGNFDLD------LSLLLGFKYVSVFVGTVPEDKLEELKLESDVEN-V 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 823 LKAEQSQQEAAEKHEEEKKELERKLSDLEKkmetshNQCQELKAGYEKATSETKTKHEEILQNLRKTLLDTEDKLKGARE 902
Cdd:PRK05771 170 EYISTDKGYVYVVVVVLKELSDEVEEELKK------LGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAK 243
|
250 260 270
....*....|....*....|....*....|.
gi 1622847186 903 ENSGLLQELEE-LRKQADKAKSLTYLLTSAK 932
Cdd:PRK05771 244 KYLEELLALYEyLEIELERAEALSKFLKTDK 274
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
609-905 |
1.34e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 43.69 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 609 EFAELKTQIEKMRLDYQ--------HEIENLQNQQDSERSAHAKEM------EALRAKLMKVIKEKENSLEAIKSKLDKA 674
Cdd:PLN03229 437 EVEKLKEQILKAKESSSkpselalnEMIEKLKKEIDLEYTEAVIAMglqerlENLREEFSKANSQDQLMHPVLMEKIEKL 516
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 675 EDQ---------HLVEMEETLNKLQEAEIKK---EKFAEASEEAVSVQRSMQETVNKLHQKEEqfnmlssdLEKLRENLA 742
Cdd:PLN03229 517 KDEfnkrlsrapNYLSLKYKLDMLNEFSRAKalsEKKSKAEKLKAEINKKFKEVMDRPEIKEK--------MEALKAEVA 588
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 743 EMEA-KFRE-KDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELrLKERYVEELQLKLTKANENASflqKSIED 820
Cdd:PLN03229 589 SSGAsSGDElDDDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDT-AEQTPPPNLQEKIESLNEEIN---KKIER 664
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 821 MtLKAEQSQQEAAEKHEEEKKELERKLSDLEKKMETSHNQCQElKAGYEKATSETKTKHEEILQNLrKTLLDTEDKLKGA 900
Cdd:PLN03229 665 V-IRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQ-KIAEALNSSELKEKFEELEAEL-AAARETAAESNGS 741
|
....*
gi 1622847186 901 REENS 905
Cdd:PLN03229 742 LKNDD 746
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
402-761 |
1.57e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 43.13 E-value: 1.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 402 HVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRveeesitKGDLEVATVSEKSRIMELEKDLALRVQEVA 481
Cdd:pfam19220 49 RLLELEALLAQERAAYGKLRRELAGLTRRLSAAEGELEELVAR-------LAKLEAALREAEAAKEELRIELRDKTAQAE 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 482 ELRRRLesnkpAGDVDMSLSLLQEISSLQEKLEVT---RTDHQREITSLKEHFGAREEthqkEIKALYTATEKLSKENES 558
Cdd:pfam19220 122 ALERQL-----AAETEQNRALEEENKALREEAQAAekaLQRAEGELATARERLALLEQ----ENRRLQALSEEQAAELAE 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 559 LKSKLehankensdvialwkSKLETAIASHQQAMEELKVSFSKglgtetaefaelkTQIEKMRLDYQHEIENlqNQQDSE 638
Cdd:pfam19220 193 LTRRL---------------AELETQLDATRARLRALEGQLAA-------------EQAERERAEAQLEEAV--EAHRAE 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 639 RSAHAKEMEALRAKLMkvikekensleaikskldkAEDQHLVEMEETLNKLQEAEIKKE-KFAEASEEAVSVQRSMQEtv 717
Cdd:pfam19220 243 RASLRMKLEALTARAA-------------------ATEQLLAEARNQLRDRDEAIRAAErRLKEASIERDTLERRLAG-- 301
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1622847186 718 nklhqkeeqfnmLSSDLEKLRENLAEMEAKFREKDEREEQLIKA 761
Cdd:pfam19220 302 ------------LEADLERRTQQFQEMQRARAELEERAEMLTKA 333
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
649-791 |
1.86e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.23 E-value: 1.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 649 LRAKLMKVIKEKENSLEAIkskLDKAEDQHLVEMEETLNKLQEaEIKKEKfAEASEEAVSVQRSMQETVNKLHQKEEQFN 728
Cdd:PRK12704 25 RKKIAEAKIKEAEEEAKRI---LEEAKKEAEAIKKEALLEAKE-EIHKLR-NEFEKELRERRNELQKLEKRLLQKEENLD 99
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622847186 729 MLSSDLEKLRENL----AEMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQ--LTKMNDELR 791
Cdd:PRK12704 100 RKLELLEKREEELekkeKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEilLEKVEEEAR 168
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
578-767 |
1.95e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 43.28 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 578 KSKLETAIASHQQAMEELKvsfskglgTETAEFAELKTQIEKMRLDYQHEIENLQNQQDSERSAHAKEMEALRAKLMKVI 657
Cdd:PRK00409 515 KEKLNELIASLEELERELE--------QKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEA 586
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 658 KEKENSLEAIKSKLDKAEDQHlvEMEETLNKLQEA-EIKKEKFAEASEEAVSVQ-------RSMQETVNKLHQKEEQFNM 729
Cdd:PRK00409 587 DEIIKELRQLQKGGYASVKAH--ELIEARKRLNKAnEKKEKKKKKQKEKQEELKvgdevkyLSLGQKGEVLSIPDDKEAI 664
|
170 180 190
....*....|....*....|....*....|....*...
gi 1622847186 730 LSSDLEKLRENLAEMEAKFREKDEREEQLIKAKEKLEN 767
Cdd:PRK00409 665 VQAGIMKMKVPLSDLEKIQKPKKKKKKKPKTVKPKPRT 702
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1661-1797 |
1.96e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.23 E-value: 1.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1661 KNKLTLKIRELEtlqsFTAAQTAEDAMQIMEQMTKE-----KTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKS 1735
Cdd:PRK12704 26 KKIAEAKIKEAE----EEAKRILEEAKKEAEAIKKEalleaKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRK 101
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622847186 1736 KELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEEL-GRSRDEVTSH--QKLEEE 1797
Cdd:PRK12704 102 LELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERIsGLTAEEAKEIllEKVEEE 166
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
645-797 |
2.08e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 43.15 E-value: 2.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 645 EMEALRAKLMKVIKEKEnsleAIKSKLDKAEDQHLVEMEETLNKLQEaeikkekfaeaseeavsvqrsmqetvnKLHQKE 724
Cdd:COG0542 412 ELDELERRLEQLEIEKE----ALKKEQDEASFERLAELRDELAELEE---------------------------ELEALK 460
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 725 EQFNMLSSDLEKLRENLAEMEAKFREKDEREEQLIKAKEKL------------ENDIAEIM---------KMSGDNSSQL 783
Cdd:COG0542 461 ARWEAEKELIEEIQELKEELEQRYGKIPELEKELAELEEELaelapllreevtEEDIAEVVsrwtgipvgKLLEGEREKL 540
|
170
....*....|....
