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Conserved domains on  [gi|1191008940|ref|XP_020881048|]
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disease resistance protein RPS6 isoform X1 [Arabidopsis lyrata subsp. lyrata]

Protein Classification

disease resistance family protein; NB-LRR family disease resistance protein( domain architecture ID 11477574)

disease resistance family protein similar to Nicotiana glutinosa TMV resistance protein N; resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein| NB-LRR (nucleotide-binding-leucine rich repeat) family disease resistance protein guards the plant against pathogens via an indirect interaction with an avirulence protein contained in the plant, triggering a defense response that restricts the pathogen growth

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PLN03210 PLN03210
Resistant to P. syringae 6; Provisional
 10-1107 0e+00

Resistant to P. syringae 6; Provisional


:

Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 2107.61  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940   10 RNWSYDVFPSFSGEDVRNTFLSHFLKELDSKLIISFKDNEIERSQSLDPELKHGIRNSRIAVVVFSKNYASSSWCLNELL 89
Cdd:PLN03210     9 RNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELL 88

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940   90 EIVKCKKEFGQLVIPIFYHLDPSHVRKQTGDFGKIFEKTCRNKTVDEKIRWKEALTDVANILGYHIVTWDNEASMIKEIA 169
Cdd:PLN03210    89 EIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIA 168

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  170 NDILGKINLSPSNDFEDLVGIEDHITRMSSLLHLESEEVRMVGIWGPSGIGKTTIARALFSQLSCQFQSSVFIDRVFISK 249
Cdd:PLN03210   169 NDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  250 SMEVYSGANLVDYNMKLHLQRAFLAEFFDKKDIKIDHIGAMENMVKHRKALIVIDDLDDQDVLDALAGRTQWFGSGSRII 329
Cdd:PLN03210   249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRII 328

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  330 VVTRNKHFLRANGIDHIYKVCLPSNALALEMFCRSAFRKSSPPDGFMELSSEVALRAGNLPLGLNVLGSNLRGRDKGYWI 409
Cdd:PLN03210   329 VITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWM 408

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  410 DMLPRLQ-GLDGKIGKTLRVSYDGLNNRKDEAIFRHIACIFNGEKVSDIKLLLANSNLDVNIGLKNLVDRSLICERFNTV 488
Cdd:PLN03210   409 DMLPRLRnGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIV 488

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  489 EMHSLLQEMGKEIVRTQSDEPGEREFLVDLKDICDVLEDNAGTKKVLGITLDIDETDELHIHESSFKGMHNLLFLKIYTK 568
Cdd:PLN03210   489 EMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTK 568

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  569 KLDQKKEVRWHLPERFNYLPSKLRLLRFDRYPLKRLPSNFHPENLVKLQMQQSKLEKLWEGVHSLAGLRNMDLRGSKNLK 648
Cdd:PLN03210   569 KWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK 648

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  649 EIPDLSMATNLETLKLSSCSSLVELPSSIQYLNKLNDLDISYCDHLETIPTGVNLKSLYRLNLSGCSRLKSFLDISTNIS 728
Cdd:PLN03210   649 EIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNIS 728

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  729 WLDIDQTA--EIPSNLRLQNLDELILCE--------RVQLRTPLMTMLSPTLTRLTFSNNQSLVEVPSSIQNLNQLEHLE 798
Cdd:PLN03210   729 WLDLDETAieEFPSNLRLENLDELILCEmkseklweRVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLE 808

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  799 IMNCRNLVTLPTGINLESLIALDLSHCSQLRTFPDISTNISDLKLSYTAIEEVPLWIEKLSLLCNLDMNGCSNLLRVSPN 878
Cdd:PLN03210   809 IENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLN 888

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  879 ISKLKHLEGADFSDCVALTEASWNGSSSEMAK-------FLPpdyfSTVKLNFINCFNLDLKALIQNQTFSMQLILSGEE 951
Cdd:PLN03210   889 ISKLKHLETVDFSDCGALTEASWNGSPSEVAMatdnihsKLP----STVCINFINCFNLDQEALLQQQSIFKQLILSGEE 964

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  952 VPSYFAHRTTGSS---ISLPHISVCQSFFSFRGCTVIDVESFSTISVSFDIEVCCRFIDKLGNHVDSTDFPGYFRTTNLG 1028
Cdd:PLN03210   965 VPSYFTHRTTGASltnIPLLHISPCQPFFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLGNHFDSPYQPHVFSVTKKG 1044

