|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
351-978 |
1.24e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.32 E-value: 1.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 351 ELQAVQNEKAQLQIHLDHLILEHNQCLQKSQEAekrtvvQKELLE--STIARLQGElKASLQEKKSLLEKNewfQREVNK 428
Cdd:TIGR02168 254 ELEELTAELQELEEKLEELRLEVSELEEEIEEL------QKELYAlaNEISRLEQQ-KQILRERLANLERQ---LEELEA 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 429 TEKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLEHHKAtsDYQGKVEKALEKITDSKNMLAYEKGK 508
Cdd:TIGR02168 324 QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLE--ELEEQLETLRSKVAQLELQIASLNNE 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 509 LQTKVKQLEAQLHTFAETMLQKDHLHKLNKALEVKYTQAnsELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDA 588
Cdd:TIGR02168 402 IERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQA--ELEELEEELEELQEELERLEEALEELREELEEAEQALDA 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 589 ALKESQKLKGDLKALEDRESKKVGNFQ--KQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVqieLGRR---------- 656
Cdd:TIGR02168 480 AERELAQLQARLDSLERLQENLEGFSEgvKALLKNQSGLSGILGVLSELISVDEGYEAAIEAA---LGGRlqavvvenln 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 657 --DSEIAGLKKER----------SLNQQRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQKSLD----------------- 707
Cdd:TIGR02168 557 aaKKAIAFLKQNElgrvtflpldSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvddldnale 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 708 ------------------------ITREDNRKLAMSLEQAlQTNGHLQSKLDHLQEKLESKERERQSLEAFKEQVAEE-S 762
Cdd:TIGR02168 637 lakklrpgyrivtldgdlvrpggvITGGSAKTNSSILERR-REIEELEEKIEELEEKIAELEKALAELRKELEELEEElE 715
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 763 KVEAELHAER--IEALRKQFQTERETAKKASQR-------------EVSELKKALDEANFRSVEVSRANRELRHKATELE 827
Cdd:TIGR02168 716 QLRKELEELSrqISALRKDLARLEAEVEQLEERiaqlskelteleaEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 828 KVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERM-KQIEMELRQMEIIKDQYQKKNYEQ---SLSIQRFVSEMNTLQKEM 903
Cdd:TIGR02168 796 EELKALREALDELRAELTLLNEEAANLRERLESLeRRIAATERRLEDLEEQIEELSEDIeslAAEIEELEELIEELESEL 875
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039730352 904 ELLTKSQYETSARNKQQELRLVAERKMRLELENRCKELEETIRHLKRCKEATENKLKEASVESEQITANLEEAHR 978
Cdd:TIGR02168 876 EALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS 950
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
655-929 |
4.54e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.27 E-value: 4.54e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 655 RRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQHGSeiepLQKSLDITREDNRKLAMSLEQALQTNGHLQSKL 734
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEE----LELELEEAQAEEYELLAELARLEQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 735 DHLQEKLESKERERQSLEAfKEQVAEESKVEAELHAERIEALRKQFQTERETAKKASQREVSELKKALDEANfrsvEVSR 814
Cdd:COG1196 312 RELEERLEELEEELAELEE-ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE----ELAE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 815 ANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQIEMELRQMEIIKDQYQKKNYEQSLSIQRFVS 894
Cdd:COG1196 387 ELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLA 466
|
250 260 270
....*....|....*....|....*....|....*
gi 1039730352 895 EMNTLQKEMELLTKSQYETSARNKQQELRLVAERK 929
Cdd:COG1196 467 ELLEEAALLEAALAELLEELAEAAARLLLLLEAEA 501
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
66-804 |
1.30e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 1.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 66 LQTEKESNPQKTAFLNDQLNIIQGEhskgLKLLQLEVMNLRQQLKVVKEEEDRAQDEMQRLTATLEIATETKKNAAVIEE 145
Cdd:TIGR02168 237 LREELEELQEELKEAEEELEELTAE----LQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLA 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 146 ELKTTKRKMNLKIQELRRQL--AQEKLVR-----ESLETSASSMLLKVQEMGSVVEAERQQVHALQEKCTALhssmkttQ 218
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLdeLAEELAEleeklEELKEELESLEAELEELEAELEELESRLEELEEQLETL-------R 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 219 DLLAQEQRKNEDLGMTISQLKSDLNS----RDNLICKLVEENKATQISLKKEHEENIYLKSEIL-----SLQDVSGKAQV 289
Cdd:TIGR02168 386 SKVAQLELQIASLNNEIERLEARLERledrRERLQQEIEELLKKLEEAELKELQAELEELEEELeelqeELERLEEALEE 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 290 LNDQLSKKCSELTSMLQVVKMENSRIIAEHQAILKVEQKMITETFQEQNLLLDAAHASITGELQAVQNE-----KAQLQI 364
Cdd:TIGR02168 466 LREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGyeaaiEAALGG 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 365 HLDHLILEHNQCLQKSQEAEKrtvvQKELLESTIARLQGELKASLQEKkslleknewfQREVNKTEKEVAKEKCNLEKEL 444
Cdd:TIGR02168 546 RLQAVVVENLNAAKKAIAFLK----QNELGRVTFLPLDSIKGTEIQGN----------DREILKNIEGFLGVAKDLVKFD 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 445 AESKEDIN------VLNQNLQTLMEENKHLTNKMA--SLEHHKATSDY--QGKVEKALEKITDSKNMLAyekgKLQTKVK 514
Cdd:TIGR02168 612 PKLRKALSyllggvLVVDDLDNALELAKKLRPGYRivTLDGDLVRPGGviTGGSAKTNSSILERRREIE----ELEEKIE 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 515 QLEAQLHTfaetmlqkdhLHKLNKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQ 594
Cdd:TIGR02168 688 ELEEKIAE----------LEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 595 KLKGDLKALEDRESKKVGNFQKQLAEAKEDNCKVTIMLENVLAS---HSKMQGALEKVQIELGRRDSEIAGLKKERSLNQ 671
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALreaLDELRAELTLLNEEAANLRERLESLERRIAATE 837
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 672 QRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQKS-----------------LDITREDNRKLAMSLEQALQTNGHLQSKL 734
Cdd:TIGR02168 838 RRLEDLEEQIEELSEDIESLAAEIEELEELIEELeseleallnerasleeaLALLRSELEELSEELRELESKRSELRREL 917
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039730352 735 DHLQEKLESKERERQSLEA----FKEQVAEESKVEAELHAERIEalrkqfqtERETAKKASQREVSELKKALDE 804
Cdd:TIGR02168 918 EELREKLAQLELRLEGLEVridnLQERLSEEYSLTLEEAEALEN--------KIEDDEEEARRRLKRLENKIKE 983
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
404-999 |
1.55e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.26 E-value: 1.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 404 ELKASLQEKKSLLEKNEWFQREVNKTEkevakekcnLEKELAESKEDINVLNQNLQTLmeENKHLTNKMASLEHHKATSD 483
Cdd:COG1196 217 ELKEELKELEAELLLLKLRELEAELEE---------LEAELEELEAELEELEAELAEL--EAELEELRLELEELELELEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 484 YQGKVEKALEKITDSKNMLAYEKGKLQTKVKQLEAQLHTFAETMLQKDHLHKLNKALEVKYTQANSELSASKAYLEQTEA 563
Cdd:COG1196 286 AQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 564 HLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKKVGNFQKQLAEAKEDnckvtimlenvLASHSKMQ 643
Cdd:COG1196 366 ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEEL-----------EEALAELE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 644 GALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQKSLDITREDNRKLAMSLEQA 723
Cdd:COG1196 435 EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAAL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 724 LQTNGHLQSklDHLQEKLESKERERQSLEAFKEQVAEESKVEAELHAERIEALRKQFQTERETAKKASQREVSELKKALD 803
Cdd:COG1196 515 LLAGLRGLA--GAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAAL 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 804 EANFRSVEVSRANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQIEMELRQMEIIKDQYQKKNY 883
Cdd:COG1196 593 ARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLA 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 884 EQSLSIQRFVSEMNTLQKEMELLTKSQYETSARNKQQELRLVAERKMRLELENRCKELEETIRHLKRCKEATENKLKEAS 963
Cdd:COG1196 673 ALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEA 752
|
570 580 590
....*....|....*....|....*....|....*.
gi 1039730352 964 VESEQITANLEEAHRwfkcrfdglQLELTKNRLQRL 999
Cdd:COG1196 753 LEELPEPPDLEELER---------ELERLEREIEAL 779
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
481-829 |
3.88e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.85 E-value: 3.88e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 481 TSDYQGKVEKALEKITDSKNMLayekGKLQTKVKQLEAQLHTFAETMLQKDHLHKLNKAL-EVKYTQANSELSASKAYLE 559
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENI----ERLDLIIDEKRQQLERLRREREKAERYQALLKEKrEYEGYELLKEKEALERQKE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 560 QTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKKVgnfQKQLAEAKEDNCKVTIMLENVLASH 639
Cdd:TIGR02169 241 AIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRV---KEKIGELEAEIASLERSIAEKEREL 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 640 SKMQGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEaqhgSEIEPLQKSLDITREDNRKLAMS 719
Cdd:TIGR02169 318 EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLR----AELEEVDKEFAETRDELKDYREK 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 720 LEQALQTNGHLQSKLDHLQEKLESKERERQSLEAfkeqvaeeskveaelHAERIEALRKQFQTERETAK---KASQREVS 796
Cdd:TIGR02169 394 LEKLKREINELKRELDRLQEELQRLSEELADLNA---------------AIAGIEAKINELEEEKEDKAleiKKQEWKLE 458
|
330 340 350
....*....|....*....|....*....|....*..