gi 1622847186 784 TKMNDElrLKERYV 797
Cdd:COG0542 541 LNLEEE--LHERVI 552
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
710-1221 |
2.09e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.11 E-value: 2.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 710 QRSMQETVNKLHQKEEQFNMLSSDLEKLRENLAEMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDE 789
Cdd:PRK02224 201 EKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 790 LRLKERYVEELQLKLTKANENASFLQKSIEDMTLKAE-------------QSQQEAAEKHEEEKKELERKLSDLEKKMET 856
Cdd:PRK02224 281 VRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREeledrdeelrdrlEECRVAAQAHNEEAESLREDADDLEERAEE 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 857 SHNQCQELKAGYEKATSETKTKHEEI------LQNLRKTLLDTEDKLKGAREENSGLLQELEELRkqaDKAKSLTYLLTS 930
Cdd:PRK02224 361 LREEAAELESELEEAREAVEDRREEIeeleeeIEELRERFGDAPVDLGNAEDFLEELREERDELR---EREAELEATLRT 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 931 AKKEIELMSEELRGLK---------------------SEKQLLSQEGNDLKLENGSL------LSKLVELEAKIALLQGD 983
Cdd:PRK02224 438 ARERVEEAEALLEAGKcpecgqpvegsphvetieedrERVEELEAELEDLEEEVEEVeerlerAEDLVEAEDRIERLEER 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 984 QQKLwsvnETLNLEKEKFLEEKQD--AEKHYEQEHLNKEVlAVEREKLLKEINVAQEELLKINMENDSLQASKVSMQTL- 1060
Cdd:PRK02224 518 REDL----EELIAERRETIEEKREraEELRERAAELEAEA-EEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLe 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1061 -IEELQLSKDALIAKTEKDQEERDHLADqikkLITENFILAKDKDDIIQKLQSSYEElvkdqkalvQDIEDLTAEKKSAL 1139
Cdd:PRK02224 593 rIRTLLAAIADAEDEIERLREKREALAE----LNDERRERLAEKRERKRELEAEFDE---------ARIEEAREDKERAE 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1140 EKLSNLDNTCIALKVERDNALQNNRDLQLETDMLLHDQEKLNAsLQAALQVKQLLRSEASGLRAQLDDASKALRKAELET 1219
Cdd:PRK02224 660 EYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREA-LENRVEALEALYDEAEELESMYGDLRAELRQRNVET 738
|
..
gi 1622847186 1220 MQ 1221
Cdd:PRK02224 739 LE 740
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1107-1334 |
2.30e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 2.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1107 IQKLQSSYEELVKDQKALVQdiedlTAEKKSALEKLSNLDNTCIALKVERD--NALQNNRDL---QLETDMLLHDQEKLN 1181
Cdd:COG4913 227 ADALVEHFDDLERAHEALED-----AREQIELLEPIRELAERYAAARERLAelEYLRAALRLwfaQRRLELLEAELEELR 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1182 ASLQAALQVKQLLRSEASGLRAQLDDASKALRKAELETM-QLQATNTSLTKLLEEIKARRAVTDSECIQLlheKETLAAS 1260
Cdd:COG4913 302 AELARLEAELERLEARLDALREELDELEAQIRGNGGDRLeQLEREIERLERELEERERRRARLEALLAAL---GLPLPAS 378
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622847186 1261 ERRLLAEKEELLSENRIITEKLHKCSEEAAhtemslnekityltsekeMASQKMTKLKKHQDSLLKEKSALETQ 1334
Cdd:COG4913 379 AEEFAALRAEAAALLEALEEELEALEEALA------------------EAEAALRDLRRELRELEAEIASLERR 434
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
525-769 |
2.40e-03 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 42.71 E-value: 2.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 525 TSLKEHFGAREETHQKEIKALYTATEKLSKENESLKSKLEHANKENSdvialwkskLETAIASHQQAMEELKvsfsKGLG 604
Cdd:pfam05667 279 ELLSSFSGSSTTDTGLTKGSRFTHTEKLQFTNEAPAATSSPPTKVET---------EEELQQQREEELEELQ----EQLE 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 605 TETAEFAELKTQIEKMRLDYQHEIENLQnQQDSERSAHAKEMEaLRAKLMKVIKEKENSLEAIKSKLDKAEdQHLVEMEE 684
Cdd:pfam05667 346 DLESSIQELEKEIKKLESSIKQVEEELE-ELKEQNEELEKQYK-VKKKTLDLLPDAEENIAKLQALVDASA-QRLVELAG 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 685 TLNKLQEAEIKKekfAEASEEAVSVQRSmqETVNKLhqkeeqfnmlsSDLEKLRENLAEMEAKFREKDEREEQLIKAKEK 764
Cdd:pfam05667 423 QWEKHRVPLIEE---YRALKEAKSNKED--ESQRKL-----------EEIKELREKIKEVAEEAKQKEELYKQLVAEYER 486
|
....*
gi 1622847186 765 LENDI 769
Cdd:pfam05667 487 LPKDV 491
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1228-1759 |
2.58e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.74 E-value: 2.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1228 SLTKLLEEIKARRAVTDSECIQLLHEKETLAASERRLLAEKEELLSENRIITEkLHKCSEEAAHTEMSLNEKITYLTSEK 1307
Cdd:PRK03918 211 EISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRE-LEERIEELKKEIEELEEKVKELKELK 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1308 EMAsQKMTKLKKHQDSLLKEKSALETQNGVLLAERENSIKAIGDLK---------RQCDQESANRRIIVQENMKLLGNID 1378
Cdd:PRK03918 290 EKA-EEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEekeerleelKKKLKELEKRLEELEERHELYEEAK 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1379 ALKKELQERKNENQELvaSKCDLSLMLKEAQNAKKNLEKEHTHILQAKENLD---AELNTCCSE------KNILLRDSLN 1449
Cdd:PRK03918 369 AKKEELERLKKRLTGL--TPEKLEKELEELEKAKEEIEEEISKITARIGELKkeiKELKKAIEElkkakgKCPVCGRELT 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1450 LQEECQKLSEEIQEMQQslILEQEARAKEKESSLYENNQLHGRMVLLEQEVEELRVCTEELQSekfvlLQEKTKS--EQE 1527
Cdd:PRK03918 447 EEHRKELLEEYTAELKR--IEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKE-----LEEKLKKynLEE 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1528 VAEIIEEKELLTAEAAQLAAHIKTLKSDFAALSKSKAELQELHSCLTKILDDLQlnhevtlaekaqvmqdnqNLLAEKSE 1607
Cdd:PRK03918 520 LEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELA------------------ELLKELEE 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1608 MMLEKDELLKEKEMLAESYFilqKEISQLAKTNSHISANLLESQNENRTLRKDKNKLTLKIRELETLQSftaaqtaedam 1687