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940 1029 AHLVIFDCCFPLNEDTTTFLDgqFNYDHMDIQFRLTNGNSQLKLKGCGILLSEDVPSL-----------DNQPCSPNILP 1097
Cdd:PLN03210  1045 SHLVIFDCCFPLNEDNAPLAE--LNYDHVDIQFRLTNKNSQLKLKGCGIRLSEDDSSLnntlpnveeadDDNPVNGSEHW 1122

                         1130
                   ....*....|
gi 1191008940 1098 DVCEDSAVER 1107
Cdd:PLN03210  1123 EDCEDSALER 1132
 
Name Accession Description Interval E-value
PLN03210 PLN03210
Resistant to P. syringae 6; Provisional
 10-1107 0e+00

Resistant to P. syringae 6; Provisional


Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 2107.61  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940   10 RNWSYDVFPSFSGEDVRNTFLSHFLKELDSKLIISFKDNEIERSQSLDPELKHGIRNSRIAVVVFSKNYASSSWCLNELL 89
Cdd:PLN03210     9 RNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELL 88

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940   90 EIVKCKKEFGQLVIPIFYHLDPSHVRKQTGDFGKIFEKTCRNKTVDEKIRWKEALTDVANILGYHIVTWDNEASMIKEIA 169
Cdd:PLN03210    89 EIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIA 168

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  170 NDILGKINLSPSNDFEDLVGIEDHITRMSSLLHLESEEVRMVGIWGPSGIGKTTIARALFSQLSCQFQSSVFIDRVFISK 249
Cdd:PLN03210   169 NDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  250 SMEVYSGANLVDYNMKLHLQRAFLAEFFDKKDIKIDHIGAMENMVKHRKALIVIDDLDDQDVLDALAGRTQWFGSGSRII 329
Cdd:PLN03210   249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRII 328

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  330 VVTRNKHFLRANGIDHIYKVCLPSNALALEMFCRSAFRKSSPPDGFMELSSEVALRAGNLPLGLNVLGSNLRGRDKGYWI 409
Cdd:PLN03210   329 VITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWM 408

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  410 DMLPRLQ-GLDGKIGKTLRVSYDGLNNRKDEAIFRHIACIFNGEKVSDIKLLLANSNLDVNIGLKNLVDRSLICERFNTV 488
Cdd:PLN03210   409 DMLPRLRnGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIV 488

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  489 EMHSLLQEMGKEIVRTQSDEPGEREFLVDLKDICDVLEDNAGTKKVLGITLDIDETDELHIHESSFKGMHNLLFLKIYTK 568
Cdd:PLN03210   489 EMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTK 568

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  569 KLDQKKEVRWHLPERFNYLPSKLRLLRFDRYPLKRLPSNFHPENLVKLQMQQSKLEKLWEGVHSLAGLRNMDLRGSKNLK 648
Cdd:PLN03210   569 KWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK 648

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  649 EIPDLSMATNLETLKLSSCSSLVELPSSIQYLNKLNDLDISYCDHLETIPTGVNLKSLYRLNLSGCSRLKSFLDISTNIS 728
Cdd:PLN03210   649 EIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNIS 728

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  729 WLDIDQTA--EIPSNLRLQNLDELILCE--------RVQLRTPLMTMLSPTLTRLTFSNNQSLVEVPSSIQNLNQLEHLE 798
Cdd:PLN03210   729 WLDLDETAieEFPSNLRLENLDELILCEmkseklweRVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLE 808

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  799 IMNCRNLVTLPTGINLESLIALDLSHCSQLRTFPDISTNISDLKLSYTAIEEVPLWIEKLSLLCNLDMNGCSNLLRVSPN 878
Cdd:PLN03210   809 IENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLN 888

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  879 ISKLKHLEGADFSDCVALTEASWNGSSSEMAK-------FLPpdyfSTVKLNFINCFNLDLKALIQNQTFSMQLILSGEE 951
Cdd:PLN03210   889 ISKLKHLETVDFSDCGALTEASWNGSPSEVAMatdnihsKLP----STVCINFINCFNLDQEALLQQQSIFKQLILSGEE 964

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  952 VPSYFAHRTTGSS---ISLPHISVCQSFFSFRGCTVIDVESFSTISVSFDIEVCCRFIDKLGNHVDSTDFPGYFRTTNLG 1028
Cdd:PLN03210   965 VPSYFTHRTTGASltnIPLLHISPCQPFFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLGNHFDSPYQPHVFSVTKKG 1044

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940 1029 AHLVIFDCCFPLNEDTTTFLDgqFNYDHMDIQFRLTNGNSQLKLKGCGILLSEDVPSL-----------DNQPCSPNILP 1097
Cdd:PLN03210  1045 SHLVIFDCCFPLNEDNAPLAE--LNYDHVDIQFRLTNKNSQLKLKGCGIRLSEDDSSLnntlpnveeadDDNPVNGSEHW 1122

                         1130
                   ....*....|
gi 1191008940 1098 DVCEDSAVER 1107
Cdd:PLN03210  1123 EDCEDSALER 1132
TIR pfam01582
TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular ...
 14-179 6.78e-66

TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades.