gi 1039730352 797 ELKKALDEANFR----SVEVSRANRELRHKATELEKV 829
Cdd:TIGR02169 459 QLAADLSKYEQElydlKEEYDRVEKELSKLQRELAEA 495
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
720-993 |
1.70e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 1.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 720 LEQALQTNGHLQSKLDHLQEKLESKERERQSLEAFKEQVAEESKVEAELHAERIEALRKQF-QTERETAKKasQREVSEL 798
Cdd:TIGR02169 179 LEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKeAIERQLASL--EEELEKL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 799 KKALDEANFRSVEVSR----ANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLSAKANNAQNME-RMKQIEMELRQMEI 873
Cdd:TIGR02169 257 TEEISELEKRLEEIEQlleeLNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEeRLAKLEAEIDKLLA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 874 IKDQYQKKNYEQSLSIQRFVSEMNTLQKEMELLTKSQYETSARNKQQELRLVAERKmrlELENRCKELEETIRHLKRCKE 953
Cdd:TIGR02169 337 EIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE---KLEKLKREINELKRELDRLQE 413
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1039730352 954 ATEnKLKEASVESEQITANLEEAHRWFKCRFDGLQLELTK 993
Cdd:TIGR02169 414 ELQ-RLSEELADLNAAIAGIEAKINELEEEKEDKALEIKK 452
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
82-853 |
2.49e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.14 E-value: 2.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 82 DQLNIIQGEHSKGLKLLQLEVmNLRQQLKVVKEEEDRAQ-----DEMQRLTATLEIATETKKNAAVIEEELKTTKRKMNL 156
Cdd:TIGR02168 189 DRLEDILNELERQLKSLERQA-EKAERYKELKAELRELElallvLRLEELREELEELQEELKEAEEELEELTAELQELEE 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 157 KIQELRRQlaqeklvRESLETSASSMLLKVQEMGSVVEAERQQVHALQEKCTALHSSMKTTQDLLAQEQRKNEDlgmtis 236
Cdd:TIGR02168 268 KLEELRLE-------VSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDE------ 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 237 qLKSDLNSRDNLICKLVEENKATQISLKKEHEENIYLKSEILSLQDVSGKAQVLNDQLSKKCSELTSMLQVVKMENSRIi 316
Cdd:TIGR02168 335 -LAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERL- 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 317 aehqailkveQKMITETFQEQNLLLDAAHasiTGELQAVQNEKAQLQIHLDHLILEHNQCLQKSQEAEKRTVVQKELLES 396
Cdd:TIGR02168 413 ----------EDRRERLQQEIEELLKKLE---EAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDA 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 397 TIARLQgELKASLQEKKSLLEKNEWFQREVNKTEKE---------VAKEKCNLEKELAESKEdiNVLNQNLQTLMEENKH 467
Cdd:TIGR02168 480 AERELA-QLQARLDSLERLQENLEGFSEGVKALLKNqsglsgilgVLSELISVDEGYEAAIE--AALGGRLQAVVVENLN 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 468 LTNK-MASLEHHKA---------TSDYQGKVEKALEKITDSKNMLAYEKgKLQTKVKQLEAQLHTF------AETMLQKD 531
Cdd:TIGR02168 557 AAKKaIAFLKQNELgrvtflpldSIKGTEIQGNDREILKNIEGFLGVAK-DLVKFDPKLRKALSYLlggvlvVDDLDNAL 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 532 HLHKLNKALEVKYTQANSELSASKAYL---EQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRES 608
Cdd:TIGR02168 636 ELAKKLRPGYRIVTLDGDLVRPGGVITggsAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELE 715
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 609 KKvgnfQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARM 688
Cdd:TIGR02168 716 QL----RKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 689 LIVEAQHGSEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQSLEAFKEQVAEESKVEAEL 768
Cdd:TIGR02168 792 EQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEEL 871
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 769 HAERIEAL--RKQFQTERETAKKASQREVSELKKALDeanfrsvEVSRANRELRHKATELEKVVNsNKEKLKNQRAQIKL 846
Cdd:TIGR02168 872 ESELEALLneRASLEEALALLRSELEELSEELRELES-------KRSELRRELEELREKLAQLEL-RLEGLEVRIDNLQE 943
|
....*..
gi 1039730352 847 HLSAKAN 853
Cdd:TIGR02168 944 RLSEEYS 950
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
440-971 |
6.22e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 57.05 E-value: 6.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 440 LEKELAESKEDINVLNQNLQTLME--------ENKHLTNKMASLEHHkaTSDYQGKVEKALEKITDSKNMLAYEKGKLQT 511
Cdd:pfam15921 247 LEALKSESQNKIELLLQQHQDRIEqlisehevEITGLTEKASSARSQ--ANSIQSQLEIIQEQARNQNSMYMRQLSDLES 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 512 KVKQLEAQLHTFAETMlqKDHLHKLNKALEVkytqANSELSASKAYLEQ-------TEAHLKEMKSILGKNEEELAqavk 584
Cdd:pfam15921 325 TVSQLRSELREAKRMY--EDKIEELEKQLVL----ANSELTEARTERDQfsqesgnLDDQLQKLLADLHKREKELS---- 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 585 crdaaLKESQKlkgdlKALEDRESKKVGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLK 664
Cdd:pfam15921 395 -----LEKEQN-----KRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVS 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 665 KERSLNQQRVQKLEAEVDQWQARMLIVEAQH------GSEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQ 738
Cdd:pfam15921 465 SLTAQLESTKEMLRKVVEELTAKKMTLESSErtvsdlTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLR 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 739 EKleskereRQSLEAFKEQVAEESKVeaelhaerIEALRKQFQTERETAKKASQrevselkkaldEANFRSVEVSRANRE 818
Cdd:pfam15921 545 NV-------QTECEALKLQMAEKDKV--------IEILRQQIENMTQLVGQHGR-----------TAGAMQVEKAQLEKE 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 819 LRHKATELEKVvnsnkEKLKNQRAQIKLHLSAKANNAQnMERMKQIEMELRQMEIIKDQYQKKnyEQSLS-IQRFVSEMN 897
Cdd:pfam15921 599 INDRRLELQEF-----KILKDKKDAKIRELEARVSDLE-LEKVKLVNAGSERLRAVKDIKQER--DQLLNeVKTSRNELN 670
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039730352 898 TLQKEMELLTKSqyetsARNKQQELRLVAErKMRLELENRCKELEETIRHLKRCKEATENKLKEASVESEQITA 971
Cdd:pfam15921 671 SLSEDYEVLKRN-----FRNKSEEMETTTN-KLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITA 738
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
341-976 |
7.43e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.61 E-value: 7.43e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 341 LDAAHASITGELQAVQNEKAQLQIHLDHLILEHNQCLQKSQEAEKR---------TVVQKEL--LESTIARLQGELKASL 409
Cdd:TIGR02169 235 LERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKikdlgeeeqLRVKEKIgeLEAEIASLERSIAEKE 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 410 QEKKSLLEKNEWFQREVNKTEKEVAkekcNLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLE-HHKATSDYQGKV 488
Cdd:TIGR02169 315 RELEDAEERLAKLEAEIDKLLAEIE----ELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDkEFAETRDELKDY 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 489 EKALEKITDSKNMLAYEKGKLQTKVKQLEAQLhtfaetmlqkdhlhklnkalevkyTQANSELSASKAYLEQTEAHLKEM 568
Cdd:TIGR02169 391 REKLEKLKREINELKRELDRLQEELQRLSEEL------------------------ADLNAAIAGIEAKINELEEEKEDK 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 569 KSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKKVGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEK 648
Cdd:TIGR02169 447 ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGT 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 649 VQiELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQHG-------SEIEPLQKSLDITRED--------- 712
Cdd:TIGR02169 527 VA-QLGSVGERYATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGratflplNKMRDERRDLSILSEDgvigfavdl 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 713 ---NRKLAMSLEQALQTNG---HLQSKLDHLQE----KLESKERERQSL-------EAFKEQVAEESKVEAELHAERIEA 775
Cdd:TIGR02169 606 vefDPKYEPAFKYVFGDTLvveDIEAARRLMGKyrmvTLEGELFEKSGAmtggsraPRGGILFSRSEPAELQRLRERLEG 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 776 LRKQfqteretaKKASQREVSELKKALDEANFRSVEVSRANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLSAKANNA 855
Cdd:TIGR02169 686 LKRE--------LSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVK 757
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 856 QNMERMKQiEMELRQMEIIKDQYQKKNYEQSLS---IQRFVSEMNTLQKEM----------------ELLTKSQYETSAR 916
Cdd:TIGR02169 758 SELKELEA-RIEELEEDLHKLEEALNDLEARLShsrIPEIQAELSKLEEEVsriearlreieqklnrLTLEKEYLEKEIQ 836
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039730352 917 NKQQELRLVAERKMRL-------------------ELENRCKELEETIRHLKRCKEATENKLKEASVESEQITANLEEA 976
Cdd:TIGR02169 837 ELQEQRIDLKEQIKSIekeienlngkkeeleeeleELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKK 915
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
737-1010 |
1.00e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 1.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 737 LQEKLESKERERQSLEAFKEQVAEESKVEAELHAERIEALRKQFQtERETAKKASQREVSELKKALDEANFRSVEVSRAN 816
Cdd:TIGR02168 198 LERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELE-ELQEELKEAEEELEELTAELQELEEKLEELRLEV 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 817 RELRHKATELEKVVNSNKEKLKNQRAQIKLHlsakannaqnMERMKQIEMELRQMEIIKDQYQKKNYEQSLSIQRFVSEM 896
Cdd:TIGR02168 277 SELEEEIEELQKELYALANEISRLEQQKQIL----------RERLANLERQLEELEAQLEELESKLDELAEELAELEEKL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 897 NTLQKEMELLTKSQYETSARNKQQELRLVAERKMRLELENRCKELEETIrhlkrckEATENKLKEASVESEQITANLEEA 976
Cdd:TIGR02168 347 EELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI-------ASLNNEIERLEARLERLEDRRERL 419
|
250 260 270
....*....|....*....|....*....|....