Cdd:PRK03918 582 LGFESVEELEERLKELEPFY---NEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRK----------- 647
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622847186 1688 QIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQA 1759
Cdd:PRK03918 648 ELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKA 719
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
521-1189 |
2.59e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.11 E-value: 2.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 521 QREITSLKEHFGAREETHQKEIKALYTATEKLSKENESLKSKLEHANKENSDVialwKSKLETAIASHQQAMEELKVSFS 600
Cdd:TIGR00606 236 SREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSEL----ELKMEKVFQGTDEQLNDLYHNHQ 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 601 KGLGTETAEFAELKTQIEKMRLDYQheienLQNQQDSERSAHAKEMEALRAKLMKVIKEKENSLEAIKSKLDKAEDQHLV 680
Cdd:TIGR00606 312 RTVREKERELVDCQRELEKLNKERR-----LLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGP 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 681 EMEETLNKLQEAEIKKEkfaeaSEEAVSVQRSMQETVNKLHQKEEQfnmlssdLEKLREnlaEMEAKFREKDEREEQLIK 760
Cdd:TIGR00606 387 FSERQIKNFHTLVIERQ-----EDEAKTAAQLCADLQSKERLKQEQ-------ADEIRD---EKKGLGRTIELKKEILEK 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 761 AKEKLENDIAEIMKMSGdNSSQLTKMNDELRLKERyveelqlKLTKANENASFLQKSIEDMTLKAEQSQQEAAEKHEEEK 840
Cdd:TIGR00606 452 KQEELKFVIKELQQLEG-SSDRILELDQELRKAER-------ELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQE 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 841 KELERKLSDLEKKME-------TSHNQCQELKA-GYEKATSET-----KTKHEEILQNLRKTLLDTEDKLKGAREENSGL 907
Cdd:TIGR00606 524 MEQLNHHTTTRTQMEmltkdkmDKDEQIRKIKSrHSDELTSLLgyfpnKKQLEDWLHSKSKEINQTRDRLAKLNKELASL 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 908 LQELEELRKQADK-----------------AKSLTYLLTSAKKEIELMSEELRGLKSEKQLLSQEGNDLKLENGS---LL 967
Cdd:TIGR00606 604 EQNKNHINNELESkeeqlssyedklfdvcgSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSccpVC 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 968 SKLVELEAKIALLQGDQQKLWSVNETLNLEKEKFLEEKqdaEKHYEQEHLNKEVLAVEREKLLKEINVAQEELLKINME- 1046
Cdd:TIGR00606 684 QRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKK---EKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDi 760
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1047 ---NDSLQASKVSMQTLIEELQLSKDAL-----------------------------------IAKTEKDQEERDHLADQ 1088
Cdd:TIGR00606 761 qrlKNDIEEQETLLGTIMPEEESAKVCLtdvtimerfqmelkdverkiaqqaaklqgsdldrtVQQVNQEKQEKQHELDT 840
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1089 IKKLITENFILAKDKDDIIQKLQSSYEELVKDQKALVQDIEDLTAEKKSALEKLSNLDNTCIALKVERDNAL---QNNRD 1165
Cdd:TIGR00606 841 VVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSpleTFLEK 920
|
730 740
....*....|....*....|....
gi 1622847186 1166 LQLETDMLLHDQEKLNASLQAALQ 1189
Cdd:TIGR00606 921 DQQEKEELISSKETSNKKAQDKVN 944
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
690-1789 |
2.64e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.85 E-value: 2.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 690 QEAEIKKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDL---------------------EKLRENLAEMEAKF 748
Cdd:pfam01576 5 EEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLqaetelcaeaeemrarlaarkQELEEILHELESRL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 749 REKDEREEQLIKAKEKLENDIAEImkmsgdnssqltkmndELRLKERYVEELQLKLTKANENASFlqKSIEDMTLKAEQS 828
Cdd:pfam01576 85 EEEEERSQQLQNEKKKMQQHIQDL----------------EEQLDEEEAARQKLQLEKVTTEAKI--KKLEEDILLLEDQ 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 829 QQEAAEKHEEEKKELERKLSDLEKKMETSHNqCQELKAGYEKATSETK---TKHEEILQNLRKTLLDTEDKLKGAREENS 905
Cdd:pfam01576 147 NSKLSKERKLLEERISEFTSNLAEEEEKAKS-LSKLKNKHEAMISDLEerlKKEEKGRQELEKAKRKLEGESTDLQEQIA 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 906 GLLQELEELRKQAdkaksltylltsAKKEIELMSEELRglksekqlLSQEGNDlkleNGSLLSKLVELEAKIALLQGDqq 985
Cdd:pfam01576 226 ELQAQIAELRAQL------------AKKEEELQAALAR--------LEEETAQ----KNNALKKIRELEAQISELQED-- 279
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 986 klwsvnetlnLEKEKFLEEKQDAEKHYEQEHLnkEVLAVEREKLLKEINVAQEELLKINMENDSLQaskvsmQTLIEELQ 1065
Cdd:pfam01576 280 ----------LESERAARNKAEKQRRDLGEEL--EALKTELEDTLDTTAAQQELRSKREQEVTELK------KALEEETR 341
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1066 LSKDALIAKTEKDQEERDHLADQIKKLITENFILAKDKddiiQKLQSSYEELVKDQKALVQDIEDLTAEKKSALEKLSNL 1145
Cdd:pfam01576 342 SHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAK----QALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQEL 417
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1146 DNTCIALKVERDNALQNNRDLQLETdmllhdqEKLNASLQAALQVKQLLRSEASGLRAQLDDASKALRKaelETMQLQAT 1225
Cdd:pfam01576 418 QARLSESERQRAELAEKLSKLQSEL-------ESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQE---ETRQKLNL 487
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1226 NTSLTKLLEEIKARRAvtdseciQLLHEKETLAASERRLLAEKEELLsenriiteKLHKCSEEAAHTEMSLNEKITYLTS 1305
Cdd:pfam01576 488 STRLRQLEDERNSLQE-------QLEEEEEAKRNVERQLSTLQAQLS--------DMKKKLEEDAGTLEALEEGKKRLQR 552
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1306 EKEMASQKMTKLKKHQDSLLKEKSALETQNGVLLAERENSIKAIGDL---KRQCDQESANRRIIVQENMKllgniDALKK 1382
Cdd:pfam01576 553 ELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLekkQKKFDQMLAEEKAISARYAE-----ERDRA 627
