|
Name |
Accession |
Description |
Interval |
E-value |
| JAKMIP_CC3 |
pfam16034 |
JAKMIP CC3 domain; This domain is found at the C-terminus of proteins belonging to the JAKMIP ... |
415-612 |
4.99e-74 |
|
JAKMIP CC3 domain; This domain is found at the C-terminus of proteins belonging to the JAKMIP family (Janus kinase and microtubule-interacting proteins) and is predicted to be a coiled coil. It interacts with the Janus family kinases Tyk2 and Jak1.
Pssm-ID: 464986 [Multi-domain] Cd Length: 199 Bit Score: 239.78 E-value: 4.99e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 415 ERERLLRSKRHRGKSLKPPKKH-VVETFFGFDEE-SVDSETlSETSYNTDRTDRTPATPEEDLDETTTREEADLRFCQLT 492
Cdd:pfam16034 1 ERDKLIRARKQRRKEKKKKLRDmVVETFFGYDEEaSVDSET-SSLSYNTDRTDSTPATPDEDLDEGVAAEEAELRFRQLT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 493 REYQALQRAYALLQEQVGGTLDAEREARTREQLQADLLRCQAKIEDLEKLLVEKGQDAAWVEEKQVLMRTNQDLLEKIYR 572
Cdd:pfam16034 80 REYQALQRAYALLQEQSGGTLDAEREAKTREQLQAELRRAQSRIEDLESALAQKGQDSKWVEEKQALIRRNQELVEKIRI 159
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1046858756 573 LEMEENQLKSEMQDAKDQNELLEFRVLELEERERRSPAFN 612
Cdd:pfam16034 160 MEQEEGRLKNEIQDARDQNELLEFRILELEERERRSPAIN 199
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
24-607 |
9.68e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.81 E-value: 9.68e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 24 EELRAKLTNIQIEFQQEKSKvgKLRERLQEAKLEREQEQRRhtayISELKAKLhEEKTKELQALREALIRQHEQEAARTA 103
Cdd:COG1196 223 KELEAELLLLKLRELEAELE--ELEAELEELEAELEELEAE----LAELEAEL-EELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 104 kikegELQRLQATLNVLRDGAADkvktalLADAREEARRTFDGERQRLQQEILELKAARKQAEEAlsncmQADKAKAADL 183
Cdd:COG1196 296 -----ELARLEQDIARLEERRRE------LEERLEELEEELAELEEELEELEEELEELEEELEEA-----EEELEEAEAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 184 RAAYQAHQDEVHRIKRECERDIRRLMDEIKGKERVILALEKELGVQAGQTQRLLLQKEALDEQLVQVKEAERHHSSPKRE 263
Cdd:COG1196 360 LAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEE 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 264 LppgigdmaelmggqdqHMDERDVRRFQLKIAELNSVIRKLEDRNTLLADERNELLKRSRETEVQLKPLVEKNKRMNKKN 343
Cdd:COG1196 440 E----------------EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 344 EDLLHSIQRMEEKLK--------SLTRENVEMKEKLSAQASLKRHTSLNDLSLTRDEQEIEFLRLQVLEQQHVIDDLSLE 415
Cdd:COG1196 504 EGFLEGVKAALLLAGlrglagavAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIR 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 416 RERLLRSKRHRGKSLKPPKKHVVETFFGFDEESVDSETLSETSYNTDRTDRTPATPEEDLDETTTREEADLRFCQLTREY 495
Cdd:COG1196 584 ARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLT 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 496 QALQRAYALLQEQvggtLDAEREARTREQLQADLLRCQAKIEDLEKLLVEKGQDAAWVEEKQVLMRTNQDLLEKIYRLEM 575
Cdd:COG1196 664 GGSRRELLAALLE----AEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLE 739
|
570 580 590
....*....|....*....|....*....|..
gi 1046858756 576 EENQLKSEMQDAKDQNELLEFRVLELEERERR 607
Cdd:COG1196 740 ELLEEEELLEEEALEELPEPPDLEELERELER 771
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
56-781 |
2.68e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.24 E-value: 2.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 56 LEREQEQRRHTAYISELKAKLHEEKTKELQALREALIRQHEQEAARTAKIKEgELQRLQATLNVLRDGAADKVKtaLLAD 135
Cdd:TIGR02169 200 LERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEE-ELEKLTEEISELEKRLEEIEQ--LLEE 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 136 AREEARRTFDGERQRLQQEILELKAARKQAEEALSNC------MQADKAKAADLRAAYQAHQDEVHRIKRECERDIRRLM 209
Cdd:TIGR02169 277 LNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKereledAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLT 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 210 DEIKGKERVILALEKELgvqagqtqrlllqkEALDEQLvqvKEAERHHSSPKRELPPGIGDMAELMGGQDQHMDERdvRR 289
Cdd:TIGR02169 357 EEYAELKEELEDLRAEL--------------EEVDKEF---AETRDELKDYREKLEKLKREINELKRELDRLQEEL--QR 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 290 FQLKIAELNSVIRKLEDRNTLLADERNELLKRSRETEVQLKPLVEKNKRMNKKNEDLLHSIQRMEEKLKSLTRENVEMKE 369
Cdd:TIGR02169 418 LSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEA 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 370 KLSAQASLKRHTSLNDLSLTRDEQEIEFLRLQVLE-----------------QQHVIDDLSLERERLLRSKRHRG----- 427
Cdd:TIGR02169 498 QARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSvgeryataievaagnrlNNVVVEDDAVAKEAIELLKRRKAgratf 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 428 -------KSLKPPKKHVVETFFGFDEESVDSETLSETSYNTDRTDRTPAtpeEDLdETTTREEADLRFcqLTREYQALQR 500
Cdd:TIGR02169 578 lplnkmrDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYVFGDTLVV---EDI-EAARRLMGKYRM--VTLEGELFEK 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 501 AYALlqeqVGGTLDAEREARTREQLQADLLRCQAKIEDLEKLLvekgqdaawveekqvlmrtnQDLLEKIYRLEMEENQL 580
Cdd:TIGR02169 652 SGAM----TGGSRAPRGGILFSRSEPAELQRLRERLEGLKREL--------------------SSLQSELRRIENRLDEL 707
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 581 KSEMQDAKDQNELLEFRVLELEERERRSPAFNLQITTFpennssalqlfchqegvkwLKQIEGTEAALTQKMMDLEKEKD 660
Cdd:TIGR02169 708 SQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEED-------------------LSSLEQEIENVKSELKELEARIE 768
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 661 QFSRQKGYLEQELDYRKEALDQAYLvgpEKIQDLEATLYNALQQEPGRRASESLSASQREDLQAAVEKVRRQLLRQSREF 740
Cdd:TIGR02169 769 ELEEDLHKLEEALNDLEARLSHSRI---PEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDL 845
|
730 740 750 760
....*....|....*....|....*....|....*....|...
