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Conserved domains on  [gi|1104680504|ref|XP_019072400|]
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psbP domain-containing protein 4, chloroplastic isoform X2 [Vitis vinifera]

Protein Classification

DcrB/PsbP domain-containing protein; DUF1795 domain-containing protein( domain architecture ID 10010608)

DcrB/PsbP domain-containing protein similar to Chlamydomonas reinhardtii oxygen-evolving enhancer protein 2 that may be involved in the regulation of photosystem II| uncharacterized DUF1795 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN00066 PLN00066
PsbP domain-containing protein 4; Provisional
 5-173 1.84e-125

PsbP domain-containing protein 4; Provisional


:

Pssm-ID: 215046  Cd Length: 262  Bit Score: 352.96  E-value: 1.84e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104680504   5 GWRTYRRPDEKSGGHGVGWSPIIPYIFSVPSGWEEVPVSIADLGGTEIDLRFANSKEGRLFVIVAPVLRFADNLGDDAKV 84
Cdd:PLN00066   91 GWRTYRRPEGKSGGHGVGWSEITPYSFKVPQGWEEVPVSIADLGGTEIDLRFASDKEGRLKVVVAPVLRFADNLGDNATI 170

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104680504  85 EKIGPPEKVIAAFGPEVIGENV-EGKVLSMGVVEHSGRTYYQFELePPHVLITATAAGNRLYLFSVTASGLQWKRHYKDL 163
Cdd:PLN00066  171 EEIGPPEKVISGFGPELIGEPVeEGKVLSMEVAEHSGRTYYQFEL-PPHTLVTATAAGNRVYIFSVTANGLQWKRHYKDL 249

                         170
                  ....*....|
gi 1104680504 164 KKIADSFRVV 173
Cdd:PLN00066  250 KRIAKSFRVV 259
 
Name Accession Description Interval E-value
PLN00066 PLN00066
PsbP domain-containing protein 4; Provisional
 5-173 1.84e-125

PsbP domain-containing protein 4; Provisional


Pssm-ID: 215046  Cd Length: 262  Bit Score: 352.96  E-value: 1.84e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104680504   5 GWRTYRRPDEKSGGHGVGWSPIIPYIFSVPSGWEEVPVSIADLGGTEIDLRFANSKEGRLFVIVAPVLRFADNLGDDAKV 84
Cdd:PLN00066   91 GWRTYRRPEGKSGGHGVGWSEITPYSFKVPQGWEEVPVSIADLGGTEIDLRFASDKEGRLKVVVAPVLRFADNLGDNATI 170

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104680504  85 EKIGPPEKVIAAFGPEVIGENV-EGKVLSMGVVEHSGRTYYQFELePPHVLITATAAGNRLYLFSVTASGLQWKRHYKDL 163
Cdd:PLN00066  171 EEIGPPEKVISGFGPELIGEPVeEGKVLSMEVAEHSGRTYYQFEL-PPHTLVTATAAGNRVYIFSVTANGLQWKRHYKDL 249

                         170
                  ....*....|
gi 1104680504 164 KKIADSFRVV 173
Cdd:PLN00066  250 KRIAKSFRVV 259
PsbP pfam01789
PsbP; This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II ...
 29-172 1.26e-13

PsbP; This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+.


Pssm-ID: 426435  Cd Length: 155  Bit Score: 64.56  E-value: 1.26e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104680504  29 YIFSVPSGWEEVPVSiadlGGTeiDLRF---ANSKEgRLFVIVAPVlrfadnlGDDAKVEKIGPPEKVIAAFGPEVI--- 102
Cdd:pfam01789  13 YSFLYPSGWQEVKVS----GGP--DVVFhdlIESTE-NVSVVISPV-------SKDKSLTDLGSPEEVGYRLVKQVIapp 78

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1104680504 103 GENVEGKVLSMGVVEHSGRTYYQFE--LEPP-----HVLITATAAGNRLYLFSVTASGLQWKRHYKDLKKIADSFRV 172
Cdd:pfam01789  79 ESGREAELIDAEEREVDGKTYYDLEytVKSPdgqerHNLATVAVSNGKLYTLTASTPEKRWDKVKDKLETVVDSFTV 155
 
Name Accession Description Interval E-value
PLN00066 PLN00066
PsbP domain-containing protein 4; Provisional
 5-173 1.84e-125