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1383 ELQERKNENQELvaskcDLSLMLKEAQNAKKNLEKehthilqAKENLDAELNTCCSEKNILLRDSLNLQEECQKLSEEIQ 1462
Cdd:pfam01576 628 EAEAREKETRAL-----SLARALEEALEAKEELER-------TNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVE 695
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1463 EMQQSLI-LEQEARAKEKESSLYENN----------QLHGR-------MVLLEQEVEELRVCTEELQSEKFVLLQEKTKS 1524
Cdd:pfam01576 696 EMKTQLEeLEDELQATEDAKLRLEVNmqalkaqferDLQARdeqgeekRRQLVKQVRELEAELEDERKQRAQAVAAKKKL 775
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1525 EQEVAEIieEKELLTAEAAQLAAhIKTLKSDFAALSKSKAELQELHSCLTKILDDLQLNHEVTLAEKAQVMQDNQNLLAE 1604
Cdd:pfam01576 776 ELDLKEL--EAQIDAANKGREEA-VKQLKKLQAQMKDLQRELEEARASRDEILAQSKESEKKLKNLEAELLQLQEDLAAS 852
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1605 ---KSEMMLEKDELLKEKEMLAESYFILQKEISQLAKTNSHISANLLESQNENRTLRKDKNKLTLKIRELETLQSF--TA 1679
Cdd:pfam01576 853 eraRRQAQQERDELADEIASGASGKSALQDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTELAAerST 932
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1680 AQTAEDAMQIMEQMTKEKTETLASLEDT-----KQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIE 1754
Cdd:pfam01576 933 SQKSESARQQLERQNKELKAKLQEMEGTvkskfKSSIAALEAKIAQLEEQLEQESRERQAANKLVRRTEKKLKEVLLQVE 1012
|
1130 1140 1150
....*....|....*....|....*....|....*
gi 1622847186 1755 TLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVT 1789
Cdd:pfam01576 1013 DERRHADQYKDQAEKGNSRMKQLKRQLEEAEEEAS 1047
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
713-1240 |
2.67e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.97 E-value: 2.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 713 MQETVNKLHQKEEQFNMLSSDLEKLRENLAEMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRL 792
Cdd:PRK01156 171 LKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDM 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 793 KERYVEEL---QLKLTKANENASFLqKSIEDMTLKAEQSQQEAAEKHEEEKKELERKLSDLEKKMETSHNQCQELKAGYE 869
Cdd:PRK01156 251 KNRYESEIktaESDLSMELEKNNYY-KELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEINKYHAIIK 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 870 KATSETKTKHEEILQNLRKTLLDTE-DKLKGAREENSGLLQELEELRK--------QADKAKSLTYLLTSAKKEIELMSE 940
Cdd:PRK01156 330 KLSVLQKDYNDYIKKKSRYDDLNNQiLELEGYEMDYNSYLKSIESLKKkieeysknIERMSAFISEILKIQEIDPDAIKK 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 941 ELRGLKSEKQLLSQEGNDLKLENGSLLSKLVELEAKIALLQGdQQKLWSVNETLNLEKEKFLEEKQDAEKHYEQE---HL 1017
Cdd:PRK01156 410 ELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNG-QSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEkirEI 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1018 NKEVLAVEREK---LLKEINVAQEELLKINMENDSLQASKVSMQTLIEELQLSKDALIAKTEKDQEERD-HLADQIKKLI 1093
Cdd:PRK01156 489 EIEVKDIDEKIvdlKKRKEYLESEEINKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSlKLEDLDSKRT 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1094 TENFILAKDKDDIIQKLQSSYEELVKDqkalVQDIEDLTAEKKSALEKLSNLDNTCIALKVERDNALQNNRDLQLETDML 1173
Cdd:PRK01156 569 SWLNALAVISLIDIETNRSRSNEIKKQ----LNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKIL 644
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622847186 1174 LHDQEKLNASLQAALQVKQLLRSEASGLRAQLDDASKALRKAEletMQLQATNTSLTKLLEEIKARR 1240
Cdd:PRK01156 645 IEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSR---KALDDAKANRARLESTIEILR 708
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
351-733 |
2.85e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.57 E-value: 2.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 351 TALQEALKEKQQHIEQLLAERDleraevaKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQ 430
Cdd:pfam07888 30 ELLQNRLEECLQERAELLQAQE-------AANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEK 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 431 LEEEKRKVEDLqfrveeeSITKGDLEVATVSEKSRIMELEKDLALRVQEVAELRRRLESNKPagDVDMSLSLLQEI---- 506
Cdd:pfam07888 103 YKELSASSEEL-------SEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKE--RAKKAGAQRKEEeaer 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 507 SSLQEKLEVTRTDHQR---EITSLKEHFGAREETHQKEIKALYTATEKLSK------ENESLKSKL----EHANKENSDV 573
Cdd:pfam07888 174 KQLQAKLQQTEEELRSlskEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTahrkeaENEALLEELrslqERLNASERKV 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 574 IALwKSKLETAIASHQQAMEELKVSFSKgLGTETAEFAELKTQIEKMRLDYQHEIENLQNQQDSERSAHAKEMEALRaKL 653
Cdd:pfam07888 254 EGL-GEELSSMAAQRDRTQAELHQARLQ-AAQLTLQLADASLALREGRARWAQERETLQQSAEADKDRIEKLSAELQ-RL 330
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 654 MKVIKEKENSLEAIKSKLDKAEDQHLVEMEETLNKLQEAeikKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSD 733
Cdd:pfam07888 331 EERLQEERMEREKLEVELGREKDCNRVQLSESRRELQEL---KASLRVAQKEKEQLQAEKQELLEYIRQLEQRLETVADA 407
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
683-1352 |
2.91e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 42.76 E-value: 2.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 683 EETLNKLQEAEIKKEKFAEASEeavsVQRSMQETVNKLH-----QKEEQFNMLSSD--LEKLRENLAEMEAKFREKDERE 755
Cdd:COG5022 816 LACIIKLQKTIKREKKLRETEE----VEFSLKAEVLIQKfgrslKAKKRFSLLKKEtiYLQSAQRVELAERQLQELKIDV 891
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 756 EQLIKAKEKLENDIAEIMKMSGDNSSQLtkmndelrlkeryVEELQLKltkaNENASFLQKSIEDMTLKAEQSQQEAAEK 835