gi 1046858756 741 DSQI--LRERMELLQQaqqKIREMEGKLELQRRQLKELEEKHS 781
Cdd:TIGR02169 846 KEQIksIEKEIENLNG---KKEELEEELEELEAALRDLESRLG 885
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
38-246 |
6.11e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.14 E-value: 6.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 38 QQEKSKVGKLRERLQEAKLEREQEQRRHTAYISELKAKLHEEKTKELQALREALIRQHEQEAARTAKIKEGELQRLQATL 117
Cdd:PTZ00121 1571 KAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAE 1650
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 118 NVLRDGAADKVKTALLADAREEARRTFDGERQRLQQEILELKAARKQAEEA-----LSNCMQADKAKAADLRAAYQAHQD 192
Cdd:PTZ00121 1651 ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAkkaeeLKKKEAEEKKKAEELKKAEEENKI 1730
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1046858756 193 EVHRIKRECERDIRRL----MDEIKGKERVILALEKELGVQAGQTQRLLLQKEALDEQ 246
Cdd:PTZ00121 1731 KAEEAKKEAEEDKKKAeeakKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEE 1788
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
42-779 |
6.42e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.89 E-value: 6.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 42 SKVGKLRERLQEAKLEREQEQRRHTAYISELKAKLHEEKTKELQALREALIRQHEQEAARTAKIKEgELQRLQATLNVLR 121
Cdd:pfam02463 165 SRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLD-YLKLNEERIDLLQ 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 122 DGAADKVKTALLADAREEARRtfdgERQRLQQEILELKAARKQAEEALSNCMQADKAKAADLRAAYQAHQDEVHRIKREC 201
Cdd:pfam02463 244 ELLRDEQEEIESSKQEIEKEE----EKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKES 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 202 ERDIRRLMDEIKGKERVILALEKELGVQAGQTQRLLLQKEALDEQLVQVKEAERHHSSPKRELPPGIGDMAELMgGQDQH 281
Cdd:pfam02463 320 EKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLK-EEELE 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 282 MDERDVRRFQLKIAELNSVIRKLEDRNTLLADERNELLKRS----------RETEVQLKPLVEKNKRMNKKNEDLLHSIQ 351
Cdd:pfam02463 399 LKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIelkqgklteeKEELEKQELKLLKDELELKKSEDLLKETQ 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 352 RMEEKLKSLTRENVEMKEKLSAQASLKRHTSLNDLSLTRDEQEIEFLRLQVL--EQQHVIDDLSLERERLLRSKRHRGKS 429
Cdd:pfam02463 479 LVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRlgDLGVAVENYKVAISTAVIVEVSATAD 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 430 LKPPKKHVVETFFGFDEESVDSETLSETSYNTDRTDRTP---ATPEEDLDETTTREEADLRFCQLTREYQALQRAYALLQ 506
Cdd:pfam02463 559 EVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLeidPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLK 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 507 EQVGGTLDAEREARTREQLQADLLRCQAKIEDLEK---LLVEKGQDAAWVEEKQVLMRTNQDLLEKIYRLEMEENQLKSE 583
Cdd:pfam02463 639 ESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKellEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLE 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 584 MQDAKDQNELLEFRVLELEERERRSPAFNLQITTFPENNSSALQLFCHQEGVKWLKQIEGTEAALTQKMMDLEKEKD--- 660
Cdd:pfam02463 719 AEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKlka 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 661 -QFSRQKGYLEQELDYRKEALDQAYLVGPEKIQDLEATLYNALQQEPGRRASESLSASQREDLQAAVEKVRRQLLRQSRE 739
Cdd:pfam02463 799 qEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEE 878
|
730 740 750 760
....*....|....*....|....*....|....*....|
gi 1046858756 740 FDSQILRERMELLQQAQQKIREMEGKLELQRRQLKELEEK 779
Cdd:pfam02463 879 LEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENE 918
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
548-743 |
6.79e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 6.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 548 QDAAWVEEKQVLMRTNQDLLEkiyRLEMEENQLKSEMQDAKDQNELLEfrvLELEERERRSPAFN-LQITTFPENNSSAL 626
Cdd:COG4913 593 DDRRRIRSRYVLGFDNRAKLA---ALEAELAELEEELAEAEERLEALE---AELDALQERREALQrLAEYSWDEIDVASA 666
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 627 QLFCHQ---------EGVKWLKQIEGTEAALTQKMMDLEKEKDQFSRQKGYLEQELDYRKEALDQAY--------LVGPE 689
Cdd:COG4913 667 EREIAEleaelerldASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQdrleaaedLARLE 746
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1046858756 690 KIQDLEATLYNALQQEPGRRASESLSaSQREDLQAAVEKVRRQLLRQSREFDSQ 743
Cdd:COG4913 747 LRALLEERFAAALGDAVERELRENLE-ERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| JAKMIP_CC3 |
pfam16034 |
JAKMIP CC3 domain; This domain is found at the C-terminus of proteins belonging to the JAKMIP ... |
415-612 |
4.99e-74 |
|
JAKMIP CC3 domain; This domain is found at the C-terminus of proteins belonging to the JAKMIP family (Janus kinase and microtubule-interacting proteins) and is predicted to be a coiled coil. It interacts with the Janus family kinases Tyk2 and Jak1.