gi 1039730352 977 HRWFKCRFDGLQLELTKNRLQRLPREDRWLEENQ 1010
Cdd:TIGR02168 420 QQEIEELLKKLEEAELKELQAELEELEEELEELQ 453
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
650-969 |
1.66e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.92 E-value: 1.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 650 QIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQKSLDITREDNRKLAMSLEQALQTNGH 729
Cdd:PTZ00121 1231 KAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKK 1310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 730 LQSKLDHLQEKLESKERERQSLEAFKEqvAEESKVEAELHAERIEALRKQFQTERETaKKASQREVSELKKALDEANFRS 809
Cdd:PTZ00121 1311 AEEAKKADEAKKKAEEAKKKADAAKKK--AEEAKKAAEAAKAEAEAAADEAEAAEEK-AEAAEKKKEEAKKKADAAKKKA 1387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 810 VEVSRANrELRHKATELEK----VVNSNKEKLKNQRAQIKLHLSAKANNAQNM--ERMKQIEMELRQMEIIKDQYQKKNY 883
Cdd:PTZ00121 1388 EEKKKAD-EAKKKAEEDKKkadeLKKAAAAKKKADEAKKKAEEKKKADEAKKKaeEAKKADEAKKKAEEAKKAEEAKKKA 1466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 884 EQSLSIQRFVSEMNTLQKEMELLTKSQyetSARNKQQELRLVAERKMRLELENRCKELE--ETIRHLKRCKEATENKLKE 961
Cdd:PTZ00121 1467 EEAKKADEAKKKAEEAKKADEAKKKAE---EAKKKADEAKKAAEAKKKADEAKKAEEAKkaDEAKKAEEAKKADEAKKAE 1543
|
....*...
gi 1039730352 962 ASVESEQI 969
Cdd:PTZ00121 1544 EKKKADEL 1551
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
632-827 |
2.66e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.92 E-value: 2.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 632 LENVLASHSKMQGALEKVQ-IELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQhgseieplqkslditR 710
Cdd:COG4913 254 LEPIRELAERYAAARERLAeLEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEAR---------------L 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 711 EDNRKLAMSLEQALQTNG-----HLQSKLDHLQEKLESKERERQSLEAFKEQVaeesKVEAELHAERIEALRKQFQTERE 785
Cdd:COG4913 319 DALREELDELEAQIRGNGgdrleQLEREIERLERELEERERRRARLEALLAAL----GLPLPASAEEFAALRAEAAALLE 394
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1039730352 786 TAKkasqREVSELKKALDEAnfrSVEVSRANRELRHKATELE 827
Cdd:COG4913 395 ALE----EELEALEEALAEA---EAALRDLRRELRELEAEIA 429
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
273-828 |
4.47e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 4.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 273 LKSEILSLQDVSGKAQVLNDQLSKKCSELTSMLQVVKMENSRIIAEHQAILKVEQKMITETFQEQNllldaAHASITGEL 352
Cdd:COG1196 237 LEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQ-----DIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 353 QAVQNEKAQLQIHLDHLILEHNQCLQKSQEAEKRTVVQKELLESTIARLQGELKASLQEKKSLLEKNEwfqrevnkTEKE 432
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE--------ELEE 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 433 VAKEKCNLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLEhhKATSDYQGKVEKALEKITDSKNMLAYEKGKLQTK 512
Cdd:COG1196 384 LAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE--EALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 513 VKQLEAQLHTFAETMLQKDHLH-KLNKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAALK 591
Cdd:COG1196 462 LELLAELLEEAALLEAALAELLeELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALE 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 592 ESQKLKGDLKALEDRES-KKVGNFQKQLAEAkedncKVTIMLENVLASHSKMQGALEKVQIELGRRdsEIAGLKKERSLN 670
Cdd:COG1196 542 AALAAALQNIVVEDDEVaAAAIEYLKAAKAG-----RATFLPLDKIRARAALAAALARGAIGAAVD--LVASDLREADAR 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 671 QQRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQS 750
Cdd:COG1196 615 YYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELE 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 751 LEAFKEQVAEESKVEAELHAERI-EALRKQFQTERETAKKASQREVSELKKALDEANFRSVEVSRANRE-LRHKATELEK 828
Cdd:COG1196 695 LEEALLAEEEEERELAEAEEERLeEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEeLERELERLER 774
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
378-968 |
5.71e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.99 E-value: 5.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 378 QKSQEAEKRTVVQK--ELLESTIARLQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKCNLEKELAESKEDINVLN 455
Cdd:PTZ00121 1176 KKAEAARKAEEVRKaeELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIR 1255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 456 QNLQTLMEENKHLTNKMASLEHHKATSDYQGKVEKALEKITDSKNMLAYEKGKLQTKVKQLEAQLHTFAETMLQKdhLHK 535
Cdd:PTZ00121 1256 KFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKK--ADA 1333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 536 LNKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAvkcRDAALKESQKLKGDLKALEDRESKKVGNFQ 615
Cdd:PTZ00121 1334 AKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKA---DAAKKKAEEKKKADEAKKKAEEDKKKADEL 1410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 616 KQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAglKKERSLNQQRVQKLEAEvdqwQARMLIVEAQH 695
Cdd:PTZ00121 1411 KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA--KKAEEAKKKAEEAKKAD----EAKKKAEEAKK 1484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 696 GSEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQSLEAFKEQVAEESKVEAEL------- 768
Cdd:PTZ00121 1485 ADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELkkaeekk 1564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 769 ---HAERIEALRKQFQTERETAKKASQREVSELKKALDEANFRSVEVSRANRELRHKATELEKvvnsnKEKLKNQRAQIk 845
Cdd:PTZ00121 1565 kaeEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKK-----AEEEKKKVEQL- 1638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 846 lhlsaKANNAQNMERMKQIEMELRQMEIIKDQYQKKNYEQSLSIQRFVSEMNTLQKEMELLTKSQYEtsaRNKQQELRLV 925
Cdd:PTZ00121 1639 -----KKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE---AKKAEELKKK 1710
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 1039730352 926 AERKMRLELENRCKELEETIR--HLKRCKEATENKLKEASVESEQ 968
Cdd:PTZ00121 1711 EAEEKKKAEELKKAEEENKIKaeEAKKEAEEDKKKAEEAKKDEEE 1755
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
428-975 |
6.93e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.53 E-value: 6.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 428 KTEKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLEHHK----ATSDYQGKVEKALEKITDSKNMLA 503
Cdd:PRK03918 186 KRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKeeieELEKELESLEGSKRKLEEKIRELE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 504 YEKGKLQTKVKQLEAQLHTFAETMLQKDHLHKLNKALEvKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAV 583
Cdd:PRK03918 266 ERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYE-EYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELK 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 584 KCRDAALKESQKLKGDLKALEDRESKKVGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGL 663
Cdd:PRK03918 345 KKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKEL 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 664 KKE---------------RSLNQQRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQK---SLDITREDNRKLaMSLEQALQ 725
Cdd:PRK03918 425 KKAieelkkakgkcpvcgRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKelrELEKVLKKESEL-IKLKELAE 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 726 TNGHLQSKLD-HLQEKLESKERERQSL-EAFKEQVAEESKVEAELhaERIEALRKQfQTERETAKKASQREVSELKKALD 803
Cdd:PRK03918 504 QLKELEEKLKkYNLEELEKKAEEYEKLkEKLIKLKGEIKSLKKEL--EKLEELKKK-LAELEKKLDELEEELAELLKELE 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 804 EANFRSV-EVSRANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQIEMELRQMEIIKDQYQKKN 882
Cdd:PRK03918 581 ELGFESVeELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEE 660
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 883 YEQ-SLSIQRFVSEMNTLQKEMELLTKSQYETSARNKQQELRLVAERKMRLELEN------RCKELEETIRHLKrcKEAT 955
Cdd:PRK03918 661 YEElREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKlekaleRVEELREKVKKYK--ALLK 738
|
570 580
....*....|....*....|
gi 1039730352 956 ENKLKEASVESEQITANLEE 975
Cdd:PRK03918 739 ERALSKVGEIASEIFEELTE 758
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
428-942 |
1.28e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 52.73 E-value: 1.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 428 KTEKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEEnkhLTNKMASLEHHKATSDYQGKVEKALEKITDSKNMLAYEKG 507
Cdd:PRK02224 199 KEEKDLHERLNGLESELAELDEEIERYEEQREQARET---RDEADEVLEEHEERREELETLEAEIEDLRETIAETERERE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 508 KLQTKVKQLEAQLHTfaetmlqkdhlhklnkaLEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRD 587
Cdd:PRK02224 276 ELAEEVRDLRERLEE-----------------LEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQ 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 588 AALKESQKLKGDLKALEDRESKK---VGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLK 664
Cdd:PRK02224 339 AHNEEAESLREDADDLEERAEELreeAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELR 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 665 KERSLNQQRVQKLEAEVDQwqARMLIVEAQH----------GSEIE--PLQKSLDITREDNRKLAMSLEQALQTNGHLQS 732
Cdd:PRK02224 419 EERDELREREAELEATLRT--ARERVEEAEAlleagkcpecGQPVEgsPHVETIEEDRERVEELEAELEDLEEEVEEVEE 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 733 KLDHLqEKLESKERERQSLEAFKEQVAE---ESKVEAELHAERIEALRKQ-------FQTERETAKKASQR------EVS 796