Cdd:COG5022 892 KSISSLKLVNLELESEIIELKKSLSSDL-------------IENLEFK----TELIARLKKLLNNIDLEEGPSIEYVKLP 954
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 836 HEEEkkelerklsdLEKKMETSHNQCQELKAGYEKATsetktkheeilqNLRKTLLDTEDKLKGAREENSGLLQELEELR 915
Cdd:COG5022 955 ELNK----------LHEVESKLKETSEEYEDLLKKST------------ILVREGNKANSELKNFKKELAELSKQYGALQ 1012
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 916 KQADKAKSLTYLLTSAKKEIELMSEELRGLKSEKQLLSQEGNDLkLENGSLLSKLVELEAKIALLQGDQQKLWSVNETLN 995
Cdd:COG5022 1013 ESTKQLKELPVEVAELQSASKIISSESTELSILKPLQKLKGLLL-LENNQLQARYKALKLRRENSLLDDKQLYQLESTEN 1091
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 996 LEKEKFLEEKQDAEKH--YEQEHLNKEVLAVEREKLLKEI------NVAQEELLKINMENDSLQASKVSMQTLIEELqLS 1067
Cdd:COG5022 1092 LLKTINVKDLEVTNRNlvKPANVLQFIVAQMIKLNLLQEIskflsqLVNTLEPVFQKLSVLQLELDGLFWEANLEAL-PS 1170
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1068 KDALIAKTEKdqeeRDHLADQIKKLITENFILAKD-KDDIIQKLQSSYEELVKD--QKALVQDIEDLTAEKKSALEKLS- 1143
Cdd:COG5022 1171 PPPFAALSEK----RLYQSALYDEKSKLSSSEVNDlKNELIALFSKIFSGWPRGdkLKKLISEGWVPTEYSTSLKGFNNl 1246
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1144 NLDNTCIALKVERDNALQNNRDLQLETDMLLHDqEKLNASLQAALQVK-----QLLRSEASGLRAQLDDaSKALRKAELE 1218
Cdd:COG5022 1247 NKKFDTPASMSNEKLLSLLNSIDNLLSSYKLEE-EVLPATINSLLQYInvglfNALRTKASSLRWKSAT-EVNYNSEELD 1324
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1219 TMQLQATNTSLTKLLEEIKARRAVTDSECIQLLHEKETLAASERRLLAEKEELLSEnriiteklHKCSEEAAHTEMSLNE 1298
Cdd:COG5022 1325 DWCREFEISDVDEELEELIQAVKVLQLLKDDLNKLDELLDACYSLNPAEIQNLKSR--------YDPADKENNLPKEILK 1396
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*..
gi 1622847186 1299 KITYLT--SEKEMASQKMTKLKKHQDSLLK-EKSALETQNGVLLAERENSiKAIGDL 1352
Cdd:COG5022 1397 KIEALLikQELQLSLEGKDETEVHLSEIFSeEKSLISLDRNSIYKEEVLS-SLSALL 1452
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1713-1925 |
2.96e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.62 E-value: 2.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1713 KLQNELDTLKEN-NLKNVEELNKSKELLTVENQKME-EFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVTS 1790
Cdd:COG1196 217 ELKEELKELEAElLLLKLRELEAELEELEAELEELEaELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1791 HQKLEEERSV-------LNNQLLEMKKSLPSNTLRESKFIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRG 1863
Cdd:COG1196 297 LARLEQDIARleerrreLEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE 376
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622847186 1864 ENASAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDTQADEDERAQESQQ 1925
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEE 438
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1449-1786 |
3.62e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.19 E-value: 3.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1449 NLQEECQKlseEIQEMQQSLILEQEARAKEKESSLYENNQLHGRMVLLEQEVEELRVCTEELQSEKFVLLQEKTKSEQEV 1528
Cdd:pfam07888 34 NRLEECLQ---ERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASS 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1529 AEIIEEKELLTAEAAQLAAHIKTLKSDFAALSKSKAELQelhscltkilddlqlnhevtlAEKAQVMQDNQNLLAEKSEM 1608
Cdd:pfam07888 111 EELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERE---------------------TELERMKERAKKAGAQRKEE 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1609 MLEKDELLKEKEMLAESYFILQKEISQLAKTNSHISANLLESQNENRTLRKDKNKLTLKIRELE-TLQSFTAAQTAEDAM 1687
Cdd:pfam07888 170 EAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEaLLEELRSLQERLNAS 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1688 QIMEQMTKEKTETLASLEDTKQTN---AKLQNELDTLK--ENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQ 1762
Cdd:pfam07888 250 ERKVEGLGEELSSMAAQRDRTQAElhqARLQAAQLTLQlaDASLALREGRARWAQERETLQQSAEADKDRIEKLSAELQR 329
|
330 340
....*....|....*....|....
gi 1622847186 1763 KSQQLSALQEENVKLAEELGRSRD 1786
Cdd:pfam07888 330 LEERLQEERMEREKLEVELGREKD 353
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1370-1773 |
3.63e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 3.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1370 NMKLLGNIDALKKELQERKNENQELVASKCDLSLMLKEAQNAKKNLEKEHTHILQAKEN---------LDAELNTCCSEK 1440
Cdd:COG4717 69 NLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLlplyqeleaLEAELAELPERL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1441 NIL---LRDSLNLQEECQKLSEEIQEMQQSLILEQEARAKEKESSL----YENNQLHGRMVLLEQEVEELRVCTEELQSE 1513
Cdd:COG4717 149 EELeerLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELqdlaEELEELQQRLAELEEELEEAQEELEELEEE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1514 KFVLlqEKTKSEQEVAEIIEEKELLTAEAAQLAAHIKTLKSDFAALSKSKAELQELHSCLTKILDDLQLNHEVTLAEKAQ 1593
Cdd:COG4717 229 LEQL--ENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEE 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1594 VMQ-------DNQNLLAEKSEMMLEKDELLKEKEMLAESYFILQKEISQLAKTNSHISANLLESQNENRTLRKDKNKLTL 1666
Cdd:COG4717 307 LQAlpaleelEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEE 386
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1667 KIRELETLQSFTAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNlKNVEELNKSKELLTVENQKM 1746
Cdd:COG4717 387 LRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELE-EELEELREELAELEAELEQL 465
|
410 420
....*....|....*....|....*..
