|
Name |
Accession |
Description |
Interval |
E-value |
| AAI_LTSS |
cd00010 |
AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein ... |
33-93 |
1.24e-13 |
|
AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Pssm-ID: 237980 Cd Length: 63 Bit Score: 65.14 E-value: 1.24e-13
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1373882542 33 LASCYSYASGPATTPPSDCCAPLRQVNANNPDCVCQALANVGTSTA--VNATKVRALPSDCGI 93
Cdd:cd00010 1 LAPCLSYLTGGATAPPSDCCSGLKSVVKSDPKCLCAALNGPGASLLglKNATRALALPAACGL 63
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
103-416 |
6.33e-13 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 71.12 E-value: 6.33e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 103 SATPPPSAGTPpmTSPPMGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPST-----APPMGSTPPSTAPPMGs 177
Cdd:PHA03247 2698 LADPPPPPPTP--EPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGparpaRPPTTAGPPAPAPPAA- 2774
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 178 tpPSTAPPMGSTPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSLAPPMGSTPPSVAPPMGSTPP 257
Cdd:PHA03247 2775 --PAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPL 2852
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 258 SLAPPMGSTPPSMAPSMAPPMGSTPPAMAPSSGETPPAMSPPSPPSGAVSPAPiMTPPSGGTPPAPTVAPSSGEMPPTPS 337
Cdd:PHA03247 2853 GGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQP-ERPPQPQAPPPPQPQPQPPPPPQPQP 2931
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 338 GSMPSPPPESSPMAPSSGATPPGSSPTSPSEAPGSVNPSPANSPIGATNPPVTSPEAPGPVAPSN--NAASMGASWTVGV 415
Cdd:PHA03247 2932 PPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLtgHSLSRVSSWASSL 3011
|
.
gi 1373882542 416 A 416
Cdd:PHA03247 3012 A 3012
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
112-418 |
1.38e-12 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 69.97 E-value: 1.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 112 TPPMTSPPMGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPPSTAPPMGSTPP 191
Cdd:PHA03247 2552 PPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSP 2631
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 192 SMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSLAPPMGSTPPSVAPPMGSTPPSLAPPMGSTPPSMA 271
Cdd:PHA03247 2632 SPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPA 2711
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 272 PSMAPPMGSTPPAMAPSSGETPPAMSPPSPPSGAVSPAPIMTPPSGGTPPAPTVAPSSGEMPPTPSGSMPSPPPESSPMA 351
Cdd:PHA03247 2712 PHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASL 2791
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1373882542 352 PSSGATPPGSSPTSPSEAPGSvNPSPANSPIGATNPPVTSPEAPGPVAPSNNAASMGASWTVGVAAA 418
Cdd:PHA03247 2792 SESRESLPSPWDPADPPAAVL-APAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVA 2857
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
105-400 |
5.44e-11 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 64.96 E-value: 5.44e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 105 TPPPSAGTPPMTSPPMGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPPSTAP 184
Cdd:PHA03247 2600 APVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSP 2679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 185 PMGSTPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGS----MPPSMAPPMGSMPPSLAPPMGSTPPSVAPPMGSTPPSLA 260
Cdd:PHA03247 2680 PQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVsatpLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPAR 2759
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 261 PPMGSTPPSMAPSMAPPMGSTPPAMAPSSGETPPAMSPPSPPSGAVSPAPIMTPPSGGTPPAPTVAPSSGEMPPTPSGSM 340
Cdd:PHA03247 2760 PPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAP 2839
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1373882542 341 PSPPPESSPMAPSSG-------------ATPPGSSPTSPSEAPGS--VNPSPANSPIGATNPPVTSPEAPGPVAP 400
Cdd:PHA03247 2840 PPPPGPPPPSLPLGGsvapggdvrrrppSRSPAAKPAAPARPPVRrlARPAVSRSTESFALPPDQPERPPQPQAP 2914
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
107-395 |
6.25e-11 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 64.96 E-value: 6.25e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 107 PPSAGTPPMTSPPMGStPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPPSTAPPM 186
Cdd:PHA03247 2592 PPQSARPRAPVDDRGD-PRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRL 2670
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 187 GSTPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSmPPSLAPPMGSTPPSVAPPMGSTPPSLAPPMGS- 265
Cdd:PHA03247 2671 GRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALV-SATPLPPGPAAARQASPALPAAPAPPAVPAGPa 2749
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 266 TPPSMAPSMAPPMGSTPPAMAPSSGETPPAMSPPSPPSGAVSPAPIMTPPSGGTPPAPTvAPSSGEMPPTPSGSMPSPPP 345
Cdd:PHA03247 2750 TPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPP-AAVLAPAAALPPAASPAGPL 2828
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1373882542 346 ESSPMAPSSGATPPGSSPTSPSEAPGSVNPSPANSPIGATNPPVTSPEAP 395
Cdd:PHA03247 2829 PPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAP 2878
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
59-291 |
1.60e-10 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 63.08 E-value: 1.60e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 59 NANNPDCVCQALANVgtstavnatkvraLPSDCGITVDYARCPGSATPPPSAGTPPMTSPPMGSTPPSMTPPMGSTPPS- 137
Cdd:PRK07764 563 SPGNAEVLVTALAEE-------------LGGDWQVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAp 629
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 138 IAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPPSTAPPMGSTPPSMAPPMGSMPPSMAPPMGSMPPSMAP 217
Cdd:PRK07764 630 AGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATP 709
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1373882542 218 PMGSMPPSMAPPMGSMPPSLAPPMGSTPPSVAPPMGSTPPSLAPPMGSTPPSMAPSMAPPMGSTPPAMAPSSGE 291
Cdd:PRK07764 710 PAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEE 783
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
103-410 |
2.78e-10 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 62.65 E-value: 2.78e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 103 SATPPPSAGTPPMTSPPMGSTPPSMTPPMGSTPPSI-------APPMGSTPPSMAPPTGS---TPPSTAPPMGSTPPSTA 172
Cdd:PHA03247 2548 AGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTsrarrpdAPPQSARPRAPVDDRGDprgPAPPSPLPPDTHAPDPP 2627
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 173 PPMGSTPPSTAPPMGS--TPPSMAPPMGSMPPSMAPP-----MGSMPPSMAPPMGSMPPSMAPPMGSMPPSLAPPMGSTP 245
Cdd:PHA03247 2628 PPSPSPAANEPDPHPPptVPPPERPRDDPAPGRVSRPrrarrLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPT 2707
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 246 PSVAPPmGSTPPSLAPPMGSTPPSMAPSMAPPMGSTPPAMAPSSGETPPAMSPPSPPSGAVSPAPIMTPPSGGTPPAPTV 325
Cdd:PHA03247 2708 PEPAPH-ALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRP 2786
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 326 APSSGEMPPTPSGSMPSPPPESSPMAPSSGATPPGSSPTSPSEAPGSVNPSPANSPIGatnPPVTSPEAPGPVAPSNNAA 405
Cdd:PHA03247 2787 AVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPG---PPPPSLPLGGSVAPGGDVR 2863
|
....*
gi 1373882542 406 SMGAS 410
Cdd:PHA03247 2864 RRPPS 2868
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
101-325 |
3.97e-10 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 62.26 E-value: 3.97e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 101 PGSATPPPSAGTPPMTSPPMGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPP 180
Cdd:PHA03247 2751 PGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPP 2830
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 181 STAPPMGSTPPSMAPPMGSMPP--SMAP--PMGSMPPSMAPPMGSMPPSMAPPMGSMPPSLAPPMGSTP-PSVAPPMGST 255
Cdd:PHA03247 2831 PTSAQPTAPPPPPGPPPPSLPLggSVAPggDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFAlPPDQPERPPQ 2910
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1373882542 256 PPSLAPPMGSTPPSMAPSMAPPM---GSTPPAMAPSSGETPPAMSPPSPPSG---AVSPAPIMTPPSGGTPPAPTV 325
Cdd:PHA03247 2911 PQAPPPPQPQPQPPPPPQPQPPPpppPRPQPPLAPTTDPAGAGEPSGAVPQPwlgALVPGRVAVPRFRVPQPAPSR 2986
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
113-405 |
5.34e-10 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 61.88 E-value: 5.34e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 113 PPMTSPPMGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGS----TPPSTAPPMGSTPPSTAPPMGSTPPSTAPPMGS 188
Cdd:PHA03247 2674 AQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVsatpLPPGPAAARQASPALPAAPAPPAVPAGPATPGG 2753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 189 TPPSMAPPMGSMPPSMAPPMGsmpPSMAPPMGSMPPSMAPPMGSMPPSLAPPMGSTPPSVAPPMGSTPPSLAPPMGSTPP 268
Cdd:PHA03247 2754 PARPARPPTTAGPPAPAPPAA---PAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPP 2830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 269 SMAPSMAPPmGSTPPAMAPSSGETPPAMSPPSPPSGAVSPAPIMTPPSGGTPPAPTVApssgemppTPSGSMPSPPPESS 348
Cdd:PHA03247 2831 PTSAQPTAP-PPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLA--------RPAVSRSTESFALP 2901
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1373882542 349 PMAPSSGATPPGSSPT-SPSEAPGSVNPSPANSPIGATNPPVTSPEAPGPVAPSNNAA 405
Cdd:PHA03247 2902 PDQPERPPQPQAPPPPqPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAV 2959
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
102-289 |
1.44e-09 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 59.89 E-value: 1.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 102 GSATPPPSAGTPPMTSPPMGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPPS 181
Cdd:PRK12323 370 GGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPA 449
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 182 TAPPMGSTPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMP-PSMAPPMGSMPPSLAPP--------------MGSTPP 246
Cdd:PRK12323 450 PAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPaDDDPPPWEELPPEFASPapaqpdaapagwvaESIPDP 529
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1373882542 247 SVAPPMGSTPPSLAPPMGSTPPSMAPSMAPPMGSTPPAMAPSS 289
Cdd:PRK12323 530 ATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASG 572
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
72-278 |
2.25e-08 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 56.42 E-value: 2.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 72 NVGTSTAVNATKVRALPSDCGITVDYARCPGSATPPPSAGTPPMTSPPMGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAP 151
Cdd:PRK12323 371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAP 450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 152 -------PTGSTPPSTAPPMGSTPPSTAPPMGSTPPSTAPPMgstpPSMAPPMGSMPPSMAPPmgSMPPSMAPPMGSMPP 224
Cdd:PRK12323 451 apapaaaPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPA----DDDPPPWEELPPEFASP--APAQPDAAPAGWVAE 524
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1373882542 225 SMAPPMGSMPPSLAPPmgSTPPSVAPPMGSTPPSLAPPMGSTPPSMAPSMAPPM 278
Cdd:PRK12323 525 SIPDPATADPDDAFET--LAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDM 576
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
105-209 |
3.17e-08 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 55.55 E-value: 3.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 105 TPPPSAGtPPMTSPPMGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMgsTPPSTAP 184
Cdd:PRK14971 368 DASGGRG-PKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPV--NPPSTAP 444
|
90 100
....*....|....*....|....*
gi 1373882542 185 PmgSTPPSMAPPMGSMPPSMAPPMG 209
Cdd:PRK14971 445 Q--AVRPAQFKEEKKIPVSKVSSLG 467
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
23-283 |
4.36e-08 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 55.71 E-value: 4.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 23 TPDCQAAAISLASCYSYASGPATTPPSDCCAPLRQVNANNPDCVCQALANVGTSTAVNATKVRALPSDCGITVDYARCPG 102
Cdd:PHA03247 2741 PPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPP 2820
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 103 SATPPPSAGTPPMTSPPMGSTPPSMTPPMGSTPPSIAP--PMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPP 180
Cdd:PHA03247 2821 AASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPggDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFAL 2900
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 181 STAPPMGSTPPSMAPPMGSMPPSMAPPMgsmpPSMAPPMGSMPPSMAPPmgsmPPSLAPPMGSTPPSVAPPMGSTPPSLA 260
Cdd:PHA03247 2901 PPDQPERPPQPQAPPPPQPQPQPPPPPQ----PQPPPPPPPRPQPPLAP----TTDPAGAGEPSGAVPQPWLGALVPGRV 2972
|
250 260
....*....|....*....|...