Pssm-ID: 396246 [Multi-domain]  Cd Length: 165  Bit Score: 219.54  E-value: 6.78e-66
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940   14 YDVFPSFSGEDVRNTFLSHFLKELDSKLIISFKD-NEIERSQSLDPELKHGIRNSRIAVVVFSKNYASSSWCLNELLEIV 92
Cdd:pfam01582    1 YDVFLSFRGSDTREWFVSHLLKELKQKGIKLFIDdRDLEPGEAIAPELLSAIEKSRRSVVVLSPNYASSGWCLDELVKIL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940   93 KCKKEFGQLVIPIFYHLDPSHVRKQTGDFGKIFEKTCRNKTVDEKIRWKEALTDVANIlgYHIVTWDNEASMIKEIANDI 172
Cdd:pfam01582   81 ECALDLGQKVIPIFYEVDPSDVRKQTGSFGKAFKKHKKVLTEEKVLKWRGALNEVANI--WHSKSVSDESKFWKKIAYDI 158


                   ....*..
gi 1191008940  173 LGKINLS 179
Cdd:pfam01582  159 SNKLNGT 165
TIR smart00255
Toll - interleukin 1 - resistance;
14-150 7.88e-43

Toll - interleukin 1 - resistance;


Pssm-ID: 214587 [Multi-domain]  Cd Length: 140  Bit Score: 152.86  E-value: 7.88e-43
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940    14 YDVFPSFSG-EDVRNTFLSHFLKELDSKLIISFKDNEIERSQSLDpELKHGIRNSRIAVVVFSKNYASSSWCLNELLEIV 92
Cdd:smart00255    2 YDVFISYSGkEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAAL 80

                            90       100       110       120       130       140
                    ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940    93 KCKKEFGQL-VIPIFYHLDPSHVRKQTGDFGKIFEKTCRNKTVDEKIR-WKEALTDVANI 150
Cdd:smart00255   81 ENALEEGGLrVIPIFYEVIPSDVRKQPGKFRKVFKKNYLKWPEDEKEQfWKKALYAVPSK 140
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
586-868 1.41e-13

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 74.20  E-value: 1.41e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  586 YLPSKLRLLRFDRYPLKRLPSNFHPENLVKLQMQQSKLEKLWEGVHSLAGLRNMDLRGSKNLKEIPDLSMATNLETLKLS 665
Cdd:COG4886      1 LLLLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  666 SCSSLVELPSSIQYLNKLNDLDISYCDHLETIPtgvNLKSlyrLNLSGC--SRLKSFLDISTNISWLDID--QTAEIPSN 741
Cdd:COG4886     81 LLSLLLLGLTDLGDLTNLTELDLSGNEELSNLT---NLES---LDLSGNqlTDLPEELANLTNLKELDLSnnQLTDLPEP 154

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  742 L-RLQNLDELIL--CERVQLRTPLMTMlsPTLTRLTFSNNQsLVEVPSSIQNLNQLEHLEIMNCRnLVTLPTGI-NLESL 817
Cdd:COG4886    155 LgNLTNLKSLDLsnNQLTDLPEELGNL--TNLKELDLSNNQ-ITDLPEPLGNLTNLEELDLSGNQ-LTDLPEPLaNLTNL 230

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1191008940  818 IALDLSHCsQLRTFPDIS--TNISDLKLSYTAIEEVPLwIEKLSLLCNLDMNG 868
Cdd:COG4886    231 ETLDLSNN-QLTDLPELGnlTNLEELDLSNNQLTDLPP-LANLTNLKTLDLSN 281
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 645-830 7.40e-07

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 51.33  E-value: 7.40e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  645 KNLKEIPDLSMATNLETLKLsscsslvelpssiqYLNKlndldISYCDHLETIPtgvNLKSLY-------RL-NLSGCSR 716
Cdd:cd21340     12 KNITKIDNLSLCKNLKVLYL--------------YDNK-----ITKIENLEFLT---NLTHLYlqnnqieKIeNLENLVN 69