PsbP domain-containing protein 4; Provisional


Pssm-ID: 215046  Cd Length: 262  Bit Score: 352.96  E-value: 1.84e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104680504   5 GWRTYRRPDEKSGGHGVGWSPIIPYIFSVPSGWEEVPVSIADLGGTEIDLRFANSKEGRLFVIVAPVLRFADNLGDDAKV 84
Cdd:PLN00066   91 GWRTYRRPEGKSGGHGVGWSEITPYSFKVPQGWEEVPVSIADLGGTEIDLRFASDKEGRLKVVVAPVLRFADNLGDNATI 170

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104680504  85 EKIGPPEKVIAAFGPEVIGENV-EGKVLSMGVVEHSGRTYYQFELePPHVLITATAAGNRLYLFSVTASGLQWKRHYKDL 163
Cdd:PLN00066  171 EEIGPPEKVISGFGPELIGEPVeEGKVLSMEVAEHSGRTYYQFEL-PPHTLVTATAAGNRVYIFSVTANGLQWKRHYKDL 249

                         170
                  ....*....|
gi 1104680504 164 KKIADSFRVV 173
Cdd:PLN00066  250 KRIAKSFRVV 259
PLN00067 PLN00067
PsbP domain-containing protein 6; Provisional
 28-172 5.48e-28

PsbP domain-containing protein 6; Provisional


Pssm-ID: 177697  Cd Length: 263  Bit Score: 104.99  E-value: 5.48e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104680504  28 PYIFSVPSGWEevPVSIAD-LGGTE---------IDLRFANSKEGRLFVIVAPVLRFADNlgDDAKVEKIGPPEKVIAAF 97
Cdd:PLN00067  106 PYQFILPPTWK--QTRVANiLSGNYcqpkcaepwVEVKFEDEKQGKVQVVASPLIRLTNK--PNATIEEIGSPEKLIASL 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104680504  98 GPEVIGENVE-GKVLSMGVVEHSGRTYYQFELEPP------HVLITATAAGNRLYLFSVTASGLQWKRHYKDLKKIADSF 170
Cdd:PLN00067  182 GPFVTGNSYDpDELLETSVEKIGDQTYYKYVLETPfaltgsHNLAKATAKGNTVVLFVVSASDKQWQSSEKTLKAILDSF 261


                  ..
gi 1104680504 171 RV 172
Cdd:PLN00067  262 QA 263
PsbP pfam01789
PsbP; This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II ...
 29-172 1.26e-13

PsbP; This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+.


Pssm-ID: 426435  Cd Length: 155  Bit Score: 64.56  E-value: 1.26e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104680504  29 YIFSVPSGWEEVPVSiadlGGTeiDLRF---ANSKEgRLFVIVAPVlrfadnlGDDAKVEKIGPPEKVIAAFGPEVI--- 102
Cdd:pfam01789  13 YSFLYPSGWQEVKVS----GGP--DVVFhdlIESTE-NVSVVISPV-------SKDKSLTDLGSPEEVGYRLVKQVIapp 78

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1104680504 103 GENVEGKVLSMGVVEHSGRTYYQFE--LEPP-----HVLITATAAGNRLYLFSVTASGLQWKRHYKDLKKIADSFRV 172
Cdd:pfam01789  79 ESGREAELIDAEEREVDGKTYYDLEytVKSPdgqerHNLATVAVSNGKLYTLTASTPEKRWDKVKDKLETVVDSFTV 155
PLN00042 PLN00042
photosystem II oxygen-evolving enhancer protein 2; Provisional
 27-173 4.52e-09

photosystem II oxygen-evolving enhancer protein 2; Provisional


Pssm-ID: 177676  Cd Length: 260  Bit Score: 54.04  E-value: 4.52e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104680504  27 IPYI-----FSVPSGWEevPVSIADLGGTeiDLRF-----ANSKegrLFVIVAPVlrfadnlgDDAKVEKIGPPEKVIAA 96
Cdd:PLN00042   93 LPYNgdgfkLLVPSKWN--PSKEREFPGQ--VLRFednfdATSN---LSVMVTPT--------DKKSITDYGSPEEFLSK 157

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104680504  97 ----FGPEV-IGENV-EG-----KVLSMGVVEHS-----GRTYYQFELEP---------PHVLITATAAGNRLYLFSVTA 151
Cdd:PLN00042  158 vsylLGKQAySGETAsEGgfdanAVATAAVLESStqevgGKPYYYLSVLTrtadgdeggKHQLITATVSDGKLYICKAQA 237

                         170       180
                  ....*....|....*....|...
gi 1104680504 152 SGLQW-KRHYKDLKKIADSFRVV 173
Cdd:PLN00042  238 GDKRWfKGARKFVEGAASSFSVA 260
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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