gi 1373882542 261 PPMGSTPPSMAPSMAPPMGSTPP 283
Cdd:PHA03247 2973 AVPRFRVPQPAPSREAPASSTPP 2995
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
115-327 |
9.10e-08 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 54.50 E-value: 9.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 115 MTSPPMGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPmgSTPPSTAPPMGSTPPSTAPPMGSTPPSMA 194
Cdd:PRK12323 355 MTLLRMLAFRPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPP--AAPAAAPAAAAAARAVAAAPARRSPAPEA 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 195 PPMGSMPPSMAPPMGSMPPSMAPPMgsmPPSMAPPMGSMPPSLAPPMGSTPPSVAPPMGSTPPSLAPPMGSTPPSMAPSM 274
Cdd:PRK12323 433 LAAARQASARGPGGAPAPAPAPAAA---PAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASP 509
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1373882542 275 APPMGSTPPAMAPSSGETPPAMSPPSPPSGAVSPAPIMTP-PSGGTPPAPTVAP 327
Cdd:PRK12323 510 APAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPaPRAAAATEPVVAP 563
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
140-273 |
9.23e-08 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 54.34 E-value: 9.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 140 PPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPPstappmgstPPSMAPPMGSMPPSMAPPMGSMPPSMAPPM 219
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA---------PAAAASAPAAPPAAAPPAPVAAPAAAAPAA 436
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1373882542 220 GSMPPSMAPPMGSMPPS-LAPPMGSTPPSVAPPMGSTPPSLAPPMGSTPPSMAPS 273
Cdd:PRK14951 437 APAAAPAAVALAPAPPAqAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPT 491
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
104-277 |
9.31e-08 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 54.10 E-value: 9.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 104 ATPPPSAGTPPMTSPPMGSTPPSMTPpmgstppsiAPPMGSTPPSMAPPTGSTPPSTAPPMgSTPPSTAPPMGSTPPSTA 183
Cdd:PRK07994 362 AAPLPEPEVPPQSAAPAASAQATAAP---------TAAVAPPQAPAVPPPPASAPQQAPAV-PLPETTSQLLAARQQLQR 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 184 PPMGSTPPSMAPPmgsmPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSLAPpmgSTPPSVAPPMGSTPPSLAPPM 263
Cdd:PRK07994 432 AQGATKAKKSEPA----AASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKA---TNPVEVKKEPVATPKALKKAL 504
|
170
....*....|....
gi 1373882542 264 GSTPpsmAPSMAPP 277
Cdd:PRK07994 505 EHEK---TPELAAK 515
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
129-261 |
2.21e-07 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 53.18 E-value: 2.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 129 PPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPmgstPPSTAPPMGSTPPSTAPPMGSTPPSMAPPMGSMPPSMAPPm 208
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAA----PAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAA- 440
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1373882542 209 gsmPPSMAPPMGSMPPSMAPPMGSMPPSLAPPMGSTPPSVAPPMGSTPPSLAP 261
Cdd:PRK14951 441 ---APAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTP 490
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
104-185 |
2.70e-07 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 52.86 E-value: 2.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 104 ATPPPSAGTPPMTSPPMGSTPPSMTPPMGSTPPSIAPPMGSTP---PSMAPPTgSTPPSTAPPMGSTPPSTAPPM--GST 178
Cdd:PRK14971 388 AAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDppaAVPVNPP-STAPQAVRPAQFKEEKKIPVSkvSSL 466
|
....*..
gi 1373882542 179 PPSTAPP 185
Cdd:PRK14971 467 GPSTLRP 473
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
118-240 |
3.28e-07 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 52.41 E-value: 3.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 118 PPMGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGS--TPPSTAPPMGSTPPSTAPPMGSTPPSTAPPMGSTPPSMAP 195
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPaaAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAV 445
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1373882542 196 PMGSMPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSLAPP 240
Cdd:PRK14951 446 ALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTP 490
|
|
| Tryp_alpha_amyl |
pfam00234 |
Protease inhibitor/seed storage/LTP family; This family is composed of trypsin-alpha amylase ... |
26-97 |
3.39e-07 |
|
Protease inhibitor/seed storage/LTP family; This family is composed of trypsin-alpha amylase inhibitors, seed storage proteins and lipid transfer proteins from plants.
Pssm-ID: 425543 Cd Length: 74 Bit Score: 47.56 E-value: 3.39e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1373882542 26 CQAAAISLASCYSYASGPATTPPSDCCAPLRQVnanNPDCVCQAL-ANVGTSTAVNATKVRALPSDCGITVDY 97
Cdd:pfam00234 1 CGQVLLCLAPCLGYLQGGCQVPSQQCCSQLRQL---QAQCRCTAIrAIVLGIEGINPQAAASLPSMCGVNVPY 70
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
99-228 |
3.74e-07 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 52.41 E-value: 3.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 99 RCPGSATPPPSAGTPPMTSPPMGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPmgst 178
Cdd:PRK14951 365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAA---- 440
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1373882542 179 PPSTAPPMGSTPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSMAP 228
Cdd:PRK14951 441 APAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTP 490
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
151-291 |
4.53e-07 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 52.02 E-value: 4.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 151 PPTGSTPPSTAPPMGSTPPSTAPPMGSTPPSTAPPMGSTPPsmappmgsmPPSMAPPMgSMPPSMAPPmgsmPPSMAPPM 230
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA---------PAAAASAP-AAPPAAAPP----APVAAPAA 431
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1373882542 231 GSMPPSLAPPMGSTPPSVAPPMGSTPPSLAPPMGSTPPSMAPSMAPPMGSTPPAMAPSSGE 291
Cdd:PRK14951 432 AAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
160-264 |
4.56e-07 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 52.09 E-value: 4.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 160 TAPPmGSTPPSTAPPMGSTPPSTAPPMGSTPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMgsMPPSLAP 239
Cdd:PRK14971 368 DASG-GRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPV--NPPSTAP 444
|
90 100
....*....|....*....|....*
gi 1373882542 240 PmgSTPPSVAPPMGSTPPSLAPPMG 264
Cdd:PRK14971 445 Q--AVRPAQFKEEKKIPVSKVSSLG 467
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
138-331 |
5.59e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 51.91 E-value: 5.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 138 IAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPPSTAPpmGSTPPSMAPPMGSMPPSMAPPMGSMPPSMAP 217
Cdd:PRK07764 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAA--APAEASAAPAPGVAAPEHHPKHVAVPDASDG 665
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 218 PMGSMPPSMAPPMGSMPPSLAPPMGSTPPSVAPPMGSTPPSLAPPmgsTPPSMAPSMAPPMGSTPPAMAPSSGETPPAMS 297
Cdd:PRK07764 666 GDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPP---AGQADDPAAQPPQAAQGASAPSPAADDPVPLP 742
|
170 180 190
....*....|....*....|....*....|....
gi 1373882542 298 PPSPPSGAVSPAPIMTPPSGGTPPAPTVAPSSGE 331
Cdd:PRK07764 743 PEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPP 776
|
|
| PTZ00395 |
PTZ00395 |
Sec24-related protein; Provisional |
114-254 |
6.21e-07 |
|
Sec24-related protein; Provisional
Pssm-ID: 185594 [Multi-domain] Cd Length: 1560 Bit Score: 52.00 E-value: 6.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 114 PMTSPPmGSTPPSMTPPMGSTPPSiAPPMGSTPPSmAPPTGSTPPSTAPPmgSTPPSTAPPMGSTPPSTAPPMGSTPPSM 193
Cdd:PTZ00395 413 GYSNPG-NSNPGYNNAPNSNTPYN-NPPNSNTPYS-NPPNSNPPYSNLPY--SNTPYSNAPLSNAPPSSAKDHHSAYHAA 487
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1373882542 194 APPMGSMPPSMAPPMGSMpPSMAPPMGSMPPSMAPPMGSMPPSLApPMGSTPPSVAPPMGS 254
Cdd:PTZ00395 488 YQHRAANQPAANLPTANQ-PAANNFHGAAGNSVGNPFASRPFGSA-PYGGNAATTADPNGI 546
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
135-262 |
8.06e-07 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 51.25 E-value: 8.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 135 PPSIAPPMGSTPPSMAPPTGSTPPSTAPPmgsTPPSTAPPMGSTPPSTAPPMGSTPPSMAPPMGSMPPSMAPPMGSMPPS 214
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPV---AQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAP 442
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1373882542 215 MAPPMGSMPPSMAPPMGSMPPSLAPPMGSTPPSVAPPMGSTPPSLAPP 262
Cdd:PRK14951 443 AAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTP 490
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
171-277 |
8.26e-07 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 51.31 E-value: 8.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 171 TAPPmGSTPPSTAPPMGSTPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSLAPPmgsTPPSVAP 250
Cdd:PRK14971 368 DASG-GRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVP---VNPPSTA 443
|
90 100
....*....|....*....|....*..
gi 1373882542 251 PmGSTPPSLAPPMGSTPPSMAPSMAPP 277
Cdd:PRK14971 444 P-QAVRPAQFKEEKKIPVSKVSSLGPS 469
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
106-324 |
1.01e-06 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 51.22 E-value: 1.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 106 PPPSAGTPPMTSPPMGSTPPSMTPPMGS---TPPSIAPPMGSTP--PSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPP 180
Cdd:PHA03378 608 PPTTQSHIPETSAPRQWPMPLRPIPMRPlrmQPITFNVLVFPTPhqPPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPI 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 181 STAPPMGSTPPSMAPPMgsmPPSMAPPMGSMPPSMAPpmGSMPPSMAPPMGSMPPSLAPpmGSTPPSVAPPMGSTPPSLA 260
Cdd:PHA03378 688 QWAPGTMQPPPRAPTPM---RPPAAPPGRAQRPAAAT--GRARPPAAAPGRARPPAAAP--GRARPPAAAPGRARPPAAA 760
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1373882542 261 PPMgSTPPSMAPSMAPPMgsTPPAMAPSSGETPPAMSPPSPPSGAVSPAPIMTPPSGGTPPAPT 324
Cdd:PHA03378 761 PGR-ARPPAAAPGAPTPQ--PPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQGPT 821
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
112-196 |
1.06e-06 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 50.96 E-value: 1.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 112 TPPMTSPPMGSTPPSMTP-PMGSTPPSIAPPMgSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPPSTAPPMGSTP 190
Cdd:PRK14950 364 PAPQPAKPTAAAPSPVRPtPAPSTRPKAAAAA-NIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKP 442
|
....*.
gi 1373882542 191 PSMAPP 196
Cdd:PRK14950 443 KYTPPA 448
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
141-251 |
1.16e-06 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 50.93 E-value: 1.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 141 PMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPP-STAPPmGSTPPSMAPPMGSMPPSMAPPMgsMPPSMAPPm 219
Cdd:PRK14971 370 SGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAqPSAPQ-SATQPAGTPPTVSVDPPAAVPV--NPPSTAPQ- 445
|
90 100 110
....*....|....*....|....*....|..
gi 1373882542 220 gSMPPSMAPPMGSMPPSLappMGSTPPSVAPP 251
Cdd:PRK14971 446 -AVRPAQFKEEKKIPVSK---VSSLGPSTLRP 473
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
119-220 |
1.37e-06 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 50.54 E-value: 1.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 119 PMGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPPSTAPPMgsTPPSMAPPmg 198
Cdd:PRK14971 370 SGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPV--NPPSTAPQ-- 445
|
90 100
....*....|....*....|..
gi 1373882542 199 SMPPSMAPPMGSMPPSMAPPMG 220
Cdd:PRK14971 446 AVRPAQFKEEKKIPVSKVSSLG 467
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
147-288 |
2.70e-06 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 49.48 E-value: 2.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 147 PSMAPPTGSTPPSTAPPMGSTPPSTAP--PMGSTPPSTAPPMGSTPPSMAPPMgSMPPSMAPPMGSMPPSMAPPMGSMPP 224
Cdd:PRK07994 361 PAAPLPEPEVPPQSAAPAASAQATAAPtaAVAPPQAPAVPPPPASAPQQAPAV-PLPETTSQLLAARQQLQRAQGATKAK 439
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1373882542 225 SMAPPmgsmPPSLAPPMGSTPPSVAPPMGSTPPSLAPPMGSTPPSMAPSmAPPMGSTPPAMAPS 288
Cdd:PRK07994 440 KSEPA----AASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKAT-NPVEVKKEPVATPK 498
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
123-207 |
2.73e-06 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 49.42 E-value: 2.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 123 TPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPPSTAPPMGSTPPSMAPPMGSMPP 202
Cdd:PRK14950 364 PAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPK 443
|
....*
gi 1373882542 203 SMAPP 207
Cdd:PRK14950 444 YTPPA 448
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
135-327 |
3.98e-06 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 49.21 E-value: 3.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 135 PPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPPSTAPPMGSTPPSMAPPMGSMPPSMAPPMGSMPPS 214
Cdd:PRK07764 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGW 669
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 215 MAPPMGSMPPSMAPPMGSMPPSLAPPMGSTPPSVAPPMGSTPPSLAPPMGSTPPSMAPSMAPPMGSTPPAMAPSSGETPP 294
Cdd:PRK07764 670 PAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPP 749
|
170 180 190
....*....|....*....|....*....|...