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  717 LKSfLDISTN-ISWLdidqtaeipSNL-RLQNLDEL-ILCERVQLRTPL------MTMLSPTLTRLTFSNNQSlvevpSS 787
Cdd:cd21340     70 LKK-LYLGGNrISVV---------EGLeNLTNLEELhIENQRLPPGEKLtfdprsLAALSNSLRVLNISGNNI-----DS 134

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....
gi 1191008940  788 IQNLNQLEHLEIMNC-RNLVTlptgiNLESLIALdLSHCSQLRT 830
Cdd:cd21340    135 LEPLAPLRNLEQLDAsNNQIS-----DLEELLDL-LSSWPSLRE 172
 
Name Accession Description Interval E-value
PLN03210 PLN03210
Resistant to P. syringae 6; Provisional
 10-1107 0e+00

Resistant to P. syringae 6; Provisional


Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 2107.61  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940   10 RNWSYDVFPSFSGEDVRNTFLSHFLKELDSKLIISFKDNEIERSQSLDPELKHGIRNSRIAVVVFSKNYASSSWCLNELL 89
Cdd:PLN03210     9 RNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELL 88

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940   90 EIVKCKKEFGQLVIPIFYHLDPSHVRKQTGDFGKIFEKTCRNKTVDEKIRWKEALTDVANILGYHIVTWDNEASMIKEIA 169
Cdd:PLN03210    89 EIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIA 168

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  170 NDILGKINLSPSNDFEDLVGIEDHITRMSSLLHLESEEVRMVGIWGPSGIGKTTIARALFSQLSCQFQSSVFIDRVFISK 249
Cdd:PLN03210   169 NDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  250 SMEVYSGANLVDYNMKLHLQRAFLAEFFDKKDIKIDHIGAMENMVKHRKALIVIDDLDDQDVLDALAGRTQWFGSGSRII 329
Cdd:PLN03210   249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRII 328

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  330 VVTRNKHFLRANGIDHIYKVCLPSNALALEMFCRSAFRKSSPPDGFMELSSEVALRAGNLPLGLNVLGSNLRGRDKGYWI 409
Cdd:PLN03210   329 VITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWM 408

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  410 DMLPRLQ-GLDGKIGKTLRVSYDGLNNRKDEAIFRHIACIFNGEKVSDIKLLLANSNLDVNIGLKNLVDRSLICERFNTV 488
Cdd:PLN03210   409 DMLPRLRnGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIV 488

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  489 EMHSLLQEMGKEIVRTQSDEPGEREFLVDLKDICDVLEDNAGTKKVLGITLDIDETDELHIHESSFKGMHNLLFLKIYTK 568
Cdd:PLN03210   489 EMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTK 568

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  569 KLDQKKEVRWHLPERFNYLPSKLRLLRFDRYPLKRLPSNFHPENLVKLQMQQSKLEKLWEGVHSLAGLRNMDLRGSKNLK 648
Cdd:PLN03210   569 KWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK 648

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  649 EIPDLSMATNLETLKLSSCSSLVELPSSIQYLNKLNDLDISYCDHLETIPTGVNLKSLYRLNLSGCSRLKSFLDISTNIS 728
Cdd:PLN03210   649 EIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNIS 728

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  729 WLDIDQTA--EIPSNLRLQNLDELILCE--------RVQLRTPLMTMLSPTLTRLTFSNNQSLVEVPSSIQNLNQLEHLE 798
Cdd:PLN03210   729 WLDLDETAieEFPSNLRLENLDELILCEmkseklweRVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLE 808

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  799 IMNCRNLVTLPTGINLESLIALDLSHCSQLRTFPDISTNISDLKLSYTAIEEVPLWIEKLSLLCNLDMNGCSNLLRVSPN 878
Cdd:PLN03210   809 IENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLN 888

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  879 ISKLKHLEGADFSDCVALTEASWNGSSSEMAK-------FLPpdyfSTVKLNFINCFNLDLKALIQNQTFSMQLILSGEE 951
Cdd:PLN03210   889 ISKLKHLETVDFSDCGALTEASWNGSPSEVAMatdnihsKLP----STVCINFINCFNLDQEALLQQQSIFKQLILSGEE 964

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  952 VPSYFAHRTTGSS---ISLPHISVCQSFFSFRGCTVIDVESFSTISVSFDIEVCCRFIDKLGNHVDSTDFPGYFRTTNLG 1028
Cdd:PLN03210   965 VPSYFTHRTTGASltnIPLLHISPCQPFFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLGNHFDSPYQPHVFSVTKKG 1044

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940 1029 AHLVIFDCCFPLNEDTTTFLDgqFNYDHMDIQFRLTNGNSQLKLKGCGILLSEDVPSL-----------DNQPCSPNILP 1097
Cdd:PLN03210  1045 SHLVIFDCCFPLNEDNAPLAE--LNYDHVDIQFRLTNKNSQLKLKGCGIRLSEDDSSLnntlpnveeadDDNPVNGSEHW 1122

                         1130
                   ....*....|
gi 1191008940 1098 DVCEDSAVER 1107
Cdd:PLN03210  1123 EDCEDSALER 1132
TIR pfam01582
TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular ...
 14-179 6.78e-66

TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades.