Pssm-ID: 464986 [Multi-domain] Cd Length: 199 Bit Score: 239.78 E-value: 4.99e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 415 ERERLLRSKRHRGKSLKPPKKH-VVETFFGFDEE-SVDSETlSETSYNTDRTDRTPATPEEDLDETTTREEADLRFCQLT 492
Cdd:pfam16034 1 ERDKLIRARKQRRKEKKKKLRDmVVETFFGYDEEaSVDSET-SSLSYNTDRTDSTPATPDEDLDEGVAAEEAELRFRQLT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 493 REYQALQRAYALLQEQVGGTLDAEREARTREQLQADLLRCQAKIEDLEKLLVEKGQDAAWVEEKQVLMRTNQDLLEKIYR 572
Cdd:pfam16034 80 REYQALQRAYALLQEQSGGTLDAEREAKTREQLQAELRRAQSRIEDLESALAQKGQDSKWVEEKQALIRRNQELVEKIRI 159
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1046858756 573 LEMEENQLKSEMQDAKDQNELLEFRVLELEERERRSPAFN 612
Cdd:pfam16034 160 MEQEEGRLKNEIQDARDQNELLEFRILELEERERRSPAIN 199
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
24-607 |
9.68e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.81 E-value: 9.68e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 24 EELRAKLTNIQIEFQQEKSKvgKLRERLQEAKLEREQEQRRhtayISELKAKLhEEKTKELQALREALIRQHEQEAARTA 103
Cdd:COG1196 223 KELEAELLLLKLRELEAELE--ELEAELEELEAELEELEAE----LAELEAEL-EELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 104 kikegELQRLQATLNVLRDGAADkvktalLADAREEARRTFDGERQRLQQEILELKAARKQAEEAlsncmQADKAKAADL 183
Cdd:COG1196 296 -----ELARLEQDIARLEERRRE------LEERLEELEEELAELEEELEELEEELEELEEELEEA-----EEELEEAEAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 184 RAAYQAHQDEVHRIKRECERDIRRLMDEIKGKERVILALEKELGVQAGQTQRLLLQKEALDEQLVQVKEAERHHSSPKRE 263
Cdd:COG1196 360 LAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEE 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 264 LppgigdmaelmggqdqHMDERDVRRFQLKIAELNSVIRKLEDRNTLLADERNELLKRSRETEVQLKPLVEKNKRMNKKN 343
Cdd:COG1196 440 E----------------EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 344 EDLLHSIQRMEEKLK--------SLTRENVEMKEKLSAQASLKRHTSLNDLSLTRDEQEIEFLRLQVLEQQHVIDDLSLE 415
Cdd:COG1196 504 EGFLEGVKAALLLAGlrglagavAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIR 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 416 RERLLRSKRHRGKSLKPPKKHVVETFFGFDEESVDSETLSETSYNTDRTDRTPATPEEDLDETTTREEADLRFCQLTREY 495
Cdd:COG1196 584 ARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLT 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 496 QALQRAYALLQEQvggtLDAEREARTREQLQADLLRCQAKIEDLEKLLVEKGQDAAWVEEKQVLMRTNQDLLEKIYRLEM 575
Cdd:COG1196 664 GGSRRELLAALLE----AEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLE 739
|
570 580 590
....*....|....*....|....*....|..