gi 1622847186 1747 EEfRKEIETLKQAAAQKSQQLSALQEE 1773
Cdd:COG4717 466 EE-DGELAELLQELEELKAELRELAEE 491
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
734-1240 |
3.82e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 3.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 734 LEKLRENLAEMEakfrEKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERYVEELQLKltkanenasf 813
Cdd:COG4717 73 LKELEEELKEAE----EKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALE---------- 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 814 lqksiedMTLKAEQSQQEAAEKHEEEKKELERKLSDLEKKMETSHNQCQELKAGYEKATSETKTKHEEILQNLRKTLLDT 893
Cdd:COG4717 139 -------AELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAEL 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 894 EDKLKGAREENSGLLQELEELRKQAdkaksltylltSAKKEIELMSEELRGLKSEKQLLSQEGNDlklenGSLLSKLVEL 973
Cdd:COG4717 212 EEELEEAQEELEELEEELEQLENEL-----------EAAALEERLKEARLLLLIAAALLALLGLG-----GSLLSLILTI 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 974 EAKIALLQGdqqKLWSVNETLNLEKEKFLEEKQDAEKHYEQEHLNKEVLAVEREKLLKEINVAQEELLKINMENDSLQAS 1053
Cdd:COG4717 276 AGVLFLVLG---LLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQEL 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1054 KVSMQTLIEELQLskdaliaktekdqeerDHLADQIKKLITENFilAKDKDDIIQKLQsSYEELVKDQKALVQDIEDLTA 1133
Cdd:COG4717 353 LREAEELEEELQL----------------EELEQEIAALLAEAG--VEDEEELRAALE-QAEEYQELKEELEELEEQLEE 413
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1134 EKKSALEKLSNLDNTciALKVERDNALQNNRDLQLETDMLLHDQEKLNASLQAALQVKQLlrseaSGLRAQLDDASKALR 1213
Cdd:COG4717 414 LLGELEELLEALDEE--ELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGEL-----AELLQELEELKAELR 486
|
490 500
....*....|....*....|....*..
gi 1622847186 1214 KAELETMQLQATNTSLTKLLEEIKARR 1240
Cdd:COG4717 487 ELAEEWAALKLALELLEEAREEYREER 513
|
|
| COG4026 |
COG4026 |
Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General ... |
886-1043 |
4.17e-03 |
|
Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General function prediction only];
Pssm-ID: 443204 [Multi-domain] Cd Length: 287 Bit Score: 41.25 E-value: 4.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 886 LRKTLLDTEDKLKGAREENSGLLQELEELrkqadkaksltylltsaKKEIELMSEELRGLKSEKQLLSQEGNDLKLENGS 965
Cdd:COG4026 133 LREELLELKEKIDEIAKEKEKLTKENEEL-----------------ESELEELREEYKKLREENSILEEEFDNIKSEYSD 195
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622847186 966 LLSKLVELEAKIALLQGDQQKLWsvnetlnleKEKFLEEKQDAEKHYE-QEHLNKEVLAVEREKLLKEINVAQEELLKI 1043
Cdd:COG4026 196 LKSRFEELLKKRLLEVFSLEELW---------KELFPEELPEEDFIYFaTENLKPGKIIVGQGYIAAESKEDAEEWLKI 265
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
605-764 |
4.46e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.03 E-value: 4.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 605 TETAEFAELKTQI------EKMRLDYQHEIENLQnQQDSERSAH-------AKEMEALRaKLMKVIKEKENSLEAIKSKL 671
Cdd:pfam17380 321 AEKARQAEMDRQAaiyaeqERMAMERERELERIR-QEERKRELErirqeeiAMEISRMR-ELERLQMERQQKNERVRQEL 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 672 DKAEDQHLVEmEETLNKLQEAEIKKEKFAEASEEAVSVQ---------RSMQETVNKLHQKEEQFNMLSSDLEKLRENLA 742
Cdd:pfam17380 399 EAARKVKILE-EERQRKIQQQKVEMEQIRAEQEEARQREvrrleeeraREMERVRLEEQERQQQVERLRQQEEERKRKKL 477
|
170 180
....*....|....*....|..
gi 1622847186 743 EMEAKFREKDEREEQLIKAKEK 764
Cdd:pfam17380 478 ELEKEKRDRKRAEEQRRKILEK 499
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1105-1314 |
4.52e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 4.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1105 DIIQKLQSSYEELVKDQKALVQDIEDLTAEKKSALEKLSNLDNTCIALKVERDNALQNNRDLQLETDMLLHDQEKLNASL 1184
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1185 QA--ALQVKQLLRSEASGLRAQL------DDASKALRKAEL----------ETMQLQATNTSLTKLLEEIKARRAVTDSE 1246
Cdd:COG4942 100 EAqkEELAELLRALYRLGRQPPLalllspEDFLDAVRRLQYlkylaparreQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622847186 1247 CIQLLHEKETLAAserrLLAEKEELLSENRIITEKLHKCSEEAAHTEMSLNEKITYLTSEKEMASQKM 1314
Cdd:COG4942 180 LAELEEERAALEA----LKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1062-1338 |
4.86e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.21 E-value: 4.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1062 EELQLSKDALiaKTEKDQEERDHLADQIkkLITENFILAK------DKDDIIQKLQSSYEELVKDQKALVQDIEDLTAEK 1135
Cdd:PRK11281 39 ADVQAQLDAL--NKQKLLEAEDKLVQQD--LEQTLALLDKidrqkeETEQLKQQLAQAPAKLRQAQAELEALKDDNDEET 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1136 KSALEKLSN--LDntciALKVERDNALQNNRDLQLETDMLLHDQ----EKLNASLQAALQVKQLLRSEASGLRA---QLD 1206
Cdd:PRK11281 115 RETLSTLSLrqLE----SRLAQTLDQLQNAQNDLAEYNSQLVSLqtqpERAQAALYANSQRLQQIRNLLKGGKVggkALR 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1207 DASKALRKAELETMQLQ--------ATNTSLTKLLEeikARRAVTdSECIQLL-HEKETL--AASERRL-LAEK--EELL 1272
Cdd:PRK11281 191 PSQRVLLQAEQALLNAQndlqrkslEGNTQLQDLLQ---KQRDYL-TARIQRLeHQLQLLqeAINSKRLtLSEKtvQEAQ 266
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622847186 1273 S---ENRIITEKLhkcseeaAHTEMSLNEKIT-YL---TSEKEMASQKMTKLKKHQDSLLKEKSALETQNGVL 1338
Cdd:PRK11281 267 SqdeAARIQANPL-------VAQELEINLQLSqRLlkaTEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVL 332
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
720-1457 |
5.25e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.88 E-value: 5.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 720 LHQKEEQFNMLSSDLEKLR--ENLAEMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQ-LTKMNDELRLKERY 796