Pssm-ID: 396246 [Multi-domain]  Cd Length: 165  Bit Score: 219.54  E-value: 6.78e-66
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940   14 YDVFPSFSGEDVRNTFLSHFLKELDSKLIISFKD-NEIERSQSLDPELKHGIRNSRIAVVVFSKNYASSSWCLNELLEIV 92
Cdd:pfam01582    1 YDVFLSFRGSDTREWFVSHLLKELKQKGIKLFIDdRDLEPGEAIAPELLSAIEKSRRSVVVLSPNYASSGWCLDELVKIL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940   93 KCKKEFGQLVIPIFYHLDPSHVRKQTGDFGKIFEKTCRNKTVDEKIRWKEALTDVANIlgYHIVTWDNEASMIKEIANDI 172
Cdd:pfam01582   81 ECALDLGQKVIPIFYEVDPSDVRKQTGSFGKAFKKHKKVLTEEKVLKWRGALNEVANI--WHSKSVSDESKFWKKIAYDI 158


                   ....*..
gi 1191008940  173 LGKINLS 179
Cdd:pfam01582  159 SNKLNGT 165
TIR smart00255
Toll - interleukin 1 - resistance;
14-150 7.88e-43

Toll - interleukin 1 - resistance;


Pssm-ID: 214587 [Multi-domain]  Cd Length: 140  Bit Score: 152.86  E-value: 7.88e-43
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940    14 YDVFPSFSG-EDVRNTFLSHFLKELDSKLIISFKDNEIERSQSLDpELKHGIRNSRIAVVVFSKNYASSSWCLNELLEIV 92
Cdd:smart00255    2 YDVFISYSGkEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAAL 80

                            90       100       110       120       130       140
                    ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940    93 KCKKEFGQL-VIPIFYHLDPSHVRKQTGDFGKIFEKTCRNKTVDEKIR-WKEALTDVANI 150
Cdd:smart00255   81 ENALEEGGLrVIPIFYEVIPSDVRKQPGKFRKVFKKNYLKWPEDEKEQfWKKALYAVPSK 140
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
586-868 1.41e-13

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 74.20  E-value: 1.41e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  586 YLPSKLRLLRFDRYPLKRLPSNFHPENLVKLQMQQSKLEKLWEGVHSLAGLRNMDLRGSKNLKEIPDLSMATNLETLKLS 665
Cdd:COG4886      1 LLLLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  666 SCSSLVELPSSIQYLNKLNDLDISYCDHLETIPtgvNLKSlyrLNLSGC--SRLKSFLDISTNISWLDID--QTAEIPSN 741
Cdd:COG4886     81 LLSLLLLGLTDLGDLTNLTELDLSGNEELSNLT---NLES---LDLSGNqlTDLPEELANLTNLKELDLSnnQLTDLPEP 154

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  742 L-RLQNLDELIL--CERVQLRTPLMTMlsPTLTRLTFSNNQsLVEVPSSIQNLNQLEHLEIMNCRnLVTLPTGI-NLESL 817
Cdd:COG4886    155 LgNLTNLKSLDLsnNQLTDLPEELGNL--TNLKELDLSNNQ-ITDLPEPLGNLTNLEELDLSGNQ-LTDLPEPLaNLTNL 230

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1191008940  818 IALDLSHCsQLRTFPDIS--TNISDLKLSYTAIEEVPLwIEKLSLLCNLDMNG 868
Cdd:COG4886    231 ETLDLSNN-QLTDLPELGnlTNLEELDLSNNQLTDLPP-LANLTNLKTLDLSN 281
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
656-893 2.80e-10

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 63.80  E-value: 2.80e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  656 ATNLETLKLSSCSSLVELPSSIQYLNKLNDLDISYCDHLETIPTGVNLKSLYRLNLSGCSRLKSFLDISTNISWLDIDQT 735
Cdd:COG4886      1 LLLLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  736 AEIPSNLRLQNLDELILCERVQLRTPLMTMLSPTLTRLTFSNNQsLVEVPSSIQNLNQLEHLEIMNCrNLVTLPTGI-NL 814
Cdd:COG4886     81 LLSLLLLGLTDLGDLTNLTELDLSGNEELSNLTNLESLDLSGNQ-LTDLPEELANLTNLKELDLSNN-QLTDLPEPLgNL 158

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  815 ESLIALDLSHCsQLRTFPDISTNISDLK---LSYTAIEEVPLWIEKLSLLCNLDMNGCsNLLRVSPNISKLKHLEGADFS 891
Cdd:COG4886    159 TNLKSLDLSNN-QLTDLPEELGNLTNLKeldLSNNQITDLPEPLGNLTNLEELDLSGN-QLTDLPEPLANLTNLETLDLS 236


                   ..
gi 1191008940  892 DC 893
Cdd:COG4886    237 NN 238
TIR_2 pfam13676
TIR domain; This is a family of Toll-like receptors.
 16-113 3.49e-08

TIR domain; This is a family of Toll-like receptors.


Pssm-ID: 463954 [Multi-domain]  Cd Length: 118  Bit Score: 52.70  E-value: 3.49e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940   16 VFPSFSGED---VRNtfLSHFLKELDSKLIISFKDneIERSQSLDPELKHGIRNSRIAVVVFSKNYASSSWCLNElLEIV 92
Cdd:pfam13676    1 VFISYAGEDrawAEW--LADALEAAGYRVWLDRWD--IRPGDDWVEEIEEAIENSDRVLVVLSPNYLESPWCRAE-WEAA 75

                           90       100
                   ....*....|....*....|.
gi 1191008940   93 KCKKEFGQLVIPIFYHLDPSH 113
Cdd:pfam13676   76 LADPEGRKRLIPVRLECDLEL 96
NB-ARC pfam00931
NB-ARC domain;
190-404 1.58e-07

NB-ARC domain;


Pssm-ID: 395745 [Multi-domain]  Cd Length: 245  Bit Score: 53.92  E-value: 1.58e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  190 IEDHITRMSSLLhLESEEVRMVGIWGPSGIGKTTIARALF---SQLSCQFQSSVFidrVFISKSMEVYsganlvdynmkl 266
Cdd:pfam00931    1 REDMVEKVIGKL-SEKDEPGIVGIHGMGGVGKTTLAAQIFndfDEVEGHFDSVAW---VVVSKTFTIS------------ 64

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  267 HLQRAFLAEFF---DKKDIKIDHIGAME--NMVKHRKALIVIDDLDDQDVLDALAGRTQWFGSGSRIIVVTRNKHFL-RA 340
Cdd:pfam00931   65 TLQQTILQNLGlseDDWDNKEEGELARKirRALLTKRFLLVLDDVWDEEDWDKIGIPLPDRENGCRVLLTTRSEEVAgRV 144

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1191008940  341 NGIDHIYKVCLPSNALALEMFCRSAFRKSSPPDGFME-LSSEVALRAGNLPLGLNVLGSNLRGRD 404
Cdd:pfam00931  145 GGPSDPHEVELLEPDEAWELFENKVFPKTLGECELLEdVAKEIVEKCRGLPLALKVLGGLLSCKK 209
PLN03194 PLN03194
putative disease resistance protein; Provisional
 15-115 1.76e-07

putative disease resistance protein; Provisional


Pssm-ID: 215626 [Multi-domain]  Cd Length: 187  Bit Score: 52.52  E-value: 1.76e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940   15 DVFPSFSGEDVRNTFLSHFLKELDSKLIISFKDNE-IERSQSLDPELKHGIRNSRIAVVVFSKNYASSSWCLNELLEIVK 93
Cdd:PLN03194    28 DVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKnMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELALIME 107

                           90       100
                   ....*....|....*....|..
gi 1191008940   94 CKKEfgqlVIPIFYHLDPSHVR 115
Cdd:PLN03194   108 SKKR----VIPIFCDVKPSQLR 125
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
580-846 3.24e-07

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 54.17  E-value: 3.24e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  580 LPERFNYLPsKLRLLRFDRYPLKRLPSNFHP-ENLVKLQMQQSKLEKLWEGVHSLAGLRNMDLRGSKnLKEIPD-LSMAT 657
Cdd:COG4886    151 LPEPLGNLT-NLKSLDLSNNQLTDLPEELGNlTNLKELDLSNNQITDLPEPLGNLTNLEELDLSGNQ-LTDLPEpLANLT 228

