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Conserved domains on  [gi|1046887675|ref|XP_017448694|]
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protein-arginine deiminase type-4 isoform X1 [Rattus norvegicus]

Protein Classification

protein-arginine deiminase domain-containing protein( domain architecture ID 10136020)

protein-arginine deiminase (PAD) domain-containing protein may catalyze the conversion of protein-bound arginine residues to citrulline residues in a calcium ion-dependent manner

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PAD pfam03068
Protein-arginine deiminase (PAD); Members of this family are found in mammals. In the presence ...
310-691 0e+00

Protein-arginine deiminase (PAD); Members of this family are found in mammals. In the presence of calcium ions, PAD enzymes EC:3.5.3.15 catalyze the post-translational modification reaction responsible for the formation of citrulline residues: Protein L-arginine + H2O <=> Protein L-citrulline + NH3. Several types are recognized (and included in the family) on the basis of molecular mass, substrate specificity, and tissue localization. The expression of type I PAD is known to be under the control of oestrogen.


:

Pssm-ID: 460794  Cd Length: 393  Bit Score: 662.00  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046887675 310 LVFQDTVMFRVAPWIMTPNTQPPQEVYVCRFSDN--EDFLKSLATFTKKAKCKLTVCPEEENQDDQWMQDEMEIGYIQAP 387
Cdd:pfam03068   1 PIFSDTVVFRVAPWIMTPNTQPPEEVYVCRGKENsqQGFVKELTDLVKKAGIQLPVCPFNENRGDRWMQDEMEFGYTQAP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046887675 388 HKTLPVVFDSPRDRGLKDFPVKRVMGPNFGYVTRGLYRAEVTGLDAFGNLEVSPPVTVRGKEYPLGRILIGSSGYSSSES 467
Cdd:pfam03068  81 GKGLPVVLDSPRGRGLEDFPFKQLLGPDFGYVTRETDGFGVSELDSFGNLEVSPPVTVGGKEYPLGRILIGSSSYPSEGG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046887675 468 RDMHQILQDFLGAQQVQAPVRLFSDWLFVGHVDEFLSFVPARGKqQGFRLLLSSPRACYQMFQELQTEGHGEASLFEGL- 546
Cdd:pfam03068 161 RRMTKVLRDFLAAQQVQPPVELFSDWLTVGHVDEFVQFVPADNK-KGFRLLLASPRACYKLLEKLQEEGHGEALLFSGNg 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046887675 547 -------KRKRQTISDILSSQKLRDQNAYVESCIDWNREVLKRELGLTEGDIIDIPQLFRIV--GNSRGNPKAEAFFPNM 617
Cdd:pfam03068 240 dtlhangREANTTINELLADESLIQQNLYVQKCIDWNRDILKRELGLTEDDIIDIPALFKLEltNGPCKLLRAEAFFPNM 319
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1046887675 618 VNMLVLGKHLGIPKPFGPIINGRCCLEEKVCSLLEPLGLHCTFINDFYSYHMYHGEVHCGTNVRRKPFAFKWWH 691
Cdd:pfam03068 320 VNMVVLGKYLGIPKPFGPIINGRCCLEEAVRSLLEPLGLNCTFIDDFYSYHVLGGEVHCGTNTRRKPFAFKWWE 393
PAD_M pfam08527
Protein-arginine deiminase (PAD) middle domain; This family represents the central ...
140-300 3.72e-86

Protein-arginine deiminase (PAD) middle domain; This family represents the central non-catalytic domain of protein-arginine deiminase. This domain has an immunoglobulin-like fold.


:

Pssm-ID: 462510  Cd Length: 159  Bit Score: 267.44  E-value: 3.72e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046887675 140 VELSLSADVTRTGKAKPApaGKDQSTWTWGPDGHGAILLVNCDKEDPKSSGMDFEDDKVLDNKDLQDMSPMTLSTKTPKD 219
Cdd:pfam08527   1 VEISLDVDADRDGVVEKN--NPDKGSWTWGPNGQGAILLVNCDRDNPGSQKPDCEDSKVFSLEDLKDMSLMVLRTQGPSK 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046887675 220 FFDKYQLVLQVPKAKMNKVRVFRATRGKLPSRYKVVLGPQQFSHRLELLGGQHSTDFYVEGLAFPDADFKGLIPLTISLL 299
Cdd:pfam08527  79 LFDGYKLVLHVSKSDADKVRVFHAQGGDSGSRYKLVLGPGKLSYVVEYLGGQAEITFYVEGLAFPDADFSGLVSISVSLL 158

                  .
gi 1046887675 300 D 300
Cdd:pfam08527 159 E 159
PAD_N cd04214
N-terminal non-catalytic domain of protein-arginine deiminase; The N-terminal non-catalytic ...
38-139 1.22e-34

N-terminal non-catalytic domain of protein-arginine deiminase; The N-terminal non-catalytic domain of protein-arginine deiminase has a cupredoxin-like fold, but lacks the Cu binding site. PAD (protein-arginine deiminase) and protein L-arginine iminohydrolase catalyze the conversion of protein arginine residues to citrulline residues post-translationally in a process called citrullination. The modification plays crucial regulatory roles in development and cell differentiation.