Cdd:TIGR00618 158 LKAKSKEKKELLMNLFPLDqyTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQvLEKELKHLREALQQ 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 797 VEELQLKLTKanenasflqksiEDMTLKAEQSQQEAAEKHEEEKKELERKLSDLEKKMETSHNQCQELK-AGYEKATSET 875
Cdd:TIGR00618 238 TQQSHAYLTQ------------KREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPlAAHIKAVTQI 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 876 KTKHEEILQNL-------------RKTLLDTEDKLKGAREENSGLLQELEELRKQADKAKSLTYLLTSAKKEielmSEEL 942
Cdd:TIGR00618 306 EQQAQRIHTELqskmrsrakllmkRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTL----TQHI 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 943 RGLKSEKQLLSQEGNDLKlengSLLSKLVELEAKIALLQGD----QQKLWSVNETLNLEKEKFLEEKQDAEKHYeQEHLN 1018
Cdd:TIGR00618 382 HTLQQQKTTLTQKLQSLC----KELDILQREQATIDTRTSAfrdlQGQLAHAKKQQELQQRYAELCAAAITCTA-QCEKL 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1019 KEVLAVEREKLLKEinvaQEELLKiNMENDSLQASKVSMqtlIEELQLSKDALIAKTEKDQEERDHLADQIKKLITENFI 1098
Cdd:TIGR00618 457 EKIHLQESAQSLKE----REQQLQ-TKEQIHLQETRKKA---VVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTR 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1099 LAKDKDDIIQKLQSSYEELVKDQKALVQDIEDLTAEKKSALEKLSNLDNTCIALKVERDNALQNNRDLQLETDMLLHDQE 1178
Cdd:TIGR00618 529 RMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAED 608
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1179 KLNASLQAALQVKQllrSEASGLRAQLDDASKALRKAELETmQLQATNTSLTKLLEEIKARRAVTD-SECIQLLHEKETL 1257
Cdd:TIGR00618 609 MLACEQHALLRKLQ---PEQDLQDVRLHLQQCSQELALKLT-ALHALQLTLTQERVREHALSIRVLpKELLASRQLALQK 684
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1258 AASERRLLAEKEELLSEN----RIITEKLHKCSEEAAHTEMSLNEKITYLTSEKEMASQKMTKLKKHQDSLLKEKSALET 1333
Cdd:TIGR00618 685 MQSEKEQLTYWKEMLAQCqtllRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHF 764
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1334 QNgvllAERENSIKAIGDLKRQCDQESANRRIIVQENMKLLGNIDALKKelQERKNENQELVASKcdlSLMLKEAQNAKK 1413
Cdd:TIGR00618 765 NN----NEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIG--QEIPSDEDILNLQC---ETLVQEEEQFLS 835
|
730 740 750 760
....*....|....*....|....*....|....*....|....
gi 1622847186 1414 NLEKEHTHILQAKENLDaELNTCCSEKNILLRDSLNLQEECQKL 1457
Cdd:TIGR00618 836 RLEEKSATLGEITHQLL-KYEECSKQLAQLTQEQAKIIQLSDKL 878
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1044-1273 |
5.58e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.84 E-value: 5.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1044 NMENDSLQASKVSMQTLIEELQ---------LSKDALIAKTEKDQEERDHLADQIKKLITENFILAKDKDDIIQKLQSSY 1114
Cdd:PRK05771 5 RMKKVLIVTLKSYKDEVLEALHelgvvhiedLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1115 EELVKDQKALVQDIEDltaEKKSALEKLSNLDNTCIALKVERdNALQNNRDLQLETDMLLH-----------DQEKLNAS 1183
Cdd:PRK05771 85 EELIKDVEEELEKIEK---EIKELEEEISELENEIKELEQEI-ERLEPWGNFDLDLSLLLGfkyvsvfvgtvPEDKLEEL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1184 LQAALQVKQLLRSEASG--------LRAQLDDASKALRKAELETMQLQATNTsLTKLLEEIKARRAVTDSECIQLLHEKE 1255
Cdd:PRK05771 161 KLESDVENVEYISTDKGyvyvvvvvLKELSDEVEEELKKLGFERLELEEEGT-PSELIREIKEELEEIEKERESLLEELK 239
|
250
....*....|....*...
gi 1622847186 1256 TLAASERRLLAEKEELLS 1273
Cdd:PRK05771 240 ELAKKYLEELLALYEYLE 257
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1609-1977 |
7.00e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.43 E-value: 7.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1609 MLEKDELLKEKEMLAESYFILQKEISQLAKTNSHISANLLESQNENRTLRKDKNKLTLKIRELETLQSFTAAQTAEdamq 1688
Cdd:PRK01156 158 ILEINSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDD---- 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1689 imEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKE-LLTVENQKMEEFRKEIE---TLKQAAAQKS 1764
Cdd:PRK01156 234 --YNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEErHMKIINDPVYKNRNYINdyfKYKNDIENKK 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1765 QQLSALQ------EENVKLAEELGRSRDEVTSHQKLEEErsvLNNQLLEMK------KSLPSNTLRESKFIKDADEEKAS 1832
Cdd:PRK01156 312 QILSNIDaeinkyHAIIKKLSVLQKDYNDYIKKKSRYDD---LNNQILELEgyemdyNSYLKSIESLKKKIEEYSKNIER 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1833 LQKSISITSALLTEKDAELEKLRNEVTV-LRGENASAKSLHSVVQTLESDKVKLElkvKNLELQLKENKRQLSSSS---- 1907
Cdd:PRK01156 389 MSAFISEILKIQEIDPDAIKKELNEINVkLQDISSKVSSLNQRIRALRENLDELS---RNMEMLNGQSVCPVCGTTlgee 465
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1908 GNTDTQADEDERAQESQQMIDFLNSVIVDLQRKNQDLKMKVEMMseaalngNGDDLNNYDSDDQEKQSKK 1977
Cdd:PRK01156 466 KSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYL-------ESEEINKSINEYNKIESAR 528
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1519-1761 |
7.20e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 7.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1519 QEKTKSEQEVAEIIEEKELLTAEAAQLAAHIKTLKSDFAALSKSKAELQELHSCLTKILDDLQLNHEVTLAEKAQVMQDN 1598
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1599 QNLLAEKSEMMlekDELLKEKEMLAESYFILQKEISQLAKTNSHISANLLESQNENRTLRKDKNKLTLKIRELETLQsft 1678
Cdd:COG4942 100 EAQKEELAELL---RALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER--- 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1679 aaqtaedamQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQ 1758
Cdd:COG4942 174 ---------AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
...
