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Conserved domains on  [gi|1204879960|ref|XP_021285080|]
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protein transport protein SEC31 [Herrania umbratica]

Protein Classification

UBA-like domain-containing protein( domain architecture ID 12073806)

UBA-like domain-containing protein, formerly called DUF1421 domain-containing protein

PubMed:  26228684

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1421 pfam07223
UBA-like domain (DUF1421); This domain represents a conserved region that has a UBA like fold. ...
 499-543 9.86e-22

UBA-like domain (DUF1421); This domain represents a conserved region that has a UBA like fold. It is found in a number of plant proteins of unknown function.


:

Pssm-ID: 399892  Cd Length: 45  Bit Score: 88.23  E-value: 9.86e-22
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1204879960 499 YGDLIEKLVSMGFRGDHVASVIQRMEESGQPVDFNAVLDRLNVHS 543
Cdd:pfam07223   1 YGDMIDKVVSMGFPGDHVRSMILRMVEAGQPVDFNVVLDRLSSGS 45
PAT1 super family cl37801
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 208-320 5.87e-03

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


The actual alignment was detected with superfamily member pfam09770:

Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 39.63  E-value: 5.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1204879960 208 MQSQQLALALPHQVAPPQQPVVPHSQAPPQnLTQQSYYIPPNQlsnpqaQAQVPAPAPVPAPAPTPAPAPSQHPQSQYL- 286
Cdd:pfam09770 203 MRAQAKKPAQQPAPAPAQPPAAPPAQQAQQ-QQQFPPQIQQQQ------QPQQQPQQPQQHPGQGHPVTILQRPQSPQPd 275

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1204879960 287 PSDPQYRTPQIPDISRMPPQPTQ-SQVNQVPPVQS 320
Cdd:pfam09770 276 PAQPSIQPQAQQFHQQPPPVPVQpTQILQNPNRLS 310
 
Name Accession Description Interval E-value
DUF1421 pfam07223
UBA-like domain (DUF1421); This domain represents a conserved region that has a UBA like fold. ...
 499-543 9.86e-22

UBA-like domain (DUF1421); This domain represents a conserved region that has a UBA like fold. It is found in a number of plant proteins of unknown function.


Pssm-ID: 399892  Cd Length: 45  Bit Score: 88.23  E-value: 9.86e-22
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1204879960 499 YGDLIEKLVSMGFRGDHVASVIQRMEESGQPVDFNAVLDRLNVHS 543
Cdd:pfam07223   1 YGDMIDKVVSMGFPGDHVRSMILRMVEAGQPVDFNVVLDRLSSGS 45
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 208-320 5.87e-03

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 39.63  E-value: 5.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1204879960 208 MQSQQLALALPHQVAPPQQPVVPHSQAPPQnLTQQSYYIPPNQlsnpqaQAQVPAPAPVPAPAPTPAPAPSQHPQSQYL- 286
Cdd:pfam09770 203 MRAQAKKPAQQPAPAPAQPPAAPPAQQAQQ-QQQFPPQIQQQQ------QPQQQPQQPQQHPGQGHPVTILQRPQSPQPd 275

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1204879960 287 PSDPQYRTPQIPDISRMPPQPTQ-SQVNQVPPVQS 320
Cdd:pfam09770 276 PAQPSIQPQAQQFHQQPPPVPVQpTQILQNPNRLS 310
 
Name Accession Description Interval E-value
DUF1421 pfam07223
UBA-like domain (DUF1421); This domain represents a conserved region that has a UBA like fold. ...
 499-543 9.86e-22

UBA-like domain (DUF1421); This domain represents a conserved region that has a UBA like fold. It is found in a number of plant proteins of unknown function.


Pssm-ID: 399892  Cd Length: 45  Bit Score: 88.23  E-value: 9.86e-22
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1204879960 499 YGDLIEKLVSMGFRGDHVASVIQRMEESGQPVDFNAVLDRLNVHS 543
Cdd:pfam07223   1 YGDMIDKVVSMGFPGDHVRSMILRMVEAGQPVDFNVVLDRLSSGS 45
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 208-320 5.87e-03

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 39.63  E-value: 5.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1204879960 208 MQSQQLALALPHQVAPPQQPVVPHSQAPPQnLTQQSYYIPPNQlsnpqaQAQVPAPAPVPAPAPTPAPAPSQHPQSQYL- 286
Cdd:pfam09770 203 MRAQAKKPAQQPAPAPAQPPAAPPAQQAQQ-QQQFPPQIQQQQ------QPQQQPQQPQQHPGQGHPVTILQRPQSPQPd 275

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1204879960 287 PSDPQYRTPQIPDISRMPPQPTQ-SQVNQVPPVQS 320
Cdd:pfam09770 276 PAQPSIQPQAQQFHQQPPPVPVQpTQILQNPNRLS 310
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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