:

Pssm-ID: 259876  Cd Length: 108  Bit Score: 127.11  E-value: 1.22e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046887675  38 QFPGRLRLPPLCQ---GPHLGYSSSAPRGSTSFSITASPEVVVDVIHGPPSKKSTTGASKWPLDPKLEVTLQMKAASSRI 114
Cdd:cd04214     2 RLDTGSRTHAVCVlgtETTLDIYGSAPAGATSFSVKASPGVVVDVAHSPPAKKEPTGLWPWPLDTDVEVTMTMKAASKEV 81
                          90       100
                  ....*....|....*....|....*..
gi 1046887675 115 DDQKVRISYYGPKTSST--QALLYLTG 139
Cdd:cd04214    82 NDSKVRVSYYGPKEDAPlgKAVLYLTG 108
 
Name Accession Description Interval E-value
PAD pfam03068
Protein-arginine deiminase (PAD); Members of this family are found in mammals. In the presence ...
310-691 0e+00

Protein-arginine deiminase (PAD); Members of this family are found in mammals. In the presence of calcium ions, PAD enzymes EC:3.5.3.15 catalyze the post-translational modification reaction responsible for the formation of citrulline residues: Protein L-arginine + H2O <=> Protein L-citrulline + NH3. Several types are recognized (and included in the family) on the basis of molecular mass, substrate specificity, and tissue localization. The expression of type I PAD is known to be under the control of oestrogen.


Pssm-ID: 460794  Cd Length: 393  Bit Score: 662.00  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046887675 310 LVFQDTVMFRVAPWIMTPNTQPPQEVYVCRFSDN--EDFLKSLATFTKKAKCKLTVCPEEENQDDQWMQDEMEIGYIQAP 387
Cdd:pfam03068   1 PIFSDTVVFRVAPWIMTPNTQPPEEVYVCRGKENsqQGFVKELTDLVKKAGIQLPVCPFNENRGDRWMQDEMEFGYTQAP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046887675 388 HKTLPVVFDSPRDRGLKDFPVKRVMGPNFGYVTRGLYRAEVTGLDAFGNLEVSPPVTVRGKEYPLGRILIGSSGYSSSES 467
Cdd:pfam03068  81 GKGLPVVLDSPRGRGLEDFPFKQLLGPDFGYVTRETDGFGVSELDSFGNLEVSPPVTVGGKEYPLGRILIGSSSYPSEGG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046887675 468 RDMHQILQDFLGAQQVQAPVRLFSDWLFVGHVDEFLSFVPARGKqQGFRLLLSSPRACYQMFQELQTEGHGEASLFEGL- 546
Cdd:pfam03068 161 RRMTKVLRDFLAAQQVQPPVELFSDWLTVGHVDEFVQFVPADNK-KGFRLLLASPRACYKLLEKLQEEGHGEALLFSGNg 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046887675 547 -------KRKRQTISDILSSQKLRDQNAYVESCIDWNREVLKRELGLTEGDIIDIPQLFRIV--GNSRGNPKAEAFFPNM 617
Cdd:pfam03068 240 dtlhangREANTTINELLADESLIQQNLYVQKCIDWNRDILKRELGLTEDDIIDIPALFKLEltNGPCKLLRAEAFFPNM 319
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1046887675 618 VNMLVLGKHLGIPKPFGPIINGRCCLEEKVCSLLEPLGLHCTFINDFYSYHMYHGEVHCGTNVRRKPFAFKWWH 691
Cdd:pfam03068 320 VNMVVLGKYLGIPKPFGPIINGRCCLEEAVRSLLEPLGLNCTFIDDFYSYHVLGGEVHCGTNTRRKPFAFKWWE 393
PAD_M pfam08527
Protein-arginine deiminase (PAD) middle domain; This family represents the central ...
140-300 3.72e-86

Protein-arginine deiminase (PAD) middle domain; This family represents the central non-catalytic domain of protein-arginine deiminase. This domain has an immunoglobulin-like fold.