gi 1046858756 576 EENQLKSEMQDAKDQNELLEFRVLELEERERR 607
Cdd:COG1196 740 ELLEEEELLEEEALEELPEPPDLEELERELER 771
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
13-541 |
1.19e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.26 E-value: 1.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 13 ETETDSVQMANEELRAKLTNIQIEFQQEKSKVGKLRERLQEA---------KLEREQEQRRHTAYISELKAKLHEEKTKE 83
Cdd:COG1196 245 EAELEELEAELEELEAELAELEAELEELRLELEELELELEEAqaeeyellaELARLEQDIARLEERRRELEERLEELEEE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 84 LQALREALIRQHEQEAARTAKIKEgELQRLQATLNVLRDGAADKVKTALLADAREEARRTFDGERQRLQQEILELKAARK 163
Cdd:COG1196 325 LAELEEELEELEEELEELEEELEE-AEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 164 QAEEALSNcMQADKAKAADLRAAYQAHQDEVHRIKRECERDIRRLMDEIKGKERVILALEKELGVQAGQTQRLLLQKEAL 243
Cdd:COG1196 404 ELEEAEEA-LLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAEL 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 244 DEQLVQVKEAERHHSSPKRELPPGIGDMAELMGGQDQHMDERDVRRFQLKIAELNSVIRKLE--------DRNTLLADER 315
Cdd:COG1196 483 LEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALaaalqnivVEDDEVAAAA 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 316 NELLKRSRETEVQLKPLvekNKRMNKKNEDLLHSIQRMEEKLKSLTRENVEMKEKLSAQASLKRHTSLNDLSLTRDEQEI 395
Cdd:COG1196 563 IEYLKAAKAGRATFLPL---DKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRA 639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 396 EFLRLQVLEQQHVIDDLSLERERLLRSKRHRGKSLKPPKKHVVEtffgFDEESVDSETLSETSYNTDRTDRTPATPEEDL 475
Cdd:COG1196 640 VTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEE----LAERLAEEELELEEALLAEEEEERELAEAEEE 715
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1046858756 476 DETTTREEADLRFCQLTREYQALQRAYALLQEQVGGTLDAEREARTREQLQADLLRCQAKIEDLEK 541
Cdd:COG1196 716 RLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGP 781
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
56-781 |
2.68e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.24 E-value: 2.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 56 LEREQEQRRHTAYISELKAKLHEEKTKELQALREALIRQHEQEAARTAKIKEgELQRLQATLNVLRDGAADKVKtaLLAD 135
Cdd:TIGR02169 200 LERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEE-ELEKLTEEISELEKRLEEIEQ--LLEE 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 136 AREEARRTFDGERQRLQQEILELKAARKQAEEALSNC------MQADKAKAADLRAAYQAHQDEVHRIKRECERDIRRLM 209
Cdd:TIGR02169 277 LNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKereledAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLT 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 210 DEIKGKERVILALEKELgvqagqtqrlllqkEALDEQLvqvKEAERHHSSPKRELPPGIGDMAELMGGQDQHMDERdvRR 289
Cdd:TIGR02169 357 EEYAELKEELEDLRAEL--------------EEVDKEF---AETRDELKDYREKLEKLKREINELKRELDRLQEEL--QR 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 290 FQLKIAELNSVIRKLEDRNTLLADERNELLKRSRETEVQLKPLVEKNKRMNKKNEDLLHSIQRMEEKLKSLTRENVEMKE 369
Cdd:TIGR02169 418 LSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEA 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 370 KLSAQASLKRHTSLNDLSLTRDEQEIEFLRLQVLE-----------------QQHVIDDLSLERERLLRSKRHRG----- 427
Cdd:TIGR02169 498 QARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSvgeryataievaagnrlNNVVVEDDAVAKEAIELLKRRKAgratf 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 428 -------KSLKPPKKHVVETFFGFDEESVDSETLSETSYNTDRTDRTPAtpeEDLdETTTREEADLRFcqLTREYQALQR 500
Cdd:TIGR02169 578 lplnkmrDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYVFGDTLVV---EDI-EAARRLMGKYRM--VTLEGELFEK 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 501 AYALlqeqVGGTLDAEREARTREQLQADLLRCQAKIEDLEKLLvekgqdaawveekqvlmrtnQDLLEKIYRLEMEENQL 580
Cdd:TIGR02169 652 SGAM----TGGSRAPRGGILFSRSEPAELQRLRERLEGLKREL--------------------SSLQSELRRIENRLDEL 707
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 581 KSEMQDAKDQNELLEFRVLELEERERRSPAFNLQITTFpennssalqlfchqegvkwLKQIEGTEAALTQKMMDLEKEKD 660
Cdd:TIGR02169 708 SQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEED-------------------LSSLEQEIENVKSELKELEARIE 768
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 661 QFSRQKGYLEQELDYRKEALDQAYLvgpEKIQDLEATLYNALQQEPGRRASESLSASQREDLQAAVEKVRRQLLRQSREF 740
Cdd:TIGR02169 769 ELEEDLHKLEEALNDLEARLSHSRI---PEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDL 845
|
730 740 750 760
....*....|....*....|....*....|....*....|...
gi 1046858756 741 DSQI--LRERMELLQQaqqKIREMEGKLELQRRQLKELEEKHS 781
Cdd:TIGR02169 846 KEQIksIEKEIENLNG---KKEELEEELEELEAALRDLESRLG 885
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
44-605 |
5.75e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.95 E-value: 5.75e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 44 VGKLRERLQEAKLEREQEQR---RHTAYISELKAKLHE-----EKTKELQALREALIRQHEQEAARTAKIKEGELQRLQA 115
Cdd:COG1196 167 ISKYKERKEEAERKLEATEEnleRLEDILGELERQLEPlerqaEKAERYRELKEELKELEAELLLLKLRELEAELEELEA 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 116 TLNVLRDGAADKVKTALLADAREEARR----TFDGERQRLQQEILELKAARKQAEEALSNCMQADKAKAADLRAAYQAHQ 191
Cdd:COG1196 247 ELEELEAELEELEAELAELEAELEELRleleELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 192 DEVHRIKREcERDIRRLMDEIKGKERVILALEKELGVQAGQTQRLLLQKEALDEQLVQVKEAERHHSSPKRELPPGIGDM 271
Cdd:COG1196 327 ELEEELEEL-EEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 272 AELMGGQDQHMDERDVRRFQLKIAELNSVIRKLEDRNTLLAD--ERNELLKRSRETEVQLKPLVEKNKRMNKKNEDLLHS 349
Cdd:COG1196 406 EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAaeEEAELEEEEEALLELLAELLEEAALLEAALAELLEE 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 350 IQRMEEKLKSLTRENVEMKEKLSAQASLKRHTSLNDLSLT---------RDEQEIEfLRLQVLEQQHVIDDLSLERERLL 420
Cdd:COG1196 486 LAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAvavligveaAYEAALE-AALAAALQNIVVEDDEVAAAAIE 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 421 RSKRHRG-----------KSLKPPKKHVVETFFGFDEESVDSEtlsetsyntDRTDRTPATPEEDLDETTTREEADLrfc 489
Cdd:COG1196 565 YLKAAKAgratflpldkiRARAALAAALARGAIGAAVDLVASD---------LREADARYYVLGDTLLGRTLVAARL--- 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 490 qLTREYQALQRAYALLQEQVGGTLDAEREARTREQLQADLLRCQAKIEDLEKLLVEKGQDAAWVEEKQVLMRTNQDLLEK 569
Cdd:COG1196 633 -EAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAE 711
|
570 580 590
....*....|....*....|....*....|....*.