Cdd:PRK02224 497 RLERA-EDLVEAEDRIERLEERREDLEEliaERRETIEEKRERAEELRERaaeleaeAEEKREAAAEAEEEaeeareEVA 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 797 ELKKALDEANFRsVEVSRANRELRHKATELEKVVNSNKEKLKNQRA---QIKLHLSAKAnnaqnmERMKQIEMELRQMEI 873
Cdd:PRK02224 576 ELNSKLAELKER-IESLERIRTLLAAIADAEDEIERLREKREALAElndERRERLAEKR------ERKRELEAEFDEARI 648
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039730352 874 IKDQYQKKNYEQSLS-----IQRFVSEMNTLQKEMelltksqyeTSARNKQQELRLVAERkmRLELENRCKELE 942
Cdd:PRK02224 649 EEAREDKERAEEYLEqveekLDELREERDDLQAEI---------GAVENELEELEELRER--REALENRVEALE 711
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
365-884 |
2.66e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.60 E-value: 2.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 365 HLDHLILEHNQCLQKSQEAEKRTVVQKELLESTIARLQgELKASLQEKKSLLEKNEWFQREVNKTEKEVA---KEKCNLE 441
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREIN-EISSELPELREELEKLEKEVKELEELKEEIEeleKELESLE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 442 KELAESKEDINVLNQNLQTLMEENKHLTNKMASLEHHKATSDYQGKVEKALEKITDSKNMLAYEKGKLQTKVKQLEAQLH 521
Cdd:PRK03918 252 GSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 522 TFAETMLQKDHLHKLNKALEVKYTQANS---ELSASKAYLEQTEAHLKEMKSI-LGKNEEELAQAVKCRDAALKESQKLK 597
Cdd:PRK03918 332 ELEEKEERLEELKKKLKELEKRLEELEErheLYEEAKAKKEELERLKKRLTGLtPEKLEKELEELEKAKEEIEEEISKIT 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 598 GDLKALEDRESKKVGNFQK-QLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERS------LN 670
Cdd:PRK03918 412 ARIGELKKEIKELKKAIEElKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRelekvlKK 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 671 QQRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQKSLDITREDNRKLA---MSLEQALQTNGHLQSKLDHLQEKLESKERE 747
Cdd:PRK03918 492 ESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKgeiKSLKKELEKLEELKKKLAELEKKLDELEEE 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 748 RQSLEAFKEQVAEESKVEAELHAERIEALRKQFqTERETAKKASQREVSELKKALDEANFRSVEVSRANRELRHKATELE 827
Cdd:PRK03918 572 LAELLKELEELGFESVEELEERLKELEPFYNEY-LELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELE 650
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039730352 828 KV-VNSNKEKLKNQRAQI----KLHLSAKANNAQNMERMKQIEMELRQMEIIKDQYQKKNYE 884
Cdd:PRK03918 651 ELeKKYSEEEYEELREEYlelsRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKE 712
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
300-975 |
2.67e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.51 E-value: 2.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 300 ELTSMLQVVKMENSRIIAEHQAILKVEQKMITETFQEQNLLLDAAHASITGELQAVQNEKAQLQIHLDHL--ILEHNQCL 377
Cdd:TIGR00618 176 DQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLtqKREAQEEQ 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 378 QKSQEAEKRTVVQKELLESTIARLQ----------------GELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKCNLE 441
Cdd:TIGR00618 256 LKKQQLLKQLRARIEELRAQEAVLEetqerinrarkaaplaAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVK 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 442 KELaeSKEDINVLNQNLQTLMEENKHLTNKMASLEHH--KATSDYQG--KVEKALEKITDSKNMLAYEKGKLQTKVKQLE 517
Cdd:TIGR00618 336 QQS--SIEEQRRLLQTLHSQEIHIRDAHEVATSIREIscQQHTLTQHihTLQQQKTTLTQKLQSLCKELDILQREQATID 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 518 AQLHTFAETMLQKDHLHKLNKA-------LEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAAL 590
Cdd:TIGR00618 414 TRTSAFRDLQGQLAHAKKQQELqqryaelCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVL 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 591 KESQKLKGDLKALEDRESKKvgNFQKQLAEAKEDNCKVTIMLENvlaSHSKMQGALEKVQIELGRRDSEIAGLKKERSLN 670
Cdd:TIGR00618 494 ARLLELQEEPCPLCGSCIHP--NPARQDIDNPGPLTRRMQRGEQ---TYAQLETSEEDVYHQLTSERKQRASLKEQMQEI 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 671 QQRVQKLEAEVDQWQARMLIVEaQHGSEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQS 750
Cdd:TIGR00618 569 QQSFSILTQCDNRSKEDIPNLQ-NITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTA 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 751 LEAFKEQVAEEskvEAELHAERIEALRKQFQTERETAKKASQREVSELKKALDeanfrsvevsranrELRHKATELEKVV 830
Cdd:TIGR00618 648 LHALQLTLTQE---RVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKE--------------MLAQCQTLLRELE 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 831 NSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQIEMELrqMEIIKDQYQKKNYEQSLSIQRFVSEMNTLQKEMELLTKSQ 910
Cdd:TIGR00618 711 THIEEYDREFNEIENASSSLGSDLAAREDALNQSLKEL--MHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQ 788
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039730352 911 YETSARNKQQELRLVAERKMRLELENRCKELEETIRHLKRCKEATENKLKEASVESEQITANLEE 975
Cdd:TIGR00618 789 FFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLK 853
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
670-857 |
9.38e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 9.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 670 NQQRVQKLEAEVDQWQARMLIVEAQhGSEIEPLQKSLDITREDNRKLAMSLEQALQTNGhLQSKLDHLQEKLESKERERQ 749
Cdd:COG4913 608 NRAKLAALEAELAELEEELAEAEER-LEALEAELDALQERREALQRLAEYSWDEIDVAS-AEREIAELEAELERLDASSD 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 750 SLEAFKEQVAEESKVEAELHAERIEALRKQFQTEREtaKKASQREVSELKKALDEANFRSVEVSRANRELRHKATELEKV 829
Cdd:COG4913 686 DLAALEEQLEELEAELEELEEELDELKGEIGRLEKE--LEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAV 763
|
170 180
....*....|....*....|....*...
gi 1039730352 830 VNSNKEKLKNQRAQiklhLSAKANNAQN 857
Cdd:COG4913 764 ERELRENLEERIDA----LRARLNRAEE 787
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
335-872 |
3.13e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 3.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 335 QEQNLLLDAAHASITGELQAVQNEKAQLQIHLDHLILEHNQCLQKSQEAEKRtvvQKELLESTIARLQGELKASLQEKKS 414
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGD---RLEQLEREIERLERELEERERRRAR 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 415 LLEKNEWFQREVNKTEKEVAKEKCNLEKELAESKEDINVLNQN-------LQTLMEENKHLTNKMASLEHHKatSDYQGK 487
Cdd:COG4913 364 LEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEAlaeaeaaLRDLRRELRELEAEIASLERRK--SNIPAR 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 488 VEKALEKITDSknmLAYEKGKLQ-----TKVKQLEAQ--------LHTFAETML-QKDHLHKLNKALE------------ 541
Cdd:COG4913 442 LLALRDALAEA---LGLDEAELPfvgelIEVRPEEERwrgaiervLGGFALTLLvPPEHYAAALRWVNrlhlrgrlvyer 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 542 VKYTQANSELSASKA--YLEQTEAHLKEMKSILgknEEELAQ---AVKCRDA-ALKESQ---------KLKGDLKALEDR 606
Cdd:COG4913 519 VRTGLPDPERPRLDPdsLAGKLDFKPHPFRAWL---EAELGRrfdYVCVDSPeELRRHPraitragqvKGNGTRHEKDDR 595
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 607 ES------------KKVGNFQKQLAEAKEDnckvtimlenvLASHSKMQGALEKVQIELGRRDSEIAGLkKERSLNQQRV 674
Cdd:COG4913 596 RRirsryvlgfdnrAKLAALEAELAELEEE-----------LAEAEERLEALEAELDALQERREALQRL-AEYSWDEIDV 663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 675 QKLEAEVDQWQARMLIVEAQHgSEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQSLEAF 754
Cdd:COG4913 664 ASAEREIAELEAELERLDASS-DDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDL 742
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 755 KEQVAE---ESKVEAELHAERIEALRKQFQTERETAKKASQREVSELKKALDEAN----FRSVEVSRANRELRHKATELE 827
Cdd:COG4913 743 ARLELRallEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNrewpAETADLDADLESLPEYLALLD 822
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 1039730352 828 KVVNSN----KEKLKNQRA----QIKLHLSAKANNAQNM--ERMKQIEMELRQME 872
Cdd:COG4913 823 RLEEDGlpeyEERFKELLNensiEFVADLLSKLRRAIREikERIDPLNDSLKRIP 877
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
90-679 |
4.05e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.62 E-value: 4.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 90 EHSKGLKLLQLEVMNLRqqLKVVKEEEDRAQDEMQRLTATLEIATETKKNAAVIEEELKTTKRKMNLKIQELRRQLAQEK 169
Cdd:COG1196 217 ELKEELKELEAELLLLK--LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 170 LVRESLETSASSMLLKVQEMGSVVEAERQQVHALQEKCTALHSSMKTTQDLLAQEQRKNEDLGMTISQLKSDLNSRDNLI 249
Cdd:COG1196 295 AELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 250 cklvEENKATQISLKKEHEENiyLKSEILSLQDVSGKAQVLNDQLskkcSELTSMLQVVKMENSRIIAEHQAILKVEQKM 329
Cdd:COG1196 375 ----AEAEEELEELAEELLEA--LRAAAELAAQLEELEEAEEALL----ERLERLEEELEELEEALAELEEEEEEEEEAL 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 330 ITEtfQEQNLLLDAAHASITGELQAVQNEKAQLQIHLDHLilehnqcLQKSQEAEKRTVVQKELLESTIARLQGELKASL 409
Cdd:COG1196 445 EEA--AEEEAELEEEEEALLELLAELLEEAALLEAALAEL-------LEELAEAAARLLLLLEAEADYEGFLEGVKAALL 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 410 QEKKSLLEknewfQREVNKTEKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEENK-HLTNKMASLEHHKATSDYQGKV 488
Cdd:COG1196 516 LAGLRGLA-----GAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKaAKAGRATFLPLDKIRARAALAA 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 489 EKALEKITDSKNMLAYEKGKLQTKVKQLEAQLHTFAETMLQKDHLHKLNKALEVKYTQANSELSASKAYLEQTEAHLKEM 568
Cdd:COG1196 591 ALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRREL 670
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 569 KSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKKVGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEK 648
Cdd:COG1196 671 LAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEE 750
|
570 580 590
....*....|....*....|....*....|.