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  658 NLETLKLSSCSsLVELPSsIQYLNKLNDLDISYCdHLETIPTGVNLKSLYRLNLSGCSRLKSFLDISTNISWLDIDQTAE 737
Cdd:COG4886    229 NLETLDLSNNQ-LTDLPE-LGNLTNLEELDLSNN-QLTDLPPLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLL 305

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  738 IPSNLRLQNLDELILCERVQLRTPLMTMLSPTLTRLTFSNNQSLVEVPSSIQNLNQLEHLEIMNCRNLVTLPTGINLESL 817
Cdd:COG4886    306 LLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALL 385

                          250       260
                   ....*....|....*....|....*....
gi 1191008940  818 IALDLSHCSQLRTFPDISTNISDLKLSYT 846
Cdd:COG4886    386 LLTLLLLLLTTTAGVLLLTLALLDAVNTE 414
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 645-830 7.40e-07

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 51.33  E-value: 7.40e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  645 KNLKEIPDLSMATNLETLKLsscsslvelpssiqYLNKlndldISYCDHLETIPtgvNLKSLY-------RL-NLSGCSR 716
Cdd:cd21340     12 KNITKIDNLSLCKNLKVLYL--------------YDNK-----ITKIENLEFLT---NLTHLYlqnnqieKIeNLENLVN 69

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  717 LKSfLDISTN-ISWLdidqtaeipSNL-RLQNLDEL-ILCERVQLRTPL------MTMLSPTLTRLTFSNNQSlvevpSS 787
Cdd:cd21340     70 LKK-LYLGGNrISVV---------EGLeNLTNLEELhIENQRLPPGEKLtfdprsLAALSNSLRVLNISGNNI-----DS 134

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....
gi 1191008940  788 IQNLNQLEHLEIMNC-RNLVTlptgiNLESLIALdLSHCSQLRT 830
Cdd:cd21340    135 LEPLAPLRNLEQLDAsNNQIS-----DLEELLDL-LSSWPSLRE 172
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
586-809 1.10e-06

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 52.78  E-value: 1.10e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  586 YLPSKLRLLRFDRYPLKRLPSNFHPeNLVKLQMQQSKLEKLWEGVHSLagLRNMDLrGSKNLKEIPDlSMATNLETLKLs 665
Cdd:PRK15370   196 CIPEQITTLILDNNELKSLPENLQG-NIKTLYANSNQLTSIPATLPDT--IQEMEL-SINRITELPE-RLPSALQSLDL- 269

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  666 SCSSLVELPSSIQylNKLNDLDIsYCDHLETIPTGVNlKSLYRLNLSGCSRLKSFLDISTNISWLDIDQTA--EIPSNL- 742
Cdd:PRK15370   270 FHNKISCLPENLP--EELRYLSV-YDNSIRTLPAHLP-SGITHLNVQSNSLTALPETLPPGLKTLEAGENAltSLPASLp 345

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1191008940  743 -RLQNLDelILCERVqlrTPLMTMLSPTLTRLTFSNNqSLVEVPssiQNL-NQLEHLEiMNCRNLVTLP 809
Cdd:PRK15370   346 pELQVLD--VSKNQI---TVLPETLPPTITTLDVSRN-ALTNLP---ENLpAALQIMQ-ASRNNLVRLP 404
COG4916 COG4916
Uncharacterized conserved protein [Function unknown];
14-136 8.16e-06

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 443944 [Multi-domain]  Cd Length: 236  Bit Score: 48.57  E-value: 8.16e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940   14 YDVFPSFSGED---VRNtfLSHFLKELDSKLiisFKD-NEIERS--QSLDPELKHGIRN-SRIAVVVFSKNYASSSWCLN 86
Cdd:COG4916      1 YDVALSFAGEDrefVER--VAEALKARGIKV---FYDeNEEAELwgKDLDEYLQDIYRSeSRFVVVFLSKDYVEKKWTGL 75

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1191008940   87 ELLEIV-KCKKEFGQLVIPIfyHLDPSHVrkqTGDFGKIFEKTCRNKTVDE 136
Cdd:COG4916     76 ERRAALaRAMQRKKEYILPI--RLDDTEI---PGILATIGYIDLRNRTPEE 121
LRR_3 pfam07725
Leucine Rich Repeat; This Pfam entry includes some LRRs that fail to be detected by the ...
 612-630 2.85e-05

Leucine Rich Repeat; This Pfam entry includes some LRRs that fail to be detected by the pfam00560 model.