gi 1046858756 570 IYRLEMEENQLKSEMQDAKDQNELLEFRVLELEERE 605
Cdd:COG1196 712 AEEERLEEELEEEALEEQLEAEREELLEELLEEEEL 747
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
44-802 |
1.13e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 1.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 44 VGKLRERLQEA--KLEREQEQ-RRHTAYISELKAKLheeKTKELQAlrealirqheqEAARTAKIKEGELQRLQATLNVL 120
Cdd:TIGR02168 167 ISKYKERRKETerKLERTRENlDRLEDILNELERQL---KSLERQA-----------EKAERYKELKAELRELELALLVL 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 121 RdgaadkvktallADAREEARRTFDGERQRLQQEILELKAARKQAEEALSNC---MQADKAKAADLRAAYQAHQDEVHRI 197
Cdd:TIGR02168 233 R------------LEELREELEELQEELKEAEEELEELTAELQELEEKLEELrleVSELEEEIEELQKELYALANEISRL 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 198 KRECER---DIRRLMDEIKGKERVILALEKELGVQAgqtQRLLLQKEALDEQLVQVKEAERHHSSPKRELPpgigDMAEL 274
Cdd:TIGR02168 301 EQQKQIlreRLANLERQLEELEAQLEELESKLDELA---EELAELEEKLEELKEELESLEAELEELEAELE----ELESR 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 275 MGGQDQHMDE--RDVRRFQLKIAELNSVIRKLEDRNTLLADERNELLKRSRE-----TEVQLKPLVEKNKRMNKKNEDLL 347
Cdd:TIGR02168 374 LEELEEQLETlrSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEEllkklEEAELKELQAELEELEEELEELQ 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 348 HSIQRMEEKLKSLTRENVEMKEKL-SAQASLKRHTSLNDlSLTRDEQEIEFLRLQVLEQQHVIDDLSLERERLlrskrhr 426
Cdd:TIGR02168 454 EELERLEEALEELREELEEAEQALdAAERELAQLQARLD-SLERLQENLEGFSEGVKALLKNQSGLSGILGVL------- 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 427 GKSLKPPKKH--VVETFFGFDEESVDSETLSE--------TSYNTDR------TDRTPATPEEDLDETTTREEADLRFCQ 490
Cdd:TIGR02168 526 SELISVDEGYeaAIEAALGGRLQAVVVENLNAakkaiaflKQNELGRvtflplDSIKGTEIQGNDREILKNIEGFLGVAK 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 491 LTREY----------------------QALQRAYALLQEQVGGTLDAER------EARTREQLQADLLRCQAKIEDLEKL 542
Cdd:TIGR02168 606 DLVKFdpklrkalsyllggvlvvddldNALELAKKLRPGYRIVTLDGDLvrpggvITGGSAKTNSSILERRREIEELEEK 685
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 543 LVEKGQDAAWVEEKQvlmrtnQDLLEKIYRLEMEENQLKSEMQDAKDQNELLEFRVLELEERERR--SPAFNLQITTFPE 620
Cdd:TIGR02168 686 IEELEEKIAELEKAL------AELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQleERIAQLSKELTEL 759
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 621 NNSSALQLFCHQEGVKWLKQIEGTEAALTQKMMDLEKEKDQFSRQKGYLEQELDYRKEALDQA---YLVGPEKIQDLEAT 697
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLrerLESLERRIAATERR 839
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 698 LYNALQQEPGRRASESLSASQREDLQAAVEKVRRQLLRQSREFDSQI--LRERMELLQQAQQKIREMEGKLELQRRQLKE 775
Cdd:TIGR02168 840 LEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEeaLALLRSELEELSEELRELESKRSELRRELEE 919
|
810 820
....*....|....*....|....*..