gi 1039730352 649 VQIELGRRDSEIAGLKKERSLNQQRVQKLEA 679
Cdd:COG1196 751 EALEELPEPPDLEELERELERLEREIEALGP 781
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
401-596 |
8.27e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 46.43 E-value: 8.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 401 LQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEENKHLTNKmaslehhka 480
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEK--------- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 481 tsdyQGKVEKALEKITDSKNMLAYEKGKLQTKVKQLEAQLHTFAETMLQK----DHLHKLNKALEVKYTQANSELSASKA 556
Cdd:pfam07888 103 ----YKELSASSEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERetelERMKERAKKAGAQRKEEEAERKQLQA 178
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1039730352 557 YLEQTEAHL----KEMKSILGKNEEELAQAVKCRDAALKESQKL 596
Cdd:pfam07888 179 KLQQTEEELrslsKEFQELRNSLAQRDTQVLQLQDTITTLTQKL 222
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
672-977 |
9.79e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 46.76 E-value: 9.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 672 QRVQKLEAEVDQWQARMLIVEAQHgSEIEPLQKSLditREDNRKLAMSLEQALQTNGHLQSKLDHLQEKL-ESKERERQS 750
Cdd:pfam12128 234 AGIMKIRPEFTKLQQEFNTLESAE-LRLSHLHFGY---KSDETLIASRQEERQETSAELNQLLRTLDDQWkEKRDELNGE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 751 LEAFKEQVAEeskveAELHAERIEALRKQFQTERETAKKASQR-------EVSELKKALDEANFRSVEVSRANRELRHKA 823
Cdd:pfam12128 310 LSAADAAVAK-----DRSELEALEDQHGAFLDADIETAAADQEqlpswqsELENLEERLKALTGKHQDVTAKYNRRRSKI 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 824 TE-LEKVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQIEMELRQMEIIKDQYQKKNYEQSLSIQrfvseMNTLQKE 902
Cdd:pfam12128 385 KEqNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLR-----LNQATAT 459
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039730352 903 MELLTksqyetsarnkQQELRLVAERKMRLELENRCKELEETIRHLKRCKEATEN---KLKEASVESEQITANLEEAH 977
Cdd:pfam12128 460 PELLL-----------QLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQaseALRQASRRLEERQSALDELE 526
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
643-906 |
1.24e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.20 E-value: 1.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 643 QGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLiveaQHGSEIEPLQKSLDITREDNRKLAMSLEQ 722
Cdd:TIGR02168 245 QEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELY----ALANEISRLEQQKQILRERLANLERQLEE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 723 ALQTNGHLQSKLDHLQEKLESKERERQSL----EAFKEQVAEESKVEAELHaERIEALRKQFQTERetakkasqREVSEL 798
Cdd:TIGR02168 321 LEAQLEELESKLDELAEELAELEEKLEELkeelESLEAELEELEAELEELE-SRLEELEEQLETLR--------SKVAQL 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 799 KKALDEANfrsVEVSRANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQIEME--LRQMEIIKD 876
Cdd:TIGR02168 392 ELQIASLN---NEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELErlEEALEELRE 468
|
250 260 270
....*....|....*....|....*....|
gi 1039730352 877 QYQKKNYEqslsIQRFVSEMNTLQKEMELL 906
Cdd:TIGR02168 469 ELEEAEQA----LDAAERELAQLQARLDSL 494
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
447-811 |
2.76e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 44.89 E-value: 2.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 447 SKEDINVLNQNLQTLMEENKHLTNKMA---SLEHHKATS---DYQGKVEKALEKITDSKNmlayekgKLQTKVKQLEA-- 518
Cdd:PLN02939 54 IAPKQRSSNSKLQSNTDENGQLENTSLrtvMELPQKSTSsddDHNRASMQRDEAIAAIDN-------EQQTNSKDGEQls 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 519 --QLHTFAEtMLQ--KDHLHKLNKALEVKYTQANSELSASKAYleQTEAHLKEMKsiLGKNEEELAQAVKCR-DAALKES 593
Cdd:PLN02939 127 dfQLEDLVG-MIQnaEKNILLLNQARLQALEDLEKILTEKEAL--QGKINILEMR--LSETDARIKLAAQEKiHVEILEE 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 594 Q--KLKGDLKALEDRESKKVGNFQKQLAEAKEDNckvtIMLENVLAshskmqgALEKVQIELGRRDSEIAGLKKERSLNQ 671
Cdd:PLN02939 202 QleKLRNELLIRGATEGLCVHSLSKELDVLKEEN----MLLKDDIQ-------FLKAELIEVAETEERVFKLEKERSLLD 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 672 QRVQKLE-----AEVDQWQARMLIVEAQHgSEIEPLQKSLDITREDNRKLAMSLEQalqtNGHLQSKLDHLQEKLEsker 746
Cdd:PLN02939 271 ASLRELEskfivAQEDVSKLSPLQYDCWW-EKVENLQDLLDRATNQVEKAALVLDQ----NQDLRDKVDKLEASLK---- 341
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039730352 747 erqsleafKEQVAEESKVEAELHAERIEALRKQFQT---ERETAKKASQREVSE----LKKALDEANFRSVE 811
Cdd:PLN02939 342 --------EANVSKFSSYKVELLQQKLKLLEERLQAsdhEIHSYIQLYQESIKEfqdtLSKLKEESKKRSLE 405
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
132-921 |
2.88e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.13 E-value: 2.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 132 IATETKKNAAVIEEELKTTKRKMNLKIQELRRQLAQEKLVRESLETSASSMLLKVQEMGSVVEAERQQVHALQEKCTALH 211
Cdd:PTZ00121 1088 RADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAE 1167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 212 SSMKTTQDLLAQEQRKNEDLGMTISQLKSDLNSRDNLICKLVEENKATQISlKKEHEENIylkSEILSLQDVSGKAQVln 291
Cdd:PTZ00121 1168 EARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEAR-KAEDAKKA---EAVKKAEEAKKDAEE-- 1241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 292 dqlSKKCSELTSMLQVVKMENSRI--IAEHQAILKVEQKMITETFQEQNLLLDAAHASITGELQAVQ--NEKAQLQIHLD 367
Cdd:PTZ00121 1242 ---AKKAEEERNNEEIRKFEEARMahFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADeaKKKAEEAKKAD 1318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 368 HLILEHNQCLQKSQEAEKRTVVQKELLEstIARLQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKCNLEKELAES 447
Cdd:PTZ00121 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAE--AAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA 1396
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 448 K---EDINVLNQNLQTLMEENKHLTNKMASLEHHKATSDYQGKVEKAleKITDSKNMLAYEKGKLQTKVKQLEA-----Q 519
Cdd:PTZ00121 1397 KkkaEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEA--KKADEAKKKAEEAKKAEEAKKKAEEakkadE 1474
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 520 LHTFAETMLQKDHLHKLNKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEelaqAVKCRDAALKESQKLKGD 599
Cdd:PTZ00121 1475 AKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEE----AKKADEAKKAEEKKKADE 1550
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 600 LKALEDRESKKVGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEa 679
Cdd:PTZ00121 1551 LKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAE- 1629
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 680 EVDQWQARMLIVEAQHGSEIEPLQKSLDITREDNRKLAMS-------LEQALQTNGHLQSKLDHLQEKLEskerERQSLE 752
Cdd:PTZ00121 1630 EEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKaeedkkkAEEAKKAEEDEKKAAEALKKEAE----EAKKAE 1705
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 753 AFKEQVAEESKveaelhaeRIEALRKQFQTERETAKKASQREVSELKKAldeanfrsvEVSRANRELRHKATELEKVVNS 832
Cdd:PTZ00121 1706 ELKKKEAEEKK--------KAEELKKAEEENKIKAEEAKKEAEEDKKKA---------EEAKKDEEEKKKIAHLKKEEEK 1768
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 833 NKEKLKNQRAQIKLHLSAKANNAQNMERMKQIEMELRQMEIIKDQYQKKNYEQSLSIQRFVSEMN--TLQKEMELLTKSQ 910
Cdd:PTZ00121 1769 KAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKevADSKNMQLEEADA 1848
|
810
....*....|.