gi 1373882542 295 AMSPPSPPSGAVSPAPIMTPPSGGTPPAPTVAP 327
Cdd:PRK07764 750 DPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEE 782
|
|
| nsLTP1 |
cd01960 |
nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, ... |
24-97 |
5.19e-06 |
|
nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Pssm-ID: 238926 Cd Length: 89 Bit Score: 44.65 E-value: 5.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 24 PDCQAAAISLASCYSYASGPATTPPSDCCAPLRQVN--ANNPD-------CVCQALANVGTstaVNATKVRALPSDCGIT 94
Cdd:cd01960 1 ISCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNglAKTTAdrqaacnCLKSAAAGISG---LNPGRAAGLPGKCGVS 77
|
...
gi 1373882542 95 VDY 97
Cdd:cd01960 78 IPY 80
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
92-397 |
5.39e-06 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 49.01 E-value: 5.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 92 GITVDYARCPGSATPPPSAGTPPMTSPPMGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPST 171
Cdd:PHA03307 41 GQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPT 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 172 APPmGSTPPSTAPPMGSTPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSLAPPMGSTPPSVAPP 251
Cdd:PHA03307 121 PPP-ASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPP 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 252 MGSTPPSLAPPMGSTPPSMAPSMAPPMGSTPPAMAPSSGETPPAMSPPSPPSGAVSPAPIMTPPSGGTPPAPTVAPSSGE 331
Cdd:PHA03307 200 AAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPS 279
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1373882542 332 MPPTPSGSMPSPPPESSPMAPSSGATPPGSSPTSPSEAPGSVNPSPANSPIGATNPPVTSPEAPGP 397
Cdd:PHA03307 280 SRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGP 345
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
102-214 |
5.71e-06 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 48.52 E-value: 5.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 102 GSATPPPSAGTPPMTSPPMGSTPPSMTPPMGSTPPSIAP--PMGSTPPSMAPPTGSTPPstAPPMGSTPPSTAPPMGSTP 179
Cdd:PRK14959 383 GSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPatPAPSAAPSPRVPWDDAPP--APPRSGIPPRPAPRMPEAS 460
|
90 100 110
....*....|....*....|....*....|....*
gi 1373882542 180 PSTAPPMGSTPPSMAPPMGSMPPSMAPPMGSMPPS 214
Cdd:PRK14959 461 PVPGAPDSVASASDAPPTLGDPSDTAEHTPSGPRT 495
|
|
| PTZ00395 |
PTZ00395 |
Sec24-related protein; Provisional |
133-273 |
6.63e-06 |
|
Sec24-related protein; Provisional
Pssm-ID: 185594 [Multi-domain] Cd Length: 1560 Bit Score: 48.53 E-value: 6.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 133 STPPSIAPPmGSTPPSMAPPTGSTPPSTaPPMGSTPPSTAPpmGSTPPSTAPPMGSTPPSmAPPMGSMPPSMAPPMGSMP 212
Cdd:PTZ00395 410 SNAGYSNPG-NSNPGYNNAPNSNTPYNN-PPNSNTPYSNPP--NSNPPYSNLPYSNTPYS-NAPLSNAPPSSAKDHHSAY 484
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1373882542 213 PSMAPPMGSMPPSMAPPMGSMpPSLAPPMGSTPPSVAPPMGSTPPSLAPPMGSTPPSMAPS 273
Cdd:PTZ00395 485 HAAYQHRAANQPAANLPTANQ-PAANNFHGAAGNSVGNPFASRPFGSAPYGGNAATTADPN 544
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
105-285 |
8.16e-06 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 48.14 E-value: 8.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 105 TPPPSAGTPPMTSPPMGSTPPSMTPPMGSTPPSIAPPMgstPPSMAPPTGSTPPSTAPpmGSTPPSTAPPMGSTPPSTAP 184
Cdd:PHA03378 667 TQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPM---RPPAAPPGRAQRPAAAT--GRARPPAAAPGRARPPAAAP 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 185 pmGSTPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSLAPPMGSTPPSVAPPMGSTPPSLAPPMG 264
Cdd:PHA03378 742 --GRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQG 819
|
170 180
....*....|....*....|.
gi 1373882542 265 STPPSMAPSMAPPMGSTPPAM 285
Cdd:PHA03378 820 PTKQILRQLLTGGVKRGRPSL 840
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
130-292 |
8.75e-06 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 47.94 E-value: 8.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 130 PMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPmgstPPSTAPPMGSTPPSTAPPMgSTPPSMAPPMGSMPPSMAPPMG 209
Cdd:PRK07994 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPP----QAPAVPPPPASAPQQAPAV-PLPETTSQLLAARQQLQRAQGA 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 210 SMPPSMAPPMGSMPPSMAPPMGSMPP-SLAPPMGSTPPSVAPPMG--STPPSLAPPMGSTPPSMAPSmAPPMGSTPPAMA 286
Cdd:PRK07994 436 TKAKKSEPAAASRARPVNSALERLASvRPAPSALEKAPAKKEAYRwkATNPVEVKKEPVATPKALKK-ALEHEKTPELAA 514
|
....*.
gi 1373882542 287 PSSGET 292
Cdd:PRK07994 515 KLAAEA 520
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
101-185 |
1.26e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 47.50 E-value: 1.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 101 PGSATPPPSAGTPPMTSPPMGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPP 180
Cdd:PRK14950 364 PAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPK 443
|
....*
gi 1373882542 181 STAPP 185
Cdd:PRK14950 444 YTPPA 448
|
|
| PTZ00395 |
PTZ00395 |
Sec24-related protein; Provisional |
67-210 |
1.38e-05 |
|
Sec24-related protein; Provisional
Pssm-ID: 185594 [Multi-domain] Cd Length: 1560 Bit Score: 47.76 E-value: 1.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 67 CQALANVGTSTAV--NATKVRALPSDCGIT-VDYARCPGSATP---PPSAGTP----PMTSPPMGSTPPSMTpPMGSTPP 136
Cdd:PTZ00395 391 CAAYSNAAQSNAAqsNAGFSNAGYSNPGNSnPGYNNAPNSNTPynnPPNSNTPysnpPNSNPPYSNLPYSNT-PYSNAPL 469
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1373882542 137 SIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTP----PSTAPPMGSTPPSTAPPMGSTPPSMAPPMGSmPPSMAPPMGS 210
Cdd:PTZ00395 470 SNAPPSSAKDHHSAYHAAYQHRAANQPAANLPtanqPAANNFHGAAGNSVGNPFASRPFGSAPYGGN-AATTADPNGI 546
|
|
| LTP_2 |
pfam14368 |
Probable lipid transfer; The members of this family are probably involved in lipid transfer. ... |
19-98 |
1.62e-05 |
|
Probable lipid transfer; The members of this family are probably involved in lipid transfer. The family has several highly conserved cysteines, paired in various ways.
Pssm-ID: 433909 Cd Length: 100 Bit Score: 43.62 E-value: 1.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 19 SAQFTPDCQAAAIS-LASCYSYASGP--ATTPPSDCCAPLRQVNANNPDCVCQALANVG-TSTAVNATKVRALPSDCGIT 94
Cdd:pfam14368 14 PAPAAASCTLSMLSgLSPCLPYLTGTpaATAPSPACCGALKSAVSTDVTCLCALVTAPLpIGFPINVTRALALPRACGVK 93
|
....
gi 1373882542 95 VDYA 98
Cdd:pfam14368 94 TPPS 97
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
101-186 |
1.68e-05 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 47.19 E-value: 1.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 101 PGSATPPPSAGTPPmtsPPMGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPP 180
Cdd:PRK12270 38 PGSTAAPTAAAAAA---AAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVE 114
|
....*.
gi 1373882542 181 STAPPM 186
Cdd:PRK12270 115 DEVTPL 120
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
137-229 |
1.69e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 47.11 E-value: 1.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 137 SIAPPmgsTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPPSTAPPMGSTPPSMAPPMGSMPPSMAPPMGSMPPSMA 216
Cdd:PRK14950 359 LLVPV---PAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAA 435
|
90
....*....|...
gi 1373882542 217 PPMGSMPPSMAPP 229
Cdd:PRK14950 436 IPVDEKPKYTPPA 448
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
121-229 |
1.82e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 47.08 E-value: 1.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 121 GSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPPSTAPPMGStpPSMAPPMGSM 200
Cdd:PRK14971 366 GDDASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPA--AVPVNPPSTA 443
|
90 100 110
....*....|....*....|....*....|
gi 1373882542 201 PPSMAPPMGSMPPSMAPP-MGSMPPSMAPP 229
Cdd:PRK14971 444 PQAVRPAQFKEEKKIPVSkVSSLGPSTLRP 473
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
169-327 |
1.95e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 46.78 E-value: 1.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 169 PSTAPPMGSTPPSTAPPMGSTPPSMAPpmgsmPPSMAPPMGSMPPSMAPPMGSMPPSMAPpmgsmPPSLAPPMGSTPPSV 248
Cdd:PRK07994 361 PAAPLPEPEVPPQSAAPAASAQATAAP-----TAAVAPPQAPAVPPPPASAPQQAPAVPL-----PETTSQLLAARQQLQ 430
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1373882542 249 APPmGSTPPSLAPPMGSTPPSMAPSMAPPMGSTPPAMAPSSGETPPAMSPPSPPSGAVSPApimtPPSGGTPPAPTVAP 327
Cdd:PRK07994 431 RAQ-GATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVK----KEPVATPKALKKAL 504
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
134-218 |
1.97e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 46.73 E-value: 1.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 134 TPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPPSTAPPMGSTPPSMAPPMGSMPPSMAPPMGSMPP 213
Cdd:PRK14950 364 PAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPK 443
|
....*
gi 1373882542 214 SMAPP 218
Cdd:PRK14950 444 YTPPA 448
|
|
| AAI |
smart00499 |
Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain ... |
26-100 |
2.30e-05 |
|
Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family;
Pssm-ID: 214698 Cd Length: 79 Bit Score: 42.36 E-value: 2.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 26 CQAAAISLASCYSYASG--PATTPPSDCCAPLRQVNanNPDCVCQALANVGTST----AVNATKVRALPSDCGITVDYAR 99
Cdd:smart00499 1 CGQVLLQLAPCLSYLVGgsRGAPPSQQCCSQLRGLN--SAQCRCLALRAAVLGIleipGLNAQNAASLPSACGVPPPYTD 78
|
.
