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Conserved domains on  [gi|1431641224|ref|XP_025614487|]
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protein transport protein SEC31 isoform X1 [Arachis hypogaea]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1421 pfam07223
UBA-like domain (DUF1421); This domain represents a conserved region that has a UBA like fold. ...
 482-526 1.61e-21

UBA-like domain (DUF1421); This domain represents a conserved region that has a UBA like fold. It is found in a number of plant proteins of unknown function.


:

Pssm-ID: 399892  Cd Length: 45  Bit Score: 87.46  E-value: 1.61e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1431641224 482 YSDLIEKLVNMGFRGDHVAGVIQRMEESGQPVDFNSVLDRLNVHS 526
Cdd:pfam07223   1 YGDMIDKVVSMGFPGDHVRSMILRMVEAGQPVDFNVVLDRLSSGS 45
PABP-1234 super family cl31127
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ...
 358-470 1.07e-03

polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.


The actual alignment was detected with superfamily member TIGR01628:

Pssm-ID: 130689 [Multi-domain]  Cd Length: 562  Bit Score: 41.72  E-value: 1.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431641224 358 NSMPM-QMPYSRIPPAASGhsdAMPYGYSGSGRTGPQQPLPPQIKSSFPGqPGDPYGTSATHAAPPPTSAYMIYDSEGGR 436
Cdd:TIGR01628 378 LQPRMrQLPMGSPMGGAMG---QPPYYGQGPQQQFNGQPLGWPRMSMMPT-PMGPGGPLRPNGLAPMNAVRAPSRNAQNA 453

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1431641224 437 THPPPQPPHFAQAGYPPSSASLQNPAPHNLMVRN 470
Cdd:TIGR01628 454 AQKPPMQPVMYPPNYQSLPLSQDLPQPQSTASQG 487
DUF4363 super family cl16766
Domain of unknown function (DUF4363); This family of proteins is found in bacteria. Proteins ...
 107-162 9.20e-03

Domain of unknown function (DUF4363); This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length.


The actual alignment was detected with superfamily member pfam14276:

Pssm-ID: 464121  Cd Length: 107  Bit Score: 36.07  E-value: 9.20e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1431641224 107 IDKSIGEMRSDLNT--------DHGEAELKLNSLEKHIQEVHRSVQILRDKQELADTQKELAKL 162
Cdd:pfam14276   7 LKKSTDELTEQLEEieaaieneDWEEAAKKLEKLEKEWEKKKKKLSIFIDHEELDEIETSLAKL 70
 
Name Accession Description Interval E-value
DUF1421 pfam07223
UBA-like domain (DUF1421); This domain represents a conserved region that has a UBA like fold. ...
 482-526 1.61e-21

UBA-like domain (DUF1421); This domain represents a conserved region that has a UBA like fold. It is found in a number of plant proteins of unknown function.


Pssm-ID: 399892  Cd Length: 45  Bit Score: 87.46  E-value: 1.61e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1431641224 482 YSDLIEKLVNMGFRGDHVAGVIQRMEESGQPVDFNSVLDRLNVHS 526
Cdd:pfam07223   1 YGDMIDKVVSMGFPGDHVRSMILRMVEAGQPVDFNVVLDRLSSGS 45
PABP-1234 TIGR01628
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ...
 358-470 1.07e-03

polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.


Pssm-ID: 130689 [Multi-domain]  Cd Length: 562  Bit Score: 41.72  E-value: 1.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431641224 358 NSMPM-QMPYSRIPPAASGhsdAMPYGYSGSGRTGPQQPLPPQIKSSFPGqPGDPYGTSATHAAPPPTSAYMIYDSEGGR 436
Cdd:TIGR01628 378 LQPRMrQLPMGSPMGGAMG---QPPYYGQGPQQQFNGQPLGWPRMSMMPT-PMGPGGPLRPNGLAPMNAVRAPSRNAQNA 453

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1431641224 437 THPPPQPPHFAQAGYPPSSASLQNPAPHNLMVRN 470
Cdd:TIGR01628 454 AQKPPMQPVMYPPNYQSLPLSQDLPQPQSTASQG 487
DUF4363 pfam14276
Domain of unknown function (DUF4363); This family of proteins is found in bacteria. Proteins ...
 107-162 9.20e-03

Domain of unknown function (DUF4363); This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length.


Pssm-ID: 464121  Cd Length: 107  Bit Score: 36.07  E-value: 9.20e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1431641224 107 IDKSIGEMRSDLNT--------DHGEAELKLNSLEKHIQEVHRSVQILRDKQELADTQKELAKL 162
Cdd:pfam14276   7 LKKSTDELTEQLEEieaaieneDWEEAAKKLEKLEKEWEKKKKKLSIFIDHEELDEIETSLAKL 70
 
Name Accession Description Interval E-value
DUF1421 pfam07223
UBA-like domain (DUF1421); This domain represents a conserved region that has a UBA like fold. ...
 482-526 1.61e-21

UBA-like domain (DUF1421); This domain represents a conserved region that has a UBA like fold. It is found in a number of plant proteins of unknown function.


Pssm-ID: 399892  Cd Length: 45  Bit Score: 87.46  E-value: 1.61e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1431641224 482 YSDLIEKLVNMGFRGDHVAGVIQRMEESGQPVDFNSVLDRLNVHS 526
Cdd:pfam07223   1 YGDMIDKVVSMGFPGDHVRSMILRMVEAGQPVDFNVVLDRLSSGS 45
PABP-1234 TIGR01628
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ...
 358-470 1.07e-03

polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.


Pssm-ID: 130689 [Multi-domain]  Cd Length: 562  Bit Score: 41.72  E-value: 1.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431641224 358 NSMPM-QMPYSRIPPAASGhsdAMPYGYSGSGRTGPQQPLPPQIKSSFPGqPGDPYGTSATHAAPPPTSAYMIYDSEGGR 436
Cdd:TIGR01628 378 LQPRMrQLPMGSPMGGAMG---QPPYYGQGPQQQFNGQPLGWPRMSMMPT-PMGPGGPLRPNGLAPMNAVRAPSRNAQNA 453

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1431641224 437 THPPPQPPHFAQAGYPPSSASLQNPAPHNLMVRN 470
Cdd:TIGR01628 454 AQKPPMQPVMYPPNYQSLPLSQDLPQPQSTASQG 487
DUF4363 pfam14276
Domain of unknown function (DUF4363); This family of proteins is found in bacteria. Proteins ...
 107-162 9.20e-03

Domain of unknown function (DUF4363); This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length.


Pssm-ID: 464121  Cd Length: 107  Bit Score: 36.07  E-value: 9.20e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1431641224 107 IDKSIGEMRSDLNT--------DHGEAELKLNSLEKHIQEVHRSVQILRDKQELADTQKELAKL 162
Cdd:pfam14276   7 LKKSTDELTEQLEEieaaieneDWEEAAKKLEKLEKEWEKKKKKLSIFIDHEELDEIETSLAKL 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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