gi 1039730352 911 YETSARNKQQE 921
Cdd:PTZ00121 1849 FEKHKFNKNNE 1859
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
390-681 |
2.93e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 2.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 390 QKELLESTIARLQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKcnleKELAESKEDINVLNQNLQTLMEENKHLT 469
Cdd:TIGR02169 689 ELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLK----ERLEELEEDLSSLEQEIENVKSELKELE 764
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 470 NKMASLEHHKAtsdyqgKVEKALEKITDSKNMlayekGKLQTKVKQLEAQLHTFAETMLQKDHLHKLNKALEVKYTQANS 549
Cdd:TIGR02169 765 ARIEELEEDLH------KLEEALNDLEARLSH-----SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEK 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 550 ELSASKAYLEQTEAHLKEMKS---ILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKKVGNFQKQLAEAKEDNC 626
Cdd:TIGR02169 834 EIQELQEQRIDLKEQIKSIEKeieNLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIE 913
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1039730352 627 KVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERSLnQQRVQKLEAEV 681
Cdd:TIGR02169 914 KKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDV-QAELQRVEEEI 967
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
52-476 |
3.99e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.72 E-value: 3.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 52 LENLIQSLKMNIFHLQTEKESNpqKTAFLNDQLNIIQGEH-SKGLKLLQLEVMNLRQQLKVVKEEedrAQDEMQRLTATL 130
Cdd:pfam15921 379 LQKLLADLHKREKELSLEKEQN--KRLWDRDTGNSITIDHlRRELDDRNMEVQRLEALLKAMKSE---CQGQMERQMAAI 453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 131 EIATETKKNAAVIEEELKTTKRKMNLKIQELrrqlAQEKLVRESLETSASSMLLKVQEMGSVVEAERQQVHALQEKCTAL 210
Cdd:pfam15921 454 QGKNESLEKVSSLTAQLESTKEMLRKVVEEL----TAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLK 529
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 211 HSSM---KTTQDLLAQEQRKNEDLGMTIS---QLKSDLNSRDNLICKLVEENKATQISLKKEHEEniyLKSEILSLQDVS 284
Cdd:pfam15921 530 LQELqhlKNEGDHLRNVQTECEALKLQMAekdKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQ---LEKEINDRRLEL 606
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 285 GKAQVLNDQLSKKCSELTSMLQVVKMENSRIIAEHQAILKVEQKMITETFQ----------------EQNLLLDAAHASI 348
Cdd:pfam15921 607 QEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQllnevktsrnelnslsEDYEVLKRNFRNK 686
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 349 TGELQAVQNeKAQLQIHLDHLILEHNQCLQKSQEAEKRTVVQKEL-LESTIARLQGELKAsLQEKKSLLEKNewfQREVN 427
Cdd:pfam15921 687 SEEMETTTN-KLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMgMQKQITAKRGQIDA-LQSKIQFLEEA---MTNAN 761
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 1039730352 428 KTEKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLE 476
Cdd:pfam15921 762 KEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANME 810
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
652-961 |
6.17e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.90 E-value: 6.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 652 ELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQHGSeiepLQKSLDITREDNRKLAMSLEQalqtnghLQ 731
Cdd:TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE----IEKEIEQLEQEEEKLKERLEE-------LE 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 732 SKLDHLQEKLESKERERQSLEAFKEQVaEESKVEAELHAERIEA-LRKQFQTERETAKKASQREVSELKKALDEANFRSV 810
Cdd:TIGR02169 744 EDLSSLEQEIENVKSELKELEARIEEL-EEDLHKLEEALNDLEArLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLN 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 811 EVSRANRELRHKATELEKVVNSNKEKLKNQRAQIKLhlsAKANNAQNMERMKQIEMELRQMEiikdqyqkknyeqslsiq 890
Cdd:TIGR02169 823 RLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEN---LNGKKEELEEELEELEAALRDLE------------------ 881
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039730352 891 rfvSEMNTLQKEMELLtKSQYEtSARNKQQELRLVAERKmrlelENRCKELEETIrhlkrckEATENKLKE 961
Cdd:TIGR02169 882 ---SRLGDLKKERDEL-EAQLR-ELERKIEELEAQIEKK-----RKRLSELKAKL-------EALEEELSE 935
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
131-794 |
9.61e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.42 E-value: 9.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 131 EIATETKKNAAVIEEELKTTKRKMNLKIQELRRQLAQEKLVRESLETSASSMLLKVQEMGSVVEAERQQVHALQEKctal 210
Cdd:TIGR00618 180 QLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQ---- 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 211 hssmKTTQDLLAQEQRKNEDLGMTISQLkSDLNSRDNLICK---LVEENKATQISLKKEHEENIYLKSEILSLQDVSGKA 287
Cdd:TIGR00618 256 ----LKKQQLLKQLRARIEELRAQEAVL-EETQERINRARKaapLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKR 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 288 QVLNDQLSKKCSELTSMLQVVKMENSRIIAEHQAILKVEQK-------MITETFQEQNLLLDAAHASITGELQAVQNEKA 360
Cdd:TIGR00618 331 AAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREIScqqhtltQHIHTLQQQKTTLTQKLQSLCKELDILQREQA 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 361 Q----------LQIHLDHliLEHNQCLQKSQEAEKRTVVQKELLESTIA-RLQGELKASLQEKKSLLEKNEWFQREVNKT 429
Cdd:TIGR00618 411 TidtrtsafrdLQGQLAH--AKKQQELQQRYAELCAAAITCTAQCEKLEkIHLQESAQSLKEREQQLQTKEQIHLQETRK 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 430 EKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLEHHKATSDYQGKVEKALEKITDSKNMLAYEKGKL 509
Cdd:TIGR00618 489 KAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEI 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 510 QTKVKQLEAQLHTFAETMlqkDHLHKLNKALEvKYTQANSELSASKAYLE-------QTEAHLKEMKSILGKNEEELAQA 582
Cdd:TIGR00618 569 QQSFSILTQCDNRSKEDI---PNLQNITVRLQ-DLTEKLSEAEDMLACEQhallrklQPEQDLQDVRLHLQQCSQELALK 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 583 VKCRDAALKESQKLKGDLKALEDRESKKVGNFQKQLAEAKEDNCK--VTIMLENVLASHSKMQGALEKVQIELGRRD--- 657
Cdd:TIGR00618 645 LTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKeqLTYWKEMLAQCQTLLRELETHIEEYDREFNeie 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 658 ----SEIAGLKKERSLNQQRVQKLEAEVDqWQARMLIVEAQHGSEIEPLQKSLDITRED--------NRKLAMSLEQALQ 725
Cdd:TIGR00618 725 nassSLGSDLAAREDALNQSLKELMHQAR-TVLKARTEAHFNNNEEVTAALQTGAELSHlaaeiqffNRLREEDTHLLKT 803
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039730352 726 TNGHLQSKLDH-LQEKLESKERERQSLEAFKEQVAEESKVEAELHAE--RIEALRKQFQTERETAKKASQRE 794
Cdd:TIGR00618 804 LEAEIGQEIPSdEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQllKYEECSKQLAQLTQEQAKIIQLS 875
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
638-968 |
1.01e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.19 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 638 SHSKMQGALEKVQIELGRRDseiaglKKERSLNQQRVQKLEAEVDQWQA---RMLIVEAQHGSEIEPLQKSLDITREDNR 714
Cdd:pfam17380 285 SERQQQEKFEKMEQERLRQE------KEEKAREVERRRKLEEAEKARQAemdRQAAIYAEQERMAMERERELERIRQEER 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 715 KLAMSL--EQALQTNGHLQSKLDHLQ-EKLESKERERQSLEAfkeqvAEESKVEAELHAERIEALRKQFQTERETAKKAS 791
Cdd:pfam17380 359 KRELERirQEEIAMEISRMRELERLQmERQQKNERVRQELEA-----ARKVKILEEERQRKIQQQKVEMEQIRAEQEEAR 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 792 QREVSELKKAldeanfRSVEVSRANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQiEMELRQM 871
Cdd:pfam17380 434 QREVRRLEEE------RAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEK-ELEERKQ 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 872 EIIKDQYQKKnyeqslsiqrfvsemnTLQKEMELLTKSQYETSARNKQQELRlvaerkmrleleNRCKELEETIRHLKRC 951
Cdd:pfam17380 507 AMIEEERKRK----------------LLEKEMEERQKAIYEEERRREAEEER------------RKQQEMEERRRIQEQM 558
|
330
....*....|....*..
gi 1039730352 952 KEATENKLKEASVESEQ 968
Cdd:pfam17380 559 RKATEERSRLEAMERER 575
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
126-683 |
2.07e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.02 E-value: 2.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 126 LTATLEIATETKKNAAVIEEELKTTKRKMNLKIQELRRQLAQEKLVRESLETSASSMLLKVQEMGSVVEAERQQVHALQE 205
Cdd:pfam05483 196 ILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 206 KCTALHSSMKTTQDLLAQEQRKNEDLGMTISQ-------LKSDLNSRDNLICKLVEENKATQISLKKEHEENIY------ 272
Cdd:pfam05483 276 KTKLQDENLKELIEKKDHLTKELEDIKMSLQRsmstqkaLEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFvvtefe 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 273 ---------LKSEILSLQDVSGKAQVLNDQLSKKCSELTSMLQVVKMENSRIiAEHQAILKVEQKMITETFQEQNLL--L 341
Cdd:pfam05483 356 attcsleelLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVEL-EELKKILAEDEKLLDEKKQFEKIAeeL 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 342 DAAHASITGELQAVQNEKAQLQIHLDHLILEHNQCLQKSQEAekRTVVQKELLESTiaRLQGELKASLQEKKSLLEKNEW 421
Cdd:pfam05483 435 KGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDL--KTELEKEKLKNI--ELTAHCDKLLLENKELTQEASD 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 422 FQREVNKTEKEVAKEKCNLEKELaeskedinvlnQNLQTLMEENKHLTNKMASLEhhKATSDYQGKVEKALEKITDSKNM 501
Cdd:pfam05483 511 MTLELKKHQEDIINCKKQEERML-----------KQIENLEEKEMNLRDELESVR--EEFIQKGDEVKCKLDKSEENARS 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 502 LAYEKGKLQTKVKQLEAQLHTFAETMLQK----DHLHKLNKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGK--- 574
Cdd:pfam05483 578 IEYEVLKKEKQMKILENKCNNLKKQIENKnkniEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEiid 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 575 -----------NEEELAQAVKCRDAALKESQKLKgdlKALEDRESKKVGNFQKQLAEAKEDNCKVTIMLENVLA----SH 639
Cdd:pfam05483 658 nyqkeiedkkiSEEKLLEEVEKAKAIADEAVKLQ---KEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGlyknKE 734
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 1039730352 640 SKMQGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQ 683
Cdd:pfam05483 735 QEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKE 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
836-1011 |
2.33e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.97 E-value: 2.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 836 KLKNQRAQIKLHLSAKANNAQNmERMKQIEMELRQMEIIKDQYQKKNYEQSLSIQRFVSEMNTLQKEMELLTKSQYETSA 915
Cdd:TIGR02168 217 ELKAELRELELALLVLRLEELR-EELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 916 R---------------------NKQQELRLVAERKMRLELENRCKELEETIRHLKRCKEATENKLKEA---SVESEQITA 971
Cdd:TIGR02168 296 EisrleqqkqilrerlanlerqLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELeaeLEELESRLE 375
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1039730352 972 NLEEAHRWFKCRFDGL--QLELTKNRLQRLPREDRWLEENQD 1011
Cdd:TIGR02168 376 ELEEQLETLRSKVAQLelQIASLNNEIERLEARLERLEDRRE 417
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
439-798 |
2.58e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 2.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 439 NLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLEH-HKATSDYQGKVEKAlekitdsknMLAYEKGK-----LQTK 512
Cdd:PRK04863 290 ELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQdYQAASDHLNLVQTA---------LRQQEKIEryqadLEEL 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 513 VKQLEAQLHTFAETMLQKDhlhklnkALEVKYTQANSELSASKAYL---------EQTEA--------HLKEMKSILGKN 575
Cdd:PRK04863 361 EERLEEQNEVVEEADEQQE-------ENEARAEAAEEEVDELKSQLadyqqaldvQQTRAiqyqqavqALERAKQLCGLP 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 576 EEELAQAVKCRDAALKESQKLKGDLKALEDRESKKvGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQ--GALEKVQIEL 653
Cdd:PRK04863 434 DLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVA-QAAHSQFEQAYQLVRKIAGEVSRSEAWDVAREllRRLREQRHLA 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 654 GRRDSEIAGLK--KERSLNQQRVQKLEAEVDQWQARMLIVEA---QHGSEIEPLQKSLDITREDNRKLAMSLEQALQTNG 728
Cdd:PRK04863 513 EQLQQLRMRLSelEQRLRQQQRAERLLAEFCKRLGKNLDDEDeleQLQEELEARLESLSESVSEARERRMALRQQLEQLQ 592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 729 --------------HLQSKLDHLQEKLESKERERQSLEAFKEQVAEESKvEAELHAERIEALRKQFQTEREtakKASQRE 794
Cdd:PRK04863 593 ariqrlaarapawlAAQDALARLREQSGEEFEDSQDVTEYMQQLLERER-ELTVERDELAARKQALDEEIE---RLSQPG 668
|
....
gi 1039730352 795 VSEL 798
Cdd:PRK04863 669 GSED 672
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
377-595 |
2.90e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.35 E-value: 2.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 377 LQKSQEAEKRTVVQKELLESTIARLQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKekcnLEKELAESKEDINVLNQ 456
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAE----AEAEIEERREELGERAR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 457 NLQtlmeENKHLTNKMASLEHHKATSDYQGKVEkALEKITDSKNMLAYEKGKLQTKVKQLEAQLhtfaetMLQKDHLHKL 536
Cdd:COG3883 94 ALY----RSGGSVSYLDVLLGSESFSDFLDRLS-ALSKIADADADLLEELKADKAELEAKKAEL------EAKLAELEAL 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1039730352 537 NKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQK 595
Cdd:COG3883 163 KAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAA 221
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
65-811 |
3.34e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.64 E-value: 3.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 65 HLQTEKESNPQKTAFLNDQLNIIQGEHSKGLKLLQLEVMNLRQQLKVVKEEEDRAQDEMQRLTATLEIATETKKNAAVIE 144
Cdd:pfam15921 75 HIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHEL 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 145 EELKTTKRKM----NLKIQELRRQLaqekLVRESLETSASSMLLKVQEmgsvveAERQQVHALQEKCTALHSSMKTTQDL 220
Cdd:pfam15921 155 EAAKCLKEDMledsNTQIEQLRKMM----LSHEGVLQEIRSILVDFEE------ASGKKIYEHDSMSTMHFRSLGSAISK 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 221 LAQEqrknedLGMTISQLKSDLNSRDNLICKLVEENKATQISLKKEHEENI--YLKSEILSLQDVSGKAQVLNDQLSKKC 298
Cdd:pfam15921 225 ILRE------LDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIeqLISEHEVEITGLTEKASSARSQANSIQ 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 299 SELTSMLQVVKMENSRIIAEHQAI------LKVEQKMITETFQEQNLLLDAAHASITGELQAVQNEKAQLQIHLDHLILE 372
Cdd:pfam15921 299 SQLEIIQEQARNQNSMYMRQLSDLestvsqLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQ 378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 373 HNQCLQKSQEAEKRTVVQKELLESTIARLQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKCNLEKELA------E 446
Cdd:pfam15921 379 LQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAaiqgknE 458
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 447 SKEDINVLNQNLQTLMEENK----HLTNKMASLEHHKAT-SDYQGKVEKALEKITDSKNMLAYEKGKLQTKVKQLEaqlh 521
Cdd:pfam15921 459 SLEKVSSLTAQLESTKEMLRkvveELTAKKMTLESSERTvSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQ---- 534
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 522 tfaETMLQKDHLHKLN---KALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQklkg 598
Cdd:pfam15921 535 ---HLKNEGDHLRNVQtecEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQ---- 607
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 599 DLKALEDRESKKVGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERSLNQQ--RVQK 676
Cdd:pfam15921 608 EFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRnfRNKS 687
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 677 LEAEVDQWQARMLIVEAQhgSEIEPLQ---KSLDITREDNRKLAMSLEQALQTN----GHLQSKLDHLQEKLESKERERQ 749
Cdd:pfam15921 688 EEMETTTNKLKMQLKSAQ--SELEQTRntlKSMEGSDGHAMKVAMGMQKQITAKrgqiDALQSKIQFLEEAMTNANKEKH 765
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039730352 750 SLEAFKEQVAEE-SKVEAELH--AERIEALRKQfqtERETAKKASQREVselkkALDEANFRSVE 811
Cdd:pfam15921 766 FLKEEKNKLSQElSTVATEKNkmAGELEVLRSQ---ERRLKEKVANMEV-----ALDKASLQFAE 822
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
106-230 |
5.09e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 5.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 106 RQQLKVVKEEEDRAQDEMQRLTATLEIATETKKNAAVIEEELKTTKRKMNL-KIQELRRQLAQEKLVRESLETSASSMLL 184
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGdRLEQLEREIERLERELEERERRRARLEA 366
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1039730352 185 KVQEMGSVVEAERQQVHALQEKCTALHSSMKTTQDLLAQEQRKNED 230
Cdd:COG4913 367 LLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEA 412
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
118-977 |
5.44e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.80 E-value: 5.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 118 RAQDEMQRLTATLEIATETKKNAAVIEEELKTTKRKMNLKIQELRRQLAQEKLVRESLETSASSMLLKVQEmgsvVEAER 197
Cdd:TIGR00606 186 KALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKE----IEHNL 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 198 QQVHALQEKCTALHSSMKTTQDLLAQ-EQRKNEDLGMTISQLKSDLNSRDNLICKLVEENKATQISLKKEHEENIYLKSE 276
Cdd:TIGR00606 262 SKIMKLDNEIKALKSRKKQMEKDNSElELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 277 ILSLQDVSGKAQVLNDQLSKKCSELTSMLQVVKMENSRIIAEHQAILKV---------------EQKMITETFQEQNLLL 341
Cdd:TIGR00606 342 KTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERqiknfhtlvierqedEAKTAAQLCADLQSKE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 342 DAAHASITGELQAVQNEKAQLQIHLDHLILEHNQCLQKSQEAEKRTVVQKELLESTIARLQGELKASLQEKKSLLEKNEW 421
Cdd:TIGR00606 422 RLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKK 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 422 FQREVNKTEKEVAKEKCNLEKELAESKEDINVLNQNL----------QTLMEENKHLTNKMASL---------------- 475
Cdd:TIGR00606 502 EVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEmltkdkmdkdEQIRKIKSRHSDELTSLlgyfpnkkqledwlhs 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 476 --EHHKATSDYQGKVEKALEKITDSKNMLAYEKGKLQTKVKQLEAQLHTFAETMLQKDHLHKLNKALEVKYTQANSELSA 553
Cdd:TIGR00606 582 ksKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGA 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 554 SKAYLE--------------------QTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKKVGN 613
Cdd:TIGR00606 662 TAVYSQfitqltdenqsccpvcqrvfQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDL 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 614 FQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRD------SEIAGLKKERSLNQQRVQKLEAEVDQWQAR 687
Cdd:TIGR00606 742 KEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKvcltdvTIMERFQMELKDVERKIAQQAAKLQGSDLD 821
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 688 MLIVEAQHgsEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQSLEAFKEQVAEESKVEAE 767
Cdd:TIGR00606 822 RTVQQVNQ--EKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQS 899
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 768 LHAE---------RIEALRKQFQTE-------RETAKKASQREVSELKKALDEANFRSVEVSR-----ANRELRHKATEL 826
Cdd:TIGR00606 900 LIREikdakeqdsPLETFLEKDQQEkeelissKETSNKKAQDKVNDIKEKVKNIHGYMKDIENkiqdgKDDYLKQKETEL 979
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 827 EKVVNSNKEKLKNQ-RAQIKLHLSAKANNAQNMER--------MKQIEMELRQMEIIKDQYQKKNYEQSLSIQRfvSEMN 897
Cdd:TIGR00606 980 NTVNAQLEECEKHQeKINEDMRLMRQDIDTQKIQErwlqdnltLRKRENELKEVEEELKQHLKEMGQMQVLQMK--QEHQ 1057
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 898 TLQKEMELLTKSQYETSARNKQ-QELRLVAERKMRlelENRCKELEETIRHLKRCKEATENKLKEASVESEQITANLEEA 976
Cdd:TIGR00606 1058 KLEENIDLIKRNHVLALGRQKGyEKEIKHFKKELR---EPQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKF 1134
|
.
gi 1039730352 977 H 977
Cdd:TIGR00606 1135 H 1135
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
95-283 |
5.78e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.81 E-value: 5.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 95 LKLLQLEVMNLRQQLKVVKEEEDRAQDEMQRLTATLEIATETKKNAAVIEEELKTTKRKMNLKIQELRRQLAQEKLVRES 174
Cdd:TIGR02168 812 LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL 891
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 175 LETSASSMLLKVQEMGSVVEAERQQVHALQEKctalhssmkttqdlLAQEQRKNEDLGMTISQLKSDLNSRDNLICKLVE 254
Cdd:TIGR02168 892 LRSELEELSEELRELESKRSELRRELEELREK--------------LAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAE 957
|
170 180 190
....*....|....*....|....*....|
gi 1039730352 255 ENKATQI-SLKKEHEENIYLKSEILSLQDV 283
Cdd:TIGR02168 958 ALENKIEdDEEEARRRLKRLENKIKELGPV 987
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
95-281 |
6.30e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 6.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 95 LKLLQLEVMNLRQQLKVVKEEEDRAQDEMQRLTATLEIAT----ETKKNAAVIEEELKTTKRKmnlkIQELRRQLA-QEK 169
Cdd:COG4942 29 LEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALArrirALEQELAALEAELAELEKE----IAELRAELEaQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 170 LVRESLET-----------------SASSMLLKVQEMGSVVEAERQQVHALQEKCTALHSSMKTTQDLLAQEQRKNEDLG 232
Cdd:COG4942 105 ELAELLRAlyrlgrqpplalllspeDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELE 184
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1039730352 233 MTISQLKSDLNSRDNLICKLVEENKATQISLKKEHEENIYLKSEILSLQ 281
Cdd:COG4942 185 EERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
558-953 |
7.41e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.41 E-value: 7.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 558 LEQTEAHLKEMKS-ILGKNEEELAQAVKCRDAALKEsqkLKGDLKALEDreskkvgnfQKQLAEAKEDNckvtimLENVL 636
Cdd:PRK02224 182 LSDQRGSLDQLKAqIEEKEEKDLHERLNGLESELAE---LDEEIERYEE---------QREQARETRDE------ADEVL 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 637 ASHSKMQGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARM--LIVEAQHGS--------EIEPLQKSL 706
Cdd:PRK02224 244 EEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERddLLAEAGLDDadaeaveaRREELEDRD 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 707 DITREDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQSLEAfkeqVAEESKVEAELHAERIEALRKQFQTERE- 785
Cdd:PRK02224 324 EELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELES----ELEEAREAVEDRREEIEELEEEIEELREr 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 786 -----TAKKASQREVSELKKALDEANFRSVEVSRANRELRHKATELEKVVNSNK------------------------EK 836
Cdd:PRK02224 400 fgdapVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKcpecgqpvegsphvetieedrervEE 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 837 LKNQRAQIKLHLSAKANNAQNMERMKQIEmelRQMEIIKDqyQKKNYEQSLSIQRFVSEMNTLQKEMELLTKSQYETSAR 916
Cdd:PRK02224 480 LEAELEDLEEEVEEVEERLERAEDLVEAE---DRIERLEE--RREDLEELIAERRETIEEKRERAEELRERAAELEAEAE 554
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 1039730352 917 NKQ---QELRLVAERKMRL--ELENRCKELEETIRHLKRCKE 953
Cdd:PRK02224 555 EKReaaAEAEEEAEEAREEvaELNSKLAELKERIESLERIRT 596
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
543-829 |
7.67e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.21 E-value: 7.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 543 KYTQANSELSASKAYLEQTEAHLKEMKSIlgknEEELAQAVKCRDAALKEsqklkgDLKALEDRESKKVGNFQKQLAEAK 622
Cdd:pfam12128 245 KLQQEFNTLESAELRLSHLHFGYKSDETL----IASRQEERQETSAELNQ------LLRTLDDQWKEKRDELNGELSAAD 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 623 EDNCKVTIMLENVLASHSKMQGA-LEKVQIELGRRD---SEIAGLKKERSLNQQRVQKLEAEvdqWQARMLIVEAQHGSE 698
Cdd:pfam12128 315 AAVAKDRSELEALEDQHGAFLDAdIETAAADQEQLPswqSELENLEERLKALTGKHQDVTAK---YNRRRSKIKEQNNRD 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 699 IEPLQKSLDITREDNRKLAMSLEQALQTnghLQSKL--DHLQEKLESKERERQSLEAFKE--------QVAEESKVEAEL 768
Cdd:pfam12128 392 IAGIKDKLAKIREARDRQLAVAEDDLQA---LESELreQLEAGKLEFNEEEYRLKSRLGElklrlnqaTATPELLLQLEN 468
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039730352 769 HAERIEALRKQfQTERETAKKASQREVSELKKALDEANFRSVEVSRANRELRHKATELEKV 829
Cdd:pfam12128 469 FDERIERAREE-QEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQ 528
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
535-815 |
7.87e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.30 E-value: 7.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 535 KLNKALeVKYTQANSELSASKAylEQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRES--KKVG 612
Cdd:PRK05771 54 KLSEAL-DKLRSYLPKLNPLRE--EKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIErlEPWG 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 613 NFqkqlaeakednckvTIMLENVLASHSkmqgalekVQIELGRRDSEIAGLKKERSlnQQRVQKLEAEVDQWQARMLIVE 692
Cdd:PRK05771 131 NF--------------DLDLSLLLGFKY--------VSVFVGTVPEDKLEELKLES--DVENVEYISTDKGYVYVVVVVL 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 693 AQHGSEIEPLQKSLDITREDnrklamsleqaLQTNGHLQSKLDHLQEKLESKERERQS----LEAFKEQVAEESKVEAEL 768
Cdd:PRK05771 187 KELSDEVEEELKKLGFERLE-----------LEEEGTPSELIREIKEELEEIEKERESlleeLKELAKKYLEELLALYEY 255
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1039730352 769 ---HAERIEALRKQFQTERETAKKA--SQREVSELKKALDEANFRSVEVSRA 815
Cdd:PRK05771 256 leiELERAEALSKFLKTDKTFAIEGwvPEDRVKKLKELIDKATGGSAYVEFV 307
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
91-433 |
8.49e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 40.45 E-value: 8.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 91 HSKGLKLLQLEVMNLRQQLKVVKEEEDRAQDEMQRLTATLEIATETKKNAAVIEEELKTTKRKMNLKIqelrrqlaqekl 170
Cdd:COG5022 767 ALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRE------------ 834
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 171 vRESLETSASSMLLKvQEMGSVVEAeRQQVHALQEKCTALHSSMKtTQDLLAQEQRKNEDLGmTISQLKSDLNSRDNLIC 250
Cdd:COG5022 835 -TEEVEFSLKAEVLI-QKFGRSLKA-KKRFSLLKKETIYLQSAQR-VELAERQLQELKIDVK-SISSLKLVNLELESEII 909
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 251 KLVEenkatqiSLKKEHEENIYLKSE-ILSLQDVSGKAQVLNDQLSKKCSEltSMLQVVKMENSRiIAEHQAILKVEQKM 329
Cdd:COG5022 910 ELKK-------SLSSDLIENLEFKTElIARLKKLLNNIDLEEGPSIEYVKL--PELNKLHEVESK-LKETSEEYEDLLKK 979
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 330 ITETFQEQN------LLLDAAHASITGELQAVQNEKAQLQiHLDHLILEHNQCLQKSQEA------EKRTVVQKELLEST 397
Cdd:COG5022 980 STILVREGNkanselKNFKKELAELSKQYGALQESTKQLK-ELPVEVAELQSASKIISSEstelsiLKPLQKLKGLLLLE 1058
|
330 340 350
....*....|....*....|....*....|....*...
gi 1039730352 398 IARLQGELKASLQEKKSLL--EKNEWFQREVNKTEKEV 433
Cdd:COG5022 1059 NNQLQARYKALKLRRENSLldDKQLYQLESTENLLKTI 1096
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
383-595 |
9.30e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 9.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 383 AEKRTVVQKEL--LESTIARLQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKekcnLEKELAESKEDINVLNQNLQT 460
Cdd:COG4942 19 ADAAAEAEAELeqLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRA----LEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730352 461 LMEENKHLTNKMASLEHHKATSDYQGKVEKAL--EKITDSKNMLAYEKG----------KLQTKVKQLEAQLHTFAETML 528
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLALLLspEDFLDAVRRLQYLKYlaparreqaeELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039730352 529 QKDHLHKLNKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQK 595
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| |