gi 1373882542 100 C 100
Cdd:smart00499 79 C 79
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
143-258 |
2.40e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 46.60 E-value: 2.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 143 GSTPP--SMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPPSTAPPmGSTPPSMAP----PMGSMPPsmAPPMGSMPPSMA 216
Cdd:PRK14959 377 GASAPsgSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAP-ATPAPSAAPsprvPWDDAPP--APPRSGIPPRPA 453
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1373882542 217 PPMGSMPPSMAPPMGSMPPSLAPPMGSTPPSVAPPMGSTPPS 258
Cdd:PRK14959 454 PRMPEASPVPGAPDSVASASDAPPTLGDPSDTAEHTPSGPRT 495
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
205-411 |
3.02e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 46.41 E-value: 3.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 205 APPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSlAPPMGSTPPSVAPPMGSTPPSLAPPMGSTPPSMAPSMAPPMGSTPPA 284
Cdd:PRK12323 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPA-APAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 285 MAPSS---GETPPAMSPPSPPSGAVSPAPIMTPPSGGTPPAPTVAPSSGEMPPTPSGSMPSPPPESSPMAPSSGATPPGS 361
Cdd:PRK12323 452 PAPAAapaAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPAT 531
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1373882542 362 SPTSPSEAPGSVNPSPANSPIGATNPPVTSPEAPGPVAPSNNAASMGASW 411
Cdd:PRK12323 532 ADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDW 581
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
98-397 |
3.03e-05 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 46.32 E-value: 3.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 98 ARCPGSATPPPSAGTPPMTSPPMGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTP-PSTAPPMG 176
Cdd:PHA03307 86 STPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGaSPAAVASD 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 177 STPPSTAPPMGSTPPSMAPPMGSMPPsmaPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSLAPPMGSTPPSVAPPMGSTP 256
Cdd:PHA03307 166 AASSRQAALPLSSPEETARAPSSPPA---EPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSS 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 257 PSLAPPMGSTPPSMAPSMAPPMGSTPPAMAPSSGETPPAMSPPSPPSGAVSPAPIMTPPSGGTPPAPTVAPSSGEMPPTP 336
Cdd:PHA03307 243 ESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSR 322
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1373882542 337 S--GSMPSPPPESSPMAPSSGATPPGSSPTSPSEAPGSVNPSPANSPIGATNPPVTSPEAPGP 397
Cdd:PHA03307 323 EssSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRP 385
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
101-286 |
4.01e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 46.00 E-value: 4.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 101 PGSATPPPSAGTPPMTSPPMGSTPPSMTPPmGSTPPSIAPPMGSTPPSMAPPTGSTPPstAPPMGSTPPSTAPPMGSTPP 180
Cdd:PRK07003 368 PGGGVPARVAGAVPAPGARAAAAVGASAVP-AVTAVTGAAGAALAPKAAAAAAATRAE--APPAAPAPPATADRGDDAAD 444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 181 STAPPMGSTPPSMAPPMGSMPPSMAPPmgSMPPSMAPPMGSMPPSM----APPMGSMPPSLAPPMGSTPPSVAPPMGSTP 256
Cdd:PRK07003 445 GDAPVPAKANARASADSRCDERDAQPP--ADSGSASAPASDAPPDAafepAPRAAAPSAATPAAVPDARAPAAASREDAP 522
|
170 180 190
....*....|....*....|....*....|
gi 1373882542 257 PSLAPPMGSTPPSMAPSMAPPMGSTPPAMA 286
Cdd:PRK07003 523 AAAAPPAPEARPPTPAAAAPAARAGGAAAA 552
|
|
| PABP-1234 |
TIGR01628 |
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
186-287 |
5.07e-05 |
|
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.
Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 45.57 E-value: 5.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 186 MGSTPPSMAPPMGS-MPPSM-APPMGSM-PPSMAPPMGSMPPSMAPPMGSMPPSLAP-PMGSTPpsvaPPMGSTPPSLAP 261
Cdd:TIGR01628 376 MQLQPRMRQLPMGSpMGGAMgQPPYYGQgPQQQFNGQPLGWPRMSMMPTPMGPGGPLrPNGLAP----MNAVRAPSRNAQ 451
|
90 100
....*....|....*....|....*.
gi 1373882542 262 PMGStPPSMAPSMAPPMGSTPPAMAP 287
Cdd:TIGR01628 452 NAAQ-KPPMQPVMYPPNYQSLPLSQD 476
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
123-213 |
7.03e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 45.19 E-value: 7.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 123 TPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGST-PPSTAPPMgstpPSTAPPMGSTPPSTAPPMGSTPPSMAPPMGSMP 201
Cdd:PRK14950 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAaNIPPKEPV----RETATPPPVPPRPVAPPVPHTPESAPKLTRAAI 436
|
90
....*....|..
gi 1373882542 202 PSMAPPMGSMPP 213
Cdd:PRK14950 437 PVDEKPKYTPPA 448
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
88-410 |
8.76e-05 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 45.16 E-value: 8.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 88 PSDCGITVDYARCPGSATPPPSAGTPPMTSPPMGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGST 167
Cdd:PHA03307 46 DSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPAS 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 168 PPSTAPPMGSTPPSTAPPMGSTPPSMAPPMGSMPPsmAPPMGSMPPSMAPPMGSMPPSMAPPMGsmPPSLAPPMGSTPPS 247
Cdd:PHA03307 126 PPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPA--AVASDAASSRQAALPLSSPEETARAPS--SPPAEPPPSTPPAA 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 248 VAPPMGSTPPSLAPPMGSTPPSMAPSMAPPMGSTPPAMAPSSGETPPAMSPPSPPSGAVSPAPIMTPPSGGTPPAPTVAP 327
Cdd:PHA03307 202 ASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSR 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 328 SSGEMPPTPSGSMPSPPPESSPMAPSSGATPPGSSPTSPSEAPGSVNPSPANSPIGATNPPVTSPEAPGPVAPSNNAASM 407
Cdd:PHA03307 282 PGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPAD 361
|
...
gi 1373882542 408 GAS 410
Cdd:PHA03307 362 PSS 364
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
195-324 |
8.80e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 44.71 E-value: 8.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 195 PPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSMAPPmgsmPPSLAPPMGSTPPSVAPPMGSTPPSLAPPMGSTPPSMAPSM 274
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAA----PAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAA 441
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1373882542 275 APPMGSTPPAMAPSSGETPPAMSPPSPPSGAVSPAPIMTPPSGGTPPAPT 324
Cdd:PRK14951 442 PAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPT 491
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
128-247 |
8.99e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 44.67 E-value: 8.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 128 TPPMGSTPPSiapPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAP--PMGSTPPSTAPPMGSTPPsmAPPMGSMPPSMA 205
Cdd:PRK14959 379 SAPSGSAAEG---PASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPatPAPSAAPSPRVPWDDAPP--APPRSGIPPRPA 453
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1373882542 206 PPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSLAPPMGSTPPS 247
Cdd:PRK14959 454 PRMPEASPVPGAPDSVASASDAPPTLGDPSDTAEHTPSGPRT 495
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
98-196 |
1.03e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 44.71 E-value: 1.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 98 ARCPGSATPPPSAGTPPMTSPPMGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGS 177
Cdd:PRK14951 392 APVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPA 471
|
90
....*....|....*....
gi 1373882542 178 TPPSTAPPMGSTPPSMAPP 196
Cdd:PRK14951 472 VASAAPAPAAAPAAARLTP 490
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
102-225 |
1.05e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 44.67 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 102 GSATPPPSAGTPPMTSPPMGSTP-PSMTPPMGSTPPSIAPPMGSTPPSMAPptgSTPPSTAPPMGSTPPstAPPMGSTPP 180
Cdd:PRK14959 376 GGASAPSGSAAEGPASGGAATIPtPGTQGPQGTAPAAGMTPSSAAPATPAP---SAAPSPRVPWDDAPP--APPRSGIPP 450
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1373882542 181 STAPPMGSTPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPS 225
Cdd:PRK14959 451 RPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAEHTPSGPRT 495
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
102-289 |
1.46e-04 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 44.37 E-value: 1.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 102 GSATPPPSAGTPPMTSPPMGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPM-GSTPP 180
Cdd:pfam03154 179 GAASPPSPPPPGTTQAATAGPTPSAPSVPPQGSPATSQPPNQTQSTAAPHTLIQQTPTLHPQRLPSPHPPLQPMtQPPPP 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 181 STAPPMGSTPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSLAPPMGSTPPSVAPPMGSTPPSLA 260
Cdd:pfam03154 259 SQVSPQPLPQPSLHGQMPPMPHSLQTGPSHMQHPVPPQPFPLTPQSSQSQVPPGPSPAAPGQSQQRIHTPPSQSQLQSQQ 338
|
170 180 190
....*....|....*....|....*....|...
gi 1373882542 261 P----PMGSTPPSMAPSMAPPMGSTPPAMAPSS 289
Cdd:pfam03154 339 PpreqPLPPAPLSMPHIKPPPTTPIPQLPNPQS 371
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
106-291 |
1.85e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 43.68 E-value: 1.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 106 PPPSAGTPPMTSPPMGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPStAPPMGSTPPSTAPP 185
Cdd:PRK07003 360 PAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAE-APPAAPAPPATADR 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 186 MGSTPPSMAPPMGSMPPSMAPPMGSMPPSMAPPmgSMPPSMAPPMGSMPPslaPPMGSTPPSVAPPMGSTPPSLAPPMGS 265
Cdd:PRK07003 439 GDDAADGDAPVPAKANARASADSRCDERDAQPP--ADSGSASAPASDAPP---DAAFEPAPRAAAPSAATPAAVPDARAP 513
|
170 180
....*....|....*....|....*.
gi 1373882542 266 TPPSMAPSMAPPMGSTPPAMAPSSGE 291
Cdd:PRK07003 514 AAASREDAPAAAAPPAPEARPPTPAA 539
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
98-218 |
1.90e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 43.82 E-value: 1.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 98 ARCPGSATPPPSAGTPPMTSPPMGSTPPSMTPPmgstPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGS 177
Cdd:PRK07764 391 AGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAP----APAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQP 466
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1373882542 178 TPPSTAPPMGSTPPSMAPPmgSMPPSMAPPMGSMPPSMAPP 218
Cdd:PRK07764 467 APAPAAAPEPTAAPAPAPP--AAPAPAAAPAAPAAPAAPAG 505
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
116-208 |
2.04e-04 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 43.73 E-value: 2.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 116 TSPPMGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPPSTAPPMGSTPPSMAP 195
Cdd:PRK12270 39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVT 118
|
90
....*....|...
gi 1373882542 196 PMGSMPPSMAPPM 208
Cdd:PRK12270 119 PLRGAAAAVAKNM 131
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
111-195 |
2.30e-04 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 43.73 E-value: 2.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 111 GTPPMTSPPMGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPmgSTPPSTAPPMGSTP 190
Cdd:PRK12270 37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPP--AAAAAAAPAAAAVE 114
|
....*
gi 1373882542 191 PSMAP 195
Cdd:PRK12270 115 DEVTP 119
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
101-231 |
2.44e-04 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 43.52 E-value: 2.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 101 PGSATPPPSAGTP--PMTSPPMGSTPPSMTPpmGSTPPSIAPPMGSTPPSMAPptGSTPPSTAPPMGSTPPSTAPPMGST 178
Cdd:PHA03378 691 PGTMQPPPRAPTPmrPPAAPPGRAQRPAAAT--GRARPPAAAPGRARPPAAAP--GRARPPAAAPGRARPPAAAPGRARP 766
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1373882542 179 PPSTAPPMGSTPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMG 231
Cdd:PHA03378 767 PAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQG 819
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
146-241 |
2.44e-04 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 43.73 E-value: 2.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 146 PPSMAPPTGSTPPSTAPPMGSTPPSTAPPmgSTPPSTAPPMGSTPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPS 225
Cdd:PRK12270 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKA--PAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVED 115
|
90
....*....|....*.
gi 1373882542 226 MAPPMGSMPPSLAPPM 241
Cdd:PRK12270 116 EVTPLRGAAAAVAKNM 131
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
103-328 |
2.78e-04 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 43.22 E-value: 2.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 103 SATPPPSAGTPPMTSPPMGSTPPSMTPPMGSTPPS---IAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTP 179
Cdd:pfam03154 307 SQVPPGPSPAAPGQSQQRIHTPPSQSQLQSQQPPReqpLPPAPLSMPHIKPPPTTPIPQLPNPQSHKHPPHLSGPSPFQM 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 180 PSTAPPMGSTPPSMAPPMGSMPPSMAPPMGSMPPSMAPPmgsmPPSMAPPMGSMPPSLAPPMGSTPPSVAPPMGSTPPSL 259
Cdd:pfam03154 387 NSNLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQQLP----PPPAQPPVLTQSQSLPPPAASHPPTSGLHQVPSQSPF 462
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1373882542 260 AP-------PMGSTPPSMAPSMAPPMGST---PPAMAPSSGETPPAMSPPSPPSGAVSPAPIMTPPSGGTPPAPTVAPS 328
Cdd:pfam03154 463 PQhpfvpggPPPITPPSGPPTSTSSAMPGiqpPSSASVSSSGPVPAAVSCPLPPVQIKEEALDEAEEPESPPPPPRSPS 541
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
126-219 |
2.83e-04 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 43.34 E-value: 2.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 126 SMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPPSTAPPMGSTPPSMAPPMGSMPPSMA 205
Cdd:PRK12270 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
|
90
....*....|....