gi 1046858756 776 LEEKhsfcgLEDSHAPRTRARQRISGI 802
Cdd:TIGR02168 920 LREK-----LAQLELRLEGLEVRIDNL 941
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
6-363 |
3.65e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 3.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 6 RSKGEKPETETDSVQMANEELRAKLTNIQIEFQQEKSKVGKLRERLQEAKLEREQEQRRHTAYISELKaklheEKTKELQ 85
Cdd:TIGR02169 694 QSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELK-----ELEARIE 768
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 86 ALREALIRQHEQEAARTAKIKEGELQRLQATLNVLRDGAADKVKTALLADAREEAR----RTFDGERQRLQQEILELKAA 161
Cdd:TIGR02169 769 ELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLtlekEYLEKEIQELQEQRIDLKEQ 848
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 162 RKQAEEALSNcMQADKAKAADLRAAYQAHQDEVHRIKRECERDIRRLMDEIKGKERVILALEKELGVQAGQTQRLLLQKE 241
Cdd:TIGR02169 849 IKSIEKEIEN-LNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLE 927
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 242 ALDEQLVQVKEAERHHSSPKRELPpgigdmaelmggqdqhmderDVRRFQLKIAELNSVIRKLEDRNTLLADERNELLKR 321
Cdd:TIGR02169 928 ALEEELSEIEDPKGEDEEIPEEEL--------------------SLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKR 987
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1046858756 322 sretevqLKPLVEKNKRMNKKNEDLLHSIQRMEEKLKSLTRE 363
Cdd:TIGR02169 988 -------LDELKEKRAKLEEERKAILERIEEYEKKKREVFME 1022
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
174-767 |
4.78e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.79 E-value: 4.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 174 QADKA-KAADLRAAYQAHQDEVHRIK-RECERDIRRLMDEIKGKERVILALEKELGVQAGQTQRLLLQKEALDEQLVQVK 251
Cdd:COG1196 208 QAEKAeRYRELKEELKELEAELLLLKlRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 252 EAERHHSSPKRELppgigdmaelmgGQDQHMDERDVRRFQLKIAELNSVIRKLEDRNTLLADERNELLKRSRETEVQLKp 331
Cdd:COG1196 288 AEEYELLAELARL------------EQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELE- 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 332 lvEKNKRMNKKNEDLLHSIQRMEEKLKSLTRENVEMKEKLSAQASLKRHTSLNDLSLTRDEQEIEFLRLQVLEQQHVIDD 411
Cdd:COG1196 355 --EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 412 LSLERERLLRSKRHRGKslkppkkhvvetffgfDEESVDSETLSETSYNTDRTDRTPATPEEDLDETTTREEADLRfcql 491
Cdd:COG1196 433 LEEEEEEEEEALEEAAE----------------EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR---- 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 492 treYQALQRAYALLQEQVGGTLDAEREARTRE------QLQADLLRCQAKIEDLEKLLVEKGQDAAWVEEKQVLMRTNQD 565
Cdd:COG1196 493 ---LLLLLEAEADYEGFLEGVKAALLLAGLRGlagavaVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAA 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 566 LLEKIYRLEMEENQLKSEMQDAKDQNELLEFRVLELEERERRSPAFNLQITTFPENNSSALQLfchQEGVKWLKQIEGTE 645
Cdd:COG1196 570 KAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARL---EAALRRAVTLAGRL 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 646 AALTQKMMDLEKEKDQFSRQKGYLEQELDYRKEALDQAYlvgpEKIQDLEATLYNALQQEPGRRASESLSASQREDLQAA 725
Cdd:COG1196 647 REVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELA----ERLAEEELELEEALLAEEEEERELAEAEEERLEEELE 722
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 1046858756 726 VEKVRRQLLRQSREFDSQILRERMEL-------------LQQAQQKIREMEGKLE 767
Cdd:COG1196 723 EEALEEQLEAEREELLEELLEEEELLeeealeelpeppdLEELERELERLEREIE 777
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
38-246 |
6.11e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.14 E-value: 6.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 38 QQEKSKVGKLRERLQEAKLEREQEQRRHTAYISELKAKLHEEKTKELQALREALIRQHEQEAARTAKIKEGELQRLQATL 117
Cdd:PTZ00121 1571 KAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAE 1650
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 118 NVLRDGAADKVKTALLADAREEARRTFDGERQRLQQEILELKAARKQAEEA-----LSNCMQADKAKAADLRAAYQAHQD 192
Cdd:PTZ00121 1651 ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAkkaeeLKKKEAEEKKKAEELKKAEEENKI 1730
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1046858756 193 EVHRIKRECERDIRRL----MDEIKGKERVILALEKELGVQAGQTQRLLLQKEALDEQ 246
Cdd:PTZ00121 1731 KAEEAKKEAEEDKKKAeeakKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEE 1788
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
13-246 |
1.54e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 1.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 13 ETETDSVQMANEELRAKLTNIQIEFQQEKSKVGKLRERLQEAKLEREQEQRRHTAYISEL-----KAKLHEEKTKELQAL 87
Cdd:TIGR02168 711 EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLeeaeeELAEAEAEIEELEAQ 790
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 88 REALIRQHEQEaARTAKIKEGELQRLQATLNVLRDGAADKVKTAllADAREEARRTfDGERQRLQQEILELKAARKQAEE 167
Cdd:TIGR02168 791 IEQLKEELKAL-REALDELRAELTLLNEEAANLRERLESLERRI--AATERRLEDL-EEQIEELSEDIESLAAEIEELEE 866
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 168 ALSNcMQADKAKAADLRAAYQAHQDEVHRIKRECERDIRRLMDEIKGKERVILALEKELG----VQAGQTQRLLLQKEAL 243
Cdd:TIGR02168 867 LIEE-LESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAqlelRLEGLEVRIDNLQERL 945
|
...
