NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1149788207|ref|XP_020155944|]
View 

uncharacterized protein LOC109741278 [Aegilops tauschii subsp. strangulata]

Protein Classification

DUF1677 domain-containing protein( domain architecture ID 10546055)

DUF1677 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF1677 pfam07911
Protein of unknown function (DUF1677); The sequences found in this family are all derived from ...
 4-79 3.32e-32

Protein of unknown function (DUF1677); The sequences found in this family are all derived from hypothetical plant proteins of unknown function. The region features a number of highly conserved cysteine residues.


:

Pssm-ID: 462314  Cd Length: 89  Bit Score: 107.65  E-value: 3.32e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149788207  4 VESAKCECCELREDCTRGYIVGVKADFGGRWLCGLCSEAVREEGRKR----GMEAALQDHMAFCAGWCRGK--DPALRVA 77
Cdd:pfam07911  1 VESAKCECCGLTEECTPEYIARVRERFGGRWICGLCSEAVKEEVGRSkpgiSVEEALARHMSFCRKFNSSTrpNPALDLA 80


                 ..
gi 1149788207 78 DG 79
Cdd:pfam07911 81 DA 82
 
Name Accession Description Interval E-value
DUF1677 pfam07911
Protein of unknown function (DUF1677); The sequences found in this family are all derived from ...
 4-79 3.32e-32

Protein of unknown function (DUF1677); The sequences found in this family are all derived from hypothetical plant proteins of unknown function. The region features a number of highly conserved cysteine residues.


Pssm-ID: 462314  Cd Length: 89  Bit Score: 107.65  E-value: 3.32e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149788207  4 VESAKCECCELREDCTRGYIVGVKADFGGRWLCGLCSEAVREEGRKR----GMEAALQDHMAFCAGWCRGK--DPALRVA 77
Cdd:pfam07911  1 VESAKCECCGLTEECTPEYIARVRERFGGRWICGLCSEAVKEEVGRSkpgiSVEEALARHMSFCRKFNSSTrpNPALDLA 80


                 ..
gi 1149788207 78 DG 79
Cdd:pfam07911 81 DA 82
 
Name Accession Description Interval E-value
DUF1677 pfam07911
Protein of unknown function (DUF1677); The sequences found in this family are all derived from ...
 4-79 3.32e-32

Protein of unknown function (DUF1677); The sequences found in this family are all derived from hypothetical plant proteins of unknown function. The region features a number of highly conserved cysteine residues.


Pssm-ID: 462314  Cd Length: 89  Bit Score: 107.65  E-value: 3.32e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1149788207  4 VESAKCECCELREDCTRGYIVGVKADFGGRWLCGLCSEAVREEGRKR----GMEAALQDHMAFCAGWCRGK--DPALRVA 77
Cdd:pfam07911  1 VESAKCECCGLTEECTPEYIARVRERFGGRWICGLCSEAVKEEVGRSkpgiSVEEALARHMSFCRKFNSSTrpNPALDLA 80


                 ..
gi 1149788207 78 DG 79
Cdd:pfam07911 81 DA 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH