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Conserved domains on  [gi|1034585080|ref|XP_016876282|]
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katanin p60 ATPase-containing subunit A-like 1 isoform X2 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RecA-like_KTNA1 cd19522
Katanin p60 ATPase-containing subunit A1; Katanin p60 ATPase-containing subunit A1 (KTNA1) is ...
 41-210 1.60e-133

Katanin p60 ATPase-containing subunit A1; Katanin p60 ATPase-containing subunit A1 (KTNA1) is the catalytic subunit of the Katanin complex which is severs microtubules in an ATP-dependent manner, and is implicated in multiple aspects of microtubule dynamics. In addition to the p60 catalytic ATPase subunit, Katanin contains an accessory subunit (p80 or p80-like). The microtubule-severing activity of the ATPase is essential for female meiotic spindle assembly, and male gamete production; and the katanin complex severing microtubules is under tight regulation during the transition from the meiotic to mitotic stage to allow proper embryogenesis. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


:

Pssm-ID: 410930 [Multi-domain]  Cd Length: 170  Bit Score: 376.25  E-value: 1.60e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  41 DIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKL 120
Cdd:cd19522     1 DIADLEEAKKLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKYRGESEKL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 121 VRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEAL 200
Cdd:cd19522    81 VRLLFEMARFYAPTTIFIDEIDSICSRRGTSEEHEASRRVKSELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEAL 160

                         170
                  ....*....|
gi 1034585080 201 RRRLEKRIYI 210
Cdd:cd19522   161 RRRLEKRIYI 170
AAA_lid_3 pfam17862
AAA+ lid domain; This entry represents the alpha helical AAA+ lid domain that is found to the ...
 234-278 7.53e-12

AAA+ lid domain; This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains.


:

Pssm-ID: 465537 [Multi-domain]  Cd Length: 45  Bit Score: 59.09  E-value: 7.53e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1034585080 234 DIQLEDIAEKIEGYSGADITNVCRDASLMAMRRRINGLSPEEIRA 278
Cdd:pfam17862   1 DVDLEELAERTEGFSGADLEALCREAALAALRRGLEAVTQEDLEE 45
Vps4_C super family cl07827
Vps4 C terminal oligomerization domain; This domain is found at the C terminal of ATPase ...
 282-320 1.37e-08

Vps4 C terminal oligomerization domain; This domain is found at the C terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerization.


The actual alignment was detected with superfamily member pfam09336:

Pssm-ID: 462762 [Multi-domain]  Cd Length: 61  Bit Score: 50.57  E-value: 1.37e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1034585080 282 EELQMP-VTKGDFELALKKIAKSVSAADLEKYEKWMVEFG 320
Cdd:pfam09336  22 DKLLEPpVTMKDFLKALKSSRPTVSKEDLEKYEEFTKEFG 61
 
Name Accession Description Interval E-value
RecA-like_KTNA1 cd19522
Katanin p60 ATPase-containing subunit A1; Katanin p60 ATPase-containing subunit A1 (KTNA1) is ...
 41-210 1.60e-133

Katanin p60 ATPase-containing subunit A1; Katanin p60 ATPase-containing subunit A1 (KTNA1) is the catalytic subunit of the Katanin complex which is severs microtubules in an ATP-dependent manner, and is implicated in multiple aspects of microtubule dynamics. In addition to the p60 catalytic ATPase subunit, Katanin contains an accessory subunit (p80 or p80-like). The microtubule-severing activity of the ATPase is essential for female meiotic spindle assembly, and male gamete production; and the katanin complex severing microtubules is under tight regulation during the transition from the meiotic to mitotic stage to allow proper embryogenesis. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410930 [Multi-domain]  Cd Length: 170  Bit Score: 376.25  E-value: 1.60e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  41 DIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKL 120
Cdd:cd19522     1 DIADLEEAKKLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKYRGESEKL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 121 VRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEAL 200
Cdd:cd19522    81 VRLLFEMARFYAPTTIFIDEIDSICSRRGTSEEHEASRRVKSELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEAL 160

                         170
                  ....*....|
gi 1034585080 201 RRRLEKRIYI 210
Cdd:cd19522   161 RRRLEKRIYI 170
RPT1 COG1222
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ...
 35-281 6.26e-93

ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440835 [Multi-domain]  Cd Length: 326  Bit Score: 279.20  E-value: 6.26e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  35 PSIHWDDIADLEEAKKLLREAVVLPMWMPDFFK--GIRRPwKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSK 112
Cdd:COG1222    73 PDVTFDDIGGLDEQIEEIREAVELPLKNPELFRkyGIEPP-KGVLLYGPPGTGKTLLAKAVAGELGAPFIRVRGSELVSK 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 113 YRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVggalendDPSKMVMVLAATNF 192
Cdd:COG1222   152 YIGEGARNVREVFELAREKAPSIIFIDEIDAIAARRTDDGTSGEVQRTVNQLLAELDGF-------ESRGDVLIIAATNR 224

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 193 PWDIDEALRR--RLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRRING 270
Cdd:COG1222   225 PDLLDPALLRpgRFDRVIEVPLPDEEAREEILKIHLRDMPLADDVDLDKLAKLTEGFSGADLKAIVTEAGMFAIREGRDT 304

                         250
                  ....*....|..
gi 1034585080 271 LSPEEIR-ALSK 281
Cdd:COG1222   305 VTMEDLEkAIEK 316
CDC48 TIGR01243
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two ...
 20-322 2.67e-80

AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.


Pssm-ID: 273521 [Multi-domain]  Cd Length: 733  Bit Score: 258.30  E-value: 2.67e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  20 KDLVEALE-------RDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFK--GIRRPwKGVLMVGPPGTGKTMLA 90
Cdd:TIGR01243 426 KDFMEALKmvepsaiREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEkmGIRPP-KGVLLFGPPGTGKTLLA 504

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  91 KAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDG 170
Cdd:TIGR01243 505 KAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDG 584

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 171 VggalendDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYS 248
Cdd:TIGR01243 585 I-------QELSNVVVIAATNRPDILDPALLRpgRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYT 657

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034585080 249 GADITNVCRDASLMAMRRRINGLSPEEIRALSKEELQ-MPVTKGDFELALKKIAKSVSAADLEKYEKWMVEFGSA 322
Cdd:TIGR01243 658 GADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKdLKVEMRHFLEALKKVKPSVSKEDMLRYERLAKELKRL 732
PRK03992 PRK03992
proteasome-activating nucleotidase; Provisional
 35-302 2.46e-72

proteasome-activating nucleotidase; Provisional


Pssm-ID: 179699 [Multi-domain]  Cd Length: 389  Bit Score: 228.56  E-value: 2.46e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  35 PSIHWDDIADLEEAKKLLREAVVLPMWMPDFFK--GIRRPwKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSK 112
Cdd:PRK03992  126 PNVTYEDIGGLEEQIREVREAVELPLKKPELFEevGIEPP-KGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK 204

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 113 YRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRR---GTSDEHEASRRVkSELLIQMDGVggalendDPSKMVMVLAA 189
Cdd:PRK03992  205 FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRtdsGTSGDREVQRTL-MQLLAEMDGF-------DPRGNVKIIAA 276

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 190 TNFPwDI-DEALRR--RLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRR 266
Cdd:PRK03992  277 TNRI-DIlDPAILRpgRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRD 355

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1034585080 267 RinglspeeiralsKEElqmpVTKGDFELALKKIAK 302
Cdd:PRK03992  356 D-------------RTE----VTMEDFLKAIEKVMG 374
AAA pfam00004
ATPase family associated with various cellular activities (AAA); AAA family proteins often ...
 76-212 3.91e-54

ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.


Pssm-ID: 459627 [Multi-domain]  Cd Length: 130  Bit Score: 173.16  E-value: 3.91e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  76 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGtSDEHE 155
Cdd:pfam00004   1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCVIFIDEIDALAGSRG-SGGDS 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1034585080 156 ASRRVKSELLIQMDGVggalenDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPL 212
Cdd:pfam00004  80 ESRRVVNQLLTELDGF------TSSNSKVIVIAATNRPDKLDPALLGRFDRIIEFPL 130
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
 72-214 1.01e-16

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 75.87  E-value: 1.01e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080   72 PWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSS-----------------STLTSKYRGESEKLVRLLFEMARFYAPT 134
Cdd:smart00382   1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYidgedileevldqllliIVGGKKASGSGELRLRLALALARKLKPD 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  135 TIFIDEIDSICsrrgtsdeheasrRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEA-LRRRLEKRIYIPLP 213
Cdd:smart00382  81 VLILDEITSLL-------------DAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPAlLRRRFDRRIVLLLI 147


                   .
gi 1034585080  214 T 214
Cdd:smart00382 148 L 148
AAA_lid_3 pfam17862
AAA+ lid domain; This entry represents the alpha helical AAA+ lid domain that is found to the ...
 234-278 7.53e-12

AAA+ lid domain; This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains.


Pssm-ID: 465537 [Multi-domain]  Cd Length: 45  Bit Score: 59.09  E-value: 7.53e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1034585080 234 DIQLEDIAEKIEGYSGADITNVCRDASLMAMRRRINGLSPEEIRA 278
Cdd:pfam17862   1 DVDLEELAERTEGFSGADLEALCREAALAALRRGLEAVTQEDLEE 45
Vps4_C pfam09336
Vps4 C terminal oligomerization domain; This domain is found at the C terminal of ATPase ...
 282-320 1.37e-08

Vps4 C terminal oligomerization domain; This domain is found at the C terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerization.


Pssm-ID: 462762 [Multi-domain]  Cd Length: 61  Bit Score: 50.57  E-value: 1.37e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1034585080 282 EELQMP-VTKGDFELALKKIAKSVSAADLEKYEKWMVEFG 320
Cdd:pfam09336  22 DKLLEPpVTMKDFLKALKSSRPTVSKEDLEKYEEFTKEFG 61
BREX_3_BrxF NF033453
BREX-3 system P-loop-containing protein BrxF; This family of proteins that are about 150 amino ...
 76-141 1.14e-03

BREX-3 system P-loop-containing protein BrxF; This family of proteins that are about 150 amino acids in length includes BrxF from type 3 BREX (bacteriophage exclusion) systems. Most members have the P-loop motif GxxGxGKT, but the region is surprisingly poorly conserved in a sizable fraction of otherwise strongly similar proteins.


Pssm-ID: 468038  Cd Length: 149  Bit Score: 38.63  E-value: 1.14e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034585080  76 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSS------TLTSKYRgeSEKLVRLLFEMARFYAPTTIFIDEI 141
Cdd:NF033453   19 ILLVGPPGSGKTALLRELAAKRGAPVINVNLElsrrllELPEKQR--ALRAPRLLDEIAEKSSGDVVLLDNI 88
 
Name Accession Description Interval E-value
RecA-like_KTNA1 cd19522
Katanin p60 ATPase-containing subunit A1; Katanin p60 ATPase-containing subunit A1 (KTNA1) is ...
 41-210 1.60e-133

Katanin p60 ATPase-containing subunit A1; Katanin p60 ATPase-containing subunit A1 (KTNA1) is the catalytic subunit of the Katanin complex which is severs microtubules in an ATP-dependent manner, and is implicated in multiple aspects of microtubule dynamics. In addition to the p60 catalytic ATPase subunit, Katanin contains an accessory subunit (p80 or p80-like). The microtubule-severing activity of the ATPase is essential for female meiotic spindle assembly, and male gamete production; and the katanin complex severing microtubules is under tight regulation during the transition from the meiotic to mitotic stage to allow proper embryogenesis. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410930 [Multi-domain]  Cd Length: 170  Bit Score: 376.25  E-value: 1.60e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  41 DIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKL 120
Cdd:cd19522     1 DIADLEEAKKLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKYRGESEKL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 121 VRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEAL 200
Cdd:cd19522    81 VRLLFEMARFYAPTTIFIDEIDSICSRRGTSEEHEASRRVKSELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEAL 160

                         170
                  ....*....|
gi 1034585080 201 RRRLEKRIYI 210
Cdd:cd19522   161 RRRLEKRIYI 170
RecA-like_VPS4-like cd19509
ATPase domain of VPS4, ATAD1, K, KTNA1, Spastin, FIGL-1 and similar ATPase domains; This ...
 42-210 2.17e-96

ATPase domain of VPS4, ATAD1, K, KTNA1, Spastin, FIGL-1 and similar ATPase domains; This subfamily includes the ATPase domains of vacuolar protein sorting-associated protein 4 (VPS4), ATPase family AAA domain-containing protein 1 (ATAD1, also known as Thorase), Katanin p60 ATPase-containing subunit A1 (KTNA1), Spastin, and Fidgetin-Like 1 (FIGL-1). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410917 [Multi-domain]  Cd Length: 163  Bit Score: 281.93  E-value: 2.17e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  42 IADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLV 121
Cdd:cd19509     1 IAGLDDAKEALKEAVILPSLRPDLFPGLRGPPRGILLYGPPGTGKTLLARAVASESGSTFFSISASSLVSKWVGESEKIV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 122 RLLFEMARFYAPTTIFIDEIDSICSRRGtSDEHEASRRVKSELLIQMDGVGgalenDDPSKMVMVLAATNFPWDIDEALR 201
Cdd:cd19509    81 RALFALARELQPSIIFIDEIDSLLSERG-SGEHEASRRVKTEFLVQMDGVL-----NKPEDRVLVLGATNRPWELDEAFL 154


                  ....*....
gi 1034585080 202 RRLEKRIYI 210
Cdd:cd19509   155 RRFEKRIYI 163
RPT1 COG1222
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ...
 35-281 6.26e-93

ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440835 [Multi-domain]  Cd Length: 326  Bit Score: 279.20  E-value: 6.26e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  35 PSIHWDDIADLEEAKKLLREAVVLPMWMPDFFK--GIRRPwKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSK 112
Cdd:COG1222    73 PDVTFDDIGGLDEQIEEIREAVELPLKNPELFRkyGIEPP-KGVLLYGPPGTGKTLLAKAVAGELGAPFIRVRGSELVSK 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 113 YRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVggalendDPSKMVMVLAATNF 192
Cdd:COG1222   152 YIGEGARNVREVFELAREKAPSIIFIDEIDAIAARRTDDGTSGEVQRTVNQLLAELDGF-------ESRGDVLIIAATNR 224

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 193 PWDIDEALRR--RLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRRING 270
Cdd:COG1222   225 PDLLDPALLRpgRFDRVIEVPLPDEEAREEILKIHLRDMPLADDVDLDKLAKLTEGFSGADLKAIVTEAGMFAIREGRDT 304

                         250
                  ....*....|..
gi 1034585080 271 LSPEEIR-ALSK 281
Cdd:COG1222   305 VTMEDLEkAIEK 316
CDC48 TIGR01243
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two ...
 20-322 2.67e-80

AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.


Pssm-ID: 273521 [Multi-domain]  Cd Length: 733  Bit Score: 258.30  E-value: 2.67e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  20 KDLVEALE-------RDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFK--GIRRPwKGVLMVGPPGTGKTMLA 90
Cdd:TIGR01243 426 KDFMEALKmvepsaiREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEkmGIRPP-KGVLLFGPPGTGKTLLA 504

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  91 KAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDG 170
Cdd:TIGR01243 505 KAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDG 584

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 171 VggalendDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYS 248
Cdd:TIGR01243 585 I-------QELSNVVVIAATNRPDILDPALLRpgRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYT 657

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034585080 249 GADITNVCRDASLMAMRRRINGLSPEEIRALSKEELQ-MPVTKGDFELALKKIAKSVSAADLEKYEKWMVEFGSA 322
Cdd:TIGR01243 658 GADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKdLKVEMRHFLEALKKVKPSVSKEDMLRYERLAKELKRL 732
RecA-like_VPS4 cd19521
ATPase domain of vacuolar protein sorting-associated protein 4; Vacuolar protein ...
 35-210 2.72e-80

ATPase domain of vacuolar protein sorting-associated protein 4; Vacuolar protein sorting-associated protein 4 (Vps4) is believed to be involved in intracellular protein transport out of a prevacuolar endosomal compartment. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410929 [Multi-domain]  Cd Length: 170  Bit Score: 241.30  E-value: 2.72e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  35 PSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYR 114
Cdd:cd19521     2 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFTGNRKPWSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 115 GESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGtSDEHEASRRVKSELLIQMDGVGgaleNDDPSkmVMVLAATNFPW 194
Cdd:cd19521    82 GESEKLVKQLFAMARENKPSIIFIDEVDSLCGTRG-EGESEASRRIKTELLVQMNGVG----NDSQG--VLVLGATNIPW 154

                         170
                  ....*....|....*.
gi 1034585080 195 DIDEALRRRLEKRIYI 210
Cdd:cd19521   155 QLDSAIRRRFEKRIYI 170
RecA-like_Figl-1 cd19525
ATPase domain of Fidgetin-Like 1 (FIGL-1); FIGL-1 may participate in DNA repair in the nucleus; ...
 19-210 2.61e-78

ATPase domain of Fidgetin-Like 1 (FIGL-1); FIGL-1 may participate in DNA repair in the nucleus; it may be involved in DNA double-strand break repair via homologous recombination. Caenorhabditis elegans FIGL-1 is a nuclear protein and controls the mitotic progression in the germ line and mouse FIGL-1 may be involved in the control of male meiosis. human FIGL-1 has been shown to be a centrosome protein involved in ciliogenesis perhaps as a microtubule-severing protein. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410933 [Multi-domain]  Cd Length: 186  Bit Score: 236.81  E-value: 2.61e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  19 DKDLVEALERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECG 98
Cdd:cd19525     1 EPKMIELIMSEIMDHGPPINWADIAGLEFAKKTIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  99 TTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSdEHEASRRVKSELLIQMDGVggaleND 178
Cdd:cd19525    81 ATFFSISASSLTSKWVGEGEKMVRALFSVARCKQPAVIFIDEIDSLLSQRGEG-EHESSRRIKTEFLVQLDGA-----TT 154

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1034585080 179 DPSKMVMVLAATNFPWDIDEALRRRLEKRIYI 210
Cdd:cd19525   155 SSEDRILVVGATNRPQEIDEAARRRLVKRLYI 186
SpoVK COG0464
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ...
 29-286 2.42e-74

AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];


Pssm-ID: 440232 [Multi-domain]  Cd Length: 397  Bit Score: 234.03  E-value: 2.42e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  29 DIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFK--GIRRPwKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSS 106
Cdd:COG0464   146 EELLELREAILDDLGGLEEVKEELRELVALPLKRPELREeyGLPPP-RGLLLYGPPGTGKTLLARALAGELGLPLIEVDL 224

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 107 STLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHeASRRVKSELLIQMDGVggaleNDDpskmVMV 186
Cdd:COG0464   225 SDLVSKYVGETEKNLREVFDKARGLAPCVLFIDEADALAGKRGEVGDG-VGRRVVNTLLTEMEEL-----RSD----VVV 294

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 187 LAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRR 266
Cdd:COG0464   295 IAATNRPDLLDPALLRRFDEIIFFPLPDAEERLEIFRIHLRKRPLDEDVDLEELAEATEGLSGADIRNVVRRAALQALRL 374

                         250       260
                  ....*....|....*....|.
gi 1034585080 267 RINGLSPEEI-RALSKEELQM 286
Cdd:COG0464   375 GREPVTTEDLlEALEREDIFL 395
PRK03992 PRK03992
proteasome-activating nucleotidase; Provisional
 35-302 2.46e-72

proteasome-activating nucleotidase; Provisional


Pssm-ID: 179699 [Multi-domain]  Cd Length: 389  Bit Score: 228.56  E-value: 2.46e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  35 PSIHWDDIADLEEAKKLLREAVVLPMWMPDFFK--GIRRPwKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSK 112
Cdd:PRK03992  126 PNVTYEDIGGLEEQIREVREAVELPLKKPELFEevGIEPP-KGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK 204

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 113 YRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRR---GTSDEHEASRRVkSELLIQMDGVggalendDPSKMVMVLAA 189
Cdd:PRK03992  205 FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRtdsGTSGDREVQRTL-MQLLAEMDGF-------DPRGNVKIIAA 276

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 190 TNFPwDI-DEALRR--RLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRR 266
Cdd:PRK03992  277 TNRI-DIlDPAILRpgRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRD 355

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1034585080 267 RinglspeeiralsKEElqmpVTKGDFELALKKIAK 302
Cdd:PRK03992  356 D-------------RTE----VTMEDFLKAIEKVMG 374
RecA-like_spastin cd19524
ATPase domain of spastin; Spastin is an ATP-dependent microtubule-severing protein involved in ...
 41-210 1.20e-65

ATPase domain of spastin; Spastin is an ATP-dependent microtubule-severing protein involved in microtubule dynamics; it specifically recognizes and cuts microtubules that are polyglutamylated. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410932 [Multi-domain]  Cd Length: 164  Bit Score: 203.93  E-value: 1.20e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  41 DIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKL 120
Cdd:cd19524     1 DIAGQDLAKQALQEMVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 121 VRLLFEMARFYAPTTIFIDEIDSICSRRGTSdEHEASRRVKSELLIQMDGVGGalendDPSKMVMVLAATNFPWDIDEAL 200
Cdd:cd19524    81 VRALFAVARELQPSIIFIDEVDSLLSERSEG-EHEASRRLKTEFLIEFDGVQS-----NGDDRVLVMGATNRPQELDDAV 154

                         170
                  ....*....|
gi 1034585080 201 RRRLEKRIYI 210
Cdd:cd19524   155 LRRFTKRVYV 164
CDC48 TIGR01243
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two ...
 24-303 5.70e-63

AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.


Pssm-ID: 273521 [Multi-domain]  Cd Length: 733  Bit Score: 212.07  E-value: 5.70e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  24 EALERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFK--GIRRPwKGVLMVGPPGTGKTMLAKAVATECGTTF 101
Cdd:TIGR01243 162 KPVREEIERKVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEhlGIEPP-KGVLLYGPPGTGKTLLAKAVANEAGAYF 240

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 102 FNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRgtsDE--HEASRRVKSELLIQMDGVGGalendd 179
Cdd:TIGR01243 241 ISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKR---EEvtGEVEKRVVAQLLTLMDGLKG------ 311

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 180 pSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCR 257
Cdd:TIGR01243 312 -RGRVIVIGATNRPDALDPALRRpgRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAK 390

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1034585080 258 DASLMAMRRRIN----GLSPEEIRALSKEELQmpVTKGDFELALKKIAKS 303
Cdd:TIGR01243 391 EAAMAALRRFIRegkiNFEAEEIPAEVLKELK--VTMKDFMEALKMVEPS 438
RecA-like_CDC48_r2-like cd19511
second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase ...
 48-210 4.99e-55

second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase domains; This subfamily includes the second of two ATPase domains of the molecular chaperone CDC48 in yeast and p97 or VCP in metazoans, Peroxisomal biogenesis factor 1 (PEX1) and -6 (PEX6), Valosin-containing protein-like ATPase (VAT), and nuclear VCP-like protein (NVL). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410919 [Multi-domain]  Cd Length: 159  Bit Score: 176.32  E-value: 4.99e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  48 AKKLLREAVVLPMWMPDFFK--GIRRPwKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLF 125
Cdd:cd19511     1 VKRELKEAVEWPLKHPDAFKrlGIRPP-KGVLLYGPPGCGKTLLAKALASEAGLNFISVKGPELFSKYVGESERAVREIF 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 126 EMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGgalenddPSKMVMVLAATNFPWDIDEALRR--R 203
Cdd:cd19511    80 QKARQAAPCIIFFDEIDSLAPRRGQSDSSGVTDRVVSQLLTELDGIE-------SLKGVVVIAATNRPDMIDPALLRpgR 152


                  ....*..
gi 1034585080 204 LEKRIYI 210
Cdd:cd19511   153 LDKLIYV 159
RecA-like_ATAD1 cd19520
ATPase domain of ATPase family AAA domain-containing protein 1 and similar ATPase domains; ...
 41-210 1.08e-54

ATPase domain of ATPase family AAA domain-containing protein 1 and similar ATPase domains; ATPase family AAA domain-containing protein 1 (ATAD1, also known as Thorase) is an ATPase that plays a critical role in regulating the surface expression of alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptors, thereby regulating synaptic plasticity, learning and memory. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410928 [Multi-domain]  Cd Length: 166  Bit Score: 175.69  E-value: 1.08e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  41 DIADLEEAKKLLREAVVLPMWMPDFFKGIR--RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESE 118
Cdd:cd19520     1 DIGGLDEVITELKELVILPLQRPELFDNSRllQPPKGVLLYGPPGCGKTMLAKATAKEAGARFINLQVSSLTDKWYGESQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 119 KLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDeHEASRRVKSELLIQMDGvggaLENDDPSKmVMVLAATNFPWDIDE 198
Cdd:cd19520    81 KLVAAVFSLASKLQPSIIFIDEIDSFLRQRSSTD-HEATAMMKAEFMSLWDG----LSTDGNCR-VIVMGATNRPQDLDE 154

                         170
                  ....*....|..
gi 1034585080 199 ALRRRLEKRIYI 210
Cdd:cd19520   155 AILRRMPKRFHI 166
RecA-like_CDC48_NLV2_r1-like cd19503
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and ...
 41-210 2.13e-54

first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. This subfamily also includes the first of the two ATPase domains of NVL (nuclear VCP-like protein) 2, an isoform of NVL mainly present in the nucleolus, which is involved in ribosome biogenesis, in telomerase assembly and the regulation of telomerase activity, and in pre-rRNA processing. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410911 [Multi-domain]  Cd Length: 165  Bit Score: 175.17  E-value: 2.13e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  41 DIADLEEAKKLLREAVVLPMWMPDFFK--GIRRPwKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESE 118
Cdd:cd19503     1 DIGGLDEQIASLKELIELPLKYPELFRalGLKPP-RGVLLHGPPGTGKTLLARAVANEAGANFLSISGPSIVSKYLGESE 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 119 KLVRLLFEMARFYAPTTIFIDEIDSICSRRGtSDEHEASRRVKSELLIQMDGVggalendDPSKMVMVLAATNFPWDIDE 198
Cdd:cd19503    80 KNLREIFEEARSHAPSIIFIDEIDALAPKRE-EDQREVERRVVAQLLTLMDGM-------SSRGKVVVIAATNRPDAIDP 151

                         170
                  ....*....|....
gi 1034585080 199 ALRR--RLEKRIYI 210
Cdd:cd19503   152 ALRRpgRFDREVEI 165
COG1223 COG1223
Predicted ATPase, AAA+ superfamily [General function prediction only];
39-311 3.68e-54

Predicted ATPase, AAA+ superfamily [General function prediction only];


Pssm-ID: 440836 [Multi-domain]  Cd Length: 246  Bit Score: 177.00  E-value: 3.68e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  39 WDDIADLEEAKKLLREAVvlpmwmpDFFKGIRRP-----W--KGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTS 111
Cdd:COG1223     1 LDDVVGQEEAKKKLKLII-------KELRRRENLrkfglWppRKILFYGPPGTGKTMLAEALAGELKLPLLTVRLDSLIG 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 112 KYRGESEKLVRLLFEMARfYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGvggalendDPSKmVMVLAATN 191
Cdd:COG1223    74 SYLGETARNLRKLFDFAR-RAPCVIFFDEFDAIAKDRGDQNDVGEVKRVVNALLQELDG--------LPSG-SVVIAATN 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 192 FPWDIDEALRRRLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDaslmAMRRRIngL 271
Cdd:COG1223   144 HPELLDSALWRRFDEVIEFPLPDKEERKEILELNLKKFPLPFELDLKKLAKKLEGLSGADIEKVLKT----ALKKAI--L 217

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1034585080 272 SPEEIralskeelqmpVTKGDFELALKKIAKSVSAADLEK 311
Cdd:COG1223   218 EDREK-----------VTKEDLEEALKQRKERKKEPKKEG 246
AAA pfam00004
ATPase family associated with various cellular activities (AAA); AAA family proteins often ...
 76-212 3.91e-54

ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.


Pssm-ID: 459627 [Multi-domain]  Cd Length: 130  Bit Score: 173.16  E-value: 3.91e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  76 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGtSDEHE 155
Cdd:pfam00004   1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCVIFIDEIDALAGSRG-SGGDS 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1034585080 156 ASRRVKSELLIQMDGVggalenDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPL 212
Cdd:pfam00004  80 ESRRVVNQLLTELDGF------TSSNSKVIVIAATNRPDKLDPALLGRFDRIIEFPL 130
RecA-like_protease cd19481
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ...
 48-210 2.30e-51

proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410889 [Multi-domain]  Cd Length: 158  Bit Score: 167.07  E-value: 2.30e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  48 AKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 127
Cdd:cd19481     1 LKASLREAVEAPRRGSRLRRYGLGLPKGILLYGPPGTGKTLLAKALAGELGLPLIVVKLSSLLSKYVGESEKNLRKIFER 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 128 ARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVggalENDDPskmVMVLAATNFPWDIDEALRR--RLE 205
Cdd:cd19481    81 ARRLAPCILFIDEIDAIGRKRDSSGESGELRRVLNQLLTELDGV----NSRSK---VLVIAATNRPDLLDPALLRpgRFD 153


                  ....*
gi 1034585080 206 KRIYI 210
Cdd:cd19481   154 EVIEF 158
HflB COG0465
ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones];
40-300 3.96e-51

ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440233 [Multi-domain]  Cd Length: 583  Bit Score: 177.92  E-value: 3.96e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  40 DDIADLEEAKKLLREAVvlpmwmpDFFK--------GIRRPwKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTS 111
Cdd:COG0465   142 DDVAGVDEAKEELQEIV-------DFLKdpekftrlGAKIP-KGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 112 KY------RgeseklVRLLFEMARFYAPTTIFIDEIDSICSRRGTS-----DEHEasrRVKSELLIQMDGVggalendDP 180
Cdd:COG0465   214 MFvgvgasR------VRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGlggghDERE---QTLNQLLVEMDGF-------EG 277

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 181 SKMVMVLAATNFPwDI-DEALRR--RLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCR 257
Cdd:COG0465   278 NEGVIVIAATNRP-DVlDPALLRpgRFDRQVVVDLPDVKGREAILKVHARKKPLAPDVDLEVIARRTPGFSGADLANLVN 356

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1034585080 258 DASLMAMRRRinglspeeiralsKEElqmpVTKGDFELALKKI 300
Cdd:COG0465   357 EAALLAARRN-------------KKA----VTMEDFEEAIDRV 382
ftsH CHL00176
cell division protein; Validated
 37-276 2.33e-50

cell division protein; Validated


Pssm-ID: 214386 [Multi-domain]  Cd Length: 638  Bit Score: 176.78  E-value: 2.33e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  37 IHWDDIADLEEAKKLLREAVVLpMWMPDFFKGI-RRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRG 115
Cdd:CHL00176  180 ITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVgAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVG 258

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 116 ESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGT-----SDEHEasrRVKSELLIQMDGVGGalenddpSKMVMVLAAT 190
Cdd:CHL00176  259 VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAgigggNDERE---QTLNQLLTEMDGFKG-------NKGVIVIAAT 328

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 191 NFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRRI 268
Cdd:CHL00176  329 NRVDILDAALLRpgRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKK 408


                  ....*...
gi 1034585080 269 NGLSPEEI 276
Cdd:CHL00176  409 ATITMKEI 416
PTZ00454 PTZ00454
26S protease regulatory subunit 6B-like protein; Provisional
 31-266 9.35e-50

26S protease regulatory subunit 6B-like protein; Provisional


Pssm-ID: 240423 [Multi-domain]  Cd Length: 398  Bit Score: 170.33  E-value: 9.35e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  31 VSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFK--GIRRPwKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSST 108
Cdd:PTZ00454  136 MSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEqiGIDPP-RGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSE 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 109 LTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRR---GTSDEHEAsRRVKSELLIQMDGVggalendDPSKMVM 185
Cdd:PTZ00454  215 FVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRfdaQTGADREV-QRILLELLNQMDGF-------DQTTNVK 286

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 186 VLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMA 263
Cdd:PTZ00454  287 VIMATNRADTLDPALLRpgRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQA 366


                  ...
gi 1034585080 264 MRR 266
Cdd:PTZ00454  367 VRK 369
PTZ00361 PTZ00361
26 proteosome regulatory subunit 4-like protein; Provisional
 31-300 2.79e-49

26 proteosome regulatory subunit 4-like protein; Provisional


Pssm-ID: 185575 [Multi-domain]  Cd Length: 438  Bit Score: 169.95  E-value: 2.79e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  31 VSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFK--GIRRPwKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSST 108
Cdd:PTZ00361  174 VDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDdiGIKPP-KGVILYGPPGTGKTLLAKAVANETSATFLRVVGSE 252

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 109 LTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRR--GTSDEHEASRRVKSELLIQMDGVggalendDPSKMVMV 186
Cdd:PTZ00361  253 LIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRydATSGGEKEIQRTMLELLNQLDGF-------DSRGDVKV 325

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 187 LAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAM 264
Cdd:PTZ00361  326 IMATNRIESLDPALIRpgRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLAL 405

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1034585080 265 RRRinglspeeiralskeelQMPVTKGDFELALKKI 300
Cdd:PTZ00361  406 RER-----------------RMKVTQADFRKAKEKV 424
RecA-like_PAN_like cd19502
proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily ...
 39-208 5.22e-49

proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily contains ATPase subunits of the eukaryotic 26S proteasome, and of the archaeal proteasome which carry out ATP-dependent degradation of substrates of the ubiquitin-proteasome pathway. The eukaryotic 26S proteasome consists of a proteolytic 20S core particle (CP), and a 19S regulatory particle (RP) which provides the ATP-dependence and the specificity for ubiquitinated proteins. In the archaea the RP is a homohexameric complex of proteasome-activating nucleotidase (PAN). This subfamily also includes various eukaryotic 26S subunits including, proteasome 26S subunit, ATPase 2 (PSMC2, also known as S7 and MSS1) which is a member of the 19S RP and has a chaperone like activity; and proteasome 20S subunit alpha 6 (PSMA6, also known as IOTA, p27K, and PROS27) which is a member of the 20S CP. This RecA-like_PAN subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410910 [Multi-domain]  Cd Length: 171  Bit Score: 161.35  E-value: 5.22e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  39 WDDIADLEEAKKLLREAVVLPMWMPDFFK--GIRRPwKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGE 116
Cdd:cd19502     2 YEDIGGLDEQIREIREVVELPLKHPELFEelGIEPP-KGVLLYGPPGTGKTLLAKAVANHTDATFIRVVGSELVQKYIGE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 117 SEKLVRLLFEMARFYAPTTIFIDEIDSICSRR---GTSDEHEASRRVkSELLIQMDGVggalendDPSKMVMVLAATNFP 193
Cdd:cd19502    81 GARLVRELFEMAREKAPSIIFIDEIDAIGAKRfdsGTGGDREVQRTM-LELLNQLDGF-------DPRGNIKVIMATNRP 152

                         170
                  ....*....|....*..
gi 1034585080 194 WDIDEALRR--RLEKRI 208
Cdd:cd19502   153 DILDPALLRpgRFDRKI 169
RecA-like_VCP_r2 cd19529
second of two ATPase domains of Valosin-containing protein-like ATPase (VAT) and similar ...
 48-210 3.30e-47

second of two ATPase domains of Valosin-containing protein-like ATPase (VAT) and similar ATPase domains; The Valosin-containing protein-like ATPase of Thermoplasma acidophilum (VAT), is an archaeal homolog of the ubiquitous Cdc48/p97. It is a protein unfoldase that functions in concert with the 20S proteasome by unfolding proteasome substrates and passing them on for degradation. VAT forms a homohexamer, each monomer contains two tandem ATPase domains, referred to as D1 and D2, and an N-terminal domain. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410937 [Multi-domain]  Cd Length: 159  Bit Score: 156.50  E-value: 3.30e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  48 AKKLLREAVVLPMWMPDFFK--GIRRPwKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLF 125
Cdd:cd19529     1 VKQELKEAVEWPLLKPEVFKrlGIRPP-KGILLYGPPGTGKTLLAKAVATESNANFISVKGPELLSKWVGESEKAIREIF 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 126 EMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVggalendDPSKMVMVLAATNFPWDIDEALRR--R 203
Cdd:cd19529    80 RKARQVAPCVIFFDEIDSIAPRRGTTGDSGVTERVVNQLLTELDGL-------EEMNGVVVIAATNRPDIIDPALLRagR 152


                  ....*..
gi 1034585080 204 LEKRIYI 210
Cdd:cd19529   153 FDRLIYI 159
hflB PRK10733
ATP-dependent zinc metalloprotease FtsH;
1-265 2.17e-45

ATP-dependent zinc metalloprotease FtsH;


Pssm-ID: 182683 [Multi-domain]  Cd Length: 644  Bit Score: 163.28  E-value: 2.17e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080   1 MQDGASDGEMpkfdgaGYDKDLVEALERDIVSRNpsihWDDIADLEEAKKLLREAVVLpMWMPDFFK--GIRRPwKGVLM 78
Cdd:PRK10733  123 MQGGGGKGAM------SFGKSKARMLTEDQIKTT----FADVAGCDEAKEEVAELVEY-LREPSRFQklGGKIP-KGVLM 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  79 VGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGT--SDEHEA 156
Cdd:PRK10733  191 VGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAglGGGHDE 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 157 SRRVKSELLIQMDGVGGalenddpSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKINLREVELDPD 234
Cdd:PRK10733  271 REQTLNQMLVEMDGFEG-------NEGIIVIAATNRPDVLDPALLRpgRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD 343

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1034585080 235 IQLEDIAEKIEGYSGADITNVCRDASLMAMR 265
Cdd:PRK10733  344 IDAAIIARGTPGFSGADLANLVNEAALFAAR 374
RecA-like_CDC48_r1-like cd19519
first of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or VCP ...
 41-211 1.76e-43

first of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. CDC48's roles include in the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis, and in the formation of the nuclear envelope, and of the transitional endoplasmic reticulum (tER). This RecA-like_cdc48_r1-like subfamily belongs to the RecA-like family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410927 [Multi-domain]  Cd Length: 166  Bit Score: 147.20  E-value: 1.76e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  41 DIADLEEAKKLLREAVVLPMWMPDFFK--GIRRPwKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESE 118
Cdd:cd19519     1 DIGGCRKQLAQIREMVELPLRHPELFKaiGIKPP-RGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 119 KLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSdEHEASRRVKSELLIQMDGVGGalenddpSKMVMVLAATNFPWDIDE 198
Cdd:cd19519    80 SNLRKAFEEAEKNAPAIIFIDEIDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQ-------RAHVIVMAATNRPNSIDP 151

                         170
                  ....*....|....*
gi 1034585080 199 ALRR--RLEKRIYIP 211
Cdd:cd19519   152 ALRRfgRFDREIDIG 166
RecA-like_CDC48_r2-like cd19528
second of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or ...
 49-210 1.52e-42

second of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or VCP in metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the second of the two ATPase domains. CDC48's roles include in the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis, and in the formation of the nuclear envelope, and of the transitional endoplasmic reticulum (tER). This RecA-like_cdc48_r2-like subfamily belongs to the RecA-like family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410936 [Multi-domain]  Cd Length: 161  Bit Score: 144.58  E-value: 1.52e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  49 KKLLREAVVLPMWMPD-FFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 127
Cdd:cd19528     2 KRELQELVQYPVEHPDkFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDK 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 128 ARFYAPTTIFIDEIDSICSRRGTS--DEHEASRRVKSELLIQMDGVggalendDPSKMVMVLAATNFPWDIDEALRR--R 203
Cdd:cd19528    82 ARAAAPCVLFFDELDSIAKARGGNigDAGGAADRVINQILTEMDGM-------NTKKNVFIIGATNRPDIIDPAILRpgR 154


                  ....*..
gi 1034585080 204 LEKRIYI 210
Cdd:cd19528   155 LDQLIYI 161
RecA-like_fidgetin cd19523
ATPase domain of fidgetin; Fidgetin (FIGN) is a ATP-dependent microtubule severing protein. ...
 41-210 6.63e-42

ATPase domain of fidgetin; Fidgetin (FIGN) is a ATP-dependent microtubule severing protein. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410931 [Multi-domain]  Cd Length: 163  Bit Score: 142.72  E-value: 6.63e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  41 DIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKL 120
Cdd:cd19523     1 DIAGLGALKAAIKEEVLWPLLRPDAFSGLLRLPRSILLFGPRGTGKTLLGRCLASQLGATFLRLRGSTLVAKWAGEGEKI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 121 VRLLFEMARFYAPTTIFIDEIDSICSRRgtSDEHEASRRVKSELLIQMDGVGGAlenddPSKMVMVLAATNFPWDIDEAL 200
Cdd:cd19523    81 LQASFLAARCRQPSVLFISDLDALLSSQ--DDEASPVGRLQVELLAQLDGVLGS-----GEDGVLVVCTTSKPEEIDESL 153

                         170
                  ....*....|
gi 1034585080 201 RRRLEKRIYI 210
Cdd:cd19523   154 RRYFSKRLLV 163
RecA-like_FtsH cd19501
ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc ...
 37-210 6.32e-41

ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. It is anchored to the cytoplasmic membrane such that the amino- and carboxy-termini are exposed to the cytoplasm. It presents a membrane-bound hexameric structure that is able to unfold and degrade protein substrates. It is comprised of an N-terminal transmembrane region and the larger C-terminal cytoplasmic region, which consists of an ATPase domain and a protease domain. This RecA-Like FTsH subfamily represents the ATPase domain, and belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410909 [Multi-domain]  Cd Length: 171  Bit Score: 140.45  E-value: 6.32e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  37 IHWDDIADLEEAKKLLREAVvlpmwmpDFFK--------GIRRPwKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSST 108
Cdd:cd19501     1 VTFKDVAGCEEAKEELKEVV-------EFLKnpekftklGAKIP-KGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSD 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 109 LTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGT--SDEHEASRRVKSELLIQMDGVGGalenddpSKMVMV 186
Cdd:cd19501    73 FVEMFVGVGASRVRDLFEQAKKNAPCIVFIDEIDAVGRKRGAglGGGHDEREQTLNQLLVEMDGFES-------NTGVIV 145

                         170       180
                  ....*....|....*....|....*.
gi 1034585080 187 LAATNFPWDIDEALRR--RLEKRIYI 210
Cdd:cd19501   146 IAATNRPDVLDPALLRpgRFDRQVYV 171
RecA-like_NVL_r2-like cd19530
second of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL ...
 45-210 2.54e-39

second of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL exists in two forms with N-terminal extensions of different lengths in mammalian cells. NVL has two alternatively spliced isoforms, a short form, NVL1, and a long form, NVL2. NVL2, the major species, is mainly present in the nucleolus, whereas NVL1 is nucleoplasmic. Each has an N-terminal domain, followed by two tandem ATPase domains; this subfamily includes the first of the two ATPase domains. NVL2 is involved in the biogenesis of the 60S ribosome subunit by associating specifically with ribosome protein L5 and modulating the function of DOB1. NVL2 is also required for telomerase assembly and the regulation of telomerase activity, and is involved in pre-rRNA processing. The role of NVL1 is unclear. This RecA-like_NVL_r1-like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410938 [Multi-domain]  Cd Length: 161  Bit Score: 136.08  E-value: 2.54e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  45 LEEAKKLLREAVVLPMWMPDFFK--GIRRPwKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVR 122
Cdd:cd19530     1 LDHVREELTMSILRPIKRPDIYKalGIDLP-TGVLLYGPPGCGKTLLAKAVANESGANFISVKGPELLNKYVGESERAVR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 123 LLFEMARFYAPTTIFIDEIDSICSRRGTSdEHEASRRVKSELLIQMDGVGGALEnddpskmVMVLAATNFPWDIDEALRR 202
Cdd:cd19530    80 QVFQRARASAPCVIFFDEVDALVPKRGDG-GSWASERVVNQLLTEMDGLEERSN-------VFVIAATNRPDIIDPAMLR 151

                         170
                  ....*....|
gi 1034585080 203 --RLEKRIYI 210
Cdd:cd19530   152 pgRLDKTLYV 161
RecA-like_PEX1_r2 cd19526
second of two ATPase domains of Peroxisomal biogenesis factor 1 (PEX1); PEX1(also known as ...
 48-209 4.57e-37

second of two ATPase domains of Peroxisomal biogenesis factor 1 (PEX1); PEX1(also known as Peroxin-1)/PEX6 is a protein unfoldase; PEX1 and PEX6 form a heterohexameric Type-2 AAA-ATPase complex and are essential for peroxisome biogenesis as they are required for the import of folded proteins into the peroxisomal matrix. PEX-1 is required for stability of PEX5. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410934 [Multi-domain]  Cd Length: 158  Bit Score: 130.24  E-value: 4.57e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  48 AKKLLREAVVLPMWMPDFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFE 126
Cdd:cd19526     1 VKKALEETIEWPSKYPKIFASSPlRLRSGILLYGPPGCGKTLLASAIASECGLNFISVKGPELLNKYIGASEQNVRDLFS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 127 MARFYAPTTIFIDEIDSICSRRGtSDEHEASRRVKSELLIQMDGVGGAlenddpsKMVMVLAATNFPWDIDEALRR--RL 204
Cdd:cd19526    81 RAQSAKPCILFFDEFDSIAPKRG-HDSTGVTDRVVNQLLTQLDGVEGL-------DGVYVLAATSRPDLIDPALLRpgRL 152


                  ....*
gi 1034585080 205 EKRIY 209
Cdd:cd19526   153 DKLVY 157
RecA-like_NVL_r1-like cd19518
first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL ...
 41-208 1.49e-36

first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL exists in two forms with N-terminal extensions of different lengths in mammalian cells. NVL has two alternatively spliced isoforms, a short form, NVL1, and a long form, NVL2. NVL2, the major species, is mainly present in the nucleolus, whereas NVL1 is nucleoplasmic. Each has an N-terminal domain, followed by two tandem ATPase domains; this subfamily includes the first of the two ATPase domains. NVL2 is involved in the biogenesis of the 60S ribosome subunit by associating specifically with ribosome protein L5 and modulating the function of DOB1. NVL2 is also required for telomerase assembly and the regulation of telomerase activity, and is involved in pre-rRNA processing. The role of NVL1 is unclear. This RecA-like_NVL_r1-like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410926 [Multi-domain]  Cd Length: 169  Bit Score: 129.06  E-value: 1.49e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  41 DIADLEEAKKLLREAVVLPMWMPDFFK--GIRRPwKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESE 118
Cdd:cd19518     1 DIGGMDSTLKELCELLIHPILPPEYFQhlGVEPP-RGVLLHGPPGCGKTMLANAIAGELKVPFLKISATEIVSGVSGESE 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 119 KLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSdEHEASRRVKSELLIQMDGVGgalENDDPSKMVMVLAATNFPWDIDE 198
Cdd:cd19518    80 EKIRELFDQAISNAPCIVFIDEIDAITPKRESA-QREMERRIVSQLLTCMDELN---NEKTAGGPVLVIGATNRPDSLDP 155

                         170
                  ....*....|..
gi 1034585080 199 ALRR--RLEKRI 208
Cdd:cd19518   156 ALRRagRFDREI 167
RecA-like_PEX6_r2 cd19527
second of two ATPase domains of Peroxisomal biogenesis factor 6 (PEX6); PEX6(also known as ...
 49-210 3.52e-35

second of two ATPase domains of Peroxisomal biogenesis factor 6 (PEX6); PEX6(also known as Peroxin61)/PEX1 is a protein unfoldase; PEX6 and PEX1 form a heterohexameric Type-2 AAA-ATPase complex and are essential for peroxisome biogenesis as they are required for the import of folded proteins into the peroxisomal matrix. This subfamily represents the second ATPase domain of PEX6. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410935 [Multi-domain]  Cd Length: 160  Bit Score: 125.32  E-value: 3.52e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  49 KKLLREAVVLPMWMPDFF-KGIRRPwKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEM 127
Cdd:cd19527     2 KKEILDTIQLPLEHPELFsSGLRKR-SGILLYGPPGTGKTLLAKAIATECSLNFLSVKGPELINMYIGESEANVREVFQK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 128 ARFYAPTTIFIDEIDSICSRRGTS-DEHEASRRVKSELLIQMDGVGGALENddpskmVMVLAATNFPWDIDEALRR--RL 204
Cdd:cd19527    81 ARDAKPCVIFFDELDSLAPSRGNSgDSGGVMDRVVSQLLAELDGMSSSGQD------VFVIGATNRPDLLDPALLRpgRF 154


                  ....*.
gi 1034585080 205 EKRIYI 210
Cdd:cd19527   155 DKLLYL 160
RecA-like_Yta7-like cd19517
ATPase domain of Saccharomyces cerevisiae Yta7 and similar ATPase domains; Saccharomyces ...
 41-209 8.75e-33

ATPase domain of Saccharomyces cerevisiae Yta7 and similar ATPase domains; Saccharomyces cerevisiae Yta7 is a chromatin-associated AAA-ATPase involved in regulation of chromatin dynamics. Its human ortholog ANCCA/ATAD2 transcriptionally activates pathways of malignancy in a broad range of cancers. The RecA-like_Yta7 subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410925 [Multi-domain]  Cd Length: 170  Bit Score: 119.54  E-value: 8.75e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  41 DIADLEEAKKLLREAVVLPMWMPDFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGT-----TFFNVSSSTLTSKYR 114
Cdd:cd19517     1 DIGGLSHYINQLKEMVFFPLLYPEVFAKFKiTPPRGVLFHGPPGTGKTLMARALAAECSKggqkvSFFMRKGADCLSKWV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 115 GESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVkSELLIQMDGVggalendDPSKMVMVLAATNFPW 194
Cdd:cd19517    81 GEAERQLRLLFEEAYRMQPSIIFFDEIDGLAPVRSSKQEQIHASIV-STLLALMDGL-------DNRGQVVVIGATNRPD 152

                         170
                  ....*....|....*..
gi 1034585080 195 DIDEALRR--RLEKRIY 209
Cdd:cd19517   153 ALDPALRRpgRFDREFY 169
AAA cd00009
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ...
 43-212 1.71e-24

The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.


Pssm-ID: 99707 [Multi-domain]  Cd Length: 151  Bit Score: 96.83  E-value: 1.71e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  43 ADLEEAKKLLREAVvlpmwmpdffkgIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVSSSTLTSKYRGESEK 119
Cdd:cd00009     1 VGQEEAIEALREAL------------ELPPPKNLLLYGPPGTGKTTLARAIANELfrpGAPFLYLNASDLLEGLVVAELF 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 120 ---LVRLLFEMARFYAPTTIFIDEIDSIcsrrgtsdeheaSRRVKSELLIQMDGVggaLENDDPSKMVMVLAATNFPW-- 194
Cdd:cd00009    69 ghfLVRLLFELAEKAKPGVLFIDEIDSL------------SRGAQNALLRVLETL---NDLRIDRENVRVIGATNRPLlg 133

                         170
                  ....*....|....*...
gi 1034585080 195 DIDEALRRRLEKRIYIPL 212
Cdd:cd00009   134 DLDRALYDRLDIRIVIPL 151
RecA-like_NSF-SEC18_r1-like cd19504
first of two ATPase domains of NSF and SEC18, and similar ATPase domains; ...
 74-210 7.84e-18

first of two ATPase domains of NSF and SEC18, and similar ATPase domains; N-ethylmaleimide-sensitive factor (NSF) and Saccharomyces cerevisiae Vesicular-fusion protein Sec18, key factors for eukaryotic trafficking, are ATPases and SNARE disassembly chaperones. NSF/Sec18 activate or prime SNAREs, the terminal catalysts of membrane fusion. Sec18/NSF associates with SNARE complexes through binding Sec17/alpha-SNAP. Sec18 has an N-terminal cap domain and two nucleotide-binding domains (D1 and D2) which form the two rings of the hexameric complex. The hydrolysis of ATP by D1 generates most of the energy necessary to disassemble inactive SNARE bundles, while the D2 ring binds ATP to stabilize the homohexamer. This subfamily includes the first (D1) ATPase domain of NSF/Sec18, and belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410912 [Multi-domain]  Cd Length: 177  Bit Score: 79.46  E-value: 7.84e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  74 KGVLMVGPPGTGKTMLAKAVAtecgtTFFN------VSSSTLTSKYRGESEKLVRLLFEMA----RFYAPTT----IFID 139
Cdd:cd19504    36 KGILLYGPPGTGKTLMARQIG-----KMLNarepkiVNGPEILNKYVGESEANIRKLFADAeeeqRRLGANSglhiIIFD 110

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1034585080 140 EIDSICSRRGTS-DEHEASRRVKSELLIQMDGVgGALENddpskmVMVLAATNFPWDIDEALRR--RLEKRIYI 210
Cdd:cd19504   111 EIDAICKQRGSMaGSTGVHDTVVNQLLSKIDGV-EQLNN------ILVIGMTNRKDLIDEALLRpgRLEVQMEI 177
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
 72-214 1.01e-16

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 75.87  E-value: 1.01e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080   72 PWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSS-----------------STLTSKYRGESEKLVRLLFEMARFYAPT 134
Cdd:smart00382   1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYidgedileevldqllliIVGGKKASGSGELRLRLALALARKLKPD 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  135 TIFIDEIDSICsrrgtsdeheasrRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEA-LRRRLEKRIYIPLP 213
Cdd:smart00382  81 VLILDEITSLL-------------DAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPAlLRRRFDRRIVLLLI 147


                   .
gi 1034585080  214 T 214
Cdd:smart00382 148 L 148
RecA-like_Ycf46-like cd19507
ATPase domain of Ycf46 and similar ATPase domains; Ycf46 may play a role in the regulation of ...
 41-168 2.62e-16

ATPase domain of Ycf46 and similar ATPase domains; Ycf46 may play a role in the regulation of photosynthesis in cyanobacteria, especially in CO2 uptake and utilization. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410915 [Multi-domain]  Cd Length: 161  Bit Score: 75.10  E-value: 2.62e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  41 DIADLEEAKKLL--REAVVLPmwmPDFFKGIRRPwKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESE 118
Cdd:cd19507     1 DVGGLDNLKDWLkkRKAAFSK---QASAYGLPTP-KGLLLVGIQGTGKSLTAKAIAGVWQLPLLRLDMGRLFGGLVGESE 76

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1034585080 119 KLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQM 168
Cdd:cd19507    77 SRLRQMIQTAEAIAPCVLWIDEIEKGFSNADSKGDSGTSSRVLGTFLTWL 126
RecA-like_IQCA1 cd19506
ATPase domain of IQ and AAA domain-containing protein 1 (IQCA1); IQCA1 (also known as dynein ...
 74-208 1.92e-13

ATPase domain of IQ and AAA domain-containing protein 1 (IQCA1); IQCA1 (also known as dynein regulatory complex subunit 11, DRC11 and IQCA) is an ATPase subunit of the nexin-dynein regulatory complex (N-DRC). The 9 + 2 axoneme of most motile cilia and flagella consists of nine outer doublet microtubules arranged in a ring surrounding a central pair of two singlet microtubules. The N-DRC complex maintains alignment between outer doublet microtubules and limits microtubule sliding in motile axonemes. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410914 [Multi-domain]  Cd Length: 160  Bit Score: 67.17  E-value: 1.92e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  74 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGES--EKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTS 151
Cdd:cd19506    27 KSLLLAGPSGVGKKMLVHAICTETGANLFNLSPSNIAGKYPGKNglQMMLHLVLKVARQLQPSVIWIGDAEKTFYKKVPK 106

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1034585080 152 DEHEAS-RRVKSELliqmdgvGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRI 208
Cdd:cd19506   107 TEKQLDpKRLKKDL-------PKILKSLKPEDRVLIVGTTSRPFEADLKSFCKVYNKI 157
ycf46 CHL00195
Ycf46; Provisional
 74-252 2.49e-12

Ycf46; Provisional


Pssm-ID: 177094 [Multi-domain]  Cd Length: 489  Bit Score: 67.35  E-value: 2.49e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  74 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDE 153
Cdd:CHL00195  260 RGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGD 339

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 154 HEASRRVKSELLIQMDgvggalENDDPskmVMVLA-ATNFPWDIDEALRR-RLEKRIYIPLPTAKGRAELLKINLREVEl 231
Cdd:CHL00195  340 SGTTNRVLATFITWLS------EKKSP---VFVVAtANNIDLLPLEILRKgRFDEIFFLDLPSLEEREKIFKIHLQKFR- 409

                         170       180
                  ....*....|....*....|....*
gi 1034585080 232 dPD-IQLEDI---AEKIEGYSGADI 252
Cdd:CHL00195  410 -PKsWKKYDIkklSKLSNKFSGAEI 433
AAA_lid_3 pfam17862
AAA+ lid domain; This entry represents the alpha helical AAA+ lid domain that is found to the ...
 234-278 7.53e-12

AAA+ lid domain; This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains.


Pssm-ID: 465537 [Multi-domain]  Cd Length: 45  Bit Score: 59.09  E-value: 7.53e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1034585080 234 DIQLEDIAEKIEGYSGADITNVCRDASLMAMRRRINGLSPEEIRA 278
Cdd:pfam17862   1 DVDLEELAERTEGFSGADLEALCREAALAALRRGLEAVTQEDLEE 45
RecA-like_Pch2-like cd19508
ATPase domain of Pachytene checkpoint 2 (Pch2) and similar ATPase domains; Pch2 (known as ...
 76-210 5.83e-11

ATPase domain of Pachytene checkpoint 2 (Pch2) and similar ATPase domains; Pch2 (known as Thyroid hormone receptor interactor 13 (TRIP13) and 16E1BP) is a key regulator of specific chromosomal events, like the control of G2/prophase processes such as DNA break formation and recombination, checkpoint signaling, and chromosome synapsis. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion


Pssm-ID: 410916 [Multi-domain]  Cd Length: 199  Bit Score: 60.92  E-value: 5.83e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  76 VLMVGPPGTGKTMLAKAVATECG---------TTFFNVSSSTLTSKYRGESEKLVRLLF----EMARFY-APTTIFIDEI 141
Cdd:cd19508    55 VLLHGPPGTGKTSLCKALAQKLSirlssryryGQLIEINSHSLFSKWFSESGKLVTKMFqkiqELIDDKdALVFVLIDEV 134

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034585080 142 DSICSRRGTS---DEHEASRRVKSELLIQMDgvggALENDDPskmVMVLAATNFPWDIDEALRRRLEKRIYI 210
Cdd:cd19508   135 ESLAAARSASssgTEPSDAIRVVNAVLTQID----RIKRYHN---NVILLTSNLLEKIDVAFVDRADIKQYI 199
RecA-like_BCS1 cd19510
Mitochondrial chaperone BCS1; Mitochondrial chaperone BCS1 is necessary for the assembly of ...
 63-210 3.42e-09

Mitochondrial chaperone BCS1; Mitochondrial chaperone BCS1 is necessary for the assembly of mitochondrial respiratory chain complex III and plays an important role in the maintenance of mitochondrial tubular networks, respiratory chain assembly and formation of the LETM1 complex. RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410918 [Multi-domain]  Cd Length: 153  Bit Score: 54.67  E-value: 3.42e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  63 PDFFKGIRRPWK-GVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTltskyRGESEKLVRLLfeMARFYAPTTIFIDEI 141
Cdd:cd19510    12 EDWYNDRGIPYRrGYLLYGPPGTGKSSFIAALAGELDYDICDLNLSE-----VVLTDDRLNHL--LNTAPKQSIILLEDI 84

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034585080 142 D-SICSRRGTSDEHEA----SRRVKSELLIQMDGVGGALENddpskmvMVLAATNFPWDIDEALRR--RLEKRIYI 210
Cdd:cd19510    85 DaAFESREHNKKNPSAygglSRVTFSGLLNALDGVASSEER-------IVFMTTNHIERLDPALIRpgRVDMKIYM 153
RecA-like_ATAD3-like cd19512
ATPase domains of ATPase AAA-domain protein 3A (ATAD3A), -3B, and -3C, and similar ATPase ...
 70-208 6.29e-09

ATPase domains of ATPase AAA-domain protein 3A (ATAD3A), -3B, and -3C, and similar ATPase domains; ATPase AAA-domain protein 3 (ATAD3) is a ubiquitously expressed mitochondrial protein involved in mitochondrial dynamics, DNA-nucleoid structural organization, cholesterol transport and steroidogenesis. The ATAD3 gene family in human comprises three paralog genes: ATAD3A, ATAD3B and ATAD3C. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410920 [Multi-domain]  Cd Length: 150  Bit Score: 54.07  E-value: 6.29e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  70 RRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRgESEKLVRLLFEmarfYAPTT-----IFIDEIDSI 144
Cdd:cd19512    19 KGLYRNILFYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVAPMGR-EGVTAIHKVFD----WANTSrrgllLFVDEADAF 93

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1034585080 145 CSRRGTSDEHEASRRVKSELLIQMdgvggalenDDPSKMVMVLAATNFPWDIDEALRRRLEKRI 208
Cdd:cd19512    94 LRKRSTEKISEDLRAALNAFLYRT---------GEQSNKFMLVLASNQPEQFDWAINDRIDEMV 148
Vps4_C pfam09336
Vps4 C terminal oligomerization domain; This domain is found at the C terminal of ATPase ...
 282-320 1.37e-08

Vps4 C terminal oligomerization domain; This domain is found at the C terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerization.


Pssm-ID: 462762 [Multi-domain]  Cd Length: 61  Bit Score: 50.57  E-value: 1.37e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1034585080 282 EELQMP-VTKGDFELALKKIAKSVSAADLEKYEKWMVEFG 320
Cdd:pfam09336  22 DKLLEPpVTMKDFLKALKSSRPTVSKEDLEKYEEFTKEFG 61
RecA-like_HslU cd19498
ATP-dependent protease ATPase subunit HslU; HslU is a component of the ATP-dependent protease ...
 74-165 2.65e-08

ATP-dependent protease ATPase subunit HslU; HslU is a component of the ATP-dependent protease HslVU. In HslVU, HslU ATPase serves to unfold and translocate protein substrate, and the HslV protease degrades the unfolded proteins. This RecA-like_HslU subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410906 [Multi-domain]  Cd Length: 183  Bit Score: 52.77  E-value: 2.65e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  74 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTS-KYRG-ESEKLVRLLFEmarfyapTTIFIDEIDSICSRRGTS 151
Cdd:cd19498    47 KNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEvGYVGrDVESIIRDLVE-------GIVFIDEIDKIAKRGGSS 119

                          90
                  ....*....|....*
gi 1034585080 152 DeHEASRR-VKSELL 165
Cdd:cd19498   120 G-PDVSREgVQRDLL 133
MoxR COG0714
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway ...
 76-242 2.18e-07

MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 440478 [Multi-domain]  Cd Length: 292  Bit Score: 51.32  E-value: 2.18e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  76 VLMVGPPGTGKTMLAKAVATECGTTFFNVS-SSTL-------TSKYRGESEKLV---RLLFEmarfyapTTIFIDEIDsi 144
Cdd:COG0714    34 LLLEGVPGVGKTTLAKALARALGLPFIRIQfTPDLlpsdilgTYIYDQQTGEFEfrpGPLFA-------NVLLADEIN-- 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 145 csRrgtsdeheASRRVKSELL-------IQMDGVGGALEnddpsKMVMVLAATNfPWDID------EALRRRLEKRIYIP 211
Cdd:COG0714   105 --R--------APPKTQSALLeameerqVTIPGGTYKLP-----EPFLVIATQN-PIEQEgtyplpEAQLDRFLLKLYIG 168

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1034585080 212 LPTAKGRAELLK--INLREVELDPDIQLEDIAE 242
Cdd:COG0714   169 YPDAEEEREILRrhTGRHLAEVEPVLSPEELLA 201
TIP49 COG1224
DNA helicase TIP49, TBP-interacting protein [Transcription];
74-124 8.34e-07

DNA helicase TIP49, TBP-interacting protein [Transcription];


Pssm-ID: 440837 [Multi-domain]  Cd Length: 452  Bit Score: 50.35  E-value: 8.34e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1034585080  74 KGVLMVGPPGTGKTMLAKAVATECG--TTFFNVSSSTLTSKYRGESEKLVRLL 124
Cdd:COG1224    65 KGILIVGPPGTGKTALAVAIARELGedTPFVAISGSEIYSAELKKTEFLMQAL 117
RecA-like_Ycf2 cd19505
ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; ...
 72-200 2.79e-06

ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; however, its function remains unclear. The gene encoding YCF2 is the largest known plastid gene in angiosperms and has been used to predict phylogenetic relationships. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410913 [Multi-domain]  Cd Length: 161  Bit Score: 46.60  E-value: 2.79e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  72 PWKGVLMVGPPGTGKTMLAKAVATEC--------------GTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIF 137
Cdd:cd19505    11 PSKGILLIGSIETGRSYLIKSLAANSyvplirislnkllyNKPDFGNDDWIDGMLILKESLHRLNLQFELAKAMSPCIIW 90

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1034585080 138 IDEIDSICSRRGTSDEHEASrrvKSELLIQMDGVGGALENDDPSKMVmVLAATNFPWDIDEAL 200
Cdd:cd19505    91 IPNIHELNVNRSTQNLEEDP---KLLLGLLLNYLSRDFEKSSTRNIL-VIASTHIPQKVDPAL 149
RecA-like_ClpX cd19497
ATP-dependent Clp protease ATP-binding subunit ClpX; ClpX is a component of the ATP-dependent ...
 46-144 6.26e-06

ATP-dependent Clp protease ATP-binding subunit ClpX; ClpX is a component of the ATP-dependent protease ClpXP. In ClpXP, ClpX ATPase serves to specifically recognize, unfold, and translocate protein substrates into the chamber of ClpP protease for degradation. This RecA-like_ClpX domain subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410905 [Multi-domain]  Cd Length: 251  Bit Score: 46.82  E-value: 6.26e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  46 EEAKKLLREAVVlpmwmpDFFKGIRRPWKG-----------VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLT-SKY 113
Cdd:cd19497    18 ERAKKVLSVAVY------NHYKRIRNNLKQkdddveleksnILLIGPTGSGKTLLAQTLAKILDVPFAIADATTLTeAGY 91

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1034585080 114 RGESEK--LVRLL----FEMARfyAPTTI-FIDEIDSI 144
Cdd:cd19497    92 VGEDVEniLLKLLqaadYDVER--AQRGIvYIDEIDKI 127
T7SS_EccA TIGR03922
type VII secretion AAA-ATPase EccA; This model represents the AAA family ATPase, EccA, of the ...
 77-243 9.65e-06

type VII secretion AAA-ATPase EccA; This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 188437 [Multi-domain]  Cd Length: 557  Bit Score: 47.15  E-value: 9.65e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  77 LMVGPPGTGKTMLAKAVATE-CGTTFF------NVSSSTLTSKYRGESEKLVRLLFEMArfyAPTTIFIDEIDSICSRR- 148
Cdd:TIGR03922 316 LFAGPPGTGKTTIARVVAKIyCGLGVLrkplvrEVSRADLIGQYIGESEAKTNEIIDSA---LGGVLFLDEAYTLVETGy 392

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080 149 GTSDEHEASrrVKSELLIQMDG------VGGALENDDPSKMVmvlaatnfpwDIDEALRRRLEKRIYIPLPTAkgrAELL 222
Cdd:TIGR03922 393 GQKDPFGLE--AIDTLLARMENdrdrlvVIGAGYRKDLDKFL----------EVNEGLRSRFTRVIEFPSYSP---DELV 457

                         170       180
                  ....*....|....*....|.
gi 1034585080 223 KINLREVELDPDIqLEDIAEK 243
Cdd:TIGR03922 458 EIARRMATERDSV-LDDAAAD 477
RarA COG2256
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ...
 80-141 1.74e-05

Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];


Pssm-ID: 441857 [Multi-domain]  Cd Length: 439  Bit Score: 46.20  E-value: 1.74e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034585080  80 GPPGTGKTMLAKAVATECGTTFFNVsSSTLTSKyrgeseKLVRLLFEMARFYA----PTTIFIDEI 141
Cdd:COG2256    56 GPPGTGKTTLARLIANATDAEFVAL-SAVTSGV------KDIREVIEEARERRaygrRTILFVDEI 114
YifB COG0606
Predicted Mg-chelatase, contains ChlI-like and ATPase domains, YifB family [Posttranslational ...
 76-95 1.84e-05

Predicted Mg-chelatase, contains ChlI-like and ATPase domains, YifB family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440371 [Multi-domain]  Cd Length: 502  Bit Score: 46.19  E-value: 1.84e-05
                          10        20
                  ....*....|....*....|
gi 1034585080  76 VLMVGPPGTGKTMLAKAVAT 95
Cdd:COG0606   214 LLMIGPPGSGKTMLARRLPG 233
PRK13342 PRK13342
recombination factor protein RarA; Reviewed
 80-141 2.07e-05

recombination factor protein RarA; Reviewed


Pssm-ID: 237355 [Multi-domain]  Cd Length: 413  Bit Score: 45.85  E-value: 2.07e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034585080  80 GPPGTGKTMLAKAVATECGTTFFNVsSSTLTSKyrgeseKLVRLLFEMA---RFYAPTTI-FIDEI 141
Cdd:PRK13342   43 GPPGTGKTTLARIIAGATDAPFEAL-SAVTSGV------KDLREVIEEArqrRSAGRRTIlFIDEI 101
Mg_chelatase pfam01078
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that ...
 76-95 6.64e-05

Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that catalyzes the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.


Pssm-ID: 426032 [Multi-domain]  Cd Length: 207  Bit Score: 43.29  E-value: 6.64e-05
                          10        20
                  ....*....|....*....|
gi 1034585080  76 VLMVGPPGTGKTMLAKAVAT 95
Cdd:pfam01078  25 LLMIGPPGSGKTMLAKRLPG 44
PRK04195 PRK04195
replication factor C large subunit; Provisional
 40-96 7.77e-05

replication factor C large subunit; Provisional


Pssm-ID: 235250 [Multi-domain]  Cd Length: 482  Bit Score: 44.14  E-value: 7.77e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1034585080  40 DDIADLEEAKKLLREavvlpmWMPDFFKGirRPWKGVLMVGPPGTGKTMLAKAVATE 96
Cdd:PRK04195   14 SDVVGNEKAKEQLRE------WIESWLKG--KPKKALLLYGPPGVGKTSLAHALAND 62
AAA_2 pfam07724
AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected ...
 76-146 8.56e-05

AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.


Pssm-ID: 400187 [Multi-domain]  Cd Length: 168  Bit Score: 42.18  E-value: 8.56e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  76 VLMVGPPGTGKTMLAKAVA-----TECGTTFFNVSS---STLTSKYRGESEKLVR-----LLFEMARFYAPTTIFIDEID 142
Cdd:pfam07724   6 FLFLGPTGVGKTELAKALAellfgDERALIRIDMSEymeEHSVSRLIGAPPGYVGyeeggQLTEAVRRKPYSIVLIDEIE 85


                  ....
gi 1034585080 143 SICS 146
Cdd:pfam07724  86 KAHP 89
TIP49 pfam06068
TIP49 P-loop domain; This family consists of the C-terminal region of several eukaryotic and ...
 74-119 9.85e-05

TIP49 P-loop domain; This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities.TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases.


Pssm-ID: 399217 [Multi-domain]  Cd Length: 347  Bit Score: 43.45  E-value: 9.85e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1034585080  74 KGVLMVGPPGTGKTMLAKAVATECG--TTFFNVSSSTLtskYRGESEK 119
Cdd:pfam06068  51 RAVLIAGPPGTGKTALAIAISKELGedTPFTSISGSEV---YSLEMKK 95
clpX PRK05342
ATP-dependent Clp protease ATP-binding subunit ClpX;
76-149 2.84e-04

ATP-dependent Clp protease ATP-binding subunit ClpX;


Pssm-ID: 235422 [Multi-domain]  Cd Length: 412  Bit Score: 42.07  E-value: 2.84e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  76 VLMVGPPGTGKTMLAKAVAtecgtTFFNV-----SSSTLT-SKYRGES-EK-LVRLL----FEMARfyAPTTI-FIDEID 142
Cdd:PRK05342  111 ILLIGPTGSGKTLLAQTLA-----RILDVpfaiaDATTLTeAGYVGEDvENiLLKLLqaadYDVEK--AQRGIvYIDEID 183


                  ....*..
gi 1034585080 143 SIcSRRG 149
Cdd:PRK05342  184 KI-ARKS 189
AAA_5 pfam07728
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ...
 75-204 4.62e-04

AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.


Pssm-ID: 400191 [Multi-domain]  Cd Length: 135  Bit Score: 39.58  E-value: 4.62e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  75 GVLMVGPPGTGKTMLAK--AVATECGTTFF-----NVSSSTLTSKYR---GESEKLVRLLFEMARfyAPTTIFIDEIDsi 144
Cdd:pfam07728   1 GVLLVGPPGTGKTELAErlAAALSNRPVFYvqltrDTTEEDLFGRRNidpGGASWVDGPLVRAAR--EGEIAVLDEIN-- 76

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034585080 145 csrrgtsdehEASRRVKSEL--------LIQMDGVGgalENDDPSKMVMVLAATNFP----WDIDEALRRRL 204
Cdd:pfam07728  77 ----------RANPDVLNSLlsllderrLLLPDGGE---LVKAAPDGFRLIATMNPLdrglNELSPALRSRF 135
RecA-like_Lon cd19500
lon protease homolog 2 peroxisomal; Lon protease (also known as Lon peptidase) is an ...
 77-105 4.67e-04

lon protease homolog 2 peroxisomal; Lon protease (also known as Lon peptidase) is an evolutionarily conserved ATP-dependent serine protease, present in bacteria and eukaryotic mitochondria and peroxisomes, which mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Lon protease is both an ATP-dependent peptidase and a protein-activated ATPase. This RecA-like Lon domain subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410908 [Multi-domain]  Cd Length: 182  Bit Score: 40.23  E-value: 4.67e-04
                          10        20
                  ....*....|....*....|....*....
gi 1034585080  77 LMVGPPGTGKTMLAKAVATECGTTFFNVS 105
Cdd:cd19500    41 CLVGPPGVGKTSLGKSIARALGRKFVRIS 69
ClpX COG1219
ATP-dependent protease Clp, ATPase subunit ClpX [Posttranslational modification, protein ...
 76-149 1.02e-03

ATP-dependent protease Clp, ATPase subunit ClpX [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440832 [Multi-domain]  Cd Length: 409  Bit Score: 40.42  E-value: 1.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034585080  76 VLMVGPPGTGKTMLAK----------AVA-----TECGttffnvssstltskYRGES-EK-LVRLL----FEMARfyAPT 134
Cdd:COG1219   112 ILLIGPTGSGKTLLAQtlarildvpfAIAdattlTEAG--------------YVGEDvENiLLKLLqaadYDVEK--AER 175

                          90
                  ....*....|....*.
gi 1034585080 135 TI-FIDEIDSIcSRRG 149
Cdd:COG1219   176 GIiYIDEIDKI-ARKS 190
BREX_3_BrxF NF033453
BREX-3 system P-loop-containing protein BrxF; This family of proteins that are about 150 amino ...
 76-141 1.14e-03

BREX-3 system P-loop-containing protein BrxF; This family of proteins that are about 150 amino acids in length includes BrxF from type 3 BREX (bacteriophage exclusion) systems. Most members have the P-loop motif GxxGxGKT, but the region is surprisingly poorly conserved in a sizable fraction of otherwise strongly similar proteins.


Pssm-ID: 468038  Cd Length: 149  Bit Score: 38.63  E-value: 1.14e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034585080  76 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSS------TLTSKYRgeSEKLVRLLFEMARFYAPTTIFIDEI 141
Cdd:NF033453   19 ILLVGPPGSGKTALLRELAAKRGAPVINVNLElsrrllELPEKQR--ALRAPRLLDEIAEKSSGDVVLLDNI 88
ruvB PRK00080
Holliday junction branch migration DNA helicase RuvB;
76-141 1.59e-03

Holliday junction branch migration DNA helicase RuvB;


Pssm-ID: 234619 [Multi-domain]  Cd Length: 328  Bit Score: 39.73  E-value: 1.59e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034585080  76 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLtskyrgesEK---LVRLLfemarfyapTTI------FIDEI 141
Cdd:PRK00080   54 VLLYGPPGLGKTTLANIIANEMGVNIRITSGPAL--------EKpgdLAAIL---------TNLeegdvlFIDEI 111
DnaC COG1484
DNA replication protein DnaC [Replication, recombination and repair];
74-97 2.03e-03

DNA replication protein DnaC [Replication, recombination and repair];


Pssm-ID: 441093 [Multi-domain]  Cd Length: 242  Bit Score: 38.99  E-value: 2.03e-03
                          10        20
                  ....*....|....*....|....
gi 1034585080  74 KGVLMVGPPGTGKTMLAKAVATEC 97
Cdd:COG1484   100 ENLILLGPPGTGKTHLAIALGHEA 123
AAA_7 pfam12775
P-loop containing dynein motor region; This domain is found in human cytoplasmic dynein-2 ...
 74-108 6.65e-03

P-loop containing dynein motor region; This domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliopathies. Dyneins share a conserved motor domain that couples cycles of ATP hydrolysis with conformational changes to produce movement. Structural analysis reveal that the motor's ring consists of six AAA+ domains (ATPases associated with various cellular activities (AAA1-AAA6). This is the third nucleotide binding sites in the dynein motor. However, AAA3 has lost the catalytic residues necessary for ATP hydrolysis (the Walker B glutamate, the arginine finger, sensor-I and sensor-II motifs).


Pssm-ID: 463698 [Multi-domain]  Cd Length: 179  Bit Score: 36.99  E-value: 6.65e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1034585080  74 KGVLMVGPPGTGKTMLAKAV-----ATECGTTFFNVSSST 108
Cdd:pfam12775  32 KPVLLVGPTGTGKTVIIQNLlrkldKEKYLPLFINFSAQT 71
AAA_33 pfam13671
AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the ...
 76-129 7.80e-03

AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif.


Pssm-ID: 463952 [Multi-domain]  Cd Length: 143  Bit Score: 36.13  E-value: 7.80e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034585080  76 VLMVGPPGTGKTMLAKAVATECGTTFfnVSSSTLTSKYRGE-----------SEKLVRLLFEMAR 129
Cdd:pfam13671   2 ILLVGLPGSGKSTLARRLLEELGAVR--LSSDDERKRLFGEgrpsisyytdaTDRTYERLHELAR 64
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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