gi 1373882542 206 PPMGSMPPSMAPPM 219
Cdd:PRK12270 118 TPLRGAAAAVAKNM 131
|
|
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
85-291 |
3.27e-04 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 42.89 E-value: 3.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 85 RALPSDCG------ITVDyarcPGSATPPPSAGTPPMTSPPMGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPP 158
Cdd:PRK14086 72 ETLSRELGrpiriaITVD----PSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYP 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 159 STAPPmgsTPPSTAPPMGSTPPSTAPPMGSTPPSMAPPmgsmPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSLA 238
Cdd:PRK14086 148 AYQQR---PEPGAWPRAADDYGWQQQRLGFPPRAPYAS----PASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDWDR 220
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1373882542 239 PPMGSTPPSVAPPMGSTPPSLAPPMGSTPPSMAPSMAPPMGSTP---PAMAPSSGE 291
Cdd:PRK14086 221 PRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRPSAPGPLaaqPAPAPGPGE 276
|
|
| PLN02217 |
PLN02217 |
probable pectinesterase/pectinesterase inhibitor |
101-205 |
3.30e-04 |
|
probable pectinesterase/pectinesterase inhibitor
Pssm-ID: 215130 [Multi-domain] Cd Length: 670 Bit Score: 43.15 E-value: 3.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 101 PGSATP---------PPSAGTPPMTSPPMGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPST 171
Cdd:PLN02217 551 PGKGVPyipglfagnPGSTNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKIVSPSTSPPASHLGSPS 630
|
90 100 110
....*....|....*....|....*....|....
gi 1373882542 172 APPMGSTPPSTAPPMGSTPPSMAPPMGSMPPSMA 205
Cdd:PLN02217 631 TTPSSPESSIKVASTETASPESSIKVASTESSVS 664
|
|
| half-pint |
TIGR01645 |
poly-U binding splicing factor, half-pint family; The proteins represented by this model ... |
102-206 |
3.45e-04 |
|
poly-U binding splicing factor, half-pint family; The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Pssm-ID: 130706 [Multi-domain] Cd Length: 612 Bit Score: 42.75 E-value: 3.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 102 GSATPPPSAGTPPMtspPMGSTPPSM-TPPMGSTPPSIAPPMGSTPPS---MAPPTGSTPPSTAPPMGSTPPSTAPPMGS 177
Cdd:TIGR01645 320 GAAVLGPRAQSPAT---PSSSLPTDIgNKAVVSSAKKEAEEVPPLPQAapaVVKPGPMEIPTPVPPPGLAIPSLVAPPGL 396
|
90 100
....*....|....*....|....*....
gi 1373882542 178 TPPSTAPPMGSTPPSMAPPMGSMPPSMAP 206
Cdd:TIGR01645 397 VAPTEINPSFLASPRKKMKREKLPVTFGA 425
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
141-246 |
3.51e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 42.87 E-value: 3.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 141 PMGSTPPSMAPPTGSTPPSTAPPMGS-TPPSTAPPMGSTPPSTAPPmgsTPPSMAPPMGSMPPSMAPPMGSMPPSMAPPM 219
Cdd:PRK14950 345 SYGQLPLELAVIEALLVPVPAPQPAKpTAAAPSPVRPTPAPSTRPK---AAAAANIPPKEPVRETATPPPVPPRPVAPPV 421
|
90 100
....*....|....*....|....*..
gi 1373882542 220 GSMPPSMAPPMGSMPPSLAPPMGSTPP 246
Cdd:PRK14950 422 PHTPESAPKLTRAAIPVDEKPKYTPPA 448
|
|
| PLN02217 |
PLN02217 |
probable pectinesterase/pectinesterase inhibitor |
153-249 |
3.85e-04 |
|
probable pectinesterase/pectinesterase inhibitor
Pssm-ID: 215130 [Multi-domain] Cd Length: 670 Bit Score: 42.77 E-value: 3.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 153 TGSTPPSTAPPMGSTPPSTAPPMgSTPPSTAPPMGSTPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGS 232
Cdd:PLN02217 569 TNSTPTGSAASSNTTFSSDSPST-VVAPSTSPPAGHLGSPPATPSKIVSPSTSPPASHLGSPSTTPSSPESSIKVASTET 647
|
90
....*....|....*..
gi 1373882542 233 MPPSLAPPMGSTPPSVA 249
Cdd:PLN02217 648 ASPESSIKVASTESSVS 664
|
|
| half-pint |
TIGR01645 |
poly-U binding splicing factor, half-pint family; The proteins represented by this model ... |
126-289 |
4.00e-04 |
|
poly-U binding splicing factor, half-pint family; The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Pssm-ID: 130706 [Multi-domain] Cd Length: 612 Bit Score: 42.75 E-value: 4.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 126 SMTPPMGSTPPSiapPMGSTPPSMAPPTGStppSTAPPMGSTPPSTAPPMGSTPPSTAPPMGSTPPSM-APPMGSMPPSM 204
Cdd:TIGR01645 281 CVTPPDALLQPA---TVSAIPAAAAVAAAA---ATAKIMAAEAVAGAAVLGPRAQSPATPSSSLPTDIgNKAVVSSAKKE 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 205 APPMGSMPPS---MAPPMGSMPPSMAPPMGSMPPSLAPPMGSTPPSVAPPMGSTPPSLAPPMGSTPPSMAPSMAPPMGST 281
Cdd:TIGR01645 355 AEEVPPLPQAapaVVKPGPMEIPTPVPPPGLAIPSLVAPPGLVAPTEINPSFLASPRKKMKREKLPVTFGALDDTLAWKE 434
|
....*...
gi 1373882542 282 PPAMAPSS 289
Cdd:TIGR01645 435 PSKEDQTS 442
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
139-265 |
4.92e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 42.67 E-value: 4.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 139 APPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPPSTAPPMGSTPPSMAPPMGSMPPSMAPPMGSMPPSMAPP 218
Cdd:PRK07764 385 LGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSA 464
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1373882542 219 MGSMPPSMAPPMGSMPPSLAPPMGSTPPSVAPPMGSTPPSLAPPMGS 265
Cdd:PRK07764 465 QPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAAT 511
|
|
| PRK10856 |
PRK10856 |
cytoskeleton protein RodZ; |
109-192 |
5.22e-04 |
|
cytoskeleton protein RodZ;
Pssm-ID: 236776 [Multi-domain] Cd Length: 331 Bit Score: 41.94 E-value: 5.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 109 SAGTPPMTSPPmgSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPPSTAPPMGS 188
Cdd:PRK10856 168 TTTDPATTPAP--AAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGVS 245
|
....
gi 1373882542 189 TPPS 192
Cdd:PRK10856 246 TPAA 249
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
69-292 |
5.28e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 42.53 E-value: 5.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 69 ALANVGTSTAVNATKVRALPSDCGITVDYARCPGSATPPPSAGTPPMTSPPMGSTPPSMTPPMGSTPPSIAPPMGSTPPS 148
Cdd:PRK07003 387 AAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDER 466
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 149 MAPPTGSTPPSTAPPMGSTPPST---APPMGSTPPSTAPPMGSTPPSMAPPMGSMPPSMAPPMGSMPPsmAPPMGSMPPS 225
Cdd:PRK07003 467 DAQPPADSGSASAPASDAPPDAAfepAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARP--PTPAAAAPAA 544
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1373882542 226 MAPPMGSMPPSL-----------APPMGSTPPSVAPPMGSTPPSLAPPMGSTPPSMAPSMAPPMGSTPPAMAPSSGET 292
Cdd:PRK07003 545 RAGGAAAALDVLrnagmrvssdrGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAES 622
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
101-407 |
5.60e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 42.28 E-value: 5.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 101 PGSATPPPSAGTPPMTSPPMGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPP 180
Cdd:PRK07764 406 PAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPP 485
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 181 STAPPMGSTPPSMAPPMGSMPPSMA--------------------------------------------PPMGSM----- 211
Cdd:PRK07764 486 AAPAPAAAPAAPAAPAAPAGADDAAtlrerwpeilaavpkrsrktwaillpeatvlgvrgdtlvlgfstGGLARRfaspg 565
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 212 ------------------------PPSMAPPMGSMPPSMAPPMGSMPPSLAPPMGSTPPSVAPPMGSTPPSLAPPMGSTP 267
Cdd:PRK07764 566 naevlvtalaeelggdwqveavvgPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAP 645
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 268 PSMAPSMAPPMGSTPPAMAPSSGETPPAMSPPSPPSGAVSPAPIMTPPSGGTPPAPTVAPSSGEMPPTPSGSMPSPPPES 347
Cdd:PRK07764 646 GVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAA 725
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 348 SPMAPSSGATPPGSSPTSPSEAPGSVNPSPANSPIGATNPPVTSPEAPGPVAPSNNAASM 407
Cdd:PRK07764 726 QGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEM 785
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
223-421 |
5.71e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 42.17 E-value: 5.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 223 PPSMAPPMGSMPPSLAPPMGSTPPSVAPPMGSTPPSLAPPMGSTPPSMAPSMAPPMGSTPPAMAPSSGETPPAMSPPSPP 302
Cdd:PRK12323 375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAP 454
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 303 SGAVSPAPIMTPPSGGTPPAPTVAPSSGEMPPTPSGSMPSPPPESSPMAPSSGATPPGSSPTSPSEAPGSVNPSPANSPI 382
Cdd:PRK12323 455 AAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADP 534
|
170 180 190
....*....|....*....|....*....|....*....
gi 1373882542 383 GATNPPVTSPEAPGPVAPSNNAASMGASWTVGVAAAVAL 421
Cdd:PRK12323 535 DDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGL 573
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
182-290 |
6.32e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 42.07 E-value: 6.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 182 TAPPmGSTPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSmappmGSMPPSLAPPMGsTPPSVAPPMGStpPSLAP 261
Cdd:PRK14971 368 DASG-GRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQ-----PSAPQSATQPAG-TPPTVSVDPPA--AVPVN 438
|
90 100
....*....|....*....|....*....
gi 1373882542 262 PMGSTPPSMAPSMAPPMGSTPPAMAPSSG 290
Cdd:PRK14971 439 PPSTAPQAVRPAQFKEEKKIPVSKVSSLG 467
|
|
| PspC_subgroup_2 |
NF033839 |
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
101-277 |
6.43e-04 |
|
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.
Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 42.06 E-value: 6.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 101 PGSATPPPSAGTPPMTSPPMGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPP 180
Cdd:NF033839 305 PEKKEVKPEPETPKPEVKPQLEKPKPEVKPQPEKPKPEVKPQLETPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPETPK 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 181 STAPPMGSTP-PSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSLAPPMGSTPPSVAPPMGSTPPSL 259
Cdd:NF033839 385 PEVKPQPEKPkPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPETPKPEV 464
|
170
....*....|....*...
gi 1373882542 260 APPMGSTPPSMAPSMAPP 277
Cdd:NF033839 465 KPQPEKPKPEVKPQPEKP 482
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
123-287 |
7.64e-04 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 42.06 E-value: 7.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 123 TPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPPSTAPPmgsTPPSMAPPMGSMPP 202
Cdd:pfam03154 178 SGAASPPSPPPPGTTQAATAGPTPSAPSVPPQGSPATSQPPNQTQSTAAPHTLIQQTPTLHPQ---RLPSPHPPLQPMTQ 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 203 SMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSLAPPMGSTPPSVAPPMGSTPPSLAPPMGSTPPSMAPSMAPPMGSTP 282
Cdd:pfam03154 255 PPPPSQVSPQPLPQPSLHGQMPPMPHSLQTGPSHMQHPVPPQPFPLTPQSSQSQVPPGPSPAAPGQSQQRIHTPPSQSQL 334
|
....*
gi 1373882542 283 PAMAP 287
Cdd:pfam03154 335 QSQQP 339
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
178-262 |
8.02e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 41.72 E-value: 8.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 178 TPPSTAPPMGSTPPSMAP-PMGSMPPSMAPPMgSMPPSMAPPMGSMPPSMAPPMGSMPPSLAPPMGSTPPSVAPPMGSTP 256
Cdd:PRK14950 364 PAPQPAKPTAAAPSPVRPtPAPSTRPKAAAAA-NIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKP 442
|
....*.