gi 1622847186 1759 AAA 1761
Cdd:COG4942 245 AAG 247
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
908-1355 |
7.22e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 7.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 908 LQELEELRKQADKAKSLTYLLTSAKKEIELMSEELRGLKSEKQLLSQEGNDLK--LENGSLLSKLVELEAKIALLQGDQQ 985
Cdd:COG4717 70 LKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEklLQLLPLYQELEALEAELAELPERLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 986 KLwsvnetlnLEKEKFLEEKQDAEKHYEQEHlnkEVLAVEREKLLKEINVAQEELLKINMEN-DSLQASKVSMQTLIEEL 1064
Cdd:COG4717 150 EL--------EERLEELRELEEELEELEAEL---AELQEELEELLEQLSLATEEELQDLAEElEELQQRLAELEEELEEA 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1065 QLSKDALiaKTEKDQEERDHLADQIKKLITENFILAKD---------KDDIIQKLQSSYEELVKDQKALVQDIEDLTAEK 1135
Cdd:COG4717 219 QEELEEL--EEELEQLENELEAAALEERLKEARLLLLIaaallallgLGGSLLSLILTIAGVLFLVLGLLALLFLLLARE 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1136 KSALEKlsnldntcialKVERDNALQNNRDLQLETDMLLHDQEKLNASLQAalqvkqllrSEASGLRAQLDDASKALRKA 1215
Cdd:COG4717 297 KASLGK-----------EAEELQALPALEELEEEELEELLAALGLPPDLSP---------EELLELLDRIEELQELLREA 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1216 E--LETMQLQATNTSLTKLLEEIKARravTDSECIQLLHEKETLAASERRLLAEKEELLSENRIITEKLhkcseeAAHTE 1293
Cdd:COG4717 357 EelEEELQLEELEQEIAALLAEAGVE---DEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELL------EALDE 427
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622847186 1294 MSLNEKITYLTSEKEMASQKMTKLKKHQDSLLKEKSALETQNGV--LLAERENSIKAIGDLKRQ 1355
Cdd:COG4717 428 EELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELaeLLQELEELKAELRELAEE 491
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
1661-1978 |
7.44e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 41.10 E-value: 7.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1661 KNKLTLKIRELETLQSFTAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNEldtlkENNLKNVEELNKSKELLT 1740
Cdd:COG5185 175 NLKKLEIFGLTLGLLKGISELKKAEPSGTVNSIKESETGNLGSESTLLEKAKEIINI-----EEALKGFQDPESELEDLA 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1741 VENQKMEEFRKEIETLKQAA----AQKSQQLSALQEENVKLAEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKslpsnt 1816
Cdd:COG5185 250 QTSDKLEKLVEQNTDLRLEKlgenAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKATESLEEQLAAAEA------ 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1817 lrESKFIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLRGENASAKS---LHSVVQTLESDKVKLELKVKNLE 1893
Cdd:COG5185 324 --EQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEVELSKSseeLDSFKDTIESTKESLDEIPQNQR 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1894 LQLKENKRQLSSSSGNTDTQADEDERAQESQqmidfLNSVIVDLQRKNQDLKMKVEMMSEAALNGNGDDLNNYDSDDQEK 1973
Cdd:COG5185 402 GYAQEILATLEDTLKAADRQIEELQRQIEQA-----TSSNEEVSKLLNELISELNKVMREADEESQSRLEEAYDEINRSV 476
|
....*
gi 1622847186 1974 QSKKK 1978
Cdd:COG5185 477 RSKKE 481
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
615-1106 |
8.76e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.22 E-value: 8.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 615 TQIEKMRLDYQHEIENLQNQQDSERSAHAKEMEALRAKLMKVIKEKENSLEAIK--SKLDKAE--DQHLVEMEETLNKLQ 690
Cdd:COG5022 806 LGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKrfSLLKKETiyLQSAQRVELAERQLQ 885
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 691 E-----------AEIKKEKFAEASEEAVSVQRSMQETVN-----------------------KLHQKEEQFNMLSSDLEK 736
Cdd:COG5022 886 ElkidvksisslKLVNLELESEIIELKKSLSSDLIENLEfkteliarlkkllnnidleegpsIEYVKLPELNKLHEVESK 965
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 737 LRENLAEMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSqLTKMNDELRLKERYVEELQLKLTKANENASFL-- 814
Cdd:COG5022 966 LKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGA-LQESTKQLKELPVEVAELQSASKIISSESTELsi 1044
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 815 ----QKSIEDMTLKAEQSQqeAAEKHEEEKKELERKLSDLEKKMETSHNQCQELKAGYEKATSETKTKHEEILQNLRK-- 888
Cdd:COG5022 1045 lkplQKLKGLLLLENNQLQ--ARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQFIVAqm 1122
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 889 ---TLLDTEDK--------LKGAREENSGLLQELEELRKQADKAKSLTYLLTSAKKEIELMSEELRGLKSEkqLLSQEGN 957
Cdd:COG5022 1123 iklNLLQEISKflsqlvntLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFAALSEKRLYQSALYDEKSK--LSSSEVN 1200
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 958 DLKLENGSLLSKLVELEAKIALLQGDQQKLW-------SVNETLNLEKEKFLEEKQDAEKHYEQ----------EHLNKE 1020
Cdd:COG5022 1201 DLKNELIALFSKIFSGWPRGDKLKKLISEGWvpteystSLKGFNNLNKKFDTPASMSNEKLLSLlnsidnllssYKLEEE 1280
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1021 VLAVEREKLLKEINVAQEELLkinmendSLQASKVSMQTLIEELQLSKDALIAKTEKdqeERDHLADQIKKLITENFILA 1100
Cdd:COG5022 1281 VLPATINSLLQYINVGLFNAL-------RTKASSLRWKSATEVNYNSEELDDWCREF---EISDVDEELEELIQAVKVLQ 1350
|
....*.
gi 1622847186 1101 KDKDDI 1106
Cdd:COG5022 1351 LLKDDL 1356
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1695-1878 |
9.00e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 9.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1695 KEKTETLASLEDTKQTNAKLQNELDTLKENnlknVEELNKSKELLTVENQKMEEFrKEIETLKQAAAQKSQQLSALQEEN 1774
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEE----LEELEAELEELREELEKLEKL-LQLLPLYQELEALEAELAELPERL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847186 1775 VKLAEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKSLPSNTLREskfIKDADEEKASLQKSISITSALLTEKDAELEKL 1854
Cdd:COG4717 149 EELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEE---LQDLAEELEELQQRLAELEEELEEAQEELEEL 225
|
170 180
....*....|....*....|....
gi 1622847186 1855 RNEVTVLRGENASAKSLHSVVQTL 1878
Cdd:COG4717 226 EEELEQLENELEAAALEERLKEAR 249
|
|
| |