gi 1046858756 244 DEQ 246
Cdd:TIGR02168 946 SEE 948
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
22-255 |
1.92e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 1.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 22 ANEELRAKLTNIQIEFQQEKSKVGKLRERLQEAKLEREQEQRRhtayISELKAKLHEekTKELQALREALIRQHEQEAAR 101
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERR----IAALARRIRA--LEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 102 TAKIKEGELQRLQATLNVL-RDGAADKVKTALLADAREEARRtfdgeRQRLQQEILElkAARKQAEEalsncMQADKAKA 180
Cdd:COG4942 95 LRAELEAQKEELAELLRALyRLGRQPPLALLLSPEDFLDAVR-----RLQYLKYLAP--ARREQAEE-----LRADLAEL 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1046858756 181 ADLRAAYQAHQDEVHRIKRECERDIRRLMDEIKGKERVILALEKELGVQAGQTQRLLLQKEALDEQLVQVKEAER 255
Cdd:COG4942 163 AALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
42-779 |
6.42e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.89 E-value: 6.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 42 SKVGKLRERLQEAKLEREQEQRRHTAYISELKAKLHEEKTKELQALREALIRQHEQEAARTAKIKEgELQRLQATLNVLR 121
Cdd:pfam02463 165 SRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLD-YLKLNEERIDLLQ 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 122 DGAADKVKTALLADAREEARRtfdgERQRLQQEILELKAARKQAEEALSNCMQADKAKAADLRAAYQAHQDEVHRIKREC 201
Cdd:pfam02463 244 ELLRDEQEEIESSKQEIEKEE----EKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKES 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 202 ERDIRRLMDEIKGKERVILALEKELGVQAGQTQRLLLQKEALDEQLVQVKEAERHHSSPKRELPPGIGDMAELMgGQDQH 281
Cdd:pfam02463 320 EKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLK-EEELE 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 282 MDERDVRRFQLKIAELNSVIRKLEDRNTLLADERNELLKRS----------RETEVQLKPLVEKNKRMNKKNEDLLHSIQ 351
Cdd:pfam02463 399 LKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIelkqgklteeKEELEKQELKLLKDELELKKSEDLLKETQ 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 352 RMEEKLKSLTRENVEMKEKLSAQASLKRHTSLNDLSLTRDEQEIEFLRLQVL--EQQHVIDDLSLERERLLRSKRHRGKS 429
Cdd:pfam02463 479 LVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRlgDLGVAVENYKVAISTAVIVEVSATAD 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 430 LKPPKKHVVETFFGFDEESVDSETLSETSYNTDRTDRTP---ATPEEDLDETTTREEADLRFCQLTREYQALQRAYALLQ 506
Cdd:pfam02463 559 EVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLeidPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLK 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 507 EQVGGTLDAEREARTREQLQADLLRCQAKIEDLEK---LLVEKGQDAAWVEEKQVLMRTNQDLLEKIYRLEMEENQLKSE 583
Cdd:pfam02463 639 ESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKellEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLE 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 584 MQDAKDQNELLEFRVLELEERERRSPAFNLQITTFPENNSSALQLFCHQEGVKWLKQIEGTEAALTQKMMDLEKEKD--- 660
Cdd:pfam02463 719 AEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKlka 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 661 -QFSRQKGYLEQELDYRKEALDQAYLVGPEKIQDLEATLYNALQQEPGRRASESLSASQREDLQAAVEKVRRQLLRQSRE 739
Cdd:pfam02463 799 qEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEE 878
|
730 740 750 760
....*....|....*....|....*....|....*....|
gi 1046858756 740 FDSQILRERMELLQQAQQKIREMEGKLELQRRQLKELEEK 779
Cdd:pfam02463 879 LEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENE 918
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
27-213 |
1.34e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 1.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 27 RAKLTNIQIEFQQEKSKVGKLRERLQEAKLEREQEQRRHTAYISELKAKLHEEKTKELQALREALIRQHEQEAARTAKIK 106
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDDLA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 107 --EGELQRLQATLNVLRDGAAD-KVKTALLADAREEARRTFDGERQRLQQ-EILELKAARKQAEEALSNcmQADKAKAAD 182
Cdd:COG4913 689 alEEQLEELEAELEELEEELDElKGEIGRLEKELEQAEEELDELQDRLEAaEDLARLELRALLEERFAA--ALGDAVERE 766
|
170 180 190
....*....|....*....|....*....|.