gi 1373882542 257 PSLAPP 262
Cdd:PRK14950 443 KYTPPA 448
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
218-331 |
8.19e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 41.68 E-value: 8.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 218 PMGSMPPSMAPPMGSMPPSLAPPMGSTPPSVAPPMGSTPPslappmgstPPSMAPSMAPPMGSTPPAMAPSSgetppams 297
Cdd:PRK14971 370 SGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAA---------QPSAPQSATQPAGTPPTVSVDPP-------- 432
|
90 100 110
....*....|....*....|....*....|....
gi 1373882542 298 ppsppsgavspAPIMTPPSGGTPPAPTVAPSSGE 331
Cdd:PRK14971 433 -----------AAVPVNPPSTAPQAVRPAQFKEE 455
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
206-328 |
8.95e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 41.62 E-value: 8.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 206 PPMGSMPPSMAPPMGSMPPSMAPPMGSMPP--SLAPPMGSTPPSVAPPMGSTPPSLAPPMGSTPPSMAPSMAPPMGSTPP 283
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAqaAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAV 445
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1373882542 284 AMAPSSgetppamsPPSPPSGAVSPAPIMTPPSGGTPPAPTVAPS 328
Cdd:PRK14951 446 ALAPAP--------PAQAAPETVAIPVRVAPEPAVASAAPAPAAA 482
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
189-278 |
8.97e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 41.33 E-value: 8.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 189 TPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMgsmPPSMAPPMGSMPPSLAPPMGSTPPSVAPPMGSTPPSLAP-PMGSTP 267
Cdd:PRK14950 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKA---AAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKlTRAAIP 437
|
90
....*....|.
gi 1373882542 268 PSMAPSMAPPM 278
Cdd:PRK14950 438 VDEKPKYTPPA 448
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
135-240 |
1.00e-03 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 41.41 E-value: 1.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 135 PPSIAPPMGSTPPSMAPPTGSTPPSTAPPmgSTPPSTAPPMGSTPPSTAPPMGSTPPSMAPPMGSMPPSMAPPMGSMPPS 214
Cdd:PRK12270 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKA--PAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVED 115
|
90 100
....*....|....*....|....*.
gi 1373882542 215 MAPPMGSMPPSMAPPMGSmppSLAPP 240
Cdd:PRK12270 116 EVTPLRGAAAAVAKNMDA---SLEVP 138
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
94-320 |
1.08e-03 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 41.61 E-value: 1.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 94 TVDYARCPGSATPPPSAGTPPMTSPPMgstpPSMTPPMGSTPPSIAPPMGSTPPSMAPPtgSTPPSTAPPMGSTPPSTAP 173
Cdd:PRK10263 357 TVAWQPVPGPQTGEPVIAPAPEGYPQQ----SQYAQPAVQYNEPLQQPVQPQQPYYAPA--AEQPAQQPYYAPAPEQPAQ 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 174 PMGSTPPSTAPPMGSTPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSlaPPMGSTPPSvAPPMG 253
Cdd:PRK10263 431 QPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPE--PVVEETKPA-RPPLY 507
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 254 -----------------------STPPSLAPPMGSTPPSMAPSMAPPMGSTPPAMAPSSGetpPAMSPPSPPSGAVSPAP 310
Cdd:PRK10263 508 yfeeveekrarereqlaawyqpiPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASG---VKKATLATGAAATVAAP 584
|
250
....*....|
gi 1373882542 311 IMTPPSGGTP 320
Cdd:PRK10263 585 VFSLANSGGP 594
|
|
| PLN02217 |
PLN02217 |
probable pectinesterase/pectinesterase inhibitor |
108-211 |
1.22e-03 |
|
probable pectinesterase/pectinesterase inhibitor
Pssm-ID: 215130 [Multi-domain] Cd Length: 670 Bit Score: 41.23 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 108 PSAGTPPMTSPPMGSTPPSMTPPMGSTPPsiappmGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPPSTAPPMG 187
Cdd:PLN02217 551 PGKGVPYIPGLFAGNPGSTNSTPTGSAAS------SNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKIVSPSTSPPAS 624
|
90 100 110
....*....|....*....|....*....|
gi 1373882542 188 S------TPPSMAPPMGSMPPSMAPPMGSM 211
Cdd:PLN02217 625 HlgspstTPSSPESSIKVASTETASPESSI 654
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
124-282 |
1.29e-03 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 41.17 E-value: 1.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 124 PPSMTPPMGSTPPSIAPPmGSTPPSMAPPTGSTPPSTA----------------------PPMGSTPPSTAPPMGSTPPS 181
Cdd:pfam09770 107 PAARAAQSSAQPPASSLP-QYQYASQQSQQPSKPVRTGyekykepepipdlqvdaslwgvAPKKAAAPAPAPQPAAQPAS 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 182 TAPP---------------MGSTPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPslAPPMGSTPP 246
Cdd:pfam09770 186 LPAPsrkmmsleeveaamrAQAKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQ--QHPGQGHPV 263
|
170 180 190
....*....|....*....|....*....|....*.
gi 1373882542 247 SVAPPMGSTPPSLAPPMGSTPPSMAPSMAPPMGSTP 282
Cdd:pfam09770 264 TILQRPQSPQPDPAQPSIQPQAQQFHQQPPPVPVQP 299
|
|
| SOBP |
pfam15279 |
Sine oculis-binding protein; SOBP is associated with syndromic and nonsyndromic intellectual ... |
102-291 |
1.66e-03 |
|
Sine oculis-binding protein; SOBP is associated with syndromic and nonsyndromic intellectual disability. It carries a zinc-finger of the zf-C2H2 type at the N-terminus, and a highly characteriztic C-terminal PhPhPhPhPhPh motif. The deduced 873-amino acid protein contains an N-terminal nuclear localization signal (NLS), followed by 2 FCS-type zinc finger motifs, a proline-rich region (PR1), a putative RNA-binding motif region, and a C-terminal NLS embedded in a second proline-rich motif. SOBP is expressed in various human tissues, including developing mouse brain at embryonic day 14. In postnatal and adult mouse brain SOBP is expressed in all neurons, with intense staining in the limbic system. Highest expression is in layer V cortical neurons, hippocampus, pyriform cortex, dorsomedial nucleus of thalamus, amygdala, and hypothalamus. Postnatal expression of SOBP in the limbic system corresponds to a time of active synaptogenesis. the family is also referred to as Jackson circler, JXC1. In seven affected siblings from a consanguineous Israeli Arab family with mental retardation, anterior maxillary protrusion, and strabismus mutations were found in this protein.
Pssm-ID: 464609 [Multi-domain] Cd Length: 325 Bit Score: 40.18 E-value: 1.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 102 GSATPPPSAGTPPMTSPpmgSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPPS 181
Cdd:pfam15279 91 ESVSPGPSSSASPSSSP---TSSNSSKPLISVASSSKLLAPKPHEPPSLPPPPLPPKKGRRHRPGLHPPLGRPPGSPPMS 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 182 TAPPMGSTPPSMAPPMGSMPPSMAPPMgsMPPSMAPPMGSMPPSMAPPMGSMPPSLAPPMGSTPPSVAPPMGSTPPSLAP 261
Cdd:pfam15279 168 MTPRGLLGKPQQHPPPSPLPAFMEPSS--MPPPFLRPPPSIPQPNSPLSNPMLPGIGPPPKPPRNLGPPSNPMHRPPFSP 245
|
170 180 190
....*....|....*....|....*....|
gi 1373882542 262 PMGSTPPSMAPSMAPPMGSTPPAMAPSSGE 291
Cdd:pfam15279 246 HHPPPPPTPPGPPPGLPPPPPRGFTPPFGP 275
|
|
| PLN02217 |
PLN02217 |
probable pectinesterase/pectinesterase inhibitor |
166-260 |
1.67e-03 |
|
probable pectinesterase/pectinesterase inhibitor
Pssm-ID: 215130 [Multi-domain] Cd Length: 670 Bit Score: 40.84 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 166 STPPSTAPPMGSTPPSTAPPMgSTPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSLAPPMGSTP 245
Cdd:PLN02217 571 STPTGSAASSNTTFSSDSPST-VVAPSTSPPAGHLGSPPATPSKIVSPSTSPPASHLGSPSTTPSSPESSIKVASTETAS 649
|
90
....*....|....*
gi 1373882542 246 PSVAPPMGSTPPSLA 260
Cdd:PLN02217 650 PESSIKVASTESSVS 664
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
115-196 |
1.76e-03 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 40.64 E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 115 MTSPPMGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPmgstPPSTAPPMGSTPPSTAPPMGSTPPSMA 194
Cdd:PRK12270 36 YGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPP----KPAAAAAAAAAPAAPPAAAAAAAPAAA 111
|
..
gi 1373882542 195 PP 196
Cdd:PRK12270 112 AV 113
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
126-217 |
1.76e-03 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 40.64 E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 126 SMTPPMGSTPPSiappmGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPPSTAPPMGSTPPSMAPPmgSMPPSMA 205
Cdd:PRK12270 35 DYGPGSTAAPTA-----AAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPP--AAAAAAA 107
|
90
....*....|..
gi 1373882542 206 PPMGSMPPSMAP 217
Cdd:PRK12270 108 PAAAAVEDEVTP 119
|
|
| PRK10856 |
PRK10856 |
cytoskeleton protein RodZ; |
76-183 |
1.83e-03 |
|
cytoskeleton protein RodZ;
Pssm-ID: 236776 [Multi-domain] Cd Length: 331 Bit Score: 40.01 E-value: 1.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 76 STAVNATKVRALPSDCGITVDYARCPGSATPPPSAGTPpmtsppmGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGS 155
Cdd:PRK10856 151 SAELSQNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTN-------SQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATP 223
|
90 100
....*....|....*....|....*...
gi 1373882542 156 TPPSTAPPMGSTPPSTAPPMGSTPPSTA 183
Cdd:PRK10856 224 APAAPATPDGAAPLPTDQAGVSTPAADP 251
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
101-245 |
1.89e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 40.74 E-value: 1.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 101 PGSATPPPSAGTPPMTSPPMGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPP 180
Cdd:PRK07764 648 AAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQG 727
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 181 STAPPMGSTPPSMAPPMGSMPPSMAPPMGSMPPSMAP-----PMGSMPPSMAPPMGSMPPSLAPPMGSTP 245
Cdd:PRK07764 728 ASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPapaaaPAAAPPPSPPSEEEEMAEDDAPSMDDED 797
|
|
| PABP-1234 |
TIGR01628 |
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
157-278 |
2.15e-03 |
|
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.
Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 40.18 E-value: 2.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 157 PPSTAPPMGSTPPST--APPMGSTPPstAPPMGSTP---PSMAPPMGSM-PPSMAPPMGSMPPSMAPPMGSMPPSMAPPM 230
Cdd:TIGR01628 380 PRMRQLPMGSPMGGAmgQPPYYGQGP--QQQFNGQPlgwPRMSMMPTPMgPGGPLRPNGLAPMNAVRAPSRNAQNAAQKP 457
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1373882542 231 GSMPPSLAPPMGSTPPSVAPPMGSTPPSLAPPMGSTPPSMApSMAPPM 278
Cdd:TIGR01628 458 PMQPVMYPPNYQSLPLSQDLPQPQSTASQGGQNKKLAQVLA-SATPQM 504
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
157-262 |
2.57e-03 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 40.26 E-value: 2.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 157 PPSTAPPMGSTPPSTAPPMGSTPPSTAPPmgSTPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPS 236
Cdd:PRK12270 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKA--PAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVED 115
|
90 100
....*....|....*....|....*.
gi 1373882542 237 LAPPMGSTPPSVAPPMGStppSLAPP 262
Cdd:PRK12270 116 EVTPLRGAAAAVAKNMDA---SLEVP 138
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
150-290 |
2.58e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 40.35 E-value: 2.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 150 APPTGSTPPSTAPPmgstppstAPPMGSTPPSTAPPMGSTPPSMAPPmgsmPPSMAPPMGSMPPSMAPPMGSMPPSMAPP 229
Cdd:PRK07764 385 LGVAGGAGAPAAAA--------PSAAAAAPAAAPAPAAAAPAAAAAP----APAAAPQPAPAPAPAPAPPSPAGNAPAGG 452
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1373882542 230 MGSMPPSLAPPMGSTPPSVAPpmgstPPSLAPPMGSTPPSMAPSMAPPMGSTPPAMAPSSG 290
Cdd:PRK07764 453 APSPPPAAAPSAQPAPAPAAA-----PEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADD 508
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
127-327 |
2.60e-03 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 40.05 E-value: 2.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 127 MTPPMGSTPPSIAPPMGSTP-PSMAPPTGSTPPSTAPPMGSTPPSTAPPMgSTPPSTAPPMGSTPPSMAPPMGSMP--PS 203
Cdd:PHA03378 577 LTSPTTSQLASSAPSYAQTPwPVPHPSQTPEPPTTQSHIPETSAPRQWPM-PLRPIPMRPLRMQPITFNVLVFPTPhqPP 655
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 204 MAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSLAPPMGSTPPSVAPPMgstPPSLAPPMGSTPPSMAPSMAPPMGSTPP 283
Cdd:PHA03378 656 QVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPM---RPPAAPPGRAQRPAAATGRARPPAAAPG 732
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1373882542 284 AMAPSSGetppAMSPPSPPSG------AVSPAPIMTPPSGGTPPAPTVAP 327
Cdd:PHA03378 733 RARPPAA----APGRARPPAAapgrarPPAAAPGRARPPAAAPGAPTPQP 778
|
|
| PABP-1234 |
TIGR01628 |
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
113-236 |
2.84e-03 |
|
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.
Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 39.79 E-value: 2.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 113 PPMTSPPMGSTppsMTPPMGstppsiAPPMGST-PPSMAP------PTGSTPPSTAPPMGSTPPSTAPPMGS--TPPSTA 183
Cdd:TIGR01628 380 PRMRQLPMGSP---MGGAMG------QPPYYGQgPQQQFNgqplgwPRMSMMPTPMGPGGPLRPNGLAPMNAvrAPSRNA 450
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1373882542 184 PPMGSTPPSMapPMGSMPPSM---APPMGSMPPSMAPPMGSMPPSmAPPMGSMPPS 236
Cdd:TIGR01628 451 QNAAQKPPMQ--PVMYPPNYQslpLSQDLPQPQSTASQGGQNKKL-AQVLASATPQ 503
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
101-186 |
3.24e-03 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 39.87 E-value: 3.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 101 PGSATPPPSAGTPPMTSPPMGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPP 180
Cdd:PRK12270 46 AAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPLRGAAA 125
|
....*.
gi 1373882542 181 STAPPM 186
Cdd:PRK12270 126 AVAKNM 131
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
114-185 |
3.74e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 39.54 E-value: 3.74e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1373882542 114 PMTSPPMGSTPPSMTPPmgsTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPPSTAPP 185
Cdd:PRK14954 384 PAGSPDVKKKAPEPDLP---QPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAPLPPSPQASAPR 452
|
|
| PLN03209 |
PLN03209 |
translocon at the inner envelope of chloroplast subunit 62; Provisional |
98-287 |
3.86e-03 |
|
translocon at the inner envelope of chloroplast subunit 62; Provisional
Pssm-ID: 178748 [Multi-domain] Cd Length: 576 Bit Score: 39.52 E-value: 3.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 98 ARCPGSATPP--PSAGTPPMTSPPMGSTPPSMTPPMGSTPPSiAPPMGSTPPS-------MAPPTGSTP--PSTAPPMGS 166
Cdd:PLN03209 321 AKIPSQRVPPkeSDAADGPKPVPTKPVTPEAPSPPIEEEPPQ-PKAVVPRPLSpytayedLKPPTSPIPtpPSSSPASSK 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 167 TPPSTAPPMGSTPPSTAPPMGSTPPSMAPPMGSMPPSMAPPMGSMP-------PSMAPPMGSMPPSMAPPMGSMPPSLAP 239
Cdd:PLN03209 400 SVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYEdlkpptsPSPTAPTGVSPSVSSTSSVPAVPDTAP 479
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1373882542 240 PMGSTPPSVAPPMGSTPPSLAPPMGSTPPSMAPSMAPPMGSTPPAMAP 287
Cdd:PLN03209 480 ATAATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTN 527
|
|
| Chi1 |
COG3469 |
Chitinase [Carbohydrate transport and metabolism]; |
14-203 |
3.93e-03 |
|
Chitinase [Carbohydrate transport and metabolism];
Pssm-ID: 442692 [Multi-domain] Cd Length: 534 Bit Score: 39.35 E-value: 3.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 14 CFSGVSAQFTPDCQAAAISLASCYSYASGPATTPPSDCCAPLRQVNANNPDCVCQALANVGTSTAVNATKVRALPSDCGI 93
Cdd:COG3469 27 ATAASVTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAATSSTTSTTATATAAAAAATSTSATLVATSTASGAN 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 94 TVDYARCPGSATPP-PSAGTPPMTSPPMGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPmgsTPPSTA 172
Cdd:COG3469 107 TGTSTVTTTSTGAGsVTSTTSSTAGSTTTSGASATSSAGSTTTTTTVSGTETATGGTTTTSTTTTTTSAST---TPSATT 183
|
170 180 190
....*....|....*....|....*....|.
gi 1373882542 173 PPMGSTPPSTAPPMGSTPPSMAPPMGSMPPS 203
Cdd:COG3469 184 TATATTASGATTPSATTTATTTGPPTPGLPK 214
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
201-283 |
4.13e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 39.41 E-value: 4.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 201 PPSMAPPMGSMPPSMAP-PMGSMPPSMAPPMgSMPPSLAPPMGSTPPSVAPPMGSTPPSLAPPMGS-TPPSMAPSMAPPM 278
Cdd:PRK14950 365 APQPAKPTAAAPSPVRPtPAPSTRPKAAAAA-NIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPkLTRAAIPVDEKPK 443
|
....*
gi 1373882542 279 GSTPP 283
Cdd:PRK14950 444 YTPPA 448
|
|
| GET2 |
pfam08690 |
GET complex subunit GET2; This family corresponds to the GET complex subunit GET2. The GET ... |
93-223 |
4.42e-03 |
|
GET complex subunit GET2; This family corresponds to the GET complex subunit GET2. The GET complex is involved in the retrieval of ER resident proteins from the Golgi. It forms a complex with GET1 and constitutes the ER membrane receptor for GET3. It facilitates the release of tail- anchored (TA) proteins from GET3 and mediates the subsequent entry into the ER membrane.
Pssm-ID: 400847 Cd Length: 308 Bit Score: 38.92 E-value: 4.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 93 ITVDYARCPGSATPPPSAGTPPmtsppmGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTA 172
Cdd:pfam08690 29 ITGQGSSVKLSTTSVLDEPAAP------STTPASTTASSSPSADEHDDPEIVDISEIASQPKKTASVPKKPPSSEESDPE 102
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1373882542 173 PP-------------MGSTPPSTAPPMGSTPPSMAPPMGsmppSMAPPMGSMPPSMAPPMGSMP 223
Cdd:pfam08690 103 NPqldqmfkqllgqqQQGGGENGQPAGSSTPDLFSQMMK----MMMQGGGGGPDGAPGTSSNPA 162
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
173-318 |
5.07e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 39.31 E-value: 5.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 173 PPMGSTPPSTAPPMGSTPPSMAPPMGSMPPSMAPPMGSMPPsmappmgsmPPSMAPPMGSMPPSLAPPMGSTPPSVAPPm 252
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA---------PAAAASAPAAPPAAAPPAPVAAPAAAAPA- 435
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1373882542 253 gstPPSLAPPMGSTPPSMAPSMAPPMGSTPPAMApssgETPPAMSPPSPPSGAVSPAPIMTPPSGG 318
Cdd:PRK14951 436 ---AAPAAAPAAVALAPAPPAQAAPETVAIPVRV----APEPAVASAAPAPAAAPAAARLTPTEEG 494
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
148-250 |
5.40e-03 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 38.79 E-value: 5.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 148 SMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPPSTAPPMGSTPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSMA 227
Cdd:PRK06995 50 ALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAERAAAENAA 129
|
90 100
....*....|....*....|...
gi 1373882542 228 PPMGSMPPSLAPPMGSTPPSVAP 250
Cdd:PRK06995 130 RRLARAAAAAPRPRVPADAAAAV 152
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
66-163 |
5.46e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 39.02 E-value: 5.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 66 VCQALANVGTSTAVNATKVrALPSDCGITVDYARCPGSATPPPSAGTPPMTSPPmgsTPPSMTPPMGSTPPSIAPPMGST 145
Cdd:PRK14950 355 VIEALLVPVPAPQPAKPTA-AAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETA---TPPPVPPRPVAPPVPHTPESAPK 430
|
90
....*....|....*...
gi 1373882542 146 PPSMAPPTGSTPPSTAPP 163
Cdd:PRK14950 431 LTRAAIPVDEKPKYTPPA 448
|
|
| PLN02217 |
PLN02217 |
probable pectinesterase/pectinesterase inhibitor |
144-238 |
5.50e-03 |
|
probable pectinesterase/pectinesterase inhibitor
Pssm-ID: 215130 [Multi-domain] Cd Length: 670 Bit Score: 38.92 E-value: 5.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 144 STPPSMAPPTGSTPPSTAPPMgSTPPSTAPPMGSTPPSTAPPMGSTPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMP 223
Cdd:PLN02217 571 STPTGSAASSNTTFSSDSPST-VVAPSTSPPAGHLGSPPATPSKIVSPSTSPPASHLGSPSTTPSSPESSIKVASTETAS 649
|
90
....*....|....*
gi 1373882542 224 PSMAPPMGSMPPSLA 238
Cdd:PLN02217 650 PESSIKVASTESSVS 664
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
116-243 |
5.72e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 39.20 E-value: 5.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 116 TSPPMGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTgstPPSTAPPMGSTPPSTAPPMGSTPPSTAPPMGSTPPSMAP 195
Cdd:PRK07764 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPA---PAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPS 463
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1373882542 196 PMGSMPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSLAPPMGS 243
Cdd:PRK07764 464 AQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAAT 511
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
141-422 |
6.21e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 39.15 E-value: 6.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 141 PMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPPST---APPMGSTPPSM------------------APPMGS 199
Cdd:PHA03247 2478 PVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAIlpdEPVGEPVHPRMltwirgleelasddagdpPPPLPP 2557
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 200 MPPSMAPPMGSMPPSMAP-PMG----------SMPPSMAPPMGSMPPSlAPPMGSTPPSVAPPMGSTPPslaPPMGSTPP 268
Cdd:PHA03247 2558 AAPPAAPDRSVPPPRPAPrPSEpavtsrarrpDAPPQSARPRAPVDDR-GDPRGPAPPSPLPPDTHAPD---PPPPSPSP 2633
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 269 SMAPSMAPPMGSTPPAMAPSSGETPPAMSPPSPPSGAVSPAPIMTPPSGGTPPA--PTVAPSSGEMPPTPSGSMPSPPPE 346
Cdd:PHA03247 2634 AANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAarPTVGSLTSLADPPPPPPTPEPAPH 2713
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1373882542 347 SSPMAPSSGATPPGSSPTSPSEAPGSVNPSPANSPI--GATNPPVTSPEAPGPVAPSNNAASMGASWTVGVAAAVALL 422
Cdd:PHA03247 2714 ALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPAtpGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASL 2791
|
|
| PRK12438 |
PRK12438 |
hypothetical protein; Provisional |
137-194 |
6.23e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 171499 [Multi-domain] Cd Length: 991 Bit Score: 39.07 E-value: 6.23e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 1373882542 137 SIAPPMGSTPPSmAPPTGSTPPstappmgsTPPSTAPPMGSTPPSTAPPMGSTPPSMA 194
Cdd:PRK12438 901 RVATAPGGDAAS-APPPGAGPP--------APPQAVPPPRTTQPPAAPPRGPDVPPAA 949
|
|
| PLN02217 |
PLN02217 |
probable pectinesterase/pectinesterase inhibitor |
177-271 |
6.37e-03 |
|
probable pectinesterase/pectinesterase inhibitor
Pssm-ID: 215130 [Multi-domain] Cd Length: 670 Bit Score: 38.92 E-value: 6.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 177 STPPSTAPPMGSTPPSMAPPMgSMPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSLAPPMGSTPPSVAPPMGSTP 256
Cdd:PLN02217 571 STPTGSAASSNTTFSSDSPST-VVAPSTSPPAGHLGSPPATPSKIVSPSTSPPASHLGSPSTTPSSPESSIKVASTETAS 649
|
90
....*....|....*
gi 1373882542 257 PSLAPPMGSTPPSMA 271
Cdd:PLN02217 650 PESSIKVASTESSVS 664
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
149-275 |
6.40e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 38.81 E-value: 6.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 149 MAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPPSTAPPmgstPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSMAP 228
Cdd:PRK07764 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAP----APAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAP 462
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1373882542 229 PMGSMPPSLAPPMGSTPPSVAPPMGSTPP-SLAPPMGSTPPSMAPSMA 275
Cdd:PRK07764 463 SAQPAPAPAAAPEPTAAPAPAPPAAPAPAaAPAAPAAPAAPAGADDAA 510
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
113-410 |
6.55e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 39.00 E-value: 6.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 113 PPMTSPPMGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPPSTAPPMGSTPPS 192
Cdd:PHA03307 24 PPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPARE 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 193 MAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPslaPPMGSTPPSVAPPMGSTPPSLAPPMGSTPPSMAP 272
Cdd:PHA03307 104 GSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGP---PPAASPPAAGASPAAVASDAASSRQAALPLSSPE 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 273 SMAPPMGSTPPAMAPSSGETPPAMSPPSPPSGAVSPAPIMTPPSGGTPPAPTVAPSSGEMPPTPSGSMPSPPPESSPMAP 352
Cdd:PHA03307 181 ETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRP 260
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1373882542 353 SSGATPPGSSPTSPSEAPGSVNPSPANSPIGATNPPVTSPEAPGPVAPSNNAASMGAS 410
Cdd:PHA03307 261 APITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSS 318
|
|
| SOBP |
pfam15279 |
Sine oculis-binding protein; SOBP is associated with syndromic and nonsyndromic intellectual ... |
114-251 |
7.01e-03 |
|
Sine oculis-binding protein; SOBP is associated with syndromic and nonsyndromic intellectual disability. It carries a zinc-finger of the zf-C2H2 type at the N-terminus, and a highly characteriztic C-terminal PhPhPhPhPhPh motif. The deduced 873-amino acid protein contains an N-terminal nuclear localization signal (NLS), followed by 2 FCS-type zinc finger motifs, a proline-rich region (PR1), a putative RNA-binding motif region, and a C-terminal NLS embedded in a second proline-rich motif. SOBP is expressed in various human tissues, including developing mouse brain at embryonic day 14. In postnatal and adult mouse brain SOBP is expressed in all neurons, with intense staining in the limbic system. Highest expression is in layer V cortical neurons, hippocampus, pyriform cortex, dorsomedial nucleus of thalamus, amygdala, and hypothalamus. Postnatal expression of SOBP in the limbic system corresponds to a time of active synaptogenesis. the family is also referred to as Jackson circler, JXC1. In seven affected siblings from a consanguineous Israeli Arab family with mental retardation, anterior maxillary protrusion, and strabismus mutations were found in this protein.