Pssm-ID: 462510  Cd Length: 159  Bit Score: 267.44  E-value: 3.72e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046887675 140 VELSLSADVTRTGKAKPApaGKDQSTWTWGPDGHGAILLVNCDKEDPKSSGMDFEDDKVLDNKDLQDMSPMTLSTKTPKD 219
Cdd:pfam08527   1 VEISLDVDADRDGVVEKN--NPDKGSWTWGPNGQGAILLVNCDRDNPGSQKPDCEDSKVFSLEDLKDMSLMVLRTQGPSK 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046887675 220 FFDKYQLVLQVPKAKMNKVRVFRATRGKLPSRYKVVLGPQQFSHRLELLGGQHSTDFYVEGLAFPDADFKGLIPLTISLL 299
Cdd:pfam08527  79 LFDGYKLVLHVSKSDADKVRVFHAQGGDSGSRYKLVLGPGKLSYVVEYLGGQAEITFYVEGLAFPDADFSGLVSISVSLL 158

                  .
gi 1046887675 300 D 300
Cdd:pfam08527 159 E 159
PAD_N cd04214
N-terminal non-catalytic domain of protein-arginine deiminase; The N-terminal non-catalytic ...
38-139 1.22e-34

N-terminal non-catalytic domain of protein-arginine deiminase; The N-terminal non-catalytic domain of protein-arginine deiminase has a cupredoxin-like fold, but lacks the Cu binding site. PAD (protein-arginine deiminase) and protein L-arginine iminohydrolase catalyze the conversion of protein arginine residues to citrulline residues post-translationally in a process called citrullination. The modification plays crucial regulatory roles in development and cell differentiation.


Pssm-ID: 259876  Cd Length: 108  Bit Score: 127.11  E-value: 1.22e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046887675  38 QFPGRLRLPPLCQ---GPHLGYSSSAPRGSTSFSITASPEVVVDVIHGPPSKKSTTGASKWPLDPKLEVTLQMKAASSRI 114
Cdd:cd04214     2 RLDTGSRTHAVCVlgtETTLDIYGSAPAGATSFSVKASPGVVVDVAHSPPAKKEPTGLWPWPLDTDVEVTMTMKAASKEV 81
                          90       100
                  ....*....|....*....|....*..
gi 1046887675 115 DDQKVRISYYGPKTSST--QALLYLTG 139
Cdd:cd04214    82 NDSKVRVSYYGPKEDAPlgKAVLYLTG 108
PAD_N pfam08526
Protein-arginine deiminase (PAD) N-terminal domain; This family represents the N-terminal ...
57-138 8.60e-34

Protein-arginine deiminase (PAD) N-terminal domain; This family represents the N-terminal non-catalytic domain of protein-arginine deiminase. This domain has a cupredoxin-like fold.


Pssm-ID: 462509  Cd Length: 113  Bit Score: 124.98  E-value: 8.60e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046887675  57 SSSAPRGSTSFSITASPEVVVDVIHGPPSKKSTTGASKWPLDPKLEVTLQMKAASSRIDDQKVRISYYGPKTSST--QAL 134
Cdd:pfam08526  30 YRSAPKGCKSFSVKGSPGVLVDIAPSVPRTTEPSGTSRWPLDPNTDVLVSMDSASSEVNDDKVSVSYYGPDEEAPlgTAV 109

                  ....
gi 1046887675 135 LYLT 138
Cdd:pfam08526 110 LYLT 113
 
Name Accession Description Interval E-value
PAD pfam03068
Protein-arginine deiminase (PAD); Members of this family are found in mammals. In the presence ...
310-691 0e+00

Protein-arginine deiminase (PAD); Members of this family are found in mammals. In the presence of calcium ions, PAD enzymes EC:3.5.3.15 catalyze the post-translational modification reaction responsible for the formation of citrulline residues: Protein L-arginine + H2O <=> Protein L-citrulline + NH3. Several types are recognized (and included in the family) on the basis of molecular mass, substrate specificity, and tissue localization. The expression of type I PAD is known to be under the control of oestrogen.


Pssm-ID: 460794  Cd Length: 393  Bit Score: 662.00  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046887675 310 LVFQDTVMFRVAPWIMTPNTQPPQEVYVCRFSDN--EDFLKSLATFTKKAKCKLTVCPEEENQDDQWMQDEMEIGYIQAP 387
Cdd:pfam03068   1 PIFSDTVVFRVAPWIMTPNTQPPEEVYVCRGKENsqQGFVKELTDLVKKAGIQLPVCPFNENRGDRWMQDEMEFGYTQAP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046887675 388 HKTLPVVFDSPRDRGLKDFPVKRVMGPNFGYVTRGLYRAEVTGLDAFGNLEVSPPVTVRGKEYPLGRILIGSSGYSSSES 467
Cdd:pfam03068  81 GKGLPVVLDSPRGRGLEDFPFKQLLGPDFGYVTRETDGFGVSELDSFGNLEVSPPVTVGGKEYPLGRILIGSSSYPSEGG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046887675 468 RDMHQILQDFLGAQQVQAPVRLFSDWLFVGHVDEFLSFVPARGKqQGFRLLLSSPRACYQMFQELQTEGHGEASLFEGL- 546
Cdd:pfam03068 161 RRMTKVLRDFLAAQQVQPPVELFSDWLTVGHVDEFVQFVPADNK-KGFRLLLASPRACYKLLEKLQEEGHGEALLFSGNg 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046887675 547 -------KRKRQTISDILSSQKLRDQNAYVESCIDWNREVLKRELGLTEGDIIDIPQLFRIV--GNSRGNPKAEAFFPNM 617
Cdd:pfam03068 240 dtlhangREANTTINELLADESLIQQNLYVQKCIDWNRDILKRELGLTEDDIIDIPALFKLEltNGPCKLLRAEAFFPNM 319
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1046887675 618 VNMLVLGKHLGIPKPFGPIINGRCCLEEKVCSLLEPLGLHCTFINDFYSYHMYHGEVHCGTNVRRKPFAFKWWH 691
Cdd:pfam03068 320 VNMVVLGKYLGIPKPFGPIINGRCCLEEAVRSLLEPLGLNCTFIDDFYSYHVLGGEVHCGTNTRRKPFAFKWWE 393
PAD_M pfam08527
Protein-arginine deiminase (PAD) middle domain; This family represents the central ...
140-300 3.72e-86

Protein-arginine deiminase (PAD) middle domain; This family represents the central non-catalytic domain of protein-arginine deiminase. This domain has an immunoglobulin-like fold.


Pssm-ID: 462510  Cd Length: 159  Bit Score: 267.44  E-value: 3.72e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046887675 140 VELSLSADVTRTGKAKPApaGKDQSTWTWGPDGHGAILLVNCDKEDPKSSGMDFEDDKVLDNKDLQDMSPMTLSTKTPKD 219
Cdd:pfam08527   1 VEISLDVDADRDGVVEKN--NPDKGSWTWGPNGQGAILLVNCDRDNPGSQKPDCEDSKVFSLEDLKDMSLMVLRTQGPSK 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046887675 220 FFDKYQLVLQVPKAKMNKVRVFRATRGKLPSRYKVVLGPQQFSHRLELLGGQHSTDFYVEGLAFPDADFKGLIPLTISLL 299
Cdd:pfam08527  79 LFDGYKLVLHVSKSDADKVRVFHAQGGDSGSRYKLVLGPGKLSYVVEYLGGQAEITFYVEGLAFPDADFSGLVSISVSLL 158

                  .
gi 1046887675 300 D 300
Cdd:pfam08527 159 E 159
PAD_N cd04214
N-terminal non-catalytic domain of protein-arginine deiminase; The N-terminal non-catalytic ...
38-139 1.22e-34

N-terminal non-catalytic domain of protein-arginine deiminase; The N-terminal non-catalytic domain of protein-arginine deiminase has a cupredoxin-like fold, but lacks the Cu binding site. PAD (protein-arginine deiminase) and protein L-arginine iminohydrolase catalyze the conversion of protein arginine residues to citrulline residues post-translationally in a process called citrullination. The modification plays crucial regulatory roles in development and cell differentiation.


Pssm-ID: 259876  Cd Length: 108  Bit Score: 127.11  E-value: 1.22e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046887675  38 QFPGRLRLPPLCQ---GPHLGYSSSAPRGSTSFSITASPEVVVDVIHGPPSKKSTTGASKWPLDPKLEVTLQMKAASSRI 114
Cdd:cd04214     2 RLDTGSRTHAVCVlgtETTLDIYGSAPAGATSFSVKASPGVVVDVAHSPPAKKEPTGLWPWPLDTDVEVTMTMKAASKEV 81
                          90       100
                  ....*....|....*....|....*..
gi 1046887675 115 DDQKVRISYYGPKTSST--QALLYLTG 139
Cdd:cd04214    82 NDSKVRVSYYGPKEDAPlgKAVLYLTG 108
PAD_N pfam08526
Protein-arginine deiminase (PAD) N-terminal domain; This family represents the N-terminal ...
57-138 8.60e-34

Protein-arginine deiminase (PAD) N-terminal domain; This family represents the N-terminal non-catalytic domain of protein-arginine deiminase. This domain has a cupredoxin-like fold.


Pssm-ID: 462509  Cd Length: 113  Bit Score: 124.98  E-value: 8.60e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046887675  57 SSSAPRGSTSFSITASPEVVVDVIHGPPSKKSTTGASKWPLDPKLEVTLQMKAASSRIDDQKVRISYYGPKTSST--QAL 134
Cdd:pfam08526  30 YRSAPKGCKSFSVKGSPGVLVDIAPSVPRTTEPSGTSRWPLDPNTDVLVSMDSASSEVNDDKVSVSYYGPDEEAPlgTAV 109

                  ....
gi 1046887675 135 LYLT 138
Cdd:pfam08526 110 LYLT 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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