gi 1046858756 183 LRAAYQAHQDEVHRIKRECERDIRRLMDEIK 213
Cdd:COG4913 767 LRENLEERIDALRARLNRAEEELERAMRAFN 797
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
297-428 |
4.08e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 44.08 E-value: 4.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 297 LNSVIRKLEDRntLLADERNELLKRSRETEVQLKPLVEKNKRMNKKNEDLLHSIQRMEEKLKSLTRENVEMKEKLSAQAS 376
Cdd:COG2433 378 IEEALEELIEK--ELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARS 455
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1046858756 377 LKRHTSLNDLSLTRDEQEIEFLRLQVLEQQHVIDDLSLERERL--LRSKRHRGK 428
Cdd:COG2433 456 EERREIRKDREISRLDREIERLERELEEERERIEELKRKLERLkeLWKLEHSGE 509
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
23-246 |
4.09e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 4.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 23 NEELRAKLTNIQIEFQQEKskVGKLRERLQEAKLEREQEQRRHTAYISELKAKLHEEKTKELQALREALIRQHEQEAART 102
Cdd:COG3206 165 NLELRREEARKALEFLEEQ--LPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 103 AKIKEGELQRLQATLNVLRDGAADKVKTALLADAREEARrtfdgERQRLQQEILELKAARKQAEEALSNCMQADKAKAAD 182
Cdd:COG3206 243 AALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAE-----LSARYTPNHPDVIALRAQIAALRAQLQQEAQRILAS 317
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1046858756 183 LRAAYQAHQDEVHRIKREcERDIRRLMDEIKGKERVILALEKELGVQAGQTQRLLLQKEALDEQ 246
Cdd:COG3206 318 LEAELEALQAREASLQAQ-LAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLA 380
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
22-169 |
4.96e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 4.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 22 ANEELRAKLT--NIQIEFQQEKSKVGKLRE---RLQEAKLEREQEQRRHTAYISELKAKLHEEKTKELQALrEALIRQHE 96
Cdd:COG4913 273 ELEYLRAALRlwFAQRRLELLEAELEELRAelaRLEAELERLEARLDALREELDELEAQIRGNGGDRLEQL-EREIERLE 351
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1046858756 97 QEAARtakiKEGELQRLQATLNVLrdGAADKVKTALLADAREEARR---TFDGERQRLQQEILELKAARKQAEEAL 169
Cdd:COG4913 352 RELEE----RERRRARLEALLAAL--GLPLPASAEEFAALRAEAAAlleALEEELEALEEALAEAEAALRDLRREL 421
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
548-743 |
6.79e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 6.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 548 QDAAWVEEKQVLMRTNQDLLEkiyRLEMEENQLKSEMQDAKDQNELLEfrvLELEERERRSPAFN-LQITTFPENNSSAL 626
Cdd:COG4913 593 DDRRRIRSRYVLGFDNRAKLA---ALEAELAELEEELAEAEERLEALE---AELDALQERREALQrLAEYSWDEIDVASA 666
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 627 QLFCHQ---------EGVKWLKQIEGTEAALTQKMMDLEKEKDQFSRQKGYLEQELDYRKEALDQAY--------LVGPE 689
Cdd:COG4913 667 EREIAEleaelerldASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQdrleaaedLARLE 746
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1046858756 690 KIQDLEATLYNALQQEPGRRASESLSaSQREDLQAAVEKVRRQLLRQSREFDSQ 743
Cdd:COG4913 747 LRALLEERFAAALGDAVERELRENLE-ERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
178-369 |
1.78e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.77 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 178 AKAADLRAaYQAHQDEVHRIKRECERDIRRlmDEIKgkervilalekeLGVQAGQTQRLLLQKEALDEQLVQVKEAERHH 257
Cdd:COG2433 337 ALAAALKA-YDAYKNKFERVEKKVPPDVDR--DEVK------------ARVIRGLSIEEALEELIEKELPEEEPEAEREK 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 258 SSPKRELPPGIGDMAELMGGQDQHMDErdVRRFQLKIAELNSVIRKLEDRNTLLADERNELLKRSRETevqlkplveknK 337
Cdd:COG2433 402 EHEERELTEEEEEIRRLEEQVERLEAE--VEELEAELEEKDERIERLERELSEARSEERREIRKDREI-----------S 468
|
170 180 190
....*....|....*....|....*....|..
gi 1046858756 338 RMNKKNEDLLHSIQRMEEKLKSLTRENVEMKE 369
Cdd:COG2433 469 RLDREIERLERELEEERERIEELKRKLERLKE 500
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
82-255 |
6.18e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 6.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 82 KELQALREALIRQHEQ-----------EAARTAKIKEGELQRLQATLNVLRDGAadkvKTALLADAREEARRtfdgERQR 150
Cdd:COG4913 235 DDLERAHEALEDAREQiellepirelaERYAAARERLAELEYLRAALRLWFAQR----RLELLEAELEELRA----ELAR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 151 LQQEILELKAARKQAEEalsncmqadkakaaDLRAAYQAHQDEVHRIKRECERDIRRLMDEIKGKERVILALE---KELG 227
Cdd:COG4913 307 LEAELERLEARLDALRE--------------ELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEallAALG 372
|
170 180
....*....|....*....|....*....
gi 1046858756 228 VQAGQTQR-LLLQKEALDEQLVQVKEAER 255
Cdd:COG4913 373 LPLPASAEeFAALRAEAAALLEALEEELE 401
|
|
| PRK05035 |
PRK05035 |
electron transport complex protein RnfC; Provisional |
34-253 |
7.74e-03 |
|
electron transport complex protein RnfC; Provisional
Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 39.93 E-value: 7.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 34 QIEFQQEKSKVGKLRERLQEAKLEREQEQRrhtayisELKAKLHEEKTKE--LQALREALIRQHEQEAARTAK------- 104
Cdd:PRK05035 440 AIEQEKKKAEEAKARFEARQARLEREKAAR-------EARHKKAAEARAAkdKDAVAAALARVKAKKAAATQPivikaga 512
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 105 -------IKEGELQRLQATLNVLRDGAAD----------------KVKTALLADAREEARRTFDGERQRLQQEILELKaA 161
Cdd:PRK05035 513 rpdnsavIAAREARKAQARARQAEKQAAAaadpkkaavaaaiaraKAKKAAQQAANAEAEEEVDPKKAAVAAAIARAK-A 591
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046858756 162 RKQAEEALSNCMQADKAKAADLRAAYQAHQDEVHRIKRECERDIRRLMDEIKGKERVILALEKELGVQAGQTQRLLLQKE 241
Cdd:PRK05035 592 KKAAQQAASAEPEEQVAEVDPKKAAVAAAIARAKAKKAEQQANAEPEEPVDPRKAAVAAAIARAKARKAAQQQANAEPEE 671
|
250
....*....|..
gi 1046858756 242 ALDEQLVQVKEA 253
Cdd:PRK05035 672 AEDPKKAAVAAA 683
|
|
| |