Pssm-ID: 464609 [Multi-domain] Cd Length: 325 Bit Score: 38.26 E-value: 7.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 114 PMTSPPMGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPPSTAPPMGSTPPSM 193
Cdd:pfam15279 160 PPGSPPMSMTPRGLLGKPQQHPPPSPLPAFMEPSSMPPPFLRPPPSIPQPNSPLSNPMLPGIGPPPKPPRNLGPPSNPMH 239
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1373882542 194 APPMG-SMPPSMAPPMGSMPPSMAPPMGSMPPSMAPP-----MGSMPPSLAPPMGSTPPSVAPP 251
Cdd:pfam15279 240 RPPFSpHHPPPPPTPPGPPPGLPPPPPRGFTPPFGPPfppvnMMPNPPEMNFGLPSLAPLVPPV 303
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
132-330 |
7.42e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 38.68 E-value: 7.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 132 GSTPPSIAPPM--GSTPPSMAPPTGSTPPSTAPPMGstpPSTAPPMGSTPPSTAPPMGSTPPSmAPPMGSMPPSMAPPMG 209
Cdd:PRK07003 365 GGAPGGGVPARvaGAVPAPGARAAAAVGASAVPAVT---AVTGAAGAALAPKAAAAAAATRAE-APPAAPAPPATADRGD 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 210 SMPPSMAPPMGSMPPSMAPPMGSMPPSLAPPMGSTPpSVAPPMGSTPPSLAPPMGSTPPSMAPSMAPPMGSTPPAMAPSS 289
Cdd:PRK07003 441 DAADGDAPVPAKANARASADSRCDERDAQPPADSGS-ASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASRE 519
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1373882542 290 GETPPAMSPPSPPSGAVSPAPIMTPPSGGTPPAPTVAPSSG 330
Cdd:PRK07003 520 DAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAG 560
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
132-254 |
7.54e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 38.81 E-value: 7.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 132 GSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPmgSTPPSTAPPMGSTPPSTAPPMGSTPPSMAPPMGSMPPSMAPPMGSM 211
Cdd:PRK07764 391 AGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAA--PAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAP 468
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1373882542 212 PPSMAPPMGSMPPSMAPPMGSMPPSLAPPMGSTPPSVAPPMGS 254
Cdd:PRK07764 469 APAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAAT 511
|
|
| half-pint |
TIGR01645 |
poly-U binding splicing factor, half-pint family; The proteins represented by this model ... |
97-286 |
7.63e-03 |
|
poly-U binding splicing factor, half-pint family; The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Pssm-ID: 130706 [Multi-domain] Cd Length: 612 Bit Score: 38.51 E-value: 7.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 97 YARCPGSATPPPSAGTP--PMTSPPMGSTPPS--------MTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMgs 166
Cdd:TIGR01645 275 YLRVGKCVTPPDALLQPatVSAIPAAAAVAAAaatakimaAEAVAGAAVLGPRAQSPATPSSSLPTDIGNKAVVSSAK-- 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 167 TPPSTAPPMGSTPPSTAPPMGSTPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSLAPpmgsTPP 246
Cdd:TIGR01645 353 KEAEEVPPLPQAAPAVVKPGPMEIPTPVPPPGLAIPSLVAPPGLVAPTEINPSFLASPRKKMKREKLPVTFGA----LDD 428
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1373882542 247 SVAppmgstppsLAPPMGSTPPSMAPSMAPPMGSTPPAMA 286
Cdd:TIGR01645 429 TLA---------WKEPSKEDQTSEDGKMLAIMGEAAAALA 459
|
|
| motB |
PRK12799 |
flagellar motor protein MotB; Reviewed |
143-262 |
7.92e-03 |
|
flagellar motor protein MotB; Reviewed
Pssm-ID: 183756 [Multi-domain] Cd Length: 421 Bit Score: 38.16 E-value: 7.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 143 GSTPPSMAPPTGSTPPSTAPPMgSTPPSTAPPMGSTPPSTAPPMGSTPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSM 222
Cdd:PRK12799 297 GTVPVAAVTPSSAVTQSSAITP-SSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSDVTLPGTVALPAAEPVNMQ 375
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1373882542 223 PPSMAPPMGSMPPSLAPPMGSTPPSVAPPmgSTPPSLAPP 262
Cdd:PRK12799 376 PQPMSTTETQQSSTGNITSTANGPTTSLP--AAPASNIPV 413
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
194-384 |
8.60e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 38.68 E-value: 8.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 194 APPMGSMPPSMAPPM--GSMPPSMAPPMGSMPPSMAPPMGsmPPSLAPPMGSTPPSVAPPMGSTPPslAPPMGSTPPSMA 271
Cdd:PRK07003 361 AVTGGGAPGGGVPARvaGAVPAPGARAAAAVGASAVPAVT--AVTGAAGAALAPKAAAAAAATRAE--APPAAPAPPATA 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 272 PSMAPPMGSTPPAMAPSSGETPPAMSPPSPPSGAVSPAPIMTPPSGGTPPAPTVAPSSGEMPPTPSGSMPSPPPESSPMA 351
Cdd:PRK07003 437 DRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAA 516
|
170 180 190
....*....|....*....|....*....|...
gi 1373882542 352 PSSGATPPGSSPTSPSEAPGSVNPSPANSPIGA 384
Cdd:PRK07003 517 SREDAPAAAAPPAPEARPPTPAAAAPAARAGGA 549
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
95-174 |
8.73e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 38.39 E-value: 8.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 95 VDYARCPGSATPPPSAGTP--PMTSPPMGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTA 172
Cdd:PRK14954 371 IELVRNDGGVAPSPAGSPDvkKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAPLPPSPQASA 450
|
..
gi 1373882542 173 PP 174
Cdd:PRK14954 451 PR 452
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
102-292 |
8.83e-03 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 38.36 E-value: 8.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 102 GSATPPPSAGTPPMTSPPMGSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPPS 181
Cdd:pfam05109 438 GFAAPNTTTGLPSSTHVPTNLTAPASTGPTVSTADVTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPT 517
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 182 taPPMGSTPPSMAPPmgsMPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSLA--PPMGSTPPSVAPPMgSTPPSL 259
Cdd:pfam05109 518 --PNATSPTPAVTTP---TPNATSPTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNAtiPTLGKTSPTSAVTT-PTPNAT 591
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1373882542 260 APPMGSTPP-------SMAPSMAPPMGSTPPAMAPSSGET 292
Cdd:pfam05109 592 SPTVGETSPqanttnhTLGGTSSTPVVTSPPKNATSAVTT 631
|
|
| PRK12438 |
PRK12438 |
hypothetical protein; Provisional |
101-161 |
9.02e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 171499 [Multi-domain] Cd Length: 991 Bit Score: 38.30 E-value: 9.02e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1373882542 101 PGSATPPPSAGTPPMTSPPMGSTPPsmtppmgsTPPSIAPPMGSTPPSMAPPTGSTPPSTA 161
Cdd:PRK12438 897 PGTGRVATAPGGDAASAPPPGAGPP--------APPQAVPPPRTTQPPAAPPRGPDVPPAA 949
|
|
| rad23 |
TIGR00601 |
UV excision repair protein Rad23; All proteins in this family for which functions are known ... |
143-203 |
9.29e-03 |
|
UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273167 [Multi-domain] Cd Length: 378 Bit Score: 37.95 E-value: 9.29e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1373882542 143 GSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPPSTAPPMGSTPPSMAPPMGSMPPS 203
Cdd:TIGR00601 82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
|
|
| rad23 |
TIGR00601 |
UV excision repair protein Rad23; All proteins in this family for which functions are known ... |
108-182 |
9.46e-03 |
|
UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273167 [Multi-domain] Cd Length: 378 Bit Score: 37.95 E-value: 9.46e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1373882542 108 PSAGTPPMTSPPmgSTPPSMTPPMGSTPPSIAPPMGSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPPST 182
Cdd:TIGR00601 77 PKTGTGKVAPPA--ATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSSGSDAAST 149
|
|
| rad23 |
TIGR00601 |
UV excision repair protein Rad23; All proteins in this family for which functions are known ... |
127-203 |
9.54e-03 |
|
UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273167 [Multi-domain] Cd Length: 378 Bit Score: 37.95 E-value: 9.54e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1373882542 127 MTPPMGSTPPSIAPPmgSTPPSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTPPSTAPPMGSTPPSMAPPMGSMPPS 203
Cdd:TIGR00601 74 VSKPKTGTGKVAPPA--ATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSSGSDAAS 148
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
101-282 |
9.88e-03 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 38.21 E-value: 9.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 101 PGSATPPPSAGTPPMTSPPMGSTPPSMTPPMGSTPPSIAPPMGSTP-PSMAPPTGSTPPSTAPPMGSTPPSTAPPMGSTP 179
Cdd:pfam03154 200 TPSAPSVPPQGSPATSQPPNQTQSTAAPHTLIQQTPTLHPQRLPSPhPPLQPMTQPPPPSQVSPQPLPQPSLHGQMPPMP 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373882542 180 PSTAPPMGSTPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSMAPPMGSMPPSLAPPMGSTPPSVAPPMGSTPPSL 259
Cdd:pfam03154 280 HSLQTGPSHMQHPVPPQPFPLTPQSSQSQVPPGPSPAAPGQSQQRIHTPPSQSQLQSQQPPREQPLPPAPLSMPHIKPPP 359
|
170 180
....*....|....*....|...
gi 1373882542 260 APPMGSTPPSMAPSMaPPMGSTP 282
Cdd:pfam03154 360 TTPIPQLPNPQSHKH-PPHLSGP 381
|
|
| |