Pssm-ID: 429621 [Multi-domain]  Cd Length: 20  Bit Score: 41.56  E-value: 2.85e-05
                           10
                   ....*....|....*....
gi 1191008940  612 NLVKLQMQQSKLEKLWEGV 630
Cdd:pfam07725    1 NLVELNMPYSKLEKLWEGV 19
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 552-712 4.57e-05

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 47.92  E-value: 4.57e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  552 SSFKGMHNLLFLKIYTKKLDQKKEVR-WHLPErfnylpskLRLLRFDRYP-LKRLPSNFHPENLVKLQMQQSKL-EKLWE 628
Cdd:PLN00113   422 SEFTKLPLVYFLDISNNNLQGRINSRkWDMPS--------LQMLSLARNKfFGGLPDSFGSKRLENLDLSRNQFsGAVPR 493

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191008940  629 GVHSLAGLRNMDLRGSKNLKEIPD-LSMATNLETLKLSSCSSLVELPSSIQYLNKLNDLDISYCDHLETIPTGV-NLKSL 706
Cdd:PLN00113   494 KLGSLSELMQLKLSENKLSGEIPDeLSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLgNVESL 573


                   ....*.
gi 1191008940  707 YRLNLS 712
Cdd:PLN00113   574 VQVNIS 579
CDC6 COG1474
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
185-233 1.61e-03

Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];


Pssm-ID: 441083 [Multi-domain]  Cd Length: 389  Bit Score: 42.14  E-value: 1.61e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1191008940  185 EDLVGIEDHITRMSSLLH--LESEEVRMVGIWGPSGIGKTTIARALFSQLS 233
Cdd:COG1474     26 DRLPHREEEIEELASALRpaLRGERPSNVLIYGPTGTGKTAVAKYVLEELE 76
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
 209-243 1.82e-03

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 40.05  E-value: 1.82e-03
                            10        20        30
                    ....*....|....*....|....*....|....*
gi 1191008940   209 RMVGIWGPSGIGKTTIARALFSQLSCQFQSSVFID 243
Cdd:smart00382    3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37
AAA_16 pfam13191
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ...
 187-233 3.75e-03

AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.


Pssm-ID: 433025 [Multi-domain]  Cd Length: 167  Bit Score: 39.41  E-value: 3.75e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 1191008940  187 LVGIEDHITRMSSLLH-LESEEVRMVGIWGPSGIGKTTIARALFSQLS 233
Cdd:pfam13191    2 LVGREEELEQLLDALDrVRSGRPPSVLLTGEAGTGKTTLLRELLRALE 49
Udk COG0572
Uridine kinase [Nucleotide transport and metabolism]; Uridine kinase is part of the Pathway ...
 204-233 4.32e-03

Uridine kinase [Nucleotide transport and metabolism]; Uridine kinase is part of the Pathway/BioSystem: Pyrimidine salvage


Pssm-ID: 440337 [Multi-domain]  Cd Length: 206  Bit Score: 39.82  E-value: 4.32e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 1191008940  204 ESEEVRMVGIWGPSGIGKTTIARALFSQLS 233
Cdd:COG0572      3 RSGKPRIIGIAGPSGSGKTTFARRLAEQLG 32
RarA COG2256
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ...
 185-233 4.82e-03

Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];


Pssm-ID: 441857 [Multi-domain]  Cd Length: 439  Bit Score: 40.81  E-value: 4.82e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1191008940  185 EDLVGiEDHITRMSSLLH--LESEEVRMVGIWGPSGIGKTTIARAL-------FSQLS 233
Cdd:COG2256     25 DEVVG-QEHLLGPGKPLRraIEAGRLSSMILWGPPGTGKTTLARLIanatdaeFVALS 81
PRK13409 PRK13409
ribosome biogenesis/translation initiation ATPase RLI;
209-266 5.16e-03

ribosome biogenesis/translation initiation ATPase RLI;


Pssm-ID: 184037 [Multi-domain]  Cd Length: 590  Bit Score: 40.95  E-value: 5.16e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1191008940  209 RMVGIWGPSGIGKTTIARALFSQLS---CQFQSSVFIDRVFisksmEVYSGANLVDYNMKL 266
Cdd:PRK13409   100 KVTGILGPNGIGKTTAVKILSGELIpnlGDYEEEPSWDEVL-----KRFRGTELQNYFKKL 155
PRK13342 PRK13342
recombination factor protein RarA; Reviewed
 214-236 8.50e-03

recombination factor protein RarA; Reviewed


Pssm-ID: 237355 [Multi-domain]  Cd Length: 413  Bit Score: 40.07  E-value: 8.50e-03
                           10        20
                   ....*....|....*....|...
gi 1191008940  214 WGPSGIGKTTIARALFSQLSCQF 236
Cdd:PRK13342    42 WGPPGTGKTTLARIIAGATDAPF